Path	Lines of Code
core/indigo-core/common/base_c/bitarray.c	290
core/indigo-core/common/base_c/bitarray.h	35
core/indigo-core/common/base_c/defs.h	85
core/indigo-core/common/base_cpp/array.h	467
core/indigo-core/common/base_cpp/auto_iter.h	15
core/indigo-core/common/base_cpp/bitinworker.cpp	52
core/indigo-core/common/base_cpp/bitinworker.h	22
core/indigo-core/common/base_cpp/bitoutworker.cpp	38
core/indigo-core/common/base_cpp/bitoutworker.h	22
core/indigo-core/common/base_cpp/cancellation_handler.cpp	51
core/indigo-core/common/base_cpp/cancellation_handler.h	59
core/indigo-core/common/base_cpp/chunk_storage.cpp	52
core/indigo-core/common/base_cpp/chunk_storage.h	26
core/indigo-core/common/base_cpp/common_exceptions_impl.cpp	21
core/indigo-core/common/base_cpp/crc32.cpp	47
core/indigo-core/common/base_cpp/crc32.h	21
core/indigo-core/common/base_cpp/csv_reader.cpp	74
core/indigo-core/common/base_cpp/csv_reader.h	19
core/indigo-core/common/base_cpp/cyclic_array.h	56
core/indigo-core/common/base_cpp/d_bitset.cpp	462
core/indigo-core/common/base_cpp/d_bitset.h	110
core/indigo-core/common/base_cpp/exception.cpp	18
core/indigo-core/common/base_cpp/exception.h	70
core/indigo-core/common/base_cpp/gray_codes.cpp	48
core/indigo-core/common/base_cpp/gray_codes.h	28
core/indigo-core/common/base_cpp/io_base.cpp	46
core/indigo-core/common/base_cpp/io_base.h	29
core/indigo-core/common/base_cpp/list.h	184
core/indigo-core/common/base_cpp/locale_guard.cpp	22
core/indigo-core/common/base_cpp/locale_guard.h	23
core/indigo-core/common/base_cpp/multimap.h	183
core/indigo-core/common/base_cpp/non_copyable.h	12
core/indigo-core/common/base_cpp/nullable.h	55
core/indigo-core/common/base_cpp/obj.h	137
core/indigo-core/common/base_cpp/obj_array.h	144
core/indigo-core/common/base_cpp/obj_list.h	100
core/indigo-core/common/base_cpp/obj_pool.h	94
core/indigo-core/common/base_cpp/os_sync_wrapper.cpp	44
core/indigo-core/common/base_cpp/os_sync_wrapper.h	44
core/indigo-core/common/base_cpp/os_thread_wrapper.cpp	341
core/indigo-core/common/base_cpp/os_thread_wrapper.h	85
core/indigo-core/common/base_cpp/output.cpp	263
core/indigo-core/common/base_cpp/output.h	104
core/indigo-core/common/base_cpp/pool.h	110
core/indigo-core/common/base_cpp/profiling.cpp	254
core/indigo-core/common/base_cpp/profiling.h	107
core/indigo-core/common/base_cpp/properties_map.cpp	136
core/indigo-core/common/base_cpp/properties_map.h	68
core/indigo-core/common/base_cpp/ptr_array.h	139
core/indigo-core/common/base_cpp/ptr_pool.h	92
core/indigo-core/common/base_cpp/queue.h	57
core/indigo-core/common/base_cpp/red_black.h	945
core/indigo-core/common/base_cpp/reusable_obj_array.h	95
core/indigo-core/common/base_cpp/scanner.cpp	780
core/indigo-core/common/base_cpp/scanner.h	120
core/indigo-core/common/base_cpp/shmem.h	36
core/indigo-core/common/base_cpp/shmem_posix.cpp	69
core/indigo-core/common/base_cpp/shmem_win32.cpp	49
core/indigo-core/common/base_cpp/smart_output.cpp	180
core/indigo-core/common/base_cpp/smart_output.h	36
core/indigo-core/common/base_cpp/string_pool.cpp	78
core/indigo-core/common/base_cpp/string_pool.h	76
core/indigo-core/common/base_cpp/tlscont.cpp	27
core/indigo-core/common/base_cpp/tlscont.h	88
