id: 1 unit: static transformSequences() file: client/client/modules/render/variant-render/transformers/short-variant-transformer.js start line: 6 end line: 349 size: 336 LOC McCabe index: 113 number of parameters: 2 id: 2 unit: drawChart() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesGraph/ngbDiseasesGraph.controller.js start line: 121 end line: 409 size: 289 LOC McCabe index: 37 number of parameters: 1 id: 3 unit: _renderExonsStructure() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 901 end line: 1171 size: 270 LOC McCabe index: 42 number of parameters: 5 id: 4 unit: _manageReferenceViewports() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 104 end line: 358 size: 244 LOC McCabe index: 50 number of parameters: 1 id: 5 unit: featureClick() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.events.js start line: 28 end line: 261 size: 234 LOC McCabe index: 48 number of parameters: 4 id: 6 unit: async _loadProject() file: client/client/app/shared/projectContext/index.js start line: 1679 end line: 1905 size: 210 LOC McCabe index: 76 number of parameters: 5 id: 7 unit: template: require() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetSavedIdentificationsDialog/ngbTargetSavedIdentificationsDialog.run.js start line: 19 end line: 238 size: 209 LOC McCabe index: 25 number of parameters: 1 id: 8 unit: getVariantsGridColumns() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.service.js start line: 19 end line: 225 size: 202 LOC McCabe index: 16 number of parameters: 0 id: 9 unit: render() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/aminoacidFeatureRenderer.js start line: 150 end line: 326 size: 171 LOC McCabe index: 20 number of parameters: 7 id: 10 unit: async analyzeStructuralVariant() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 134 end line: 309 size: 170 LOC McCabe index: 40 number of parameters: 2 id: 11 unit: _renderItems() file: client/client/modules/render/tracks/wig/wigRenderer.js start line: 174 end line: 361 size: 170 LOC McCabe index: 12 number of parameters: 6 id: 12 unit: _mapVariantSnpData() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantDbSnp/ngbVariantDbSnp.service.js start line: 31 end line: 212 size: 165 LOC McCabe index: 36 number of parameters: 2 id: 13 unit: getUserManagementColumns() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.service.js start line: 106 end line: 268 size: 162 LOC McCabe index: 16 number of parameters: 1 id: 14 unit: template: require() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetLaunchDialog/ngbTargetLaunchDialog.run.js start line: 22 end line: 186 size: 153 LOC McCabe index: 23 number of parameters: 1 id: 15 unit: export default function buildCallbacks() file: client/client/modules/render/heatmap/interactions/build-callbacks.js start line: 33 end line: 184 size: 148 LOC McCabe index: 21 number of parameters: 3 id: 16 unit: async readClick() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.events.js start line: 303 end line: 509 size: 147 LOC McCabe index: 20 number of parameters: 4 id: 17 unit: static analyzeVariant() file: client/client/dataServices/vcf/vcf-analyzer.js start line: 18 end line: 165 size: 140 LOC McCabe index: 39 number of parameters: 3 id: 18 unit: public List readHomologenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 249 end line: 386 size: 138 LOC McCabe index: 30 number of parameters: 1 id: 19 unit: onHover() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 673 end line: 810 size: 138 LOC McCabe index: 29 number of parameters: 1 id: 20 unit: getTableColumns() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 293 end line: 429 size: 135 LOC McCabe index: 17 number of parameters: 0 id: 21 unit: transform() file: client/client/modules/render/tracks/wig/wigTransformer.js start line: 147 end line: 314 size: 135 LOC McCabe index: 20 number of parameters: 2 id: 22 unit: analyzeBedItemStructure() file: client/client/modules/render/tracks/bed/internal/data/bedTransformer.js start line: 11 end line: 157 size: 134 LOC McCabe index: 30 number of parameters: 2 id: 23 unit: function SelectSingleInput() file: export-templates/target-identification/src/common/select/index.tsx start line: 168 end line: 301 size: 134 LOC McCabe index: 14 number of parameters: 1 id: 24 unit: drawChart() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesBubbles/ngbDiseasesBubbles.controller.js start line: 36 end line: 171 size: 132 LOC McCabe index: 31 number of parameters: 1 id: 25 unit: render() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 455 end line: 586 size: 132 LOC McCabe index: 33 number of parameters: 1 id: 26 unit: _renderTranscriptsStructure() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 1224 end line: 1360 size: 131 LOC McCabe index: 24 number of parameters: 2 id: 27 unit: reloadCytoscape() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 206 end line: 349 size: 130 LOC McCabe index: 13 number of parameters: 1 id: 28 unit: constructor() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/axis-label.js start line: 119 end line: 242 size: 124 LOC McCabe index: 12 number of parameters: 1 id: 29 unit: loadVariationsGroupData() file: client/client/app/shared/projectContext/index.js start line: 2216 end line: 2335 size: 117 LOC McCabe index: 37 number of parameters: 1 id: 30 unit: rebuildContainer() file: client/client/modules/render/tracks/blast/renderer.js start line: 71 end line: 187 size: 117 LOC McCabe index: 14 number of parameters: 2 id: 31 unit: _renderNonEmptyBlock() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/transcriptFeatureRenderer.js start line: 86 end line: 201 size: 116 LOC McCabe index: 9 number of parameters: 1 id: 32 unit: manageViewports() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 86 end line: 201 size: 115 LOC McCabe index: 17 number of parameters: 1 id: 33 unit: buildAlternativeAllelesLabels() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 154 end line: 269 size: 114 LOC McCabe index: 13 number of parameters: 1 id: 34 unit: export function renderGroups() file: client/client/modules/render/tracks/bam/internal/renderer/features/groupsRenderer.js start line: 13 end line: 136 size: 113 LOC McCabe index: 15 number of parameters: 4 id: 35 unit: function SelectMultipleInput() file: export-templates/target-identification/src/common/select/index.tsx start line: 303 end line: 415 size: 113 LOC McCabe index: 14 number of parameters: 1 id: 36 unit: renderTree() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/binary-tree-graphics.js start line: 336 end line: 457 size: 111 LOC McCabe index: 18 number of parameters: 1 id: 37 unit: async loadVariations() file: client/client/app/shared/projectContext/index.js start line: 2386 end line: 2498 size: 108 LOC McCabe index: 23 number of parameters: 1 id: 38 unit: getBlastHistoryGridColumns() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 169 end line: 277 size: 108 LOC McCabe index: 14 number of parameters: 0 id: 39 unit: _listener() file: client/client/app/app.controller.js start line: 91 end line: 197 size: 107 LOC McCabe index: 31 number of parameters: 1 id: 40 unit: getStructureTableGridColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 158 end line: 264 size: 106 LOC McCabe index: 13 number of parameters: 0 id: 41 unit: async INIT() file: client/client/app/components/ngbSashimiPlot/ngbSashimiPlot.controller.js start line: 63 end line: 182 size: 105 LOC McCabe index: 19 number of parameters: 0 id: 42 unit: splitExons() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 779 end line: 882 size: 104 LOC McCabe index: 26 number of parameters: 5 id: 43 unit: rebuildContainer() file: client/client/modules/render/tracks/gene/internal/renderer/geneRenderer.js start line: 86 end line: 189 size: 103 LOC McCabe index: 21 number of parameters: 2 id: 44 unit: getBookmarksGridColumns() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 77 end line: 180 size: 102 LOC McCabe index: 5 number of parameters: 0 id: 45 unit: render() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/commonVariantFeatureRenderer.js start line: 90 end line: 192 size: 102 LOC McCabe index: 6 number of parameters: 7 id: 46 unit: async changeStateAsync() file: client/client/app/shared/projectContext/index.js start line: 1406 end line: 1508 size: 101 LOC McCabe index: 28 number of parameters: 2 id: 47 unit: checkArea() file: client/client/modules/render/utilities/zonesManager.js start line: 68 end line: 168 size: 101 LOC McCabe index: 28 number of parameters: 3 id: 48 unit: _renderModifiedSequence() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 344 end line: 469 size: 101 LOC McCabe index: 20 number of parameters: 4 id: 49 unit: async navigateToTracks() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.service.js start line: 111 end line: 211 size: 100 LOC McCabe index: 14 number of parameters: 5 id: 50 unit: async navigateToChromosome() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.service.js start line: 260 end line: 358 size: 98 LOC McCabe index: 14 number of parameters: 2 id: 51 unit: getGenesGridColumns() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 384 end line: 481 size: 97 LOC McCabe index: 10 number of parameters: 0 id: 52 unit: _manageAlternativeViewports() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 360 end line: 462 size: 96 LOC McCabe index: 12 number of parameters: 1 id: 53 unit: renderChromosomes() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 204 end line: 298 size: 94 LOC McCabe index: 19 number of parameters: 1 id: 54 unit: reloadCytoscape() file: client/client/app/components/ngbStrainLineage/ngbCytoscape/ngbCytoscape.controller.js start line: 112 end line: 218 size: 93 LOC McCabe index: 9 number of parameters: 1 id: 55 unit: private List parseSequencesAsTable() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/sequence/NCBISequenceManager.java start line: 257 end line: 352 size: 92 LOC McCabe index: 14 number of parameters: 2 id: 56 unit: getReads() file: client/client/dataServices/bam/bam-data-service.js start line: 33 end line: 163 size: 92 LOC McCabe index: 24 number of parameters: 3 id: 57 unit: calculateGridContent() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 317 end line: 411 size: 92 LOC McCabe index: 11 number of parameters: 0 id: 58 unit: export default function generateScaleModesMenu() file: client/client/modules/render/tracks/common/scaleModes/generateScaleModesMenu.js start line: 11 end line: 107 size: 92 LOC McCabe index: 13 number of parameters: 1 id: 59 unit: export default function TableColumnFilter() file: export-templates/target-identification/src/common/table/filter.tsx start line: 12 end line: 103 size: 92 LOC McCabe index: 15 number of parameters: 1 id: 60 unit: renderNodeGraphics() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/binary-tree-graphics.js start line: 238 end line: 328 size: 91 LOC McCabe index: 9 number of parameters: 1 id: 61 unit: getTargetsTableGridColumns() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 160 end line: 250 size: 90 LOC McCabe index: 8 number of parameters: 0 id: 62 unit: async INIT() file: client/client/app/components/ngbTracksView/ngbTracksView.controller.js start line: 130 end line: 238 size: 90 LOC McCabe index: 12 number of parameters: 0 id: 63 unit: static analyzeTranscriptExonStructure() file: client/client/modules/render/tracks/gene/internal/data/geneTransformer.js start line: 175 end line: 270 size: 90 LOC McCabe index: 18 number of parameters: 1 id: 64 unit: INIT() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbProjectSummary/ngbProjectSummary.controller.js start line: 51 end line: 140 size: 89 LOC McCabe index: 28 number of parameters: 0 id: 65 unit: renderChromosome() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 491 end line: 580 size: 89 LOC McCabe index: 10 number of parameters: 3 id: 66 unit: export default function MainSection() file: export-templates/target-identification/src/sections/main/index.tsx start line: 30 end line: 118 size: 89 LOC McCabe index: 5 number of parameters: 0 id: 67 unit: export default function buildMainInfoBlocks() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/utilities/build-main-info-blocks.js start line: 1 end line: 88 size: 88 LOC McCabe index: 12 number of parameters: 1 id: 68 unit: rebuildContainer() file: client/client/modules/render/tracks/comparison/renderer.js start line: 66 end line: 153 size: 88 LOC McCabe index: 8 number of parameters: 2 id: 69 unit: public Reference registerGenome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 157 end line: 259 size: 87 LOC McCabe index: 17 number of parameters: 1 id: 70 unit: buildTranscriptExonsPositions() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 574 end line: 660 size: 87 LOC McCabe index: 24 number of parameters: 1 id: 71 unit: export default function browserDetect() file: client/client/app/shared/browserDetect/index.js start line: 11 end line: 121 size: 86 LOC McCabe index: 16 number of parameters: 0 id: 72 unit: function generateAffectedFeaturesStructure() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 1007 end line: 1098 size: 85 LOC McCabe index: 16 number of parameters: 1 id: 73 unit: navigateToCoordinate() file: client/client/app/shared/services/api.service.js start line: 82 end line: 190 size: 85 LOC McCabe index: 23 number of parameters: 1 id: 74 unit: transformCollapsedData() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 39 end line: 127 size: 85 LOC McCabe index: 17 number of parameters: 2 id: 75 unit: constructor() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 68 end line: 151 size: 84 LOC McCabe index: 12 number of parameters: 3 id: 76 unit: export default async function parseCoordinates() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/parse-coordinates.js start line: 120 end line: 217 size: 84 LOC McCabe index: 22 number of parameters: 6 id: 77 unit: async appendData() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 170 end line: 253 size: 84 LOC McCabe index: 14 number of parameters: 2 id: 78 unit: buildMultipleNucleotideRegion() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 291 end line: 374 size: 84 LOC McCabe index: 10 number of parameters: 4 id: 79 unit: function renderTableColumn() file: export-templates/target-identification/src/common/table/index.tsx start line: 21 end line: 103 size: 83 LOC McCabe index: 17 number of parameters: 5 id: 80 unit: protected void addExtraFeatureFields() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/BigVcfDocumentBuilder.java start line: 275 end line: 363 size: 82 LOC McCabe index: 16 number of parameters: 2 id: 81 unit: _initSubscriptions() file: client/client/modules/render/core/viewport/viewport.js start line: 191 end line: 279 size: 82 LOC McCabe index: 13 number of parameters: 0 id: 82 unit: constructor() file: client/client/modules/render/tracks/bam/index.js start line: 225 end line: 312 size: 81 LOC McCabe index: 13 number of parameters: 1 id: 83 unit: render() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/transcriptFeatureRenderer.js start line: 289 end line: 371 size: 81 LOC McCabe index: 16 number of parameters: 7 id: 84 unit: globalSettingsChanged() file: client/client/modules/render/tracks/bam/index.js start line: 341 end line: 427 size: 80 LOC McCabe index: 21 number of parameters: 1 id: 85 unit: private GeneFile registerGeneFileFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 265 end line: 352 size: 79 LOC McCabe index: 14 number of parameters: 1 id: 86 unit: initLayout() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 139 end line: 238 size: 79 LOC McCabe index: 16 number of parameters: 0 id: 87 unit: render() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/interChromosomeFeatureRenderer.js start line: 28 end line: 112 size: 79 LOC McCabe index: 7 number of parameters: 7 id: 88 unit: renderContinuous() file: client/client/modules/render/heatmap/renderer/color-scheme-renderer/index.js start line: 165 end line: 243 size: 79 LOC McCabe index: 5 number of parameters: 1 id: 89 unit: private void readIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 261 end line: 350 size: 78 LOC McCabe index: 11 number of parameters: 1 id: 90 unit: onAnnotationFileChanged() file: client/client/app/components/ngbGenomeAnnotations/ngbGenomeAnnotations.controller.js start line: 64 end line: 141 size: 78 LOC McCabe index: 15 number of parameters: 1 id: 91 unit: export function renderSpliceJunctions() file: client/client/modules/render/tracks/bam/internal/renderer/features/spliceJunctionsRenderer.js start line: 3 end line: 80 size: 78 LOC McCabe index: 20 number of parameters: 3 id: 92 unit: getGenomicsTableGridColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 102 end line: 179 size: 77 LOC McCabe index: 9 number of parameters: 0 id: 93 unit: async navigateToTrack() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResultTable/ngbOrthoParaResultTable.controller.js start line: 193 end line: 272 size: 77 LOC McCabe index: 11 number of parameters: 1 id: 94 unit: fetchVCFAnnotation() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 369 end line: 445 size: 77 LOC McCabe index: 14 number of parameters: 0 id: 95 unit: renderExpandChromosomeArea() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 413 end line: 489 size: 77 LOC McCabe index: 9 number of parameters: 3 id: 96 unit: recoverCanonicalTranscript() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 493 end line: 572 size: 76 LOC McCabe index: 17 number of parameters: 2 id: 97 unit: setDrugsResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 223 end line: 298 size: 76 LOC McCabe index: 5 number of parameters: 1 id: 98 unit: private TIntv getIntv() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 399 end line: 473 size: 75 LOC McCabe index: 31 number of parameters: 1 id: 99 unit: getInternalPathwaysGridColumns() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 150 end line: 224 size: 75 LOC McCabe index: 10 number of parameters: 0 id: 100 unit: renderCoverageItem() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/coverage.js start line: 33 end line: 133 size: 75 LOC McCabe index: 17 number of parameters: 2 id: 101 unit: async navigateToTrack() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResultTable/ngbHomologeneResultTable.controller.js start line: 191 end line: 267 size: 74 LOC McCabe index: 10 number of parameters: 1 id: 102 unit: refreshList() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbFilterList.elements.js start line: 79 end line: 152 size: 74 LOC McCabe index: 18 number of parameters: 1 id: 103 unit: _changeWig() file: client/client/modules/render/tracks/wig/wigRenderer.js start line: 35 end line: 108 size: 74 LOC McCabe index: 14 number of parameters: 3 id: 104 unit: public Project create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 263 end line: 353 size: 73 LOC McCabe index: 4 number of parameters: 2 id: 105 unit: getAffectedGeneInfo() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 419 end line: 491 size: 73 LOC McCabe index: 29 number of parameters: 2 id: 106 unit: hoverFeature() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 646 end line: 719 size: 73 LOC McCabe index: 19 number of parameters: 1 id: 107 unit: rebuildContainer() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 304 end line: 376 size: 73 LOC McCabe index: 18 number of parameters: 2 id: 108 unit: public static void indexFasta() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaUtils.java start line: 100 end line: 184 size: 72 LOC McCabe index: 16 number of parameters: 2 id: 109 unit: updatePosition() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/axis-label.js start line: 395 end line: 466 size: 72 LOC McCabe index: 12 number of parameters: 1 id: 110 unit: _renderLegends() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 740 end line: 812 size: 72 LOC McCabe index: 8 number of parameters: 1 id: 111 unit: function processMenuEntry() file: client/client/modules/render/core/menu/buildMenu.js start line: 110 end line: 181 size: 71 LOC McCabe index: 12 number of parameters: 2 id: 112 unit: navigateToTracks() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 335 end line: 413 size: 70 LOC McCabe index: 20 number of parameters: 3 id: 113 unit: apply() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterList/ngbVariantsFilterList.controller.js start line: 152 end line: 221 size: 70 LOC McCabe index: 19 number of parameters: 0 id: 114 unit: _changeAminoAcidsGraph() file: client/client/modules/render/tracks/reference/referenceRenderer.js start line: 187 end line: 261 size: 70 LOC McCabe index: 21 number of parameters: 3 id: 115 unit: public Iterator query() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 558 end line: 631 size: 69 LOC McCabe index: 22 number of parameters: 3 id: 116 unit: private List parseSequences() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/sequence/NCBISequenceManager.java start line: 183 end line: 255 size: 69 LOC McCabe index: 11 number of parameters: 2 id: 117 unit: async _changeReference() file: client/client/app/shared/projectContext/index.js start line: 1606 end line: 1677 size: 69 LOC McCabe index: 26 number of parameters: 2 id: 118 unit: getRequest() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 227 end line: 295 size: 69 LOC McCabe index: 23 number of parameters: 0 id: 119 unit: apply() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbBookmarksFilterList.controller.js start line: 184 end line: 252 size: 69 LOC McCabe index: 16 number of parameters: 0 id: 120 unit: createScrollBar() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 609 end line: 681 size: 69 LOC McCabe index: 5 number of parameters: 0 id: 121 unit: transformCoordinateSystem() file: client/client/modules/render/tracks/wig/wigTransformer.js start line: 48 end line: 126 size: 69 LOC McCabe index: 16 number of parameters: 4 id: 122 unit: rebuildContainer() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/index.js start line: 579 end line: 647 size: 69 LOC McCabe index: 8 number of parameters: 2 id: 123 unit: getRequestFilter() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 266 end line: 333 size: 68 LOC McCabe index: 23 number of parameters: 1 id: 124 unit: _changeNucleotidesReferenceGraph() file: client/client/modules/render/tracks/reference/referenceRenderer.js start line: 47 end line: 118 size: 68 LOC McCabe index: 24 number of parameters: 3 id: 125 unit: renderDiscrete() file: client/client/modules/render/heatmap/renderer/color-scheme-renderer/index.js start line: 245 end line: 312 size: 68 LOC McCabe index: 9 number of parameters: 1 id: 126 unit: export default function Pagination() file: export-templates/target-identification/src/common/pagination/index.tsx start line: 34 end line: 101 size: 68 LOC McCabe index: 5 number of parameters: 1 id: 127 unit: changeState() file: client/client/app/shared/projectContext/index.js start line: 1164 end line: 1230 size: 67 LOC McCabe index: 16 number of parameters: 3 id: 128 unit: getDrugsTableGridColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 162 end line: 229 size: 67 LOC McCabe index: 8 number of parameters: 0 id: 129 unit: _renderAlternativeAlleleSequences() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 471 end line: 544 size: 67 LOC McCabe index: 16 number of parameters: 5 id: 130 unit: private MafFeature decode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/MafCodec.java start line: 113 end line: 179 size: 66 LOC McCabe index: 2 number of parameters: 1 id: 131 unit: getHomologeneResultGridColumns() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResult.service.js start line: 50 end line: 116 size: 66 LOC McCabe index: 6 number of parameters: 0 id: 132 unit: refreshList() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbFilterList.elements.js start line: 75 end line: 140 size: 66 LOC McCabe index: 17 number of parameters: 1 id: 133 unit: refreshList() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysFilterList/ngbFilterList.elements.js start line: 75 end line: 140 size: 66 LOC McCabe index: 17 number of parameters: 1 id: 134 unit: export default function Table() file: export-templates/target-identification/src/common/table/index.tsx start line: 178 end line: 243 size: 66 LOC McCabe index: 2 number of parameters: 1 id: 135 unit: _changeStateFromParams() file: client/client/app/app.controller.js start line: 216 end line: 281 size: 65 LOC McCabe index: 13 number of parameters: 1 id: 136 unit: async analyzeShortVariant() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 936 end line: 1003 size: 65 LOC McCabe index: 17 number of parameters: 2 id: 137 unit: getPatentsTableGridColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 100 end line: 165 size: 65 LOC McCabe index: 8 number of parameters: 0 id: 138 unit: apply() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbMotifsResultsFilterList.controller.js start line: 203 end line: 267 size: 65 LOC McCabe index: 19 number of parameters: 0 id: 139 unit: render() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/intraChromosomeFeatureRenderer.js start line: 24 end line: 88 size: 65 LOC McCabe index: 6 number of parameters: 7 id: 140 unit: private BedFile registerBedFileFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 323 end line: 394 size: 64 LOC McCabe index: 13 number of parameters: 1 id: 141 unit: private List loadStatisticVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 413 end line: 485 size: 64 LOC McCabe index: 19 number of parameters: 4 id: 142 unit: refreshHeatmapsList() file: client/client/app/shared/heatmapContext/index.js start line: 32 end line: 97 size: 64 LOC McCabe index: 21 number of parameters: 0 id: 143 unit: async getNavigationInfo() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.service.js start line: 40 end line: 103 size: 64 LOC McCabe index: 18 number of parameters: 3 id: 144 unit: public void genbankToGff() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/GenbankManager.java start line: 103 end line: 166 size: 63 LOC McCabe index: 15 number