core/indigo-core/common/base_cpp/tree.h	75
core/indigo-core/common/base_cpp/trie.h	177
core/indigo-core/common/gzip/gzip_output.cpp	76
core/indigo-core/common/gzip/gzip_output.h	31
core/indigo-core/common/gzip/gzip_scanner.cpp	152
core/indigo-core/common/gzip/gzip_scanner.h	39
core/indigo-core/common/lzw/lzw_decoder.cpp	73
core/indigo-core/common/lzw/lzw_decoder.h	46
core/indigo-core/common/lzw/lzw_dictionary.cpp	219
core/indigo-core/common/lzw/lzw_dictionary.h	66
core/indigo-core/common/lzw/lzw_encoder.cpp	64
core/indigo-core/common/lzw/lzw_encoder.h	43
core/indigo-core/common/math/algebra.h	648
core/indigo-core/common/math/best_fit.cpp	256
core/indigo-core/common/math/line3f.cpp	20
core/indigo-core/common/math/lseg3f.cpp	30
core/indigo-core/common/math/matr3x3d.cpp	199
core/indigo-core/common/math/plane3f.cpp	36
core/indigo-core/common/math/random.cpp	62
core/indigo-core/common/math/random.h	23
core/indigo-core/common/math/statistics.cpp	33
core/indigo-core/common/math/statistics.h	20
core/indigo-core/common/math/transform3f.cpp	230
core/indigo-core/common/math/vec2f.cpp	234
core/indigo-core/common/math/vec3f.cpp	133
core/indigo-core/common/utils/emf_utils.cpp	278
core/indigo-core/common/utils/emf_utils.h	122
core/indigo-core/common/utils/image_not_supported.h	228
core/indigo-core/graph/automorphism_search.h	109
core/indigo-core/graph/aux_path_finder.h	20
core/indigo-core/graph/biconnected_decomposer.h	43
core/indigo-core/graph/cycle_basis.h	35
core/indigo-core/graph/cycle_enumerator.h	28
core/indigo-core/graph/dfs_walk.h	58
core/indigo-core/graph/edge_rotation_matcher.h	29
core/indigo-core/graph/edge_subgraph_enumerator.h	48
core/indigo-core/graph/embedding_enumerator.h	126
core/indigo-core/graph/embeddings_storage.h	52
core/indigo-core/graph/filter.h	52
core/indigo-core/graph/graph.h	215
core/indigo-core/graph/graph_affine_matcher.h	24
core/indigo-core/graph/graph_constrained_bmatching_finder.h	49
core/indigo-core/graph/graph_decomposer.h	42
core/indigo-core/graph/graph_fast_access.h	37
core/indigo-core/graph/graph_iterators.h	61
core/indigo-core/graph/graph_perfect_matching.h	80
core/indigo-core/graph/graph_subchain_enumerator.h	33
core/indigo-core/graph/graph_subtree_enumerator.h	44
core/indigo-core/graph/graph_vertex_equivalence.h	49
core/indigo-core/graph/max_common_subgraph.h	507
core/indigo-core/graph/morgan_code.h	15
core/indigo-core/graph/path_enumerator.h	29
core/indigo-core/graph/scaffold_detection.h	81
core/indigo-core/graph/shortest_path_finder.h	23
core/indigo-core/graph/simple_cycle_basis.h	60
core/indigo-core/graph/skew_symmetric_flow_finder.h	33
core/indigo-core/graph/skew_symmetric_network.h	42
core/indigo-core/graph/spanning_tree.h	67
core/indigo-core/graph/src/automorphism_search.cpp	838
core/indigo-core/graph/src/aux_path_finder.cpp	42
core/indigo-core/graph/src/biconnected_decomposer.cpp	145
core/indigo-core/graph/src/cycle_basis.cpp	43
core/indigo-core/graph/src/cycle_enumerator.cpp	105
core/indigo-core/graph/src/dfs_walk.cpp	184
core/indigo-core/graph/src/edge_rotation_matcher.cpp	233
core/indigo-core/graph/src/edge_subgraph_enumerator.cpp	192
core/indigo-core/graph/src/embedding_enumerator.cpp	531
core/indigo-core/graph/src/embeddings_storage.cpp	143
core/indigo-core/graph/src/filter.cpp	97
core/indigo-core/graph/src/graph.cpp	682
core/indigo-core/graph/src/graph_affine_matcher.cpp	53
core/indigo-core/graph/src/graph_constrained_bmatching_finder.cpp	151
core/indigo-core/graph/src/graph_decomposer.cpp	116
core/indigo-core/graph/src/graph_fast_access.cpp	90
core/indigo-core/graph/src/graph_iterators.cpp	73
core/indigo-core/graph/src/graph_perfect_matching.cpp	251
core/indigo-core/graph/src/graph_subchain_enumerator.cpp	66
core/indigo-core/graph/src/graph_subtree_enumerator.cpp	136
core/indigo-core/graph/src/max_common_subgraph.cpp	1823
core/indigo-core/graph/src/morgan_code.cpp	26
core/indigo-core/graph/src/path_enumerator.cpp	79
core/indigo-core/graph/src/scaffold_detection.cpp	292
core/indigo-core/graph/src/shortest_path_finder.cpp	51
core/indigo-core/graph/src/simple_cycle_basis.cpp	336
core/indigo-core/graph/src/skew_symmetric_flow_finder.cpp	185
core/indigo-core/graph/src/skew_symmetric_network.cpp	99
core/indigo-core/graph/src/spanning_tree.cpp	116
core/indigo-core/graph/src/subgraph_hash.cpp	93
core/indigo-core/graph/subgraph_hash.h	34
core/indigo-core/layout/attachment_layout.h	63
core/indigo-core/layout/layout_pattern.h	77
core/indigo-core/layout/layout_pattern_holder.h	17
core/indigo-core/layout/layout_pattern_smart.h	25
core/indigo-core/layout/metalayout.h	270
core/indigo-core/layout/molecule_cleaner_2d.h	89
core/indigo-core/layout/molecule_layout.h	57
core/indigo-core/layout/molecule_layout_graph.h	533
core/indigo-core/layout/molecule_layout_macrocycles.h	298
core/indigo-core/layout/pathway_layout.h	207
core/indigo-core/layout/patmake/patmake.cpp	246
core/indigo-core/layout/reaction_layout.h	80
core/indigo-core/layout/refinement_state.h	31
core/indigo-core/layout/sequence_layout.h	60
core/indigo-core/layout/src/attachment_layout.cpp	304
core/indigo-core/layout/src/layout_pattern.cpp	48
core/indigo-core/layout/src/layout_pattern_holder.cpp	75
core/indigo-core/layout/src/layout_pattern_smart.cpp	110
core/indigo-core/layout/src/layout_patterns.inc	2421
core/indigo-core/layout/src/metalayout.cpp	274
core/indigo-core/layout/src/molecule_cleaner_2d.cpp	915
core/indigo-core/layout/src/molecule_layout.cpp	457
core/indigo-core/layout/src/molecule_layout_graph.cpp	484
core/indigo-core/layout/src/molecule_layout_graph_assign.cpp	965
core/indigo-core/layout/src/molecule_layout_graph_assign_smart.cpp	1309
core/indigo-core/layout/src/molecule_layout_graph_attach.cpp	889
core/indigo-core/layout/src/molecule_layout_graph_border.cpp	512
core/indigo-core/layout/src/molecule_layout_graph_cycle.cpp	153
core/indigo-core/layout/src/molecule_layout_graph_geom.cpp	632
core/indigo-core/layout/src/molecule_layout_graph_refine.cpp	384
core/indigo-core/layout/src/molecule_layout_graph_smart.cpp	352
core/indigo-core/layout/src/molecule_layout_macrocycle_lattice.cpp	1168
core/indigo-core/layout/src/molecule_layout_macrocycles.cpp	1199
core/indigo-core/layout/src/pathway_layout.cpp	457
core/indigo-core/layout/src/reaction_layout.cpp	400
core/indigo-core/layout/src/refinement_state.cpp	227
core/indigo-core/layout/src/sequence_layout.cpp	149