of parameters: 2 id: 145 unit: _loadTracks() file: client/client/app/shared/services/api.service.js start line: 417 end line: 483 size: 63 LOC McCabe index: 7 number of parameters: 1 id: 146 unit: getOrthoParaResultGridColumns() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResult.service.js start line: 49 end line: 112 size: 63 LOC McCabe index: 8 number of parameters: 0 id: 147 unit: public String generateUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/BiologicalDataItemManager.java start line: 140 end line: 208 size: 62 LOC McCabe index: 8 number of parameters: 5 id: 148 unit: getRequest() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 310 end line: 370 size: 61 LOC McCabe index: 22 number of parameters: 0 id: 149 unit: export default function drawStrandDirection() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/strandDrawing.js start line: 13 end line: 73 size: 61 LOC McCabe index: 8 number of parameters: 7 id: 150 unit: _drawSelection() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 366 end line: 426 size: 61 LOC McCabe index: 10 number of parameters: 4 id: 151 unit: rebuildBlocks() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 286 end line: 349 size: 61 LOC McCabe index: 22 number of parameters: 1 id: 152 unit: doFullRebuild() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 236 end line: 296 size: 61 LOC McCabe index: 15 number of parameters: 2 id: 153 unit: setDiseasesResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 163 end line: 222 size: 60 LOC McCabe index: 11 number of parameters: 1 id: 154 unit: calculateDomainsView() file: client/client/app/components/ngbHomologsPanel/ngbHomologsDomains/ngbHomologsDomains.controller.js start line: 37 end line: 96 size: 60 LOC McCabe index: 6 number of parameters: 1 id: 155 unit: async loadStrainLineages() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 55 end line: 114 size: 60 LOC McCabe index: 19 number of parameters: 1 id: 156 unit: analyzeBedItem() file: client/client/modules/render/tracks/bed/internal/data/bedTransformer.js start line: 170 end line: 233 size: 60 LOC McCabe index: 20 number of parameters: 1 id: 157 unit: constructor() file: client/client/modules/render/tracks/gene/index.js start line: 48 end line: 118 size: 60 LOC McCabe index: 9 number of parameters: 1 id: 158 unit: transformExpandedData() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 129 end line: 190 size: 60 LOC McCabe index: 16 number of parameters: 2 id: 159 unit: static textWithPrefix() file: client/client/modules/render/utilities/numberFormatter.js start line: 32 end line: 94 size: 60 LOC McCabe index: 22 number of parameters: 3 id: 160 unit: initStateFromParams() file: client/client/app/app.controller.js start line: 283 end line: 348 size: 59 LOC McCabe index: 16 number of parameters: 0 id: 161 unit: refreshList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbFilterList.elements.js start line: 40 end line: 98 size: 59 LOC McCabe index: 17 number of parameters: 1 id: 162 unit: refreshList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbFilterList.elements.js start line: 40 end line: 98 size: 59 LOC McCabe index: 18 number of parameters: 1 id: 163 unit: refreshList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbFilterList.elements.js start line: 40 end line: 98 size: 59 LOC McCabe index: 17 number of parameters: 1 id: 164 unit: refreshList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbFilterList.elements.js start line: 40 end line: 98 size: 59 LOC McCabe index: 18 number of parameters: 1 id: 165 unit: navigateToGene() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 329 end line: 387 size: 59 LOC McCabe index: 14 number of parameters: 0 id: 166 unit: refreshList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbFilterList.elements.js start line: 40 end line: 98 size: 59 LOC McCabe index: 17 number of parameters: 1 id: 167 unit: refreshList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbFilterList.elements.js start line: 40 end line: 98 size: 59 LOC McCabe index: 17 number of parameters: 1 id: 168 unit: refreshList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbFilterList.elements.js start line: 40 end line: 98 size: 59 LOC McCabe index: 17 number of parameters: 1 id: 169 unit: refreshList() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbFilterList.elements.js start line: 41 end line: 99 size: 59 LOC McCabe index: 17 number of parameters: 1 id: 170 unit: refreshList() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbFilterList.elements.js start line: 40 end line: 98 size: 59 LOC McCabe index: 17 number of parameters: 1 id: 171 unit: renderTick() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 210 end line: 268 size: 59 LOC McCabe index: 9 number of parameters: 5 id: 172 unit: static fromPlainData() file: client/client/modules/render/heatmap/utilities/heatmap-trie.js start line: 101 end line: 159 size: 59 LOC McCabe index: 14 number of parameters: 2 id: 173 unit: _renderEmptyGeneStructure() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 840 end line: 899 size: 59 LOC McCabe index: 5 number of parameters: 3 id: 174 unit: public NCBIGeneVO fetchGeneById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneManager.java start line: 159 end line: 228 size: 58 LOC McCabe index: 5 number of parameters: 1 id: 175 unit: constructor() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackSettings.controller.js start line: 12 end line: 76 size: 58 LOC McCabe index: 11 number of parameters: 5 id: 176 unit: getTargetsTableGridColumns() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 159 end line: 216 size: 57 LOC McCabe index: 6 number of parameters: 0 id: 177 unit: highlightCurrentHoveredNode() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesGraph/ngbDiseasesGraph.controller.js start line: 63 end line: 119 size: 57 LOC McCabe index: 11 number of parameters: 0 id: 178 unit: async loadData() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 203 end line: 259 size: 57 LOC McCabe index: 10 number of parameters: 2 id: 179 unit: async getNucleotideSequence() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 95 end line: 153 size: 57 LOC McCabe index: 14 number of parameters: 1 id: 180 unit: initialize() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/binary-tree-graphics.js start line: 60 end line: 120 size: 57 LOC McCabe index: 13 number of parameters: 1 id: 181 unit: initialize() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 63 end line: 127 size: 57 LOC McCabe index: 6 number of parameters: 0 id: 182 unit: public void readAndSaveData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homolog/HomologManager.java start line: 220 end line: 275 size: 56 LOC McCabe index: 6 number of parameters: 2 id: 183 unit: constructor() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 47 end line: 118 size: 56 LOC McCabe index: 10 number of parameters: 7 id: 184 unit: save() file: client/client/app/shared/components/ngbMainToolbar/ngbBookmark/ngbBookmarkSaveDlg.controller.js start line: 76 end line: 131 size: 56 LOC McCabe index: 8 number of parameters: 1 id: 185 unit: constructor() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantDensityDiagram/ngbVariantDensityDiagram.controller.js start line: 13 end line: 75 size: 56 LOC McCabe index: 2 number of parameters: 7 id: 186 unit: function groupedBySpecies() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/utilities/autocompleteFunctions.js start line: 15 end line: 70 size: 56 LOC McCabe index: 4 number of parameters: 1 id: 187 unit: constructor() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbFilterList.elements.js start line: 16 end line: 71 size: 56 LOC McCabe index: 10 number of parameters: 2 id: 188 unit: constructor() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksTableFilter.controller.js start line: 7 end line: 64 size: 56 LOC McCabe index: 5 number of parameters: 5 id: 189 unit: apply() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbGenesFilterList.controller.js start line: 148 end line: 203 size: 56 LOC McCabe index: 15 number of parameters: 0 id: 190 unit: hoverItem() file: client/client/modules/render/tracks/wig/wigRenderer.js start line: 110 end line: 172 size: 56 LOC McCabe index: 10 number of parameters: 4 id: 191 unit: initialize() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 177 end line: 232 size: 56 LOC McCabe index: 5 number of parameters: 2 id: 192 unit: navigateToDatasets() file: client/client/modules/render/heatmap/navigation/index.js start line: 99 end line: 154 size: 56 LOC McCabe index: 13 number of parameters: 1 id: 193 unit: color: getAvailableColor() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 301 end line: 458 size: 56 LOC McCabe index: 17 number of parameters: 0 id: 194 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 56 end line: 119 size: 55 LOC McCabe index: 1 number of parameters: 0 id: 195 unit: public Document buildDocument() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/BigVcfDocumentBuilder.java start line: 118 end line: 182 size: 55 LOC McCabe index: 5 number of parameters: 2 id: 196 unit: getSequencesTableGridColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 142 end line: 197 size: 55 LOC McCabe index: 6 number of parameters: 0 id: 197 unit: navigateToGene() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 220 end line: 274 size: 55 LOC McCabe index: 14 number of parameters: 1 id: 198 unit: export default function helper() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackResizePreference/ngbTrackResizePreference.helper.js start line: 15 end line: 72 size: 55 LOC McCabe index: 16 number of parameters: 3 id: 199 unit: buildAnnotationStyle() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbPathwayAnnotationMark/ngbPathwayAnnotationMark.controller.js start line: 27 end line: 81 size: 55 LOC McCabe index: 8 number of parameters: 0 id: 200 unit: render() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 494 end line: 548 size: 55 LOC McCabe index: 19 number of parameters: 1 id: 201 unit: _renderEmptyBlock() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/transcriptFeatureRenderer.js start line: 203 end line: 257 size: 55 LOC McCabe index: 2 number of parameters: 1 id: 202 unit: getLayoutInfo() file: client/client/modules/render/heatmap/renderer/viewport-renderer/index.js start line: 168 end line: 222 size: 55 LOC McCabe index: 7 number of parameters: 2 id: 203 unit: navigateToGene() file: client/client/modules/render/heatmap/navigation/index.js start line: 161 end line: 215 size: 55 LOC McCabe index: 14 number of parameters: 1 id: 204 unit: private List loadStatisticVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 376 end line: 435 size: 54 LOC McCabe index: 15 number of parameters: 6 id: 205 unit: public List loadDirectoryContents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1971 end line: 2035 size: 54 LOC McCabe index: 15 number of parameters: 1 id: 206 unit: loadReferenceTrack() file: client/client/dataServices/genome/genome-data-service.js start line: 25 end line: 79 size: 54 LOC McCabe index: 8 number of parameters: 1 id: 207 unit: setDiseasesResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 171 end line: 225 size: 54 LOC McCabe index: 4 number of parameters: 1 id: 208 unit: getDiseasesTableGridColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 210 end line: 264 size: 54 LOC McCabe index: 6 number of parameters: 0 id: 209 unit: async searchPatentsByProteinSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 392 end line: 445 size: 54 LOC McCabe index: 17 number of parameters: 0 id: 210 unit: selectItem() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 243 end line: 301 size: 54 LOC McCabe index: 17 number of parameters: 3 id: 211 unit: async loadData() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 183 end line: 236 size: 54 LOC McCabe index: 8 number of parameters: 2 id: 212 unit: layout() file: client/client/modules/render/heatmap/heatmap-view.js start line: 473 end line: 534 size: 54 LOC McCabe index: 4 number of parameters: 1 id: 213 unit: protected VcfIndexEntry createSpecificEntry() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/BigVcfDocumentBuilder.java start line: 213 end line: 272 size: 53 LOC McCabe index: 13 number of parameters: 1 id: 214 unit: refreshList() file: client/client/app/shared/filter/filterList/ngbFilterList.elements.js start line: 31 end line: 83 size: 53 LOC McCabe index: 17 number of parameters: 1 id: 215 unit: constructor() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantTypeDiagram/ngbVariantTypeDiagram.controller.js start line: 22 end line: 79 size: 53 LOC McCabe index: 2 number of parameters: 7 id: 216 unit: getPermissionsColumns() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 148 end line: 200 size: 53 LOC McCabe index: 1 number of parameters: 0 id: 217 unit: getPermissionsColumns() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.service.js start line: 93 end line: 145 size: 53 LOC McCabe index: 1 number of parameters: 0 id: 218 unit: setChainMaterials() file: client/client/app/components/ngbMolecularViewer/ngbMiew/ngbMiew.controller.js start line: 204 end line: 261 size: 53 LOC McCabe index: 19 number of parameters: 0 id: 219 unit: loadTrackInstance() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 441 end line: 496 size: 53 LOC McCabe index: 11 number of parameters: 0 id: 220 unit: async rebuildRanges() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 281 end line: 333 size: 53 LOC McCabe index: 10 number of parameters: 4 id: 221 unit: manageEndLabels() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 42 end line: 95 size: 53 LOC McCabe index: 10 number of parameters: 2 id: 222 unit: static transform() file: client/client/modules/render/tracks/reference/referenceTransformer.js start line: 6 end line: 119 size: 53 LOC McCabe index: 12 number of parameters: 2 id: 223 unit: getZoneMask() file: client/client/modules/render/utilities/zonesManager.js start line: 222 end line: 275 size: 53 LOC McCabe index: 14 number of parameters: 2 id: 224 unit: export function useFilteredData() file: export-templates/target-identification/src/model/filtered-data.ts start line: 240 end line: 292 size: 53 LOC McCabe index: 5 number of parameters: 2 id: 225 unit: public WigFile registerWigFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/FacadeWigManager.java start line: 129 end line: 182 size: 52 LOC McCabe index: 13 number of parameters: 1 id: 226 unit: private void writeCoverageIntervals() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageManager.java start line: 260 end line: 312 size: 52 LOC McCabe index: 5 number of parameters: 3 id: 227 unit: private MotifSearchResult searchChromosomeMotifs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 375 end line: 430 size: 52 LOC McCabe index: 16 number of parameters: 3 id: 228 unit: async refreshLocalDatasets() file: client/client/app/shared/projectContext/index.js start line: 1048 end line: 1101 size: 52 LOC McCabe index: 9 number of parameters: 0 id: 229 unit: constructor() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbFilterList.elements.js start line: 16 end line: 67 size: 52 LOC McCabe index: 9 number of parameters: 2 id: 230 unit: constructor() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysFilterList/ngbFilterList.elements.js start line: 16 end line: 67 size: 52 LOC McCabe index: 9 number of parameters: 2 id: 231 unit: template: require() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.run.js start line: 71 end line: 122 size: 52 LOC McCabe index: 7 number of parameters: 1 id: 232 unit: render() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderProcessor.js start line: 37 end line: 93 size: 52 LOC McCabe index: 14 number of parameters: 4 id: 233 unit: changeDividers() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 278 end line: 329 size: 52 LOC McCabe index: 8 number of parameters: 5 id: 234 unit: initialize() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 186 end line: 241 size: 52 LOC McCabe index: 7 number of parameters: 1 id: 235 unit: protected VcfIndexEntry createSpecificEntry() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfDocumentBuilder.java start line: 128 end line: 188 size: 51 LOC McCabe index: 11 number of parameters: 1 id: 236 unit: static analyzeAlternativeAlleles() file: client/client/dataServices/vcf/vcf-analyzer.js start line: 217 end line: 272 size: 51 LOC McCabe index: 9 number of parameters: 1 id: 237 unit: _mapUsersData() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.service.js start line: 30 end line: 80 size: 51 LOC McCabe index: 16 number of parameters: 1 id: 238 unit: recoverAlternativeExonStructureForDuplication() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 716 end line: 770 size: 51 LOC McCabe index: 9 number of parameters: 2 id: 239 unit: projectChanged() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 315 end line: 366 size: 51 LOC McCabe index: 11 number of parameters: 0 id: 240 unit: getGenomicsTableGridColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 102 end line: 153 size: 51 LOC McCabe index: 6 number of parameters: 0 id: 241 unit: sortChanged() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 343 end line: 395 size: 51 LOC McCabe index: 10 number of parameters: 2 id: 242 unit: analyzeBoundaries() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/geneFeatureRenderer.js start line: 42 end line: 94 size: 51 LOC McCabe index: 11 number of parameters: 2 id: 243 unit: private void addVcfDocumentInfoFields() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfDocumentBuilder.java start line: 190 end line: 241 size: 50 LOC McCabe index: 8 number of parameters: 2 id: 244 unit: rebuildStructuralVariantVisualizerData() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 326 end line: 378 size: 50 LOC McCabe index: 13 number of parameters: 1 id: 245 unit: controller: function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetLaunchDialog/ngbTargetLaunchDialog.run.js start line: 23 end line: 186 size: 50 LOC McCabe index: 13 number of parameters: 1 id: 246 unit: function createNcigarRender() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 82 end line: 131 size: 50 LOC McCabe index: 8 number of parameters: 3 id: 247 unit: render() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/deletionFeatureRenderer.js start line: 20 end line: 70 size: 50 LOC McCabe index: 2 number of parameters: 7 id: 248 unit: constructor() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/featureRenderer.js start line: 13 end line: 62 size: 50 LOC McCabe index: 1 number of parameters: 2 id: 249 unit: rebuildContainer() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/coverage.js start line: 135 end line: 184 size: 50 LOC McCabe index: 7 number of parameters: 2 id: 250 unit: export default function splitChromosomeByDeletions() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/utilities/split-chromosome-by-deletions.js start line: 3 end line: 52 size: 50 LOC McCabe index: 5 number of parameters: 1 id: 251 unit: static fromData() file: client/client/modules/render/heatmap/utilities/heatmap-trie.js start line: 44 end line: 93 size: 50 LOC McCabe index: 11 number of parameters: 2 id: 252 unit: metadataLoaded() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 188 end line: 237 size: 50 LOC McCabe index: 8 number of parameters: 0 id: 253 unit: _renderBreakpointConnection() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 1375 end line: 1425 size: 50 LOC McCabe index: 14 number of parameters: 6 id: 254 unit: groupColumnsProcessor() file: client/client/modules/uiGridGroupColumns/ui-grid-group-columns.js start line: 75 end line: 147 size: 50 LOC McCabe index: 8 number of parameters: 1 id: 255 unit: function Section() file: export-templates/target-identification/src/common/section/index.tsx start line: 41 end line: 90 size: 50 LOC McCabe index: 2 number of parameters: 1 id: 256 unit: public List loadProjectTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 126 end line: 182 size: 49 LOC McCabe index: 10 number of parameters: 2 id: 257 unit: setHomologsData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 225 end line: 273 size: 49 LOC McCabe index: 7 number of parameters: 1 id: 258 unit: setHomologeneData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 275 end line: 323 size: 49 LOC McCabe index: 6 number of parameters: 1 id: 259 unit: async askQuestion() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 191 end line: 239 size: 49 LOC McCabe index: 5 number of parameters: 1 id: 260 unit: changeMask() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 364 end line: 412 size: 49 LOC McCabe index: 17 number of parameters: 1 id: 261 unit: $onInit() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsTableFilter.controller.js start line: 25 end line: 74 size: 49 LOC McCabe index: 14 number of parameters: 0 id: 262 unit: constructor() file: client/client/modules/render/core/track/baseTrack.js start line: 17 end line: 76 size: 49 LOC McCabe index: 7 number of parameters: 1 id: 263 unit: addVariantsLayerIndices() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 275 end line: 333 size: 49 LOC McCabe index: 9 number of parameters: 1 id: 264 unit: _renderAlternativeAlleleUsingDetailedMode() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 248 end line: 300 size: 49 LOC McCabe index: 11 number of parameters: 1 id: 265 unit: private ApplicationOptions getOptions() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/Application.java start line: 358 end line: 405 size: 48 LOC McCabe index: 4 number of parameters: 0 id: 266 unit: private void makeHistogramFromIterator() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 406 end line: 460 size: 48 LOC McCabe index: 9 number of parameters: 2 id: 267 unit: public List fillSequenceOfGCFromGCFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 261 end line: 332 size: 48 LOC McCabe index: 7 number of parameters: 5 id: 268 unit: export default function config() file: client/client/app/app.config.js start line: 1 end line: 57 size: 48 LOC McCabe index: 1 number of parameters: 1 id: 269 unit: getPatentsTableGridColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 100 end line: 148 size: 48 LOC McCabe index: 5 number of parameters: 0 id: 270 unit: changeMask() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 225 end line: 272 size: 48 LOC McCabe index: 17 number of parameters: 1 id: 271 unit: _renderArrow() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 234 end line: 283 size: 48 LOC McCabe index: 9 number of parameters: 2 id: 272 unit: render() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 261 end line: 314 size: 48 LOC McCabe index: 17 number of parameters: 2 id: 273 unit: buildVariantEndLabel() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 440 end line: 487 size: 48 LOC McCabe index: 12 number of parameters: 1 id: 274 unit: _initComponent() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 311 end line: 368 size: 47 LOC McCabe index: 11 number of parameters: 2 id: 275 unit: mergeExonsSequences() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 884 end line: 934 size: 47 LOC McCabe index: 10 number of parameters: 1 id: 276 unit: apply() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterRange/ngbVariantsFilterRange.controller.js start line: 35 end line: 81 size: 47 LOC McCabe index: 17 number of parameters: 0 id: 277 unit: async getAminoAcidSequence() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 155 end line: 201 size: 47 LOC McCabe index: 7 number of parameters: 1 id: 278 unit: template: require() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackCoverageSettings/ngbTrackCoverageSettings.run.js start line: 10 end line: 56 size: 47 LOC McCabe index: 16 number of parameters: 1 id: 279 unit: renderLineSlice() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderProcessor.js start line: 103 end line: 149 size: 47 LOC McCabe index: 4 number of parameters: 1 id: 280 unit: renderScroller() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 249 end line: 295 size: 47 LOC McCabe index: 2 number of parameters: 0 id: 281 unit: _checkPosition() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 591 end line: 637 size: 47 LOC McCabe index: 16 number of parameters: 2 id: 282 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 161 end line: 208 size: 46 LOC McCabe index: 16 number of parameters: 1 id: 283 unit: duplicateTrack() file: client/client/app/shared/projectContext/index.js start line: 772 end line: 817 size: 46 LOC McCabe index: 8 number of parameters: 1 id: 284 unit: fitTracksHeights() file: client/client/app/components/ngbTracksView/ngbTracksView.controller.js start line: 265 end line: 310 size: 46 LOC McCabe index: 14 number of parameters: 0 id: 285 unit: controller: function() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackCoverageSettings/ngbTrackCoverageSettings.run.js start line: 11 end line: 56 size: 46 LOC McCabe index: 16 number of parameters: 1 id: 286 unit: render() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/statisticsFeatureRenderer.js start line: 36 end line: 81 size: 46 LOC McCabe index: 3 number of parameters: 7 id: 287 unit: onClick() file: client/client/modules/render/tracks/vcf/index.js start line: 317 end line: 370 size: 46 LOC McCabe index: 12 number of parameters: 2 id: 288 unit: renderBlatRegion() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 341 end line: 392 size: 46 LOC McCabe index: 4 number of parameters: 2 id: 289 unit: _addExpandCollapseButton() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 647 end line: 696 size: 46 LOC McCabe index: 5 number of parameters: 4 id: 290 unit: private List reconstructAminoAcidByTriples() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceReconstructionManager.java start line: 494 end line: 546 size: 45 LOC McCabe index: 8 number of parameters: 8 id: 291 unit: private SegFile registerSegFileFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegManager.java