core/indigo-core/layout/src/templates/generate_layout_patterns.py	29
core/indigo-core/layout/src/templates/layout_patterns.inc	3170
core/indigo-core/molecule/CDXCommons.h	1284
core/indigo-core/molecule/CDXConstants.h	919
core/indigo-core/molecule/alkanes.inc	17
core/indigo-core/molecule/base_molecule.h	490
core/indigo-core/molecule/basic_elements.inc	106
core/indigo-core/molecule/canonical_smiles_saver.h	30
core/indigo-core/molecule/cmf_loader.h	108
core/indigo-core/molecule/cmf_saver.h	72
core/indigo-core/molecule/cmf_symbol_codes.h	86
core/indigo-core/molecule/cml_loader.h	51
core/indigo-core/molecule/cml_saver.h	40
core/indigo-core/molecule/crippen.h	12
core/indigo-core/molecule/elements.h	258
core/indigo-core/molecule/flags.inc	9
core/indigo-core/molecule/haworth_projection_finder.h	44
core/indigo-core/molecule/hybridization.h	24
core/indigo-core/molecule/icm_common.h	8
core/indigo-core/molecule/icm_loader.h	20
core/indigo-core/molecule/icm_saver.h	26
core/indigo-core/molecule/idt_alias.h	118
core/indigo-core/molecule/inchi_parser.h	56
core/indigo-core/molecule/inchi_wrapper.h	46
core/indigo-core/molecule/json_writer.h	135
core/indigo-core/molecule/ket_document.h	155
core/indigo-core/molecule/ket_document_json_loader.h	43
core/indigo-core/molecule/ket_document_json_saver.h	45
core/indigo-core/molecule/ket_objects.h	865
core/indigo-core/molecule/lipinski.h	12
core/indigo-core/molecule/max_common_submolecule.h	19
core/indigo-core/molecule/meta_commons.h	448
core/indigo-core/molecule/metadata_storage.h	63
core/indigo-core/molecule/molecule.h	137
core/indigo-core/molecule/molecule_3d_constraints.h	314
core/indigo-core/molecule/molecule_allene_stereo.h	53
core/indigo-core/molecule/molecule_arom.h	153
core/indigo-core/molecule/molecule_arom_match.h	38
core/indigo-core/molecule/molecule_auto_loader.h	56
core/indigo-core/molecule/molecule_automorphism_search.h	84
core/indigo-core/molecule/molecule_cdxml_loader.h	735
core/indigo-core/molecule/molecule_cdxml_saver.h	132
core/indigo-core/molecule/molecule_chain_fingerprints.h	42
core/indigo-core/molecule/molecule_cip_calculator.h	75
core/indigo-core/molecule/molecule_cis_trans.h	79
core/indigo-core/molecule/molecule_dearom.h	250
core/indigo-core/molecule/molecule_electrons_localizer.h	105
core/indigo-core/molecule/molecule_exact_matcher.h	67
core/indigo-core/molecule/molecule_exact_substructure_matcher.h	41
core/indigo-core/molecule/molecule_fingerprint.h	152
core/indigo-core/molecule/molecule_gross_formula.h	54
core/indigo-core/molecule/molecule_gross_formula_options.h	22
core/indigo-core/molecule/molecule_hash.h	11
core/indigo-core/molecule/molecule_inchi.h	43
core/indigo-core/molecule/molecule_inchi_component.h	32
core/indigo-core/molecule/molecule_inchi_layers.h	91
core/indigo-core/molecule/molecule_inchi_utils.h	32
core/indigo-core/molecule/molecule_ionize.h	79
core/indigo-core/molecule/molecule_json_loader.h	93
core/indigo-core/molecule/molecule_json_saver.h	78
core/indigo-core/molecule/molecule_layered_molecules.h	155
core/indigo-core/molecule/molecule_mass.h	32
core/indigo-core/molecule/molecule_mass_options.h	21
core/indigo-core/molecule/molecule_morgan_fingerprint_builder.h	62
core/indigo-core/molecule/molecule_name_parser.h	377
core/indigo-core/molecule/molecule_neighbourhood_counters.h	52
core/indigo-core/molecule/molecule_pi_systems_matcher.h	69
core/indigo-core/molecule/molecule_rgroups.h	44
core/indigo-core/molecule/molecule_rgroups_composition.h	216
core/indigo-core/molecule/molecule_savers.h	21
core/indigo-core/molecule/molecule_scaffold_detection.h	58
core/indigo-core/molecule/molecule_sgroups.h	223
core/indigo-core/molecule/molecule_standardize.h	90
core/indigo-core/molecule/molecule_standardize_options.h	63
core/indigo-core/molecule/molecule_stereocenter_options.h	23
core/indigo-core/molecule/molecule_stereocenters.h	143
core/indigo-core/molecule/molecule_substructure_matcher.h	132
core/indigo-core/molecule/molecule_tautomer.h	212
core/indigo-core/molecule/molecule_tautomer_enumerator.h	56
core/indigo-core/molecule/molecule_tautomer_matcher.h	49
core/indigo-core/molecule/molecule_tautomer_substructure_matcher.h	71
core/indigo-core/molecule/molecule_tautomer_utils.h	18
core/indigo-core/molecule/molecule_tgroups.h	64
core/indigo-core/molecule/molfile_loader.h	109
core/indigo-core/molecule/molfile_saver.h	95
core/indigo-core/molecule/monomer_commons.h	111
core/indigo-core/molecule/monomers_basic_templates.h	6803
core/indigo-core/molecule/monomers_defs.h	55
core/indigo-core/molecule/monomers_lib.h	80
core/indigo-core/molecule/monomers_template_library.h	219
core/indigo-core/molecule/multiple_cdx_loader.h	40
core/indigo-core/molecule/multiple_cml_loader.h	31
core/indigo-core/molecule/multipliers.inc	49
core/indigo-core/molecule/parse_utils.h	43
core/indigo-core/molecule/query_molecule.h	332
core/indigo-core/molecule/rdf_loader.h	49
core/indigo-core/molecule/sdf_loader.h	37
core/indigo-core/molecule/separators.inc	40
core/indigo-core/molecule/sequence_loader.h	100
core/indigo-core/molecule/sequence_saver.h	54
core/indigo-core/molecule/skeletal.inc	31
core/indigo-core/molecule/smiles_loader.h	139
core/indigo-core/molecule/smiles_saver.h	136
core/indigo-core/molecule/src/base_molecule.cpp	3982
core/indigo-core/molecule/src/canonical_smiles_saver.cpp	92
core/indigo-core/molecule/src/cmf_loader.cpp	769
core/indigo-core/molecule/src/cmf_saver.cpp	748
core/indigo-core/molecule/src/cml_loader.cpp	1572
core/indigo-core/molecule/src/cml_saver.cpp	749
core/indigo-core/molecule/src/crippen.cpp	422
core/indigo-core/molecule/src/elements.cpp	1181
core/indigo-core/molecule/src/elements_isotopes.inc	3098
core/indigo-core/molecule/src/haworth_projection_finder.cpp	340
core/indigo-core/molecule/src/hybridization.cpp	185
core/indigo-core/molecule/src/icm_loader.cpp	38
core/indigo-core/molecule/src/icm_saver.cpp	36
core/indigo-core/molecule/src/idt_alias.cpp	55
core/indigo-core/molecule/src/inchi_parser.cpp	136
core/indigo-core/molecule/src/inchi_wrapper.cpp	542
core/indigo-core/molecule/src/ket_document.cpp	448
core/indigo-core/molecule/src/ket_document_json_loader.cpp	314
core/indigo-core/molecule/src/ket_document_json_saver.cpp	463
core/indigo-core/molecule/src/ket_objects.cpp	606
core/indigo-core/molecule/src/lipinski.cpp	42
core/indigo-core/molecule/src/max_common_submolecule.cpp	31
core/indigo-core/molecule/src/meta_commons.cpp	257
core/indigo-core/molecule/src/metadata_storage.cpp	132
core/indigo-core/molecule/src/molecule.cpp	1278
core/indigo-core/molecule/src/molecule_3d_constraints.cpp	816
core/indigo-core/molecule/src/molecule_allene_stereo.cpp	599
core/indigo-core/molecule/src/molecule_arom.cpp	805
core/indigo-core/molecule/src/molecule_arom_match.cpp	220
core/indigo-core/molecule/src/molecule_auto_loader.cpp	463
core/indigo-core/molecule/src/molecule_automorphism_search.cpp	891
core/indigo-core/molecule/src/molecule_cdxml_loader.cpp	1699
core/indigo-core/molecule/src/molecule_cdxml_saver.cpp	1772
core/indigo-core/molecule/src/molecule_chain_fingerprints.cpp	82
core/indigo-core/molecule/src/molecule_cip_calculator.cpp	1567
core/indigo-core/molecule/src/molecule_cis_trans.cpp	696
core/indigo-core/molecule/src/molecule_dearom.cpp	1280
core/indigo-core/molecule/src/molecule_electrons_localizer.cpp	663
core/indigo-core/molecule/src/molecule_exact_matcher.cpp	272
core/indigo-core/molecule/src/molecule_exact_substructure_matcher.cpp	147
core/indigo-core/molecule/src/molecule_fingerprint.cpp	731
core/indigo-core/molecule/src/molecule_gross_formula.cpp	366
core/indigo-core/molecule/src/molecule_gross_formula_options.cpp	11
core/indigo-core/molecule/src/molecule_hash.cpp	26
core/indigo-core/molecule/src/molecule_inchi.cpp	187
core/indigo-core/molecule/src/molecule_inchi_component.cpp	144
core/indigo-core/molecule/src/molecule_inchi_layers.cpp	624
core/indigo-core/molecule/src/molecule_inchi_utils.cpp	94
core/indigo-core/molecule/src/molecule_ionize.cpp	1151
core/indigo-core/molecule/src/molecule_json_loader.cpp	1818
core/indigo-core/molecule/src/molecule_json_saver.cpp	1863
core/indigo-core/molecule/src/molecule_layered_molecules.cpp	649
core/indigo-core/molecule/src/molecule_mass.cpp	313
core/indigo-core/molecule/src/molecule_mass_options.cpp	10
core/indigo-core/molecule/src/molecule_morgan_fingerprint_builder.cpp	173
core/indigo-core/molecule/src/molecule_name_parser.cpp	1359
core/indigo-core/molecule/src/molecule_neighbourhood_counters.cpp	290
core/indigo-core/molecule/src/molecule_pi_systems_matcher.cpp	470
core/indigo-core/molecule/src/molecule_rgroups.cpp	71
core/indigo-core/molecule/src/molecule_rgroups_composition.cpp	183
core/indigo-core/molecule/src/molecule_savers.cpp	84
core/indigo-core/molecule/src/molecule_scaffold_detection.cpp	226
core/indigo-core/molecule/src/molecule_sgroups.cpp	645
core/indigo-core/molecule/src/molecule_standardize.cpp	1277
core/indigo-core/molecule/src/molecule_standardize_options.cpp	148
core/indigo-core/molecule/src/molecule_stereocenter_options.cpp	12
core/indigo-core/molecule/src/molecule_stereocenters.cpp	1579
core/indigo-core/molecule/src/molecule_substructure_matcher.cpp	1131
core/indigo-core/molecule/src/molecule_tautomer_chain.cpp	932
core/indigo-core/molecule/src/molecule_tautomer_enumerator.cpp	500
core/indigo-core/molecule/src/molecule_tautomer_match.cpp	414
core/indigo-core/molecule/src/molecule_tautomer_matcher.cpp	168
core/indigo-core/molecule/src/molecule_tautomer_substructure_matcher.cpp	213
core/indigo-core/molecule/src/molecule_tautomer_superstructure.cpp	261
core/indigo-core/molecule/src/molecule_tautomer_utils.cpp	53
core/indigo-core/molecule/src/molecule_tgroups.cpp	165
core/indigo-core/molecule/src/molfile_loader.cpp	3473
core/indigo-core/molecule/src/molfile_saver.cpp	1888
core/indigo-core/molecule/src/monomer_commons.cpp	250
core/indigo-core/molecule/src/monomers_lib.cpp	135
core/indigo-core/molecule/src/monomers_template_library.cpp	233
core/indigo-core/molecule/src/multiple_cdx_loader.cpp	348
core/indigo-core/molecule/src/multiple_cml_loader.cpp	100
core/indigo-core/molecule/src/parse_utils.cpp	90
core/indigo-core/molecule/src/pka_decision_tree.h	1532
core/indigo-core/molecule/src/query_molecule.cpp	2744
core/indigo-core/molecule/src/rdf_loader.cpp	218
core/indigo-core/molecule/src/sdf_loader.cpp	185
core/indigo-core/molecule/src/sequence_loader.cpp	2004
core/indigo-core/molecule/src/sequence_saver.cpp	1405
core/indigo-core/molecule/src/smiles_loader.cpp	3052
core/indigo-core/molecule/src/smiles_saver.cpp	1770
core/indigo-core/molecule/src/structure_checker.cpp	648
core/indigo-core/molecule/src/tpsa.cpp	137
core/indigo-core/molecule/structure_checker.h	113
core/indigo-core/molecule/token_types.inc	21
core/indigo-core/molecule/tpsa.h	30
core/indigo-core/molecule/trivial.inc	186
core/indigo-core/reaction/base_reaction.h	311
core/indigo-core/reaction/base_reaction_substructure_matcher.h	114
core/indigo-core/reaction/canonical_rsmiles_saver.h	23
core/indigo-core/reaction/crf_common.h	14
core/indigo-core/reaction/crf_loader.h	39
core/indigo-core/reaction/crf_saver.h	43
core/indigo-core/reaction/icr_loader.h	20
core/indigo-core/reaction/icr_saver.h	26
core/indigo-core/reaction/pathway_reaction.h	223
core/indigo-core/reaction/pathway_reaction_builder.h	51
core/indigo-core/reaction/pathway_reaction_json_saver.h	21
core/indigo-core/reaction/query_reaction.h	52
core/indigo-core/reaction/reaction.h	44
core/indigo-core/reaction/reaction_auto_loader.h	52
core/indigo-core/reaction/reaction_automapper.h	178
core/indigo-core/reaction/reaction_cdxml_loader.h	41
core/indigo-core/reaction/reaction_cdxml_saver.h	37
core/indigo-core/reaction/reaction_cml_loader.h	24
core/indigo-core/reaction/reaction_cml_saver.h	24
core/indigo-core/reaction/reaction_enumerator_state.h	165
core/indigo-core/reaction/reaction_exact_matcher.h	35
core/indigo-core/reaction/reaction_fingerprint.h	38
core/indigo-core/reaction/reaction_gross_formula.h	21
core/indigo-core/reaction/reaction_hash.h	11
core/indigo-core/reaction/reaction_json_loader.h	58
core/indigo-core/reaction/reaction_json_saver.h	47
core/indigo-core/reaction/reaction_multistep_detector.h	57
core/indigo-core/reaction/reaction_neighborhood_counters.h	21
core/indigo-core/reaction/reaction_product_enumerator.h	45
core/indigo-core/reaction/reaction_substructure_matcher.h	38
core/indigo-core/reaction/reaction_transformation.h	36
core/indigo-core/reaction/rsmiles_loader.h	40
core/indigo-core/reaction/rsmiles_saver.h	55
core/indigo-core/reaction/rxnfile_loader.h	50
core/indigo-core/reaction/rxnfile_saver.h	44
core/indigo-core/reaction/src/base_reaction.cpp	423
core/indigo-core/reaction/src/base_reaction_substructure_matcher.cpp	490
core/indigo-core/reaction/src/canonical_rsmiles_saver.cpp	102
core/indigo-core/reaction/src/crf_loader.cpp	128
core/indigo-core/reaction/src/crf_saver.cpp	129
core/indigo-core/reaction/src/icr_loader.cpp	34
core/indigo-core/reaction/src/icr_saver.cpp	36
core/indigo-core/reaction/src/pathway_reaction.cpp	83
core/indigo-core/reaction/src/pathway_reaction_builder.cpp	198
core/indigo-core/reaction/src/pathway_reaction_json_saver.cpp	29
core/indigo-core/reaction/src/query_reaction.cpp	177
core/indigo-core/reaction/src/reaction.cpp	80
core/indigo-core/reaction/src/reaction_auto_loader.cpp	364
core/indigo-core/reaction/src/reaction_automapper.cpp	1825
core/indigo-core/reaction/src/reaction_cdxml_loader.cpp	201
core/indigo-core/reaction/src/reaction_cdxml_saver.cpp	463
core/indigo-core/reaction/src/reaction_cml_loader.cpp	76
core/indigo-core/reaction/src/reaction_cml_saver.cpp	56
core/indigo-core/reaction/src/reaction_enumerator_state.cpp	1551
core/indigo-core/reaction/src/reaction_exact_matcher.cpp	86
core/indigo-core/reaction/src/reaction_fingerprint.cpp	77
core/indigo-core/reaction/src/reaction_gross_formula.cpp	56
core/indigo-core/reaction/src/reaction_hash.cpp	32
core/indigo-core/reaction/src/reaction_json_loader.cpp	153
core/indigo-core/reaction/src/reaction_json_saver.cpp	62
core/indigo-core/reaction/src/reaction_multistep_detector.cpp	709
core/indigo-core/reaction/src/reaction_neighborhood_counters.cpp	23
core/indigo-core/reaction/src/reaction_product_enumerator.cpp	133
core/indigo-core/reaction/src/reaction_substructure_matcher.cpp	169
core/indigo-core/reaction/src/reaction_transformation.cpp	139
core/indigo-core/reaction/src/rsmiles_loader.cpp	473
core/indigo-core/reaction/src/rsmiles_saver.cpp	365
core/indigo-core/reaction/src/rxnfile_loader.cpp	199
core/indigo-core/reaction/src/rxnfile_saver.cpp	193
core/render2d/render.h	37
core/render2d/render_cdxml.h	66
core/render2d/render_common.h	516
core/render2d/render_context.h	184
core/render2d/render_font_face_manager.h	201
core/render2d/render_grid.h	36
core/render2d/render_internal.h	203
core/render2d/render_item.h	35
core/render2d/render_item_aux.h	82
core/render2d/render_item_column.h	24
core/render2d/render_item_container.h	23
core/render2d/render_item_factory.h	97
core/render2d/render_item_fragment.h	37
core/render2d/render_item_hline.h	20
core/render2d/render_item_molecule.h	32
core/render2d/render_item_reaction.h	32
core/render2d/render_params.h	54
core/render2d/render_single.h	30
core/render2d/src/render.cpp	73
core/render2d/src/render_cdxml.cpp	351
core/render2d/src/render_common.cpp	394
core/render2d/src/render_context.cpp	1538
core/render2d/src/render_font_face_manager.cpp	106
core/render2d/src/render_fonts.cpp	157
core/render2d/src/render_grid.cpp	197
core/render2d/src/render_internal.cpp	3771
core/render2d/src/render_item.cpp	10
core/render2d/src/render_item_aux.cpp	494
core/render2d/src/render_item_column.cpp	52
core/render2d/src/render_item_container.cpp	69
core/render2d/src/render_item_factory.cpp	3
core/render2d/src/render_item_fragment.cpp	104
core/render2d/src/render_item_hline.cpp	45
core/render2d/src/render_item_molecule.cpp	234
core/render2d/src/render_item_reaction.cpp	287
core/render2d/src/render_params.cpp	249
core/render2d/src/render_single.cpp	123