start line: 208 end line: 255 size: 45 LOC McCabe index: 6 number of parameters: 1 id: 292 unit: private void readHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 284 end line: 331 size: 45 LOC McCabe index: 8 number of parameters: 4 id: 293 unit: private MotifSearchResult searchWholeGenomeMotifs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 468 end line: 512 size: 45 LOC McCabe index: 9 number of parameters: 3 id: 294 unit: applyTrackState() file: client/client/app/shared/projectContext/index.js start line: 1243 end line: 1287 size: 45 LOC McCabe index: 8 number of parameters: 2 id: 295 unit: filter() file: client/client/app/shared/projectContext/index.js start line: 2145 end line: 2189 size: 45 LOC McCabe index: 9 number of parameters: 1 id: 296 unit: getVcfRequestFilter() file: client/client/app/shared/projectContext/index.js start line: 2338 end line: 2384 size: 45 LOC McCabe index: 14 number of parameters: 1 id: 297 unit: getDrugsTableGridColumns() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 157 end line: 202 size: 45 LOC McCabe index: 5 number of parameters: 0 id: 298 unit: color: calculateColor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 256 end line: 301 size: 45 LOC McCabe index: 6 number of parameters: 1 id: 299 unit: checkDependency() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksTableFilter.controller.js start line: 70 end line: 114 size: 45 LOC McCabe index: 9 number of parameters: 0 id: 300 unit: async loadPDB() file: client/client/app/components/ngbMolecularViewer/ngbMolecularViewer.service.js start line: 42 end line: 87 size: 45 LOC McCabe index: 17 number of parameters: 2 id: 301 unit: _renderTranscriptsBlock() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 1173 end line: 1222 size: 45 LOC McCabe index: 6 number of parameters: 2 id: 302 unit: public String getResultFromURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/HttpDataManager.java start line: 145 end line: 201 size: 44 LOC McCabe index: 8 number of parameters: 3 id: 303 unit: private MotifSearchResult searchRegionMotifs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 305 end line: 350 size: 44 LOC McCabe index: 11 number of parameters: 3 id: 304 unit: function _calculateExpression() file: client/client/dataServices/utils/highlight-condition-service.js start line: 183 end line: 226 size: 44 LOC McCabe index: 13 number of parameters: 2 id: 305 unit: showPopover() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 133 end line: 177 size: 44 LOC McCabe index: 4 number of parameters: 2 id: 306 unit: async loadCurrentDirectory() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 329 end line: 372 size: 44 LOC McCabe index: 14 number of parameters: 0 id: 307 unit: loadTracks() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFile.controller.js start line: 64 end line: 111 size: 44 LOC McCabe index: 7 number of parameters: 1 id: 308 unit: template: require() file: client/client/app/shared/components/ngbLLM/ngbLLM.dialog.run.js start line: 16 end line: 59 size: 44 LOC McCabe index: 9 number of parameters: 1 id: 309 unit: getDiseases() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 238 end line: 281 size: 44 LOC McCabe index: 4 number of parameters: 0 id: 310 unit: setArtificialTrack() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 443 end line: 487 size: 44 LOC McCabe index: 6 number of parameters: 0 id: 311 unit: export function search() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 358 end line: 402 size: 44 LOC McCabe index: 22 number of parameters: 2 id: 312 unit: setDefaultParams() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResult.controller.js start line: 40 end line: 83 size: 44 LOC McCabe index: 9 number of parameters: 0 id: 313 unit: getTooltipDataObject() file: client/client/modules/render/tracks/blast/index.js start line: 100 end line: 143 size: 44 LOC McCabe index: 12 number of parameters: 1 id: 314 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/GrantPermissionHandler.java start line: 99 end line: 150 size: 43 LOC McCabe index: 11 number of parameters: 2 id: 315 unit: private void readHeader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 257 end line: 302 size: 43 LOC McCabe index: 9 number of parameters: 0 id: 316 unit: public boolean isGranted() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionGrantingStrategyImpl.java start line: 55 end line: 123 size: 43 LOC McCabe index: 15 number of parameters: 4 id: 317 unit: private static BiologicalDataItem mapSpecialFields() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 396 end line: 438 size: 43 LOC McCabe index: 13 number of parameters: 3 id: 318 unit: public Page search() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageManager.java start line: 158 end line: 206 size: 43 LOC McCabe index: 9 number of parameters: 1 id: 319 unit: public List getVariantsGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 367 end line: 411 size: 43 LOC McCabe index: 5 number of parameters: 4 id: 320 unit: private VcfFile createVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 807 end line: 856 size: 43 LOC McCabe index: 8 number of parameters: 2 id: 321 unit: private void fillGeneInteractionsList() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 311 end line: 369 size: 43 LOC McCabe index: 6 number of parameters: 2 id: 322 unit: public void makeGeneIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1490 end line: 1538 size: 43 LOC McCabe index: 6 number of parameters: 3 id: 323 unit: set currentMode() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 127 end line: 174 size: 43 LOC McCabe index: 14 number of parameters: 1 id: 324 unit: async geneTrackChanged() file: client/client/app/components/ngbMolecularViewer/ngbMolecularViewer.controller.js start line: 88 end line: 136 size: 43 LOC McCabe index: 9 number of parameters: 0 id: 325 unit: constructor() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterList/ngbVariantsFilterList.controller.js start line: 18 end line: 60 size: 43 LOC McCabe index: 12 number of parameters: 3 id: 326 unit: fetchVCFInfoFields() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 325 end line: 367 size: 43 LOC McCabe index: 11 number of parameters: 0 id: 327 unit: constructor() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 96 end line: 139 size: 43 LOC McCabe index: 6 number of parameters: 9 id: 328 unit: transform() file: client/client/modules/render/core/viewport/viewport.js start line: 292 end line: 350 size: 43 LOC McCabe index: 14 number of parameters: 5 id: 329 unit: getTooltipDataObject() file: client/client/modules/render/tracks/gene/index.js start line: 350 end line: 392 size: 43 LOC McCabe index: 16 number of parameters: 2 id: 330 unit: doPartialRebuild() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 312 end line: 354 size: 43 LOC McCabe index: 12 number of parameters: 2 id: 331 unit: export function getColumnConfig() file: export-templates/target-identification/src/common/table/utilities.ts start line: 15 end line: 57 size: 43 LOC McCabe index: 7 number of parameters: 1 id: 332 unit: public final Map readAclsById() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 230 end line: 297 size: 42 LOC McCabe index: 11 number of parameters: 2 id: 333 unit: public Document buildDocument() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/AbstractDocumentBuilder.java start line: 76 end line: 126 size: 42 LOC McCabe index: 4 number of parameters: 2 id: 334 unit: private VcfFile createVcfGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 748 end line: 791 size: 42 LOC McCabe index: 5 number of parameters: 1 id: 335 unit: public SearchResult searchHomolog() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homolog/HomologManager.java start line: 102 end line: 146 size: 42 LOC McCabe index: 4 number of parameters: 1 id: 336 unit: async recoverTracksState() file: client/client/app/shared/projectContext/index.js start line: 1550 end line: 1593 size: 42 LOC McCabe index: 16 number of parameters: 1 id: 337 unit: export default function parseBtop() file: client/client/app/shared/blastContext/parse-btop.js start line: 26 end line: 67 size: 42 LOC McCabe index: 12 number of parameters: 1 id: 338 unit: export function controller() file: client/client/app/components/ngbLog/ngbLog.component.js start line: 2 end line: 54 size: 42 LOC McCabe index: 1 number of parameters: 6 id: 339 unit: async getPathwayTree() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.service.js start line: 26 end line: 67 size: 42 LOC McCabe index: 6 number of parameters: 1 id: 340 unit: getOpenDatasetPayload() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 220 end line: 261 size: 42 LOC McCabe index: 9 number of parameters: 2 id: 341 unit: function postStateMutatorFn() file: client/client/modules/render/tracks/common/scaleModes/menuHelpers.js start line: 13 end line: 54 size: 42 LOC McCabe index: 12 number of parameters: 4 id: 342 unit: static _buildTicks() file: client/client/modules/render/tracks/ruler/rulerTransformer.js start line: 7 end line: 48 size: 42 LOC McCabe index: 5 number of parameters: 4 id: 343 unit: onHover() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 382 end line: 423 size: 42 LOC McCabe index: 13 number of parameters: 1 id: 344 unit: export function useSorting() file: export-templates/target-identification/src/common/table/utilities.ts start line: 63 end line: 104 size: 42 LOC McCabe index: 7 number of parameters: 0 id: 345 unit: function Option() file: export-templates/target-identification/src/common/select/index.tsx start line: 52 end line: 93 size: 42 LOC McCabe index: 4 number of parameters: 1 id: 346 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/user/CreateUserHandler.java start line: 79 end line: 125 size: 41 LOC McCabe index: 7 number of parameters: 2 id: 347 unit: public boolean hasNext() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/SimpleMotifSearchIterator.java start line: 73 end line: 113 size: 41 LOC McCabe index: 15 number of parameters: 0 id: 348 unit: private void readNextRecord() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 511 end line: 553 size: 41 LOC McCabe index: 14 number of parameters: 0 id: 349 unit: public ProteinSequence loadProteinSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceManager.java start line: 227 end line: 270 size: 41 LOC McCabe index: 4 number of parameters: 1 id: 350 unit: private Throwable readPartOfGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 285 end line: 331 size: 41 LOC McCabe index: 4 number of parameters: 7 id: 351 unit: getWigTrack() file: client/client/dataServices/wig/wig-data-service.js start line: 11 end line: 51 size: 41 LOC McCabe index: 9 number of parameters: 1 id: 352 unit: async updateParasiteTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 788 end line: 828 size: 41 LOC McCabe index: 9 number of parameters: 0 id: 353 unit: getSearchMotifsResults() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 234 end line: 274 size: 41 LOC McCabe index: 8 number of parameters: 2 id: 354 unit: getSelectedTracks() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 45 end line: 89 size: 41 LOC McCabe index: 19 number of parameters: 2 id: 355 unit: constructor() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesTableFilter.controller.js start line: 8 end line: 48 size: 41 LOC McCabe index: 7 number of parameters: 3 id: 356 unit: getSettings() file: client/client/modules/render/tracks/bam/index.js start line: 170 end line: 219 size: 41 LOC McCabe index: 15 number of parameters: 0 id: 357 unit: buildInterChromosomeLinks() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 376 end line: 416 size: 41 LOC McCabe index: 5 number of parameters: 2 id: 358 unit: fetchTree() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 156 end line: 197 size: 41 LOC McCabe index: 5 number of parameters: 0 id: 359 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/UserGroupUserRemovingHandler.java start line: 77 end line: 122 size: 40 LOC McCabe index: 9 number of parameters: 2 id: 360 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/UserGroupUserAddingHandler.java start line: 74 end line: 119 size: 40 LOC McCabe index: 9 number of parameters: 2 id: 361 unit: public void processLogout() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/OptionalSAMLLogoutFilter.java start line: 122 end line: 174 size: 40 LOC McCabe index: 9 number of parameters: 3 id: 362 unit: void splitByChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigProcessor.java start line: 69 end line: 112 size: 40 LOC McCabe index: 8 number of parameters: 3 id: 363 unit: public BiologicalDataItem deleteFileByBioItemId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemManager.java start line: 166 end line: 206 size: 40 LOC McCabe index: 11 number of parameters: 1 id: 364 unit: public List readGenesFromIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 194 end line: 242 size: 40 LOC McCabe index: 6 number of parameters: 4 id: 365 unit: private boolean addGenesToIntervalMap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 496 end line: 540 size: 40 LOC McCabe index: 4 number of parameters: 7 id: 366 unit: private void processNotes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 634 end line: 673 size: 40 LOC McCabe index: 6 number of parameters: 4 id: 367 unit: public VcfFilterInfo getFiltersInfo() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 431 end line: 477 size: 40 LOC McCabe index: 4 number of parameters: 1 id: 368 unit: private MotifSearchResult searchGeneMotifs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 262 end line: 303 size: 40 LOC McCabe index: 4 number of parameters: 4 id: 369 unit: function Bookmark() file: client/client/app/shared/components/ngbMainToolbar/ngbBookmark/ngbBookmarkSaveDlg.controller.js start line: 138 end line: 189 size: 40 LOC McCabe index: 7 number of parameters: 13 id: 370 unit: getMethylationType() file: client/client/app/shared/bisulfiteModeContext/index.js start line: 243 end line: 282 size: 40 LOC McCabe index: 16 number of parameters: 4 id: 371 unit: _processTracks() file: client/client/app/shared/services/api.service.js start line: 319 end line: 359 size: 40 LOC McCabe index: 17 number of parameters: 3 id: 372 unit: apply() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbDiseasesTargetsFilterList.controller.js start line: 170 end line: 209 size: 40 LOC McCabe index: 12 number of parameters: 0 id: 373 unit: getRequest() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 174 end line: 213 size: 40 LOC McCabe index: 11 number of parameters: 0 id: 374 unit: async startSession() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 141 end line: 180 size: 40 LOC McCabe index: 6 number of parameters: 1 id: 375 unit: getRequest() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 255 end line: 294 size: 40 LOC McCabe index: 12 number of parameters: 0 id: 376 unit: constructor() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbGenesFilterList.controller.js start line: 15 end line: 54 size: 40 LOC McCabe index: 9 number of parameters: 4 id: 377 unit: getMotifsResultsGridColumns() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.service.js start line: 24 end line: 65 size: 40 LOC McCabe index: 7 number of parameters: 0 id: 378 unit: generateAnnotationBackground() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbPathwayAnnotationMark/ngbPathwayAnnotationMark.service.js start line: 17 end line: 56 size: 40 LOC McCabe index: 6 number of parameters: 2 id: 379 unit: showTooltip() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbPathwayAnnotationMark/ngbPathwayAnnotationMark.service.js start line: 58 end line: 97 size: 40 LOC McCabe index: 7 number of parameters: 2 id: 380 unit: renderSelection() file: client/client/modules/render/heatmap/renderer/viewport-renderer/index.js start line: 224 end line: 263 size: 40 LOC McCabe index: 5 number of parameters: 0 id: 381 unit: findBlockByItem() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 245 end line: 284 size: 40 LOC McCabe index: 7 number of parameters: 2 id: 382 unit: public String next() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 509 end line: 548 size: 39 LOC McCabe index: 16 number of parameters: 0 id: 383 unit: public Object loadUserBySAML() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLUserDetailsServiceImpl.java start line: 99 end line: 146 size: 39 LOC McCabe index: 7 number of parameters: 1 id: 384 unit: private String makeUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/BiologicalDataItemManager.java start line: 210 end line: 255 size: 39 LOC McCabe index: 7 number of parameters: 6 id: 385 unit: public Track loadProteinSequenceWithVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceManager.java start line: 176 end line: 223 size: 39 LOC McCabe index: 5 number of parameters: 2 id: 386 unit: private Genotype getGenotype() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 295 end line: 334 size: 39 LOC McCabe index: 7 number of parameters: 9 id: 387 unit: private static VariationType determineInDel() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 568 end line: 609 size: 39 LOC McCabe index: 17 number of parameters: 2 id: 388 unit: public VcfFieldValues loadFieldValues() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 525 end line: 563 size: 39 LOC McCabe index: 2 number of parameters: 3 id: 389 unit: public NCBIGeneVO parseGeneInfo() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 166 end line: 215 size: 39 LOC McCabe index: 3 number of parameters: 1 id: 390 unit: public String getResultFromHttp() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/HttpDataManager.java start line: 260 end line: 308 size: 39 LOC McCabe index: 6 number of parameters: 2 id: 391 unit: public Page loadPathways() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 211 end line: 254 size: 39 LOC McCabe index: 9 number of parameters: 1 id: 392 unit: function _parseExpression() file: client/client/dataServices/utils/highlight-condition-service.js start line: 20 end line: 59 size: 39 LOC McCabe index: 10 number of parameters: 1 id: 393 unit: getNextVariations() file: client/client/dataServices/vcf/vcf-data-service.js start line: 66 end line: 104 size: 39 LOC McCabe index: 10 number of parameters: 3 id: 394 unit: getPreviousVariations() file: client/client/dataServices/vcf/vcf-data-service.js start line: 106 end line: 144 size: 39 LOC McCabe index: 10 number of parameters: 3 id: 395 unit: constructor() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 25 end line: 65 size: 39 LOC McCabe index: 1 number of parameters: 5 id: 396 unit: rowClick() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 289 end line: 327 size: 39 LOC McCabe index: 12 number of parameters: 1 id: 397 unit: async postNewParasiteTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 578 end line: 616 size: 39 LOC McCabe index: 5 number of parameters: 0 id: 398 unit: rowClick() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.controller.js start line: 145 end line: 183 size: 39 LOC McCabe index: 8 number of parameters: 1 id: 399 unit: function _preprocessNode() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 43 end line: 93 size: 39 LOC McCabe index: 14 number of parameters: 2 id: 400 unit: export function toPlainList() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 404 end line: 445 size: 39 LOC McCabe index: 18 number of parameters: 3 id: 401 unit: variationRequest() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.events.js start line: 263 end line: 301 size: 39 LOC McCabe index: 6 number of parameters: 4 id: 402 unit: function parseConfigCSV() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 29 end line: 67 size: 39 LOC McCabe index: 8 number of parameters: 1 id: 403 unit: _renderSpliceJunctions() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 499 end line: 537 size: 39 LOC McCabe index: 3 number of parameters: 2 id: 404 unit: getGlobalBounds() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 241 end line: 279 size: 39 LOC McCabe index: 3 number of parameters: 1 id: 405 unit: draw() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 220 end line: 258 size: 39 LOC McCabe index: 21 number of parameters: 0 id: 406 unit: static parse() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 56 end line: 94 size: 39 LOC McCabe index: 6 number of parameters: 1 id: 407 unit: function useSliced() file: export-templates/target-identification/src/common/select/index.tsx start line: 461 end line: 499 size: 39 LOC McCabe index: 4 number of parameters: 2 id: 408 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/dataset/DatasetRegistrationHandler.java start line: 103 end line: 142 size: 38 LOC McCabe index: 7 number of parameters: 2 id: 409 unit: public Set searchGenesInVcfFiles() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 973 end line: 1018 size: 38 LOC McCabe index: 5 number of parameters: 2 id: 410 unit: protected void addExtraFeatureFields() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfDocumentBuilder.java start line: 63 end line: 106 size: 38 LOC McCabe index: 5 number of parameters: 2 id: 411 unit: public String toBigMafString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 382 end line: 419 size: 38 LOC McCabe index: 7 number of parameters: 0 id: 412 unit: public void add() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 131 end line: 173 size: 38 LOC McCabe index: 11 number of parameters: 1 id: 413 unit: public static FeatureType fetchType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 177 end line: 214 size: 38 LOC McCabe index: 17 number of parameters: 1 id: 414 unit: private List readNodes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeManager.java start line: 142 end line: 181 size: 38 LOC McCabe index: 8 number of parameters: 1 id: 415 unit: public Reference updateReferenceAnnotationFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 406 end line: 445 size: 38 LOC McCabe index: 3 number of parameters: 3 id: 416 unit: static getFeatureName() file: client/client/dataServices/gene/gene-feature-analyzer.js start line: 10 end line: 47 size: 38 LOC McCabe index: 12 number of parameters: 2 id: 417 unit: async searchGenes() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 192 end line: 229 size: 38 LOC McCabe index: 10 number of parameters: 1 id: 418 unit: applyAnnotationTracksState() file: client/client/app/shared/projectContext/index.js start line: 583 end line: 620 size: 38 LOC McCabe index: 14 number of parameters: 0 id: 419 unit: wasGeneChanged() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 676 end line: 713 size: 38 LOC McCabe index: 10 number of parameters: 1 id: 420 unit: async getNavigationToChromosomeInfo() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.service.js start line: 213 end line: 253 size: 38 LOC McCabe index: 12 number of parameters: 1 id: 421 unit: constructor() file: client/client/app/components/ngbStrainLineage/ngbCytoscape/ngbCytoscape.controller.js start line: 31 end line: 70 size: 38 LOC McCabe index: 6 number of parameters: 7 id: 422 unit: getTransformType() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 108 end line: 145 size: 38 LOC McCabe index: 22 number of parameters: 3 id: 423 unit: constructor() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 30 end line: 69 size: 38 LOC McCabe index: 1 number of parameters: 3 id: 424 unit: render() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 448 end line: 485 size: 38 LOC McCabe index: 25 number of parameters: 0 id: 425 unit: addColorConfiguration() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 443 end line: 480 size: 38 LOC McCabe index: 8 number of parameters: 0 id: 426 unit: function buildFilter() file: export-templates/target-identification/src/model/filtered-data.ts start line: 87 end line: 124 size: 38 LOC McCabe index: 6 number of parameters: 2 id: 427 unit: def main() file: server/catgenome/src/main/resources/scripts/run_tmap.py start line: 0 end line: 0 size: 37 LOC McCabe index: 3 number of parameters: 0 id: 428 unit: private void readHeader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixFeatureReader.java start line: 95 end line: 132 size: 37 LOC McCabe index: 7 number of parameters: 0 id: 429 unit: private void convertCurrentResultIntoObject() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 553 end line: 608 size: 37 LOC McCabe index: 5 number of parameters: 2 id: 430 unit: public MafRecord() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 85 end line: 121 size: 37 LOC McCabe index: 1 number of parameters: 1 id: 431 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/entity/nucleotid/NibByteFormat.java start line: 80 end line: 119 size: 37 LOC McCabe index: 2 number of parameters: 0 id: 432 unit: public void add() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/BigVcfFeatureIndexBuilder.java start line: 120 end line: 160 size: 37 LOC McCabe index: 8 number of parameters: 2 id: 433 unit: private String generateSessionFilter() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 137 end line: 180 size: 37 LOC McCabe index: 9 number of parameters: 1 id: 434 unit: private void processHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/UpdateItemPathManager.java start line: 150 end line: 186 size: 37 LOC McCabe index: 6 number of parameters: 5 id: 435 unit: public List readGenesFromGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 146 end line: 192 size: 37 LOC McCabe index: 6 number of parameters: 4 id: 436 unit: private List processAssembly() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 244 end line: 283 size: 37 LOC McCabe index: 7 number of parameters: 3 id: 437 unit: protected abstract void mapFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 414 end line: 486 size: 37 LOC McCabe index: 6 number of parameters: 5 id: 438 unit: public VcfFile registerVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 195 end line: 231 size: 37 LOC McCabe index: 8 number of parameters: 1 id: 439 unit: public AbstractFeatureReader makeGeneReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1235 end line: 1277 size: 37 LOC McCabe index: 6 number of parameters: 2 id: 440 unit: loadGeneTranscriptTrack() file: client/client/dataServices/gene/gene-data-service.js start line: 60 end line: 101 size: 37 LOC McCabe index: 5 number of parameters: 1 id: 441 unit: getUsersColumns() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 193 end line: 229 size: 37 LOC McCabe index: 1 number of parameters: 0 id: 442 unit: INIT() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.controller.js start line: 59 end line: 95 size: 37 LOC McCabe index: 10 number of parameters: 0 id: 443 unit: getReadSequence() file: client/client/app/shared/bisulfiteModeContext/index.js start line: 81 end line: 117 size: 37 LOC McCabe index: 11 number of parameters: 5 id: 444 unit: async loadTracks() file: client/client/app/shared/services/api.service.js start line: 249 end line: 292 size: 37 LOC McCabe index: 13 number of parameters: 2 id: 445 unit: async _loadDatasetTracks() file: client/client/app/shared/services/api.service.js start line: 485 end line: 521 size: 37 LOC McCabe index: 11 number of parameters: 1 id: 446 unit: function sortDatasets() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 30 end line: 76 size: 37 LOC McCabe index: 3 number of parameters: 1 id: 447 unit: apply() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 170 end line: 206 size: 37 LOC McCabe index: 11 number of parameters: 0 id: 448 unit: async onSearch() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSummary/ngbPatentsSummary.controller.js start line: 50 end line: 86 size: 37 LOC McCabe index: 4 number of parameters: 0 id: 449 unit: async setTargetModel() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 300 end line: 336 size: 37 LOC McCabe index: 5 number of parameters: 1 id: 450 unit: constructor() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 51 end line: 93 size: 37 LOC McCabe index: 1 number of parameters: 8 id: 451 unit: constructor() file: client/client/app/components/ngbMolecularViewer/ngbMiew/ngbMiew.controller.js start line: 9 end line: 45 size: 37 LOC McCabe index: 4 number of parameters: 6 id: 452 unit: set heatmapId() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 204 end line: 240 size: 37 LOC McCabe index: 11 number of parameters: 1 id: 453 unit: attribute: Boolean() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 50 end line: 95 size: 37 LOC McCabe index: 3 number of parameters: 1 id: 454 unit: export default function routes() file: client/client/app/app.routes.js start line: 3 end line: 41 size: 37 LOC McCabe index: 1 number of parameters: 3 id: 455 unit: onDrag() file: client/client/modules/render/core/track/scrollableTrack/scrollableTrack.js start line: 32 end line: 68 size: 37 LOC McCabe index: 12 number of parameters: 5 id: 456 unit: async updateCache() file: client/client/modules/render/tracks/bam/index.js start line: 469 end line: 505 size: 37 LOC McCabe index: 11 number of parameters: 0 id: 457 unit: render() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 92 end line: 128 size: 37 LOC McCabe index: 9 number of parameters: 3 id: 458 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/blast/BlastDatabasesListHandler.java start line: 83 end line: 118 size: 36 LOC McCabe index: 8 number of parameters: 0 id: 459 unit: public GeneHighLevel updateGeneFeatureByUid() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 592 end line: 632 size: 36 LOC McCabe index: 3 number of parameters: 4 id: 460 unit: private GeneFeature processFileContents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 207 end line: 257 size: 36 LOC McCabe index: 4 number of parameters: 7 id: 461 unit: private Gene getPreviousGeneFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 763 end line: 807 size: 36 LOC McCabe index: 8 number of parameters: 4 id: 462 unit: private void loadExonsBackwards() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 1100 end line: 1145 size: 36 LOC McCabe index: 8 number of parameters: 7 id: 463 unit: private static Map getGenotypeData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 196 end line: 231 size: 36 LOC McCabe index: 9 number of parameters: 1 id: 464 unit: public List fillSequenceOfGCFromNibFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 206 end line: 249 size: 36 LOC McCabe index: 5 number of parameters: 5 id: 465 unit: async function findFeature() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/parse-coordinates.js start line: 64 end line: 99 size: 36 LOC McCabe index: 16 number of parameters: 4 id: 466 unit: refreshPlainList() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 368 end line: 403 size: 36 LOC McCabe index: 3 number of parameters: 0 id: 467 unit: getOpenReferencePayload() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 291 end line: 327 size: 36 LOC McCabe index: 9 number of parameters: 1 id: 468 unit: navigateToCoordinates() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 389 end line: 426 size: 36 LOC McCabe index: 12 number of parameters: 1 id: 469 unit: getOpenReferencePayload() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 182 end line: 218 size: 36 LOC McCabe index: 9 number of parameters: 1 id: 470 unit: navigateToCoordinates() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 276 end line: 313 size: 36 LOC McCabe index: 12 number of parameters: 2 id: 471 unit: setParasiteTargetGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 382 end line: 417 size: 36 LOC McCabe index: 5 number of parameters: 1 id: 472 unit: initialize() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 249 end line: 284 size: 36 LOC McCabe index: 7 number of parameters: 0 id: 473 unit: getTooltipDataObject() file: client/client/modules/render/tracks/bed/index.js start line: 104 end line: 140 size: 36 LOC McCabe index: 14 number of parameters: 2 id: 474 unit: export function transformReference() file: client/client/modules/render/tracks/bam/internal/transformers/bamReferenceTransformer.js start line: 7 end line: 45 size: 36 LOC McCabe index: 9 number of parameters: 2 id: 475 unit: manageLabels() file: client/client/modules/render/tracks/gene/internal/renderer/features/featureRenderer.js start line: 224 end line: 260 size: 36 LOC McCabe index: 13 number of parameters: 3 id: 476 unit: async updateCache() file: client/client/modules/render/tracks/gene/index.js start line: 405 end line: 441 size: 36 LOC McCabe index: 9 number of parameters: 1 id: 477 unit: combineBubbles() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 225 end line: 260 size: 36 LOC McCabe index: 7 number of parameters: 2 id: 478 unit: value: Number() file: client/client/modules/render/tracks/featureCounts/internal/data/featureCountsTransformer.js start line: 98 end line: 134 size: 36 LOC McCabe index: 5 number of parameters: 1 id: 479 unit: navigateToCoordinates() file: client/client/modules/render/heatmap/navigation/index.js start line: 275 end line: 312 size: 36 LOC McCabe index: 12 number of parameters: 1 id: 480 unit: updateDisplayOptions() file: client/client/modules/render/heatmap/heatmap-view.js start line: 399 end line: 447 size: 36 LOC McCabe index: 11 number of parameters: 2 id: 481 unit: _renderReferenceLabel() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 488 end line: 528 size: 36 LOC McCabe index: 2 number of parameters: 2 id: 482 unit: _renderAltLabel() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 530 end line: 570 size: 36 LOC McCabe index: 2 number of parameters: 2 id: 483 unit: _addRadioButton() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 698 end line: 738 size: 36 LOC McCabe index: 5 number of parameters: 4 id: 484 unit: static Reference mapReferenceRow() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 587 end line: 625 size: 35 LOC McCabe index: 4 number of parameters: 1 id: 485 unit: private List loadStatisticRecords() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 545 end line: 585 size: 35 LOC McCabe index: 7 number of parameters: 2 id: 486 unit: public Track createHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/manager/TrackHelper.java start line: 267 end line: 310 size: 35 LOC McCabe index: 4 number of parameters: 4 id: 487 unit: public boolean processLine() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsLineProcessor.java start line: 65 end line: 107 size: 35 LOC McCabe index: 7 number of parameters: 1 id: 488 unit: public NggbIntervalTreeMap loadGenesIntervalMap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 455 end line: 494 size: 35 LOC McCabe index: 5 number of parameters: 4 id: 489 unit: private List buildHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 641 end line: 686 size: 35 LOC McCabe index: 5 number of parameters: 2 id: 490 unit: private List readEdges() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeManager.java start line: 198 end line: 232 size: 35 LOC McCabe index: 3 number of parameters: 2 id: 491 unit: public SearchResult searchHomologenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 118 end line: 156 size: 35 LOC McCabe index: 7 number of parameters: 1 id: 492 unit: public BlastFeatureLocatable fetchCoordinates() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastUtilManager.java start line: 69 end line: 103 size: 35 LOC McCabe index: 2 number of parameters: 3 id: 493 unit: save() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 166 end line: 201 size: 35 LOC McCabe index: 11 number of parameters: 0 id: 494 unit: addGLItemByPosition() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 647 end line: 694 size: 35 LOC McCabe index: 12 number of parameters: 1 id: 495 unit: async _parseCoordinates() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 376 end line: 411 size: 35 LOC McCabe index: 10 number of parameters: 0 id: 496 unit: setTargetsResults() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 138 end line: 172 size: 35 LOC McCabe index: 1 number of parameters: 1 id: 497 unit: getPatentsByProteinName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 356 end line: 390 size: 35 LOC McCabe index: 2 number of parameters: 0 id: 498 unit: async setPermissionsGridData() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 231 end line: 267 size: 35 LOC McCabe index: 12 number of parameters: 1 id: 499 unit: setGetTargetsRequest() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 106 end line: 140 size: 35 LOC McCabe index: 10 number of parameters: 0 id: 500 unit: async sortChangeConfirmed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 643 end line: 677 size: 35 LOC McCabe index: 6 number of parameters: 2 id: 501 unit: download() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableDownload/ngbGenesTableDownloadDlg.controller.js start line: 31 end line: 68 size: 35 LOC McCabe index: 3 number of parameters: 1 id: 502 unit: download() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableDownload/ngbVariantsTableDownloadDlg.controller.js start line: 30 end line: 67 size: 35 LOC McCabe index: 3 number of parameters: 1 id: 503 unit: async sortChanged() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 238 end line: 272 size: 35 LOC McCabe index: 6 number of parameters: 2 id: 504 unit: displayTooltip() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastWholeGenomeView/ngbBlastWholeGenomeView.controller.js start line: 86 end line: 123 size: 35 LOC McCabe index: 6 number of parameters: 2 id: 505 unit: splitAlignment() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.controller.js start line: 99 end line: 133 size: 35 LOC McCabe index: 5 number of parameters: 1 id: 506 unit: async navigateToGene() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbInternalPathwayNode.controller.js start line: 94 end line: 128 size: 35 LOC McCabe index: 12 number of parameters: 0 id: 507 unit: function deepSearch() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 59 end line: 93 size: 35 LOC McCabe index: 13 number of parameters: 4 id: 508 unit: loadSequence() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoMain/ngbFeatureInfoMain.controller.js start line: 32 end line: 66 size: 35 LOC McCabe index: 6 number of parameters: 0 id: 509 unit: _refreshPixiRenderer() file: client/client/modules/render/core/track/track.js start line: 253 end line: 291 size: 35 LOC McCabe index: 11 number of parameters: 1 id: 510 unit: export default function coverageColorPerform() file: client/client/modules/render/tracks/wig/menu/coverageColorPerform.js start line: 26 end line: 60 size: 35 LOC McCabe index: 6 number of parameters: 2 id: 511 unit: _renderBase() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 410 end line: 444 size: 35 LOC McCabe index: 11 number of parameters: 1 id: 512 unit: static checkAlignment() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderProcessor.js start line: 180 end line: 216 size: 35 LOC McCabe index: 10 number of parameters: 3 id: 513 unit: constructor() file: client/client/modules/render/tracks/bam/internal/transformers/layoutReads.js start line: 14 end line: 48 size: 35 LOC McCabe index: 8 number of parameters: 1 id: 514 unit: function afterStateMutatorFn() file: client/client/modules/render/tracks/common/scaleModes/menuHelpers.js start line: 80 end line: 114 size: 35 LOC McCabe index: 10 number of parameters: 3 id: 515 unit: drawBubble() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/statisticsContainer.js start line: 56 end line: 90 size: 35 LOC McCabe index: 4 number of parameters: 2 id: 516 unit: static _getEmptyZones() file: client/client/modules/render/utilities/zonesManager.js start line: 288 end line: 338 size: 35 LOC McCabe index: 9 number of parameters: 4 id: 517 unit: static _getZonePlacement() file: client/client/modules/render/utilities/zonesManager.js start line: 340 end line: 384 size: 35 LOC McCabe index: 9 number of parameters: 5 id: 518 unit: rebuild() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 198 end line: 239 size: 35 LOC McCabe index: 9 number of parameters: 0 id: 519 unit: constructor() file: client/client/modules/render/heatmap/renderer/viewport-renderer/index.js start line: 16 end line: 61 size: 35 LOC McCabe index: 6 number of parameters: 4 id: 520 unit: append() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/collapsed-tree.js start line: 54 end line: 88 size: 35 LOC McCabe index: 12 number of parameters: 1 id: 521 unit: getFullRebuildOptions() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/webgl-graphics.js start line: 55 end line: 89 size: 35 LOC McCabe index: 8 number of parameters: 1 id: 522 unit: constructor() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 127 end line: 193 size: 35 LOC McCabe index: 12 number of parameters: 1 id: 523 unit: fetch() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 213 end line: 248 size: 35 LOC McCabe index: 5 number of parameters: 0 id: 524 unit: ensureViewportRenderer() file: client/client/modules/render/heatmap/heatmap-view.js start line: 274 end line: 312 size: 35 LOC McCabe index: 14 number of parameters: 0 id: 525 unit: function FixedPosition() file: export-templates/target-identification/src/common/select/index.tsx start line: 425 end line: 459 size: 35 LOC McCabe index: 6 number of parameters: 1 id: 526 unit: public AzureBlobClient azureBlobClient() file: server/catgenome/src/main/java/com/epam/catgenome/app/Application.java start line: 88 end line: 124 size: 34 LOC McCabe index: 6 number of parameters: 1 id: 527 unit: Map lookupObjectIdentities() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 310 end line: 365 size: 34 LOC McCabe index: 4 number of parameters: 2 id: 528 unit: private int collectPermissions() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 294 end line: 332 size: 34 LOC McCabe index: 12 number of parameters: 5 id: 529 unit: public static Alignment fromEntry() file: server/catgenome/src/main/java/com/epam/catgenome/entity/blast/result/Alignment.java start line: 67 end line: 100 size: 34 LOC McCabe index: 1 number of parameters: 1 id: 530 unit: public E buildEntry() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/AbstractDocumentBuilder.java start line: 141 end line: 178 size: 34 LOC McCabe index: 5 number of parameters: 1 id: 531 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 294 end line: 329 size: 34 LOC McCabe index: 11 number of parameters: 1 id: 532 unit: private static void parseSymbolicVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 611 end line: 644 size: 34 LOC McCabe index: 11 number of parameters: 2 id: 533 unit: public void makeIndexForVcfReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 621 end line: 659 size: 34 LOC McCabe index: 7 number of parameters: 5 id: 534 unit: public void importData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneInfoManager.java start line: 93 end line: 126 size: 34 LOC McCabe index: 5 number of parameters: 1 id: 535 unit: private Query buildPathwaySearchQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 480 end line: 518 size: 34 LOC McCabe index: 7 number of parameters: 1 id: 536 unit: private List getRequestIntervals() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 547 end line: 583 size: 34 LOC McCabe index: 4 number of parameters: 3 id: 537 unit: private List fetchGenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 617 end line: 653 size: 34 LOC McCabe index: 5 number of parameters: 2 id: 538 unit: loadGeneTrackCacheArgs() file: client/client/dataServices/gene/cached-gene-data-service.js start line: 7 end line: 40 size: 34 LOC McCabe index: 3 number of parameters: 2 id: 539 unit: getReferenceParts() file: client/client/app/shared/bisulfiteModeContext/index.js start line: 188 end line: 221 size: 34 LOC McCabe index: 9 number of parameters: 2 id: 540 unit: async _initializeVariants() file: client/client/app/shared/projectContext/index.js start line: 1950 end line: 1983 size: 34 LOC McCabe index: 7 number of parameters: 1 id: 541 unit: getRequest() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 149 end line: 182 size: 34 LOC McCabe index: 9 number of parameters: 0 id: 542 unit: getPages() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTablePagination/ngbDiseasesDrugsTablePagination.controller.js start line: 43 end line: 78 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 543 unit: getPages() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbTargetsTablePagination/ngbTargetsTablePagination.controller.js start line: 44 end line: 79 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 544 unit: getPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPagination/ngbBibliographyPagination.controller.js start line: 52 end line: 87 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 545 unit: function buildTree() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesGraph/make.graph.js start line: 73 end line: 106 size: 34 LOC McCabe index: 4 number of parameters: 2 id: 546 unit: getPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTablePagination/ngbDiseasesTablePagination.controller.js start line: 45 end line: 80 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 547 unit: getPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTablePagination/ngbStructureTablePagination.controller.js start line: 45 end line: 80 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 548 unit: getPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTablePagination/ngbGenomicsTablePagination.controller.js start line: 45 end line: 80 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 549 unit: getPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTablePagination/ngbSequencesTablePagination.controller.js start line: 45 end line: 80 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 550 unit: getPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbChemicalTablePagination/ngbChemicalTablePagination.controller.js start line: 45 end line: 80 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 551 unit: getPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbProteinTablePagination/ngbProteinTablePagination.controller.js start line: 45 end line: 80 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 552 unit: getPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTablePagination/ngbDrugsTablePagination.controller.js start line: 45 end line: 80 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 553 unit: getPages() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTablePaginate/ngbTargetsTablePaginate.controller.js start line: 45 end line: 80 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 554 unit: sortColumns() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 258 end line: 291 size: 34 LOC McCabe index: 24 number of parameters: 0 id: 555 unit: getPages() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbGenesTablePagination/ngbGenesTablePagination.controller.js start line: 42 end line: 77 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 556 unit: getPages() file: client/client/app/components/ngbHomologsPanel/ngbHomologsPanelPaginate/ngbHomologsPanelPaginate.controller.js start line: 31 end line: 66 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 557 unit: getPages() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTablePaginate/ngbBookmarksTablePaginate.controller.js start line: 50 end line: 85 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 558 unit: test() file: client/client/app/components/ngbDataSets/internal/ngbDataSets.node.js start line: 11 end line: 44 size: 34 LOC McCabe index: 10 number of parameters: 3 id: 559 unit: getPages() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTablePaginate/ngbVariantsTablePaginate.controller.js start line: 57 end line: 92 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 560 unit: getBlastSearchResultGridColumns() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.service.js start line: 38 end line: 72 size: 34 LOC McCabe index: 4 number of parameters: 0 id: 561 unit: getPages() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanelPaginate/ngbBlastSearchPanelPaginate.controller.js start line: 31 end line: 66 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 562 unit: constructor() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastWholeGenomeView/ngbBlastWholeGenomeView.controller.js start line: 22 end line: 57 size: 34 LOC McCabe index: 3 number of parameters: 4 id: 563 unit: link() file: client/client/app/components/ngbTracksView/ngbTrack/ngbResizePanel.directive.js start line: 3 end line: 45 size: 34 LOC McCabe index: 5 number of parameters: 2 id: 564 unit: getPages() file: client/client/app/components/ngbPathways/ngbPathwaysPanelPaginate/ngbPathwaysPanelPaginate.controller.js start line: 31 end line: 66 size: 34 LOC McCabe index: 8 number of parameters: 0 id: 565 unit: _getTooltipContent() file: client/client/modules/render/tracks/bam/index.js start line: 559 end line: 592 size: 34 LOC McCabe index: 11 number of parameters: 1 id: 566 unit: transformData() file: client/client/modules/render/tracks/motifs/index.js start line: 146 end line: 179 size: 34 LOC McCabe index: 4 number of parameters: 1 id: 567 unit: constructor() file: client/client/modules/render/heatmap/renderer/heatmap-options-renderer/index.js start line: 12 end line: 49 size: 34 LOC McCabe index: 2 number of parameters: 3 id: 568 unit: export default function splitTree() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/utilities/split-tree.js start line: 25 end line: 64 size: 34 LOC McCabe index: 5 number of parameters: 2 id: 569 unit: updateVisibility() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/axis-label.js start line: 475 end line: 508 size: 34 LOC McCabe index: 10 number of parameters: 3 id: 570 unit: initialize() file: client/client/modules/render/heatmap/renderer/color-scheme-renderer/index.js start line: 97 end line: 130 size: 34 LOC McCabe index: 6 number of parameters: 0 id: 571 unit: function parseMetadataItem() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 48 end line: 81 size: 34 LOC McCabe index: 10 number of parameters: 2 id: 572 unit: fetchMetadata() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 120 end line: 154 size: 34 LOC McCabe index: 3 number of parameters: 0 id: 573 unit: export default function makeInitializable() file: client/client/modules/render/heatmap/utilities/make-initializable.js start line: 34 end line: 78 size: 34 LOC McCabe index: 3 number of parameters: 2 id: 574 unit: private static BiologicalDataItem mapRow() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 355 end line: 393 size: 33 LOC McCabe index: 6 number of parameters: 2 id: 575 unit: private IndexSearchResult searchLuceneIndexForProject() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 394 end line: 431 size: 33 LOC McCabe index: 6 number of parameters: 5 id: 576 unit: public List groupVariations() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 781 end line: 820 size: 33 LOC McCabe index: 5 number of parameters: 3 id: 577 unit: public static Query intervalQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/IndexQueryUtils.java start line: 44 end line: 86 size: 33 LOC McCabe index: 2 number of parameters: 4 id: 578 unit: private void mergeMaf() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafManager.java start line: 246 end line: 278 size: 33 LOC McCabe index: 7 number of parameters: 2 id: 579 unit: private Throwable readPartOfGeneIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 333 end line: 373 size: 33 LOC McCabe index: 3 number of parameters: 7 id: 580 unit: public Set fetchGeneIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneTrackManager.java start line: 218 end line: 256 size: 33 LOC McCabe index: 3 number of parameters: 4 id: 581 unit: private void createFileIndices() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 171 end line: 205 size: 33 LOC McCabe index: 7 number of parameters: 4 id: 582 unit: private GeneFile registerGeneFileFromUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 354 end line: 392 size: 33 LOC McCabe index: 7 number of parameters: 1 id: 583 unit: private VcfFile createVcfFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 616 end line: 650 size: 33 LOC McCabe index: 7 number of parameters: 4 id: 584 unit: private List parseStructures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbEntriesManager.java start line: 122 end line: 154 size: 33 LOC McCabe index: 6 number of parameters: 1 id: 585 unit: private void parse() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandReader.java start line: 170 end line: 211 size: 33 LOC McCabe index: 6 number of parameters: 1 id: 586 unit: function _calculateCondition() file: client/client/dataServices/utils/highlight-condition-service.js start line: 148 end line: 180 size: 33 LOC McCabe index: 10 number of parameters: 2 id: 587 unit: async sortChanged() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 217 end line: 249 size: 33 LOC McCabe index: 6 number of parameters: 2 id: 588 unit: async sortChanged() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 241 end line: 273 size: 33 LOC McCabe index: 6 number of parameters: 2 id: 589 unit: async sortChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 278 end line: 310 size: 33 LOC McCabe index: 6 number of parameters: 2 id: 590 unit: async sortChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 266 end line: 298 size: 33 LOC McCabe index: 6 number of parameters: 2 id: 591 unit: splitAlignment() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsAlignment/ngbGenomicsAlignment.controller.js start line: 54 end line: 86 size: 33 LOC McCabe index: 5 number of parameters: 1 id: 592 unit: async sortChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 171 end line: 203 size: 33 LOC McCabe index: 6 number of parameters: 2 id: 593 unit: async sortChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 187 end line: 219 size: 33 LOC McCabe index: 6 number of parameters: 2 id: 594 unit: async sortChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 244 end line: 276 size: 33 LOC McCabe index: 6 number of parameters: 2 id: 595 unit: setTargetsResult() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 142 end line: 174 size: 33 LOC McCabe index: 4 number of parameters: 1 id: 596 unit: apply() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 166 end line: 198 size: 33 LOC McCabe index: 7 number of parameters: 0 id: 597 unit: rowClick() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.controller.js start line: 139 end line: 174 size: 33 LOC McCabe index: 5 number of parameters: 1 id: 598 unit: async initialize() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.controller.js start line: 56 end line: 88 size: 33 LOC McCabe index: 9 number of parameters: 0 id: 599 unit: constructor() file: client/client/modules/render/core/track/track.js start line: 171 end line: 203 size: 33 LOC McCabe index: 5 number of parameters: 1 id: 600 unit: function fillTriangle() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/strandDrawing.js start line: 75 end line: 107 size: 33 LOC McCabe index: 2 number of parameters: 7 id: 601 unit: _testVariant() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/vcfRenderer.js start line: 142 end line: 175 size: 33 LOC McCabe index: 11 number of parameters: 1 id: 602 unit: onHover() file: client/client/modules/render/tracks/vcf/index.js start line: 372 end line: 404 size: 33 LOC McCabe index: 9 number of parameters: 2 id: 603 unit: onClick() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 639 end line: 671 size: 33 LOC McCabe index: 17 number of parameters: 1 id: 604 unit: async updateCache() file: client/client/modules/render/tracks/reference/index.js start line: 73 end line: 105 size: 33 LOC McCabe index: 8 number of parameters: 0 id: 605 unit: initialize() file: client/client/modules/render/heatmap/heatmap-view.js start line: 229 end line: 261 size: 33 LOC McCabe index: 9 number of parameters: 1 id: 606 unit: public List registerItems() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/FileRegistrationHandler.java start line: 177 end line: 210 size: 32 LOC McCabe index: 5 number of parameters: 0 id: 607 unit: public Sort createVcfSorting() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 669 end line: 707 size: 32 LOC McCabe index: 5 number of parameters: 2 id: 608 unit: public Document copyGeneDocument() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/GeneDocumentBuilder.java start line: 132 end line: 171 size: 32 LOC McCabe index: 1 number of parameters: 5 id: 609 unit: private void parseInfo() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 659 end line: 692 size: 32 LOC McCabe index: 10 number of parameters: 4 id: 610 unit: private List mapPatents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/GooglePatentManager.java start line: 149 end line: 180 size: 32 LOC McCabe index: 1 number of parameters: 1 id: 611 unit: private static void addDoc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 379 end line: 416 size: 32 LOC McCabe index: 4 number of parameters: 4 id: 612 unit: public void makeIndexMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 803 end line: 838 size: 32 LOC McCabe index: 6 number of parameters: 2 id: 613 unit: private DataOutputStream makeHistogramOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1070 end line: 1105 size: 32 LOC McCabe index: 6 number of parameters: 2 id: 614 unit: public LinkedHashMap process() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/NGBGenbankReader.java start line: 121 end line: 157 size: 32 LOC McCabe index: 8 number of parameters: 1 id: 615 unit: private List getGCData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 478 end line: 512 size: 32 LOC McCabe index: 5 number of parameters: 7 id: 616 unit: function _parseCondition() file: client/client/dataServices/utils/highlight-condition-service.js start line: 91 end line: 125 size: 32 LOC McCabe index: 9 number of parameters: 1 id: 617 unit: static buildAlternativeAlleleDisplayText() file: client/client/dataServices/vcf/vcf-analyzer.js start line: 184 end line: 215 size: 32 LOC McCabe index: 13 number of parameters: 2 id: 618 unit: constructor() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayoutObj.service.js start line: 10 end line: 46 size: 32 LOC McCabe index: 1 number of parameters: 3 id: 619 unit: didSelectSearchItem() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 285 end line: 316 size: 32 LOC McCabe index: 7 number of parameters: 1 id: 620 unit: getPages() file: client/client/app/shared/components/ngbPagination/ngbPagination.controller.js start line: 32 end line: 64 size: 32 LOC McCabe index: 8 number of parameters: 0 id: 621 unit: function analyzeGeneStructure() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 1100 end line: 1131 size: 32 LOC McCabe index: 13 number of parameters: 2 id: 622 unit: async refreshReferences() file: client/client/app/shared/projectContext/index.js start line: 1110 end line: 1141 size: 32 LOC McCabe index: 8 number of parameters: 1 id: 623 unit: getTableResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 364 end line: 395 size: 32 LOC McCabe index: 2 number of parameters: 0 id: 624 unit: getUpdateRequest() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 618 end line: 649 size: 32 LOC McCabe index: 7 number of parameters: 0 id: 625 unit: searchFinished() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbBookmarksFilterList.controller.js start line: 63 end line: 94 size: 32 LOC McCabe index: 9 number of parameters: 2 id: 626 unit: async setPermissionsGridData() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 98 end line: 131 size: 32 LOC McCabe index: 12 number of parameters: 1 id: 627 unit: sortChanged() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 316 end line: 348 size: 32 LOC McCabe index: 7 number of parameters: 2 id: 628 unit: searchBamCoverage() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 124 end line: 155 size: 32 LOC McCabe index: 4 number of parameters: 1 id: 629 unit: _downloadView() file: client/client/app/components/ngbTracksView/managers/ngbTracksView.camera.manager.js start line: 50 end line: 84 size: 32 LOC McCabe index: 8 number of parameters: 1 id: 630 unit: onTracksSelectionChanged() file: client/client/app/components/ngbTracksView/ngbTracksSelectionMenu/ngbTracksSelectionMenu.controller.js start line: 27 end line: 58 size: 32 LOC McCabe index: 5 number of parameters: 0 id: 631 unit: async loadInternalPathways() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 116 end line: 148 size: 32 LOC McCabe index: 10 number of parameters: 1 id: 632 unit: getGeneInfoHistory() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 187 end line: 220 size: 32 LOC McCabe index: 2 number of parameters: 2 id: 633 unit: _refreshCache() file: client/client/modules/render/core/track/track.js start line: 355 end line: 386 size: 32 LOC McCabe index: 8 number of parameters: 0 id: 634 unit: _initRead() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 201 end line: 232 size: 32 LOC McCabe index: 10 number of parameters: 1 id: 635 unit: _renderMatch() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 285 end line: 316 size: 32 LOC McCabe index: 10 number of parameters: 1 id: 636 unit: async fetchAvailableFeatureTypes() file: client/client/modules/render/tracks/gene/index.js start line: 120 end line: 154 size: 32 LOC McCabe index: 9 number of parameters: 0 id: 637 unit: buildBubble() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/statisticsContainer.js start line: 23 end line: 54 size: 32 LOC McCabe index: 3 number of parameters: 1 id: 638 unit: render() file: client/client/modules/render/tracks/vcf/index.js start line: 245 end line: 276 size: 32 LOC McCabe index: 12 number of parameters: 1 id: 639 unit: unregisterTrack() file: client/client/modules/render/utilities/groupAutoScaleManager.js start line: 160 end line: 191 size: 32 LOC McCabe index: 7 number of parameters: 1 id: 640 unit: constructor() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 20 end line: 67 size: 32 LOC McCabe index: 5 number of parameters: 3 id: 641 unit: render() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/axis-label.js start line: 514 end line: 545 size: 32 LOC McCabe index: 16 number of parameters: 0 id: 642 unit: initialize() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 158 end line: 189 size: 32 LOC McCabe index: 7 number of parameters: 1 id: 643 unit: _renderAlternativeAlleleUsingDefaultMode() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 212 end line: 246 size: 32 LOC McCabe index: 6 number of parameters: 1 id: 644 unit: function defaultSorter() file: export-templates/target-identification/src/model/sorted-data.ts start line: 7 end line: 38 size: 32 LOC McCabe index: 11 number of parameters: 2 id: 645 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/CreateUserGroupHandler.java start line: 79 end line: 113 size: 31 LOC McCabe index: 7 number of parameters: 2 id: 646 unit: private MafFile registerMafFileFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafManager.java start line: 143 end line: 174 size: 31 LOC McCabe index: 6 number of parameters: 1 id: 647 unit: public List parse() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/PSLRecordParser.java start line: 62 end line: 96 size: 31 LOC McCabe index: 10 number of parameters: 1 id: 648 unit: private void reconstructProteinSequenceVariants() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceManager.java start line: 363 end line: 397 size: 31 LOC McCabe index: 4 number of parameters: 7 id: 649 unit: private int processFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 306 end line: 345 size: 31 LOC McCabe index: 6 number of parameters: 7 id: 650 unit: private void openStreams() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 509 end line: 542 size: 31 LOC McCabe index: 3 number of parameters: 2 id: 651 unit: public List loadExonsInViewPort() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 819 end line: 854 size: 31 LOC McCabe index: 3 number of parameters: 5 id: 652 unit: public String getSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/sequence/SequencesManager.java start line: 83 end line: 114 size: 31 LOC McCabe index: 3 number of parameters: 1 id: 653 unit: public List loadAllReferenceGenomes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 245 end line: 278 size: 31 LOC McCabe index: 7 number of parameters: 1 id: 654 unit: private OkHttpClient buildHttpClient() file: server/catgenome/src/main/java/com/epam/catgenome/client/cloud/pipeline/CloudPipelineApiBuilder.java start line: 65 end line: 98 size: 31 LOC McCabe index: 3 number of parameters: 0 id: 655 unit: private OkHttpClient buildHttpClient() file: server/catgenome/src/main/java/com/epam/catgenome/client/blast/BlastApiBuilder.java start line: 65 end line: 98 size: 31 LOC McCabe index: 3 number of parameters: 0 id: 656 unit: preprocessFiles() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 374 end line: 405 size: 31 LOC McCabe index: 9 number of parameters: 1 id: 657 unit: export default() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.directive.js start line: 4 end line: 45 size: 31 LOC McCabe index: 3 number of parameters: 3 id: 658 unit: displayTooltip() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.controller.js start line: 184 end line: 214 size: 31 LOC McCabe index: 6 number of parameters: 2 id: 659 unit: async analyze() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 101 end line: 132 size: 31 LOC McCabe index: 8 number of parameters: 2 id: 660 unit: async getAffectedGenes() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 380 end line: 410 size: 31 LOC McCabe index: 11 number of parameters: 4 id: 661 unit: buildData() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantQualityDiagram/ngbVariantQualityDiagram.controller.js start line: 76 end line: 106 size: 31 LOC McCabe index: 11 number of parameters: 1 id: 662 unit: export default function buildMainInfoBlocks() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/utilities/build-main-info-blocks.js start line: 1 end line: 31 size: 31 LOC McCabe index: 5 number of parameters: 1 id: 663 unit: async getSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 554 end line: 584 size: 31 LOC McCabe index: 3 number of parameters: 0 id: 664 unit: async getDataOnLastPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 543 end line: 573 size: 31 LOC McCabe index: 7 number of parameters: 0 id: 665 unit: sortChanged() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.controller.js start line: 168 end line: 199 size: 31 LOC McCabe index: 6 number of parameters: 2 id: 666 unit: sortChanged() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.controller.js start line: 164 end line: 195 size: 31 LOC McCabe index: 6 number of parameters: 2 id: 667 unit: onListChanged() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbBookmarksFilterList.controller.js start line: 31 end line: 61 size: 31 LOC McCabe index: 8 number of parameters: 1 id: 668 unit: async pdbChange() file: client/client/app/components/ngbMolecularViewer/ngbPdbDescription/ngbPdbDescription.controller.js start line: 23 end line: 57 size: 31 LOC McCabe index: 11 number of parameters: 1 id: 669 unit: sortChanged() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistory.controller.js start line: 187 end line: 218 size: 31 LOC McCabe index: 6 number of parameters: 2 id: 670 unit: getOpenReferencePayload() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.service.js start line: 90 end line: 121 size: 31 LOC McCabe index: 9 number of parameters: 2 id: 671 unit: sortChanged() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.controller.js start line: 176 end line: 207 size: 31 LOC McCabe index: 6 number of parameters: 2 id: 672 unit: apply() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysFilterList/ngbInternalPathwaysFilterList.controller.js start line: 130 end line: 160 size: 31 LOC McCabe index: 7 number of parameters: 0 id: 673 unit: getOpenReferencePayload() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 187 end line: 218 size: 31 LOC McCabe index: 9 number of parameters: 2 id: 674 unit: constructor() file: client/client/modules/render/tracks/gene/internal/renderer/features/featureRenderer.js start line: 31 end line: 62 size: 31 LOC McCabe index: 1 number of parameters: 2 id: 675 unit: export default function generateCoordinateSystemTicks() file: client/client/modules/render/utilities/coordinateSystem.js start line: 41 end line: 71 size: 31 LOC McCabe index: 9 number of parameters: 4 id: 676 unit: destroy() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 69 end line: 99 size: 31 LOC McCabe index: 7 number of parameters: 0 id: 677 unit: getOpenReferencePayload() file: client/client/modules/render/heatmap/navigation/index.js start line: 217 end line: 248 size: 31 LOC McCabe index: 9 number of parameters: 1 id: 678 unit: set type() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 281 end line: 311 size: 31 LOC McCabe index: 5 number of parameters: 1 id: 679 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/user/DeleteUserHandler.java start line: 64 end line: 96 size: 30 LOC McCabe index: 6 number of parameters: 2 id: 680 unit: public void add() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 98 end line: 130 size: 30 LOC McCabe index: 7 number of parameters: 2 id: 681 unit: protected Map filterInfoByWhiteList() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 132 end line: 163 size: 30 LOC McCabe index: 6 number of parameters: 3 id: 682 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3BaseData.java start line: 65 end line: 98 size: 30 LOC McCabe index: 20 number of parameters: 1 id: 683 unit: private Gff3FeatureImpl recordToGffFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsToGffConvertor.java start line: 90 end line: 123 size: 30 LOC McCabe index: 5 number of parameters: 2 id: 684 unit: private List readHistogramPortion() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 981 end line: 1018 size: 30 LOC McCabe index: 4 number of parameters: 5 id: 685 unit: private Variation createVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 239 end line: 274 size: 30 LOC McCabe index: 6 number of parameters: 4 id: 686 unit: private void determineOrganismType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 336 end line: 365 size: 30 LOC McCabe index: 8 number of parameters: 5 id: 687 unit: private List parseProteinPatents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/PatentsManager.java start line: 170 end line: 199 size: 30 LOC McCabe index: 4 number of parameters: 1 id: 688 unit: public List getNcbiGeneIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneIdsManager.java start line: 49 end line: 78 size: 30 LOC McCabe index: 7 number of parameters: 1 id: 689 unit: public List getGeneProteins() file: server/catgenome/src/main/java/com/epam/catgenome/manager/sequence/SequencesManager.java start line: 170 end line: 199 size: 30 LOC McCabe index: 6 number of parameters: 2 id: 690 unit: private Map parseMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileManager.java start line: 179 end line: 208 size: 30 LOC McCabe index: 6 number of parameters: 1 id: 691 unit: export function $http() file: client/client/dataServices/data-service.js start line: 191 end line: 222 size: 30 LOC McCabe index: 11 number of parameters: 4 id: 692 unit: loadHeatmapMetadata() file: client/client/dataServices/heatmap/heatmap-data-service.js start line: 68 end line: 99 size: 30 LOC McCabe index: 6 number of parameters: 2 id: 693 unit: constructor() file: client/client/app/shared/utils/events.js start line: 84 end line: 114 size: 30 LOC McCabe index: 2 number of parameters: 1 id: 694 unit: getGroupsManagementColumns() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.service.js start line: 270 end line: 299 size: 30 LOC McCabe index: 1 number of parameters: 0 id: 695 unit: getRolesManagementColumns() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.service.js start line: 301 end line: 331 size: 30 LOC McCabe index: 1 number of parameters: 0 id: 696 unit: async generateUrl() file: client/client/app/shared/components/ngbMainToolbar/ngbShareLinkMenu/ngbShareLinkMenu.controller.js start line: 54 end line: 86 size: 30 LOC McCabe index: 8 number of parameters: 0 id: 697 unit: repairSavedLayout() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.service.js start line: 27 end line: 70 size: 30 LOC McCabe index: 10 number of parameters: 1 id: 698 unit: panelAddBlastSearchPanel() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 576 end line: 609 size: 30 LOC McCabe index: 7 number of parameters: 1 id: 699 unit: _select() file: client/client/app/shared/services/api.service.js start line: 602 end line: 635 size: 30 LOC McCabe index: 5 number of parameters: 4 id: 700 unit: didClickOnItem() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbMotifsResultsFilterList.controller.js start line: 172 end line: 201 size: 30 LOC McCabe index: 7 number of parameters: 1 id: 701 unit: async loadOrthoPara() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.service.js start line: 80 end line: 109 size: 30 LOC McCabe index: 4 number of parameters: 1 id: 702 unit: async loadHomologene() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.service.js start line: 81 end line: 110 size: 30 LOC McCabe index: 4 number of parameters: 1 id: 703 unit: apply() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterRange/ngbGenesFilterRange.controller.js start line: 34 end line: 63 size: 30 LOC McCabe index: 11 number of parameters: 0 id: 704 unit: function prepareConfigVCF() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.service.js start line: 65 end line: 94 size: 30 LOC McCabe index: 4 number of parameters: 1 id: 705 unit: _onTouchMoved() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 58 end line: 89 size: 30 LOC McCabe index: 10 number of parameters: 1 id: 706 unit: async setReference() file: client/client/modules/render/tracks/bam/index.js start line: 658 end line: 687 size: 30 LOC McCabe index: 4 number of parameters: 1 id: 707 unit: constructor() file: client/client/modules/render/tracks/motifs/index.js start line: 40 end line: 72 size: 30 LOC McCabe index: 2 number of parameters: 1 id: 708 unit: analyzeBoundaries() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/featureBaseRenderer.js start line: 77 end line: 106 size: 30 LOC McCabe index: 4 number of parameters: 2 id: 709 unit: render() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/variantAltFeatureRenderer.js start line: 43 end line: 72 size: 30 LOC McCabe index: 5 number of parameters: 7 id: 710 unit: _drawVariants() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/vcfRenderer.js start line: 87 end line: 118 size: 30 LOC McCabe index: 5 number of parameters: 2 id: 711 unit: init() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 73 end line: 107 size: 30 LOC McCabe index: 2 number of parameters: 1 id: 712 unit: _changeReferenceGraph() file: client/client/modules/render/tracks/reference/referenceRenderer.js start line: 263 end line: 293 size: 30 LOC McCabe index: 11 number of parameters: 2 id: 713 unit: onHover() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 299 end line: 332 size: 30 LOC McCabe index: 7 number of parameters: 1 id: 714 unit: prepareGraphics() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 109 end line: 138 size: 30 LOC McCabe index: 7 number of parameters: 0 id: 715 unit: render() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 507 end line: 536 size: 30 LOC McCabe index: 8 number of parameters: 0 id: 716 unit: constructor() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 29 end line: 66 size: 30 LOC McCabe index: 1 number of parameters: 1 id: 717 unit: render() file: client/client/modules/render/heatmap/renderer/color-scheme-renderer/index.js start line: 319 end line: 348 size: 30 LOC McCabe index: 9 number of parameters: 1 id: 718 unit: destroyDisplayObjects() file: client/client/modules/render/heatmap/heatmap-view.js start line: 152 end line: 181 size: 30 LOC McCabe index: 8 number of parameters: 0 id: 719 unit: export default function Sequences() file: export-templates/target-identification/src/sections/structures/index.tsx start line: 15 end line: 44 size: 30 LOC McCabe index: 1 number of parameters: 0 id: 720 unit: export default function AssociatedDiseases() file: export-templates/target-identification/src/sections/associated-diseases/index.tsx start line: 12 end line: 41 size: 30 LOC McCabe index: 1 number of parameters: 0 id: 721 unit: function renderTableColumnFilter() file: export-templates/target-identification/src/common/table/index.tsx start line: 105 end line: 134 size: 30 LOC McCabe index: 1 number of parameters: 3 id: 722 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/dataset/DatasetItemAddingHandler.java start line: 83 end line: 117 size: 29 LOC McCabe index: 5 number of parameters: 2 id: 723 unit: public void run() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/AbstractFeatureSorter.java start line: 70 end line: 105 size: 29 LOC McCabe index: 7 number of parameters: 1 id: 724 unit: protected void readNextRecord() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixFeatureReader.java start line: 196 end line: 224 size: 29 LOC McCabe index: 8 number of parameters: 0 id: 725 unit: public boolean hasSpecificRole() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 85 end line: 113 size: 29 LOC McCabe index: 13 number of parameters: 1 id: 726 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 649 end line: 680 size: 29 LOC McCabe index: 3 number of parameters: 0 id: 727 unit: public IndexSearchResult getSearchResults() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/searcher/AbstractIndexSearcher.java start line: 75 end line: 106 size: 29 LOC McCabe index: 7 number of parameters: 3 id: 728 unit: public int getTotalVariationsCountFacet() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 634 end line: 667 size: 29 LOC McCabe index: 5 number of parameters: 2 id: 729 unit: public Sort createGeneSorting() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 709 end line: 740 size: 29 LOC McCabe index: 7 number of parameters: 2 id: 730 unit: static Heatmap parseHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 316 end line: 344 size: 29 LOC McCabe index: 2 number of parameters: 1 id: 731 unit: public ProjectDescription upsert() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectDescriptionService.java start line: 55 end line: 87 size: 29 LOC McCabe index: 6 number of parameters: 4 id: 732 unit: public Pair parseHistoryResponse() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 239 end line: 274 size: 29 LOC McCabe index: 5 number of parameters: 2 id: 733 unit: public SequencesSummary getSequencesCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/sequence/NCBISequenceManager.java start line: 104 end line: 133 size: 29 LOC McCabe index: 3 number of parameters: 1 id: 734 unit: public List getGeneProteins() file: server/catgenome/src/main/java/com/epam/catgenome/manager/sequence/SequencesManager.java start line: 139 end line: 168 size: 29 LOC McCabe index: 8 number of parameters: 2 id: 735 unit: protected Track getNucleotidesTrackFromNib() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 432 end line: 460 size: 29 LOC McCabe index: 3 number of parameters: 1 id: 736 unit: public StrandedSequence getNextMotif() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 154 end line: 185 size: 29 LOC McCabe index: 3 number of parameters: 1 id: 737 unit: loadGeneHistogramTrackCacheArgs() file: client/client/dataServices/gene/cached-gene-data-service.js start line: 42 end line: 70 size: 29 LOC McCabe index: 4 number of parameters: 1 id: 738 unit: _goToState() file: client/client/app/app.controller.js start line: 350 end line: 378 size: 29 LOC McCabe index: 8 number of parameters: 0 id: 739 unit: startScrollCheck() file: client/client/app/shared/components/ngbChat/ngbChat.controller.js start line: 34 end line: 62 size: 29 LOC McCabe index: 7 number of parameters: 0 id: 740 unit: getChromosome() file: client/client/app/shared/projectContext/index.js start line: 2109 end line: 2143 size: 29 LOC McCabe index: 10 number of parameters: 1 id: 741 unit: setTrackSettings() file: client/client/app/shared/services/api.service.js start line: 203 end line: 233 size: 29 LOC McCabe index: 6 number of parameters: 1 id: 742 unit: searchFinished() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbDiseasesTargetsFilterList.controller.js start line: 140 end line: 168 size: 29 LOC McCabe index: 8 number of parameters: 2 id: 743 unit: showInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 185 end line: 213 size: 29 LOC McCabe index: 6 number of parameters: 3 id: 744 unit: searchFinished() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 140 end line: 168 size: 29 LOC McCabe index: 8 number of parameters: 2 id: 745 unit: export function mapGooglePatentsData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/utilities/map-google-patents-data.js start line: 1 end line: 29 size: 29 LOC McCabe index: 5 number of parameters: 2 id: 746 unit: async updateTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 166 end line: 194 size: 29 LOC McCabe index: 8 number of parameters: 1 id: 747 unit: constructor() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 36 end line: 66 size: 29 LOC McCabe index: 4 number of parameters: 5 id: 748 unit: apply() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterRange/ngbCoverageFilterRange.controller.js start line: 35 end line: 63 size: 29 LOC McCabe index: 8 number of parameters: 0 id: 749 unit: constructor() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbCoverageFilterList.controller.js start line: 20 end line: 48 size: 29 LOC McCabe index: 4 number of parameters: 5 id: 750 unit: _formatServerToClient() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 362 end line: 390 size: 29 LOC McCabe index: 8 number of parameters: 1 id: 751 unit: render() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRenderer.js start line: 38 end line: 66 size: 29 LOC McCabe index: 13 number of parameters: 4 id: 752 unit: translatePosition() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 204 end line: 232 size: 29 LOC McCabe index: 7 number of parameters: 2 id: 753 unit: function attachTracks() file: client/client/modules/render/core/menu/index.js start line: 3 end line: 38 size: 29 LOC McCabe index: 8 number of parameters: 3 id: 754 unit: constructor() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 20 end line: 56 size: 29 LOC McCabe index: 1 number of parameters: 5 id: 755 unit: _checkSpliceJunction() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 568 end line: 596 size: 29 LOC McCabe index: 13 number of parameters: 2 id: 756 unit: _getBlockDrawingConfig() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/transcriptFeatureRenderer.js start line: 56 end line: 84 size: 29 LOC McCabe index: 8 number of parameters: 2 id: 757 unit: _renderAminoacid() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/transcriptFeatureRenderer.js start line: 259 end line: 287 size: 29 LOC McCabe index: 10 number of parameters: 1 id: 758 unit: onMove() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/index.js start line: 676 end line: 704 size: 29 LOC McCabe index: 4 number of parameters: 1 id: 759 unit: constructor() file: client/client/modules/render/tracks/featureCounts/internal/renderer/bar-chart/bar-chart-source-renderer.js start line: 9 end line: 37 size: 29 LOC McCabe index: 4 number of parameters: 3 id: 760 unit: onDrag() file: client/client/modules/render/tracks/featureCounts/index.js start line: 162 end line: 190 size: 29 LOC McCabe index: 7 number of parameters: 1 id: 761 unit: async updateCache() file: client/client/modules/render/tracks/blast/index.js start line: 35 end line: 63 size: 29 LOC McCabe index: 10 number of parameters: 0 id: 762 unit: static transform() file: client/client/modules/render/tracks/seg/segTransformer.js start line: 3 end line: 34 size: 29 LOC McCabe index: 5 number of parameters: 2 id: 763 unit: static partition() file: client/client/modules/render/utilities/sorting.js start line: 45 end line: 73 size: 29 LOC McCabe index: 11 number of parameters: 5 id: 764 unit: constructor() file: client/client/modules/render/heatmap/animation/animation.js start line: 22 end line: 50 size: 29 LOC McCabe index: 4 number of parameters: 1 id: 765 unit: refreshRenderer() file: client/client/modules/render/heatmap/index.js start line: 89 end line: 122 size: 29 LOC McCabe index: 9 number of parameters: 1 id: 766 unit: constructor() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 103 end line: 143 size: 29 LOC McCabe index: 11 number of parameters: 1 id: 767 unit: export function getPointProjectionInfo() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 156 end line: 184 size: 29 LOC McCabe index: 2 number of parameters: 2 id: 768 unit: static parse() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 28 end line: 57 size: 29 LOC McCabe index: 8 number of parameters: 2 id: 769 unit: reloadFromStorage() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 158 end line: 186 size: 29 LOC McCabe index: 7 number of parameters: 0 id: 770 unit: set padding() file: client/client/modules/render/heatmap/heatmap-view.js start line: 114 end line: 142 size: 29 LOC McCabe index: 6 number of parameters: 1 id: 771 unit: validate() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 518 end line: 546 size: 29 LOC McCabe index: 7 number of parameters: 0 id: 772 unit: changeFeatureRenderer() file: client/client/modules/render/variant-render/variant-renderer.js start line: 106 end line: 134 size: 29 LOC McCabe index: 11 number of parameters: 0 id: 773 unit: defaultGridOptions() file: client/client/modules/uiGridGroupColumns/ui-grid-group-columns.js start line: 28 end line: 73 size: 29 LOC McCabe index: 5 number of parameters: 1 id: 774 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/species/SpeciesListHandler.java start line: 65 end line: 92 size: 28 LOC McCabe index: 5 number of parameters: 0 id: 775 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/reference/ReferenceRegistrationHandler.java start line: 109 end line: 136 size: 28 LOC McCabe index: 8 number of parameters: 2 id: 776 unit: public static Handler createSAMRecordHandler() file: server/catgenome/src/main/java/com/epam/catgenome/util/BamUtil.java start line: 133 end line: 161 size: 28 LOC McCabe index: 4 number of parameters: 5 id: 777 unit: public Set getAvailableFieldValues() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 480 end line: 507 size: 28 LOC McCabe index: 6 number of parameters: 2 id: 778 unit: public IndexSearchResult searchFileIndexes() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 520 end line: 554 size: 28 LOC McCabe index: 4 number of parameters: 5 id: 779 unit: public List getChromosomeIdsWhereVariationsPresentFacet() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 927 end line: 961 size: 28 LOC McCabe index: 5 number of parameters: 2 id: 780 unit: private void addVcfDocumentInfoFields() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/BigVcfDocumentBuilder.java start line: 365 end line: 395 size: 28 LOC McCabe index: 6 number of parameters: 2 id: 781 unit: public static ProjectItemVO convertTo() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/ProjectConverter.java start line: 109 end line: 141 size: 28 LOC McCabe index: 4 number of parameters: 1 id: 782 unit: public BamFile registerBam() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamManager.java start line: 118 end line: 148 size: 28 LOC McCabe index: 5 number of parameters: 1 id: 783 unit: public GeneFile registerGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 196 end line: 225 size: 28 LOC McCabe index: 7 number of parameters: 1 id: 784 unit: private Variation getPreviousVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 145 end line: 172 size: 28 LOC McCabe index: 5 number of parameters: 5 id: 785 unit: private void fillVariationList() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIShortVarManager.java start line: 240 end line: 273 size: 28 LOC McCabe index: 6 number of parameters: 2 id: 786 unit: public List getGeneSequencesTable() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/sequence/NCBISequenceManager.java start line: 75 end line: 102 size: 28 LOC McCabe index: 5 number of parameters: 3 id: 787 unit: public void makeVcfIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 762 end line: 793 size: 28 LOC McCabe index: 3 number of parameters: 1 id: 788 unit: private FilePathFormat determineFilePathFormat() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2117 end line: 2145 size: 28 LOC McCabe index: 8 number of parameters: 1 id: 789 unit: static GCContainer getContainer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataWriter.java start line: 257 end line: 287 size: 28 LOC McCabe index: 5 number of parameters: 1 id: 790 unit: loadHeatmapTree() file: client/client/dataServices/heatmap/heatmap-data-service.js start line: 101 end line: 130 size: 28 LOC McCabe index: 4 number of parameters: 2 id: 791 unit: loadChromosomeByName() file: client/client/dataServices/genome/genome-data-service.js start line: 85 end line: 112 size: 28 LOC McCabe index: 6 number of parameters: 2 id: 792 unit: getRolesColumns() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 153 end line: 180 size: 28 LOC McCabe index: 1 number of parameters: 0 id: 793 unit: static getIndexFileForTrack() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 239 end line: 266 size: 28 LOC McCabe index: 9 number of parameters: 2 id: 794 unit: export function modelOptionsEquals() file: client/client/app/shared/components/ngbLLM/utilities.js start line: 73 end line: 100 size: 28 LOC McCabe index: 8 number of parameters: 3 id: 795 unit: export function toConfig() file: client/client/app/shared/components/ngbGoldenLayout/internal/goldenLayout.js start line: 30 end line: 101 size: 28 LOC McCabe index: 7 number of parameters: 1 id: 796 unit: handlePanelChange() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 282 end line: 309 size: 28 LOC McCabe index: 16 number of parameters: 1 id: 797 unit: panelAddBlatSearchPanel() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 543 end line: 574 size: 28 LOC McCabe index: 7 number of parameters: 1 id: 798 unit: correctPosition() file: client/client/app/shared/components/widgets/ngbColorPicker/ngbColorPicker.controller.js start line: 42 end line: 69 size: 28 LOC McCabe index: 6 number of parameters: 1 id: 799 unit: function findSelectedDatasets() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 1 end line: 28 size: 28 LOC McCabe index: 13 number of parameters: 1 id: 800 unit: setStructureResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 234 end line: 261 size: 28 LOC McCabe index: 5 number of parameters: 1 id: 801 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 118 end line: 146 size: 28 LOC McCabe index: 4 number of parameters: 5 id: 802 unit: async function setGenesInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetSavedIdentificationsDialog/ngbTargetSavedIdentificationsDialog.run.js start line: 67 end line: 94 size: 28 LOC McCabe index: 5 number of parameters: 1 id: 803 unit: getAddRequest() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 466 end line: 493 size: 28 LOC McCabe index: 6 number of parameters: 0 id: 804 unit: setGeneModel() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 929 end line: 956 size: 28 LOC McCabe index: 10 number of parameters: 3 id: 805 unit: saveColumnsState() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.controller.js start line: 188 end line: 218 size: 28 LOC McCabe index: 6 number of parameters: 0 id: 806 unit: saveColumnsState() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.controller.js start line: 132 end line: 162 size: 28 LOC McCabe index: 5 number of parameters: 0 id: 807 unit: saveColumnsState() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.controller.js start line: 132 end line: 162 size: 28 LOC McCabe index: 5 number of parameters: 0 id: 808 unit: didClickOnItem() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbBookmarksFilterList.controller.js start line: 155 end line: 182 size: 28 LOC McCabe index: 6 number of parameters: 1 id: 809 unit: saveColumnsState() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 284 end line: 314 size: 28 LOC McCabe index: 5 number of parameters: 0 id: 810 unit: async initialize() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 98 end line: 125 size: 28 LOC McCabe index: 2 number of parameters: 0 id: 811 unit: saveColumnsState() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 154 end line: 199 size: 28 LOC McCabe index: 6 number of parameters: 0 id: 812 unit: async initialize() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistory.controller.js start line: 82 end line: 110 size: 28 LOC McCabe index: 1 number of parameters: 0 id: 813 unit: saveColumnsState() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistory.controller.js start line: 150 end line: 180 size: 28 LOC McCabe index: 5 number of parameters: 0 id: 814 unit: saveBrowserView() file: client/client/app/components/ngbTracksView/managers/ngbTracksView.camera.manager.js start line: 20 end line: 48 size: 28 LOC McCabe index: 7 number of parameters: 0 id: 815 unit: controller() file: client/client/app/components/ngbTracksView/ngbTrack/events/ngbTrackMenu.component.js start line: 5 end line: 33 size: 28 LOC McCabe index: 6 number of parameters: 3 id: 816 unit: setAnnotation() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.service.js start line: 168 end line: 195 size: 28 LOC McCabe index: 4 number of parameters: 1 id: 817 unit: saveColumnsState() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.controller.js start line: 144 end line: 174 size: 28 LOC McCabe index: 5 number of parameters: 0 id: 818 unit: _formatTreeToClient() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 124 end line: 159 size: 28 LOC McCabe index: 3 number of parameters: 1 id: 819 unit: _onMouseWheel() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 161 end line: 188 size: 28 LOC McCabe index: 4 number of parameters: 1 id: 820 unit: translateStartPosition() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 175 end line: 202 size: 28 LOC McCabe index: 7 number of parameters: 1 id: 821 unit: renderScrollBar() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 730 end line: 759 size: 28 LOC McCabe index: 3 number of parameters: 0 id: 822 unit: _renderDeletion() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 341 end line: 368 size: 28 LOC McCabe index: 2 number of parameters: 1 id: 823 unit: hoverRead() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderProcessor.js start line: 151 end line: 178 size: 28 LOC McCabe index: 3 number of parameters: 6 id: 824 unit: _checkCoverage() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 539 end line: 566 size: 28 LOC McCabe index: 10 number of parameters: 2 id: 825 unit: export function layoutReads() file: client/client/modules/render/tracks/bam/internal/transformers/layoutReads.js start line: 131 end line: 160 size: 28 LOC McCabe index: 5 number of parameters: 1 id: 826 unit: function colorPerform() file: client/client/modules/render/tracks/motifs/exterior/motifsMenuConfig.js start line: 4 end line: 38 size: 28 LOC McCabe index: 14 number of parameters: 2 id: 827 unit: static analyzeGene() file: client/client/modules/render/tracks/gene/internal/data/geneTransformer.js start line: 127 end line: 154 size: 28 LOC McCabe index: 12 number of parameters: 1 id: 828 unit: onMove() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/vcfRenderer.js start line: 177 end line: 204 size: 28 LOC McCabe index: 6 number of parameters: 1 id: 829 unit: createRuler() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 109 end line: 144 size: 28 LOC McCabe index: 3 number of parameters: 3 id: 830 unit: _changeGCContentReferenceGraph() file: client/client/modules/render/tracks/reference/referenceRenderer.js start line: 120 end line: 148 size: 28 LOC McCabe index: 4 number of parameters: 2 id: 831 unit: registerTrackData() file: client/client/modules/render/utilities/groupAutoScaleManager.js start line: 131 end line: 158 size: 28 LOC McCabe index: 8 number of parameters: 2 id: 832 unit: constructor() file: client/client/modules/render/heatmap/interactions/events/interactive-zone-event.js start line: 10 end line: 105 size: 28 LOC McCabe index: 7 number of parameters: 3 id: 833 unit: export default function cancellablePromise() file: client/client/modules/render/heatmap/renderer/data-renderer/utilities/cancellable-promise.js start line: 1 end line: 28 size: 28 LOC McCabe index: 4 number of parameters: 2 id: 834 unit: static getAminoacidSequence() file: client/client/modules/render/variant-render/transformers/short-variant-transformer.js start line: 379 end line: 434 size: 28 LOC McCabe index: 7 number of parameters: 4 id: 835 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/reference/AbstractAnnotationReferenceHandler.java start line: 69 end line: 98 size: 27 LOC McCabe index: 5 number of parameters: 2 id: 836 unit: protected Pair parseAndVerifyFilePath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 827 end line: 857 size: 27 LOC McCabe index: 8 number of parameters: 1 id: 837 unit: private void grantOrDeletePermission() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/GrantPermissionHandler.java start line: 181 end line: 209 size: 27 LOC McCabe index: 5 number of parameters: 7 id: 838 unit: private static int reg2bins() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 201 end line: 229 size: 27 LOC McCabe index: 8 number of parameters: 3 id: 839 unit: private InputStream initStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 274 end line: 305 size: 27 LOC McCabe index: 6 number of parameters: 2 id: 840 unit: public BedRecord() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 61 end line: 91 size: 27 LOC McCabe index: 5 number of parameters: 1 id: 841 unit: public void deleteProjectItems() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 490 end line: 523 size: 27 LOC McCabe index: 3 number of parameters: 2 id: 842 unit: public IndexSearchResult searchFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 290 end line: 320 size: 27 LOC McCabe index: 3 number of parameters: 3 id: 843 unit: public IndexSearchResult searchGeneFeaturesFully() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 1070 end line: 1100 size: 27 LOC McCabe index: 5 number of parameters: 4 id: 844 unit: private void addNumberInfo() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 165 end line: 194 size: 27 LOC McCabe index: 5 number of parameters: 6 id: 845 unit: public List loadExonsInTrack() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 866 end line: 897 size: 27 LOC McCabe index: 4 number of parameters: 5 id: 846 unit: private String downloadFileFromURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/DownloadFileManager.java start line: 117 end line: 145 size: 27 LOC McCabe index: 5 number of parameters: 2 id: 847 unit: private static void parseSymbolicVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 669 end line: 695 size: 27 LOC McCabe index: 8 number of parameters: 2 id: 848 unit: public Variation getNextOrPreviousVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 395 end line: 423 size: 27 LOC McCabe index: 9 number of parameters: 7 id: 849 unit: public void convert() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genepred/GenePredManager.java start line: 80 end line: 107 size: 27 LOC McCabe index: 4 number of parameters: 2 id: 850 unit: private List parseDrugPatents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/PatentsManager.java start line: 201 end line: 227 size: 27 LOC McCabe index: 4 number of parameters: 2 id: 851 unit: public void updateTaskStatuses() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskScheduledService.java start line: 54 end line: 81 size: 27 LOC McCabe index: 4 number of parameters: 0 id: 852 unit: public SearchResult search() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 72 end line: 100 size: 27 LOC McCabe index: 8 number of parameters: 3 id: 853 unit: public void deleteGeneHelperFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1428 end line: 1457 size: 27 LOC McCabe index: 5 number of parameters: 3 id: 854 unit: public void makeBedGraphIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1685 end line: 1716 size: 27 LOC McCabe index: 2 number of parameters: 1 id: 855 unit: public StrandedSequence getPreviousMotif() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 187 end line: 220 size: 27 LOC McCabe index: 4 number of parameters: 1 id: 856 unit: private void attachGenesFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 432 end line: 458 size: 27 LOC McCabe index: 3 number of parameters: 3 id: 857 unit: getFullLeft() file: client/client/dataServices/bam/bam-data-service.js start line: 170 end line: 196 size: 27 LOC McCabe index: 4 number of parameters: 3 id: 858 unit: getFullCenter() file: client/client/dataServices/bam/bam-data-service.js start line: 202 end line: 228 size: 27 LOC McCabe index: 4 number of parameters: 3 id: 859 unit: getFullRight() file: client/client/dataServices/bam/bam-data-service.js start line: 235 end line: 261 size: 27 LOC McCabe index: 4 number of parameters: 3 id: 860 unit: updateDirectoryPath() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 174 end line: 200 size: 27 LOC McCabe index: 4 number of parameters: 0 id: 861 unit: constructor() file: client/client/app/shared/components/ngbDatasetItemDownloadUrl/ngbDatasetItemDownloadUrl.controller.js start line: 5 end line: 31 size: 27 LOC McCabe index: 3 number of parameters: 2 id: 862 unit: constructor() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 34 end line: 65 size: 27 LOC McCabe index: 2 number of parameters: 7 id: 863 unit: getVariantVisualizerData() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.controller.js start line: 97 end line: 123 size: 27 LOC McCabe index: 9 number of parameters: 0 id: 864 unit: recoverAlternativeExonStructure() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 662 end line: 688 size: 27 LOC McCabe index: 8 number of parameters: 3 id: 865 unit: loadVariantInfo() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantInfo/ngbVariantInfo.service.js start line: 22 end line: 49 size: 27 LOC McCabe index: 4 number of parameters: 3 id: 866 unit: constructor() file: client/client/app/shared/components/ngbHeatmap/ngbHeatmap.controller.js start line: 7 end line: 36 size: 27 LOC McCabe index: 5 number of parameters: 4 id: 867 unit: getRead() file: client/client/app/shared/bisulfiteModeContext/index.js start line: 121 end line: 147 size: 27 LOC McCabe index: 8 number of parameters: 1 id: 868 unit: clearVariantFieldFilter() file: client/client/app/shared/projectContext/index.js start line: 1369 end line: 1395 size: 27 LOC McCabe index: 7 number of parameters: 1 id: 869 unit: async setVcfInfo() file: client/client/app/shared/projectContext/index.js start line: 1920 end line: 1948 size: 27 LOC McCabe index: 7 number of parameters: 1 id: 870 unit: downloadReport() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 118 end line: 147 size: 27 LOC McCabe index: 2 number of parameters: 1 id: 871 unit: async launchTarget() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbTargetsTableMenu/ngbTargetsTableMenu.controller.js start line: 60 end line: 86 size: 27 LOC McCabe index: 2 number of parameters: 0 id: 872 unit: setGenomicsParasiteData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 442 end line: 468 size: 27 LOC McCabe index: 2 number of parameters: 1 id: 873 unit: async getGenomicsParasiteData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 487 end line: 513 size: 27 LOC McCabe index: 3 number of parameters: 0 id: 874 unit: getRequestFilter() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 220 end line: 246 size: 27 LOC McCabe index: 14 number of parameters: 0 id: 875 unit: addColumnToTable() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableColumn/ngbGenesTableColumn.controller.js start line: 56 end line: 82 size: 27 LOC McCabe index: 5 number of parameters: 0 id: 876 unit: getPDBKey() file: client/client/app/components/ngbMolecularViewer/ngbMolecularViewer.service.js start line: 14 end line: 40 size: 27 LOC McCabe index: 4 number of parameters: 2 id: 877 unit: export default function run() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackFontSize/ngbTrackFontSize.run.js start line: 3 end line: 30 size: 27 LOC McCabe index: 2 number of parameters: 2 id: 878 unit: static getTooltipContent() file: client/client/modules/render/tracks/bam/internal/transformers/bamReadsCoverageTransformer.js start line: 17 end line: 48 size: 27 LOC McCabe index: 7 number of parameters: 2 id: 879 unit: function getInsertSizePairOrientationType() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 228 end line: 256 size: 27 LOC McCabe index: 11 number of parameters: 2 id: 880 unit: get stateKeys() file: client/client/modules/render/tracks/bam/index.js start line: 131 end line: 157 size: 27 LOC McCabe index: 1 number of parameters: 0 id: 881 unit: export default function generateStateMutatorHelpers() file: client/client/modules/render/tracks/common/scaleModes/menuHelpers.js start line: 126 end line: 152 size: 27 LOC McCabe index: 1 number of parameters: 1 id: 882 unit: changeShortenedBrush() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 109 end line: 135 size: 27 LOC McCabe index: 4 number of parameters: 0 id: 883 unit: onDragEnd() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 297 end line: 323 size: 27 LOC McCabe index: 11 number of parameters: 1 id: 884 unit: onDragMove() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 325 end line: 351 size: 27 LOC McCabe index: 9 number of parameters: 1 id: 885 unit: function getSourceExtremum() file: client/client/modules/render/tracks/featureCounts/internal/data/featureCountsTransformer.js start line: 22 end line: 48 size: 27 LOC McCabe index: 5 number of parameters: 2 id: 886 unit: export default function linearDimensionsConflict() file: client/client/modules/render/utilities/linearDimensionsConflicts.js start line: 82 end line: 118 size: 27 LOC McCabe index: 12 number of parameters: 5 id: 887 unit: export default function renderCenterLine() file: client/client/modules/render/utilities/renderCenterLine.js start line: 4 end line: 30 size: 27 LOC McCabe index: 3 number of parameters: 2 id: 888 unit: destroy() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 92 end line: 118 size: 27 LOC McCabe index: 7 number of parameters: 0 id: 889 unit: move() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 233 end line: 259 size: 27 LOC McCabe index: 5 number of parameters: 2 id: 890 unit: navigate() file: client/client/modules/render/heatmap/navigation/index.js start line: 66 end line: 92 size: 27 LOC McCabe index: 8 number of parameters: 2 id: 891 unit: static fromResponse() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 96 end line: 122 size: 27 LOC McCabe index: 1 number of parameters: 2 id: 892 unit: static getAminoacidSequences() file: client/client/modules/render/variant-render/transformers/short-variant-transformer.js start line: 351 end line: 377 size: 27 LOC McCabe index: 9 number of parameters: 4 id: 893 unit: static file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItemFormat.java start line: 99 end line: 124 size: 26 LOC McCabe index: 1 number of parameters: 0 id: 894 unit: public Motif next() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/SimpleMotifSearchIterator.java start line: 116 end line: 141 size: 26 LOC McCabe index: 5 number of parameters: 0 id: 895 unit: public static Read createReadFromRecord() file: server/catgenome/src/main/java/com/epam/catgenome/util/BamUtil.java start line: 85 end line: 112 size: 26 LOC McCabe index: 2 number of parameters: 6 id: 896 unit: private static String complement() file: server/catgenome/src/main/java/com/epam/catgenome/util/ProteinSequenceUtils.java start line: 173 end line: 199 size: 26 LOC McCabe index: 7 number of parameters: 1 id: 897 unit: private void validateRequiredClaims() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtTokenVerifier.java start line: 112 end line: 137 size: 26 LOC McCabe index: 8 number of parameters: 1 id: 898 unit: private boolean processHierarchicalEntity() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 223 end line: 251 size: 26 LOC McCabe index: 8 number of parameters: 6 id: 899 unit: public void createBiologicalDataItem() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 105 end line: 134 size: 26 LOC McCabe index: 4 number of parameters: 1 id: 900 unit: public GeneFilterInfo getAvailableFieldsToSearch() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 453 end line: 478 size: 26 LOC McCabe index: 6 number of parameters: 1 id: 901 unit: protected Set getRequiredFields() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/BigVcfDocumentBuilder.java start line: 185 end line: 210 size: 26 LOC McCabe index: 3 number of parameters: 0 id: 902 unit: private void simplifyGeneIds() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 330 end line: 357 size: 26 LOC McCabe index: 4 number of parameters: 7 id: 903 unit: protected Document copyDocument() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/AbstractDocumentBuilder.java start line: 189 end line: 217 size: 26 LOC McCabe index: 2 number of parameters: 1 id: 904 unit: public void updateItemPath() file: server/catgenome/src/main/java/com/epam/catgenome/manager/UpdateItemPathManager.java start line: 83 end line: 108 size: 26 LOC McCabe index: 7 number of parameters: 3 id: 905 unit: private Track loadTrackFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 218 end line: 244 size: 26 LOC McCabe index: 4 number of parameters: 3 id: 906 unit: public BedFile delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedFileManager.java start line: 111 end line: 139 size: 26 LOC McCabe index: 1 number of parameters: 1 id: 907 unit: private NggbBedFeature decode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 121 end line: 152 size: 26 LOC McCabe index: 5 number of parameters: 1 id: 908 unit: protected void splitByChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/BedGraphProcessor.java start line: 104 end line: 129 size: 26 LOC McCabe index: 3 number of parameters: 3 id: 909 unit: public SAMRecordHandler() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 96 end line: 124 size: 26 LOC McCabe index: 4 number of parameters: 5 id: 910 unit: public String toString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 242 end line: 269 size: 26 LOC McCabe index: 5 number of parameters: 0 id: 911 unit: public Track loadHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 611 end line: 639 size: 26 LOC McCabe index: 6 number of parameters: 1 id: 912 unit: private static void determineVariationType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 477 end line: 502 size: 26 LOC McCabe index: 7 number of parameters: 3 id: 913 unit: public Track readVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 92 end line: 117 size: 26 LOC McCabe index: 6 number of parameters: 7 id: 914 unit: public SampledTrack loadFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegManager.java start line: 128 end line: 157 size: 26 LOC McCabe index: 4 number of parameters: 1 id: 915 unit: private void parseIndexFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaIndex.java start line: 39 end line: 71 size: 26 LOC McCabe index: 4 number of parameters: 1 id: 916 unit: loadGeneTrack() file: client/client/dataServices/gene/gene-data-service.js start line: 29 end line: 55 size: 26 LOC McCabe index: 4 number of parameters: 2 id: 917 unit: set routeInfo() file: client/client/app/shared/heatmapContext/index.js start line: 121 end line: 146 size: 26 LOC McCabe index: 4 number of parameters: 1 id: 918 unit: export function mergeUserOptions() file: client/client/app/shared/components/ngbLLM/utilities.js start line: 21 end line: 46 size: 26 LOC McCabe index: 9 number of parameters: 2 id: 919 unit: goldenLayoutDefaultConfig() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.service.js start line: 110 end line: 139 size: 26 LOC McCabe index: 6 number of parameters: 0 id: 920 unit: constructor() file: client/client/app/shared/components/widgets/ngbColorPicker/ngbColorPicker.controller.js start line: 10 end line: 35 size: 26 LOC McCabe index: 5 number of parameters: 3 id: 921 unit: metadataChangedHandler() file: client/client/app/shared/projectContext/index.js start line: 889 end line: 916 size: 26 LOC McCabe index: 13 number of parameters: 1 id: 922 unit: saveNote() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 440 end line: 465 size: 26 LOC McCabe index: 7 number of parameters: 1 id: 923 unit: export default function nvd3Resizer() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/nvd3-resizer.js start line: 1 end line: 26 size: 26 LOC McCabe index: 9 number of parameters: 0 id: 924 unit: async getBlastResultLoad() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 458 end line: 483 size: 26 LOC McCabe index: 3 number of parameters: 0 id: 925 unit: setTableResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 517 end line: 542 size: 26 LOC McCabe index: 5 number of parameters: 1 id: 926 unit: async generateTMAP() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 118 end line: 143 size: 26 LOC McCabe index: 3 number of parameters: 0 id: 927 unit: async initialize() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.controller.js start line: 76 end line: 103 size: 26 LOC McCabe index: 2 number of parameters: 0 id: 928 unit: getOrthoParaResult() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.service.js start line: 117 end line: 142 size: 26 LOC McCabe index: 3 number of parameters: 1 id: 929 unit: getHomologeneResult() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.service.js start line: 118 end line: 143 size: 26 LOC McCabe index: 3 number of parameters: 1 id: 930 unit: template: require() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.run.js start line: 7 end line: 36 size: 26 LOC McCabe index: 8 number of parameters: 1 id: 931 unit: updateParentNodeStateFn() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 144 end line: 172 size: 26 LOC McCabe index: 13 number of parameters: 1 id: 932 unit: async loadGenes() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 335 end line: 360 size: 26 LOC McCabe index: 6 number of parameters: 2 id: 933 unit: getDataOnPage() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 314 end line: 340 size: 26 LOC McCabe index: 5 number of parameters: 1 id: 934 unit: addColumnToTable() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableColumn/ngbVariantsTableColumn.controller.js start line: 59 end line: 84 size: 26 LOC McCabe index: 5 number of parameters: 0 id: 935 unit: apply() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbCoverageFilterList.controller.js start line: 125 end line: 150 size: 26 LOC McCabe index: 5 number of parameters: 0 id: 936 unit: preprocessAdditionalParam() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/ngbBlastSearchForm.controller.js start line: 191 end line: 216 size: 26 LOC McCabe index: 10 number of parameters: 4 id: 937 unit: async loadBlastHistory() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 142 end line: 167 size: 26 LOC McCabe index: 3 number of parameters: 1 id: 938 unit: downloadResults() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.controller.js start line: 61 end line: 89 size: 26 LOC McCabe index: 4 number of parameters: 1 id: 939 unit: $onInit() file: client/client/app/components/ngbTracksView/ngbTracksView.controller.js start line: 69 end line: 94 size: 26 LOC McCabe index: 2 number of parameters: 0 id: 940 unit: initialize() file: client/client/modules/render/core/viewport/baseViewport.js start line: 81 end line: 107 size: 26 LOC McCabe index: 12 number of parameters: 4 id: 941 unit: function wrapPerformFn() file: client/client/modules/render/core/menu/buildMenu.js start line: 79 end line: 104 size: 26 LOC McCabe index: 5 number of parameters: 7 id: 942 unit: trackSettingsChanged() file: client/client/modules/render/tracks/bam/index.js start line: 314 end line: 339 size: 26 LOC McCabe index: 9 number of parameters: 1 id: 943 unit: _getDockableElementsBoundaries() file: client/client/modules/render/tracks/gene/internal/renderer/features/featureRenderer.js start line: 298 end line: 323 size: 26 LOC McCabe index: 7 number of parameters: 1 id: 944 unit: static transformPartialHistogramData() file: client/client/modules/render/tracks/gene/internal/data/geneTransformer.js start line: 62 end line: 87 size: 26 LOC McCabe index: 5 number of parameters: 2 id: 945 unit: generateAttachedElement() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/commonVariantFeatureRenderer.js start line: 33 end line: 58 size: 26 LOC McCabe index: 5 number of parameters: 4 id: 946 unit: cacheExists() file: client/client/modules/render/utilities/zonesManager.js start line: 41 end line: 66 size: 26 LOC McCabe index: 10 number of parameters: 3 id: 947 unit: constructor() file: client/client/modules/render/heatmap/interactions/events/interactive-zone-drag-event.js start line: 16 end line: 81 size: 26 LOC McCabe index: 2 number of parameters: 4 id: 948 unit: getScrollerParameters() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 222 end line: 247 size: 26 LOC McCabe index: 1 number of parameters: 0 id: 949 unit: function normalizeVector() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 58 end line: 83 size: 26 LOC McCabe index: 6 number of parameters: 1 id: 950 unit: export function rotate() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 282 end line: 307 size: 26 LOC McCabe index: 2 number of parameters: 2 id: 951 unit: static parse() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 31 end line: 56 size: 26 LOC McCabe index: 5 number of parameters: 2 id: 952 unit: constructor() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 62 end line: 95 size: 26 LOC McCabe index: 10 number of parameters: 1 id: 953 unit: int run() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/Application.java start line: 307 end line: 332 size: 25 LOC McCabe index: 4 number of parameters: 1 id: 954 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/UrlGeneratorHandler.java start line: 55 end line: 83 size: 25 LOC McCabe index: 7 number of parameters: 2 id: 955 unit: private CommandHandler createCommandHandler() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandManager.java start line: 100 end line: 124 size: 25 LOC McCabe index: 5 number of parameters: 3 id: 956 unit: public static AbstractFeatureReader getFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractEnhancedFeatureReader.java start line: 88 end line: 114 size: 25 LOC McCabe index: 5 number of parameters: 5 id: 957 unit: public JwtTokenClaims readClaims() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtTokenVerifier.java start line: 69 end line: 94 size: 25 LOC McCabe index: 4 number of parameters: 1 id: 958 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItemFormat.java start line: 143 end line: 167 size: 25 LOC McCabe index: 1 number of parameters: 0 id: 959 unit: public void addProjectItems() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 345 end line: 375 size: 25 LOC McCabe index: 4 number of parameters: 2 id: 960 unit: public FacetsConfig createFacetsConfig() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/BigVcfDocumentBuilder.java start line: 79 end line: 108 size: 25 LOC McCabe index: 1 number of parameters: 1 id: 961 unit: public MafFile registerMafFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafManager.java start line: 106 end line: 130 size: 25 LOC McCabe index: 5 number of parameters: 1 id: 962 unit: private void processLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/UpdateItemPathManager.java start line: 124 end line: 148 size: 25 LOC McCabe index: 4 number of parameters: 5 id: 963 unit: public String getChatResponse() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/GCPPaLM2.java start line: 107 end line: 132 size: 25 LOC McCabe index: 1 number of parameters: 2 id: 964 unit: private List getRegions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 356 end line: 382 size: 25 LOC McCabe index: 3 number of parameters: 4 id: 965 unit: private List getSummarizedCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 205 end line: 232 size: 25 LOC McCabe index: 5 number of parameters: 1 id: 966 unit: private String resolveFeatureNameForTranslation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceManager.java start line: 281 end line: 306 size: 25 LOC McCabe index: 3 number of parameters: 2 id: 967 unit: protected void collapseFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GffReader.java start line: 101 end line: 134 size: 25 LOC McCabe index: 7 number of parameters: 5 id: 968 unit: public GeneFile delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneFileManager.java start line: 98 end line: 124 size: 25 LOC McCabe index: 1 number of parameters: 1 id: 969 unit: public String toString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GtfFeature.java start line: 83 end line: 108 size: 25 LOC McCabe index: 4 number of parameters: 0 id: 970 unit: private GeneFile createGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 394 end line: 423 size: 25 LOC McCabe index: 3 number of parameters: 1 id: 971 unit: private Variation getPreviousVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 262 end line: 289 size: 25 LOC McCabe index: 4 number of parameters: 6 id: 972 unit: private void determineVariationType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 542 end line: 566 size: 25 LOC McCabe index: 7 number of parameters: 3 id: 973 unit: public NCBIVariationVO fetchAggregatedVariationById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIShortVarManager.java start line: 90 end line: 121 size: 25 LOC McCabe index: 5 number of parameters: 1 id: 974 unit: public List fetchVariationsOnRegion() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIShortVarManager.java start line: 160 end line: 194 size: 25 LOC McCabe index: 3 number of parameters: 4 id: 975 unit: private Map getTranscriptDescriptions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/sequence/NCBISequenceManager.java start line: 153 end line: 177 size: 25 LOC McCabe index: 7 number of parameters: 1 id: 976 unit: public NGBPathway createPathway() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 165 end line: 189 size: 25 LOC McCabe index: 2 number of parameters: 3 id: 977 unit: public FeatureReader makeVcfReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 727 end line: 752 size: 25 LOC McCabe index: 3 number of parameters: 1 id: 978 unit: private long registerReference() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 586 end line: 613 size: 25 LOC McCabe index: 4 number of parameters: 3 id: 979 unit: private long registerGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 634 end line: 659 size: 25 LOC McCabe index: 2 number of parameters: 3 id: 980 unit: private void verifyMotifSearchRequest() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 222 end line: 246 size: 25 LOC McCabe index: 5 number of parameters: 1 id: 981 unit: function parseQuotedString() file: client/client/dataServices/utils/highlight-condition-service.js start line: 284 end line: 308 size: 25 LOC McCabe index: 7 number of parameters: 1 id: 982 unit: static analyzeSequence() file: client/client/dataServices/vcf/vcf-analyzer.js start line: 274 end line: 301 size: 25 LOC McCabe index: 15 number of parameters: 3 id: 983 unit: constructor() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 40 end line: 68 size: 25 LOC McCabe index: 2 number of parameters: 6 id: 984 unit: updateGroup() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 115 end line: 139 size: 25 LOC McCabe index: 5 number of parameters: 5 id: 985 unit: duplicateExonSrtructure() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 690 end line: 714 size: 25 LOC McCabe index: 5 number of parameters: 1 id: 986 unit: generatedUrl() file: client/client/app/shared/components/ngbHeader/ngbShareLinkMenu/ngbShareLinkMenu.controller.js start line: 34 end line: 60 size: 25 LOC McCabe index: 7 number of parameters: 0 id: 987 unit: exportResults() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 298 end line: 325 size: 25 LOC McCabe index: 2 number of parameters: 0 id: 988 unit: exportResults() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 315 end line: 342 size: 25 LOC McCabe index: 2 number of parameters: 0 id: 989 unit: exportResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 131 end line: 158 size: 25 LOC McCabe index: 2 number of parameters: 0 id: 990 unit: exportResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.controller.js start line: 51 end line: 78 size: 25 LOC McCabe index: 2 number of parameters: 0 id: 991 unit: exportResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 489 end line: 516 size: 25 LOC McCabe index: 2 number of parameters: 0 id: 992 unit: async buildAbstracts() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 115 end line: 139 size: 25 LOC McCabe index: 7 number of parameters: 0 id: 993 unit: exportResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 315 end line: 342 size: 25 LOC McCabe index: 2 number of parameters: 0 id: 994 unit: exportResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 80 end line: 107 size: 25 LOC McCabe index: 2 number of parameters: 0 id: 995 unit: getGeneForRequest() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 715 end line: 739 size: 25 LOC McCabe index: 11 number of parameters: 2 id: 996 unit: apply() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterRange/ngbTargetGenesFilterRange.controller.js start line: 38 end line: 62 size: 25 LOC McCabe index: 9 number of parameters: 0 id: 997 unit: function metadataIsEqual() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 3 end line: 27 size: 25 LOC McCabe index: 14 number of parameters: 2 id: 998 unit: async select() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 159 end line: 183 size: 25 LOC McCabe index: 4 number of parameters: 3 id: 999 unit: blastSearch() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableContextMenu/ngbGenesTableContextMenu.controller.js start line: 60 end line: 84 size: 25 LOC McCabe index: 2 number of parameters: 2 id: 1000 unit: rowClick() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 136 end line: 161 size: 25 LOC McCabe index: 3 number of parameters: 1 id: 1001 unit: setAdditionalParams() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/ngbBlastSearchForm.controller.js start line: 134 end line: 158 size: 25 LOC McCabe index: 8 number of parameters: 0 id: 1002 unit: _renderHeatMapItems() file: client/client/modules/render/tracks/wig/wigRenderer.js start line: 363 end line: 387 size: 25 LOC McCabe index: 4 number of parameters: 6 id: 1003 unit: function createMinimalRender() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 55 end line: 80 size: 25 LOC McCabe index: 7 number of parameters: 3 id: 1004 unit: static analyzeTranscriptAminoacidStructure() file: client/client/modules/render/tracks/gene/internal/data/geneTransformer.js start line: 272 end line: 296 size: 25 LOC McCabe index: 11 number of parameters: 1 id: 1005 unit: getSettings() file: client/client/modules/render/tracks/vcf/index.js start line: 143 end line: 172 size: 25 LOC McCabe index: 9 number of parameters: 0 id: 1006 unit: transformData() file: client/client/modules/render/tracks/featureCounts/internal/data/featureCountsTransformer.js start line: 51 end line: 75 size: 25 LOC McCabe index: 11 number of parameters: 1 id: 1007 unit: render() file: client/client/modules/render/tracks/blast/index.js start line: 163 end line: 187 size: 25 LOC McCabe index: 8 number of parameters: 1 id: 1008 unit: render() file: client/client/modules/render/tracks/comparison/index.js start line: 108 end line: 132 size: 25 LOC McCabe index: 8 number of parameters: 1 id: 1009 unit: _drawTrackRowItem() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 190 end line: 214 size: 25 LOC McCabe index: 2 number of parameters: 2 id: 1010 unit: destroy() file: client/client/modules/render/heatmap/heatmap-view.js start line: 183 end line: 207 size: 25 LOC McCabe index: 5 number of parameters: 0 id: 1011 unit: getZoneDefaultHeight() file: client/client/modules/render/variant-render/renderers/zones/variant-zones-manager.js start line: 51 end line: 75 size: 25 LOC McCabe index: 7 number of parameters: 1 id: 1012 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/gene/GeneAddingHandler.java start line: 71 end line: 97 size: 24 LOC McCabe index: 4 number of parameters: 2 id: 1013 unit: protected void configure() file: server/catgenome/src/main/java/com/epam/catgenome/app/JWTSecurityConfiguration.java start line: 96 end line: 120 size: 24 LOC McCabe index: 2 number of parameters: 1 id: 1014 unit: public MotifSearchIterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/MotifSearchIterator.java start line: 60 end line: 84 size: 24 LOC McCabe index: 6 number of parameters: 7 id: 1015 unit: public static AbstractFeatureReader getFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 97 end line: 123 size: 24 LOC McCabe index: 5 number of parameters: 5 id: 1016 unit: private AclImpl convert() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 377 end line: 422 size: 24 LOC McCabe index: 4 number of parameters: 2 id: 1017 unit: protected void populateLocalEntity() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLContextProviderCustomSignKey.java start line: 54 end line: 82 size: 24 LOC McCabe index: 5 number of parameters: 1 id: 1018 unit: private Endpoint getEndpoint() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/CustomSAMLProcessingFilter.java start line: 62 end line: 86 size: 24 LOC McCabe index: 7 number of parameters: 3 id: 1019 unit: public Gene() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Gene.java start line: 115 end line: 142 size: 24 LOC McCabe index: 2 number of parameters: 1 id: 1020 unit: private List fillEntryDetails() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 268 end line: 295 size: 24 LOC McCabe index: 4 number of parameters: 3 id: 1021 unit: private List splitAmbiguousInfoFields() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 359 end line: 386 size: 24 LOC McCabe index: 6 number of parameters: 2 id: 1022 unit: protected GeneIndexEntry createSpecificEntry() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/GeneDocumentBuilder.java start line: 102 end line: 130 size: 24 LOC McCabe index: 4 number of parameters: 1 id: 1023 unit: protected Track getWigFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/BedGraphProcessor.java start line: 69 end line: 92 size: 24 LOC McCabe index: 3 number of parameters: 4 id: 1024 unit: private void write() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageManager.java start line: 230 end line: 258 size: 24 LOC McCabe index: 2 number of parameters: 1 id: 1025 unit: public void add() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/ConstantMemorySAMRecordSampler.java start line: 96 end line: 125 size: 24 LOC McCabe index: 6 number of parameters: 6 id: 1026 unit: private void flushList() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/StandardSAMRecordSifter.java start line: 145 end line: 175 size: 24 LOC McCabe index: 8 number of parameters: 0 id: 1027 unit: protected BamFile fillBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 279 end line: 305 size: 24 LOC McCabe index: 3 number of parameters: 1 id: 1028 unit: private SamInputResource loadIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 508 end line: 531 size: 24 LOC McCabe index: 6 number of parameters: 2 id: 1029 unit: private void processCigarOperator() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 377 end line: 400 size: 24 LOC McCabe index: 8 number of parameters: 2 id: 1030 unit: private Read getReadFromBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamManager.java start line: 245 end line: 269 size: 24 LOC McCabe index: 4 number of parameters: 3 id: 1031 unit: protected void collapseFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GtfReader.java start line: 95 end line: 126 size: 24 LOC McCabe index: 7 number of parameters: 5 id: 1032 unit: public Track loadGenesTranscript() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneTrackManager.java start line: 181 end line: 206 size: 24 LOC McCabe index: 4 number of parameters: 3 id: 1033 unit: public List saveGeneActivities() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneActivityService.java start line: 53 end line: 83 size: 24 LOC McCabe index: 2 number of parameters: 2 id: 1034 unit: private void addToMetamapAndHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 381 end line: 407 size: 24 LOC McCabe index: 4 number of parameters: 5 id: 1035 unit: private int processExon() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 1037 end line: 1062 size: 24 LOC McCabe index: 4 number of parameters: 6 id: 1036 unit: private void loadSamples() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 501 end line: 525 size: 24 LOC McCabe index: 6 number of parameters: 3 id: 1037 unit: private void setGenotypeData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 567 end line: 590 size: 24 LOC McCabe index: 9 number of parameters: 3 id: 1038 unit: private VcfFile createVcfFromUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 652 end line: 676 size: 24 LOC McCabe index: 4 number of parameters: 3 id: 1039 unit: private void extendInfoField() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 944 end line: 967 size: 24 LOC McCabe index: 5 number of parameters: 2 id: 1040 unit: public void addGeneFeatureToIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 720 end line: 746 size: 24 LOC McCabe index: 4 number of parameters: 3 id: 1041 unit: public void saveGenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 217 end line: 240 size: 24 LOC McCabe index: 3 number of parameters: 1 id: 1042 unit: public JsonNode summaryEntityById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 227 end line: 256 size: 24 LOC McCabe index: 4 number of parameters: 2 id: 1043 unit: public List searchOrganismsByIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 129 end line: 153 size: 24 LOC McCabe index: 2 number of parameters: 1 id: 1044 unit: private void createBioPAX() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 264 end line: 287 size: 24 LOC McCabe index: 2 number of parameters: 1 id: 1045 unit: public boolean checkGeneFileExists() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1310 end line: 1336 size: 24 LOC McCabe index: 5 number of parameters: 2 id: 1046 unit: public void byteArrayToNibFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataWriter.java start line: 73 end line: 101 size: 24 LOC McCabe index: 4 number of parameters: 2 id: 1047 unit: getVariantInfo() file: client/client/dataServices/vcf/vcf-data-service.js start line: 19 end line: 42 size: 24 LOC McCabe index: 3 number of parameters: 1 id: 1048 unit: $onInit() file: client/client/app/shared/components/ngbFloatingPanel/controller.js start line: 38 end line: 62 size: 24 LOC McCabe index: 5 number of parameters: 0 id: 1049 unit: correctPosition() file: client/client/app/shared/components/ngbFloatingPanel/controller.js start line: 83 end line: 106 size: 24 LOC McCabe index: 3 number of parameters: 1 id: 1050 unit: export function browserPopoutToConfig() file: client/client/app/shared/components/ngbGoldenLayout/internal/goldenLayout.js start line: 4 end line: 27 size: 24 LOC McCabe index: 5 number of parameters: 0 id: 1051 unit: const sortChromosomesFn = function() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 127 end line: 150 size: 24 LOC McCabe index: 11 number of parameters: 2 id: 1052 unit: affectedGeneChanged() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.controller.js start line: 125 end line: 149 size: 24 LOC McCabe index: 5 number of parameters: 2 id: 1053 unit: getReadCytosineMismatch() file: client/client/app/shared/bisulfiteModeContext/index.js start line: 313 end line: 336 size: 24 LOC McCabe index: 7 number of parameters: 1 id: 1054 unit: variantsFieldIsFiltered() file: client/client/app/shared/projectContext/index.js start line: 1344 end line: 1367 size: 24 LOC McCabe index: 12 number of parameters: 1 id: 1055 unit: async _selectTrackById() file: client/client/app/shared/services/api.service.js start line: 533 end line: 583 size: 24 LOC McCabe index: 4 number of parameters: 2 id: 1056 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 49 end line: 73 size: 24 LOC McCabe index: 1 number of parameters: 7 id: 1057 unit: updateTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 651 end line: 674 size: 24 LOC McCabe index: 2 number of parameters: 0 id: 1058 unit: getMotifsResultsGridColumns() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 133 end line: 157 size: 24 LOC McCabe index: 3 number of parameters: 0 id: 1059 unit: async refreshResults() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 266 end line: 289 size: 24 LOC McCabe index: 4 number of parameters: 0 id: 1060 unit: constructor() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbMotifsResultsFilterList.controller.js start line: 27 end line: 50 size: 24 LOC McCabe index: 1 number of parameters: 5 id: 1061 unit: async loadData() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.controller.js start line: 92 end line: 115 size: 24 LOC McCabe index: 4 number of parameters: 0 id: 1062 unit: async initialize() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResultTable/ngbOrthoParaResultTable.controller.js start line: 78 end line: 101 size: 24 LOC McCabe index: 1 number of parameters: 0 id: 1063 unit: loadData() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResultTable/ngbOrthoParaResultTable.controller.js start line: 103 end line: 126 size: 24 LOC McCabe index: 4 number of parameters: 0 id: 1064 unit: async loadData() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.controller.js start line: 92 end line: 115 size: 24 LOC McCabe index: 4 number of parameters: 0 id: 1065 unit: async initialize() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResultTable/ngbHomologeneResultTable.controller.js start line: 76 end line: 99 size: 24 LOC McCabe index: 1 number of parameters: 0 id: 1066 unit: loadData() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResultTable/ngbHomologeneResultTable.controller.js start line: 101 end line: 124 size: 24 LOC McCabe index: 4 number of parameters: 0 id: 1067 unit: async loadData() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.controller.js start line: 114 end line: 137 size: 24 LOC McCabe index: 4 number of parameters: 0 id: 1068 unit: configureProjectElements() file: client/client/app/components/ngbDataSets/internal/ngbDataSetContextMenu/ngbDataSetContextMenu.controller.js start line: 64 end line: 87 size: 24 LOC McCabe index: 7 number of parameters: 0 id: 1069 unit: rowClick() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 201 end line: 225 size: 24 LOC McCabe index: 3 number of parameters: 1 id: 1070 unit: async getSequence() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 203 end line: 226 size: 24 LOC McCabe index: 7 number of parameters: 0 id: 1071 unit: _formatServerToClient() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.service.js start line: 93 end line: 117 size: 24 LOC McCabe index: 6 number of parameters: 1 id: 1072 unit: export default function run() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbMotifsColorPreference/ngbMotifsColorPreference.run.js start line: 3 end line: 27 size: 24 LOC McCabe index: 4 number of parameters: 2 id: 1073 unit: export default function run() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbWigColorPreference/ngbWigColorPreference.run.js start line: 3 end line: 27 size: 24 LOC McCabe index: 4 number of parameters: 2 id: 1074 unit: hideTrack() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 505 end line: 528 size: 24 LOC McCabe index: 7 number of parameters: 1 id: 1075 unit: save() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.service.js start line: 197 end line: 221 size: 24 LOC McCabe index: 6 number of parameters: 1 id: 1076 unit: async initialize() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.controller.js start line: 73 end line: 96 size: 24 LOC McCabe index: 2 number of parameters: 0 id: 1077 unit: constructor() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysFilterList/ngbInternalPathwaysFilterList.controller.js start line: 13 end line: 36 size: 24 LOC McCabe index: 3 number of parameters: 3 id: 1078 unit: function wrapNode() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 174 end line: 198 size: 24 LOC McCabe index: 11 number of parameters: 1 id: 1079 unit: searchNode() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 443 end line: 466 size: 24 LOC McCabe index: 5 number of parameters: 2 id: 1080 unit: render() file: client/client/modules/render/tracks/wig/index.js start line: 114 end line: 138 size: 24 LOC McCabe index: 10 number of parameters: 1 id: 1081 unit: _renderSpliceJunction() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 469 end line: 492 size: 24 LOC McCabe index: 1 number of parameters: 1 id: 1082 unit: aminoacidsFitsViewport() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/aminoacidFeatureRenderer.js start line: 102 end line: 125 size: 24 LOC McCabe index: 8 number of parameters: 2 id: 1083 unit: renderHistogram() file: client/client/modules/render/tracks/gene/internal/renderer/features/geneHistogram.js start line: 26 end line: 49 size: 24 LOC McCabe index: 5 number of parameters: 2 id: 1084 unit: calculateHighlightArea() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/commonVariantFeatureRenderer.js start line: 64 end line: 87 size: 24 LOC McCabe index: 4 number of parameters: 3 id: 1085 unit: analyzeBoundaries() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/statisticsFeatureRenderer.js start line: 11 end line: 34 size: 24 LOC McCabe index: 1 number of parameters: 2 id: 1086 unit: buildVariantTypeLabel() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 118 end line: 141 size: 24 LOC McCabe index: 4 number of parameters: 1 id: 1087 unit: globalSettingsChanged() file: client/client/modules/render/tracks/vcf/index.js start line: 118 end line: 141 size: 24 LOC McCabe index: 6 number of parameters: 1 id: 1088 unit: getTooltipDataObject() file: client/client/modules/render/tracks/vcf/index.js start line: 427 end line: 450 size: 24 LOC McCabe index: 6 number of parameters: 2 id: 1089 unit: async getProjectsFilterVcfInfo() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 106 end line: 131 size: 24 LOC McCabe index: 8 number of parameters: 0 id: 1090 unit: getZoneActualRange() file: client/client/modules/render/utilities/zonesManager.js start line: 197 end line: 220 size: 24 LOC McCabe index: 11 number of parameters: 1 id: 1091 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/SortHandler.java start line: 79 end line: 106 size: 23 LOC McCabe index: 7 number of parameters: 2 id: 1092 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/dataset/DatasetDescriptionAdditionHandler.java start line: 72 end line: 97 size: 23 LOC McCabe index: 5 number of parameters: 0 id: 1093 unit: public void print() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/PrintPermissionsHelper.java start line: 64 end line: 89 size: 23 LOC McCabe index: 4 number of parameters: 2 id: 1094 unit: private ServerParameters loadServerParameters() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandManager.java start line: 144 end line: 166 size: 23 LOC McCabe index: 1 number of parameters: 1 id: 1095 unit: private String reverseComplementAddToLowerCase() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/SimpleMotifSearchIterator.java start line: 143 end line: 165 size: 23 LOC McCabe index: 6 number of parameters: 1 id: 1096 unit: private Index retrieveIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 133 end line: 155 size: 23 LOC McCabe index: 5 number of parameters: 1 id: 1097 unit: public static String checkExistingIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 122 end line: 145 size: 23 LOC McCabe index: 6 number of parameters: 1 id: 1098 unit: public static void checkSorted() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 192 end line: 218 size: 23 LOC McCabe index: 7 number of parameters: 4 id: 1099 unit: protected void doFilterInternal() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtFilterAuthenticationFilter.java start line: 59 end line: 81 size: 23 LOC McCabe index: 3 number of parameters: 3 id: 1100 unit: public boolean sessionIsReadable() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 354 end line: 376 size: 23 LOC McCabe index: 6 number of parameters: 1 id: 1101 unit: private static BiologicalDataItem mapReference() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 581 end line: 609 size: 23 LOC McCabe index: 4 number of parameters: 1 id: 1102 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 285 end line: 310 size: 23 LOC McCabe index: 3 number of parameters: 0 id: 1103 unit: protected Set getRequiredFields() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/GeneDocumentBuilder.java start line: 77 end line: 99 size: 23 LOC McCabe index: 3 number of parameters: 0 id: 1104 unit: static RowMapper getReferenceGenomeMetaDataMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 554 end line: 581 size: 23 LOC McCabe index: 3 number of parameters: 0 id: 1105 unit: public static UniprotEntryVO convertTo() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/UniprotConverter.java start line: 62 end line: 94 size: 23 LOC McCabe index: 3 number of parameters: 1 id: 1106 unit: public List getBaseCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 179 end line: 203 size: 23 LOC McCabe index: 6 number of parameters: 1 id: 1107 unit: private void addBaseCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 470 end line: 492 size: 23 LOC McCabe index: 8 number of parameters: 2 id: 1108 unit: protected void groupMrnaStuff() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 585 end line: 607 size: 23 LOC McCabe index: 4 number of parameters: 2 id: 1109 unit: public void convert() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsToGffConvertor.java start line: 61 end line: 83 size: 23 LOC McCabe index: 3 number of parameters: 4 id: 1110 unit: public Gene getNextOrPreviousFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 708 end line: 733 size: 23 LOC McCabe index: 5 number of parameters: 4 id: 1111 unit: private void loadProjectItems() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 456 end line: 482 size: 23 LOC McCabe index: 4 number of parameters: 1 id: 1112 unit: private boolean checkBoundsForCompressedFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 329 end line: 352 size: 23 LOC McCabe index: 7 number of parameters: 3 id: 1113 unit: private List getOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 456 end line: 478 size: 23 LOC McCabe index: 5 number of parameters: 1 id: 1114 unit: private void makeTabixCompressedIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2212 end line: 2241 size: 23 LOC McCabe index: 3 number of parameters: 4 id: 1115 unit: public Heatmap createHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 99 end line: 121 size: 23 LOC McCabe index: 2 number of parameters: 1 id: 1116 unit: public List getNucleotidesFromNibFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 287 end line: 310 size: 23 LOC McCabe index: 3 number of parameters: 4 id: 1117 unit: constructor() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.controller.js start line: 33 end line: 57 size: 23 LOC McCabe index: 3 number of parameters: 6 id: 1118 unit: affectedGeneTranscriptChanged() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.controller.js start line: 151 end line: 174 size: 23 LOC McCabe index: 5 number of parameters: 1 id: 1119 unit: function extractCdsRegions() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 1179 end line: 1201 size: 23 LOC McCabe index: 10 number of parameters: 2 id: 1120 unit: refreshDatasetNotes() file: client/client/app/shared/projectContext/index.js start line: 1017 end line: 1039 size: 23 LOC McCabe index: 11 number of parameters: 2 id: 1121 unit: _trackFormat() file: client/client/app/shared/services/api.service.js start line: 392 end line: 414 size: 23 LOC McCabe index: 10 number of parameters: 1 id: 1122 unit: searchFinished() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 134 end line: 156 size: 23 LOC McCabe index: 6 number of parameters: 2 id: 1123 unit: getDisease() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 65 end line: 87 size: 23 LOC McCabe index: 2 number of parameters: 1 id: 1124 unit: prepareSVG() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 148 end line: 170 size: 23 LOC McCabe index: 6 number of parameters: 0 id: 1125 unit: searchFinished() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 124 end line: 146 size: 23 LOC McCabe index: 6 number of parameters: 2 id: 1126 unit: getTargetAlignment() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 166 end line: 188 size: 23 LOC McCabe index: 3 number of parameters: 2 id: 1127 unit: getFilteredParasiteResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 515 end line: 537 size: 23 LOC McCabe index: 7 number of parameters: 0 id: 1128 unit: getDrugs() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 296 end line: 318 size: 23 LOC McCabe index: 2 number of parameters: 0 id: 1129 unit: searchFinished() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 131 end line: 153 size: 23 LOC McCabe index: 6 number of parameters: 2 id: 1130 unit: didClickOnItem() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 106 end line: 128 size: 23 LOC McCabe index: 6 number of parameters: 1 id: 1131 unit: searchFinished() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 130 end line: 152 size: 23 LOC McCabe index: 6 number of parameters: 2 id: 1132 unit: async getTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 358 end line: 380 size: 23 LOC McCabe index: 1 number of parameters: 1 id: 1133 unit: postNewTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 495 end line: 517 size: 23 LOC McCabe index: 2 number of parameters: 0 id: 1134 unit: searchFinished() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 142 end line: 164 size: 23 LOC McCabe index: 6 number of parameters: 2 id: 1135 unit: deleteGeneFromTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 497 end line: 520 size: 23 LOC McCabe index: 3 number of parameters: 2 id: 1136 unit: onChangeColumn() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsFormActions/ngbTargetsFormActions.controller.js start line: 75 end line: 97 size: 23 LOC McCabe index: 4 number of parameters: 0 id: 1137 unit: searchFinished() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbMotifsResultsFilterList.controller.js start line: 93 end line: 115 size: 23 LOC McCabe index: 6 number of parameters: 2 id: 1138 unit: template: require() file: client/client/app/components/ngbMotifsPanel/ngbMotifsDialog.run.js start line: 9 end line: 31 size: 23 LOC McCabe index: 2 number of parameters: 1 id: 1139 unit: saveColumnsState() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResultTable/ngbOrthoParaResultTable.controller.js start line: 138 end line: 160 size: 23 LOC McCabe index: 5 number of parameters: 0 id: 1140 unit: saveColumnsState() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResultTable/ngbHomologeneResultTable.controller.js start line: 136 end line: 158 size: 23 LOC McCabe index: 5 number of parameters: 0 id: 1141 unit: export function findProject() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 257 end line: 279 size: 23 LOC McCabe index: 9 number of parameters: 2 id: 1142 unit: rowClick() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 259 end line: 282 size: 23 LOC McCabe index: 6 number of parameters: 2 id: 1143 unit: constructor() file: client/client/app/components/ngbGenomeAnnotations/ngbGenomeAnnotations.controller.js start line: 12 end line: 35 size: 23 LOC McCabe index: 1 number of parameters: 5 id: 1144 unit: constructor() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageTableFilters.controller.js start line: 10 end line: 32 size: 23 LOC McCabe index: 5 number of parameters: 1 id: 1145 unit: searchFinished() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbCoverageFilterList.controller.js start line: 152 end line: 174 size: 23 LOC McCabe index: 6 number of parameters: 2 id: 1146 unit: async getCurrentSearchResult() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 302 end line: 324 size: 23 LOC McCabe index: 3 number of parameters: 0 id: 1147 unit: saveColumnsState() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.controller.js start line: 111 end line: 133 size: 23 LOC McCabe index: 5 number of parameters: 0 id: 1148 unit: export default function run() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbBedColorPreference/ngbBedColorPreference.run.js start line: 3 end line: 26 size: 23 LOC McCabe index: 4 number of parameters: 2 id: 1149 unit: constructor() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbWigColorPreference/ngbWigColorPreference.controller.js start line: 9 end line: 31 size: 23 LOC McCabe index: 1 number of parameters: 8 id: 1150 unit: onAnnotationTypeChange() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 286 end line: 308 size: 23 LOC McCabe index: 3 number of parameters: 0 id: 1151 unit: constructor() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbInternalPathwayNode.controller.js start line: 14 end line: 36 size: 23 LOC McCabe index: 6 number of parameters: 4 id: 1152 unit: fileAnnotation() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 525 end line: 548 size: 23 LOC McCabe index: 5 number of parameters: 2 id: 1153 unit: initializeEventListeners() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 243 end line: 285 size: 23 LOC McCabe index: 1 number of parameters: 0 id: 1154 unit: createTicks() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 136 end line: 161 size: 23 LOC McCabe index: 3 number of parameters: 2 id: 1155 unit: function colorPerform() file: client/client/modules/render/tracks/bed/menu/generalMenu.js start line: 4 end line: 33 size: 23 LOC McCabe index: 10 number of parameters: 2 id: 1156 unit: onMove() file: client/client/modules/render/tracks/wig/wigRenderer.js start line: 410 end line: 432 size: 23 LOC McCabe index: 7 number of parameters: 3 id: 1157 unit: _getStyleForBase() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 386 end line: 408 size: 23 LOC McCabe index: 5 number of parameters: 1 id: 1158 unit: _renderAlignments() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 460 end line: 482 size: 23 LOC McCabe index: 4 number of parameters: 2 id: 1159 unit: function getInsertSizeType() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 202 end line: 226 size: 23 LOC McCabe index: 9 number of parameters: 2 id: 1160 unit: onHover() file: client/client/modules/render/tracks/bam/index.js start line: 602 end line: 624 size: 23 LOC McCabe index: 5 number of parameters: 2 id: 1161 unit: _getLabelStyleConfig() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/aminoacidFeatureRenderer.js start line: 57 end line: 79 size: 23 LOC McCabe index: 4 number of parameters: 3 id: 1162 unit: hoverItem() file: client/client/modules/render/tracks/gene/internal/renderer/features/geneHistogram.js start line: 64 end line: 86 size: 23 LOC McCabe index: 3 number of parameters: 3 id: 1163 unit: isHistogramDrawingModeForViewport() file: client/client/modules/render/tracks/gene/internal/data/geneTransformer.js start line: 24 end line: 46 size: 23 LOC McCabe index: 11 number of parameters: 2 id: 1164 unit: onClick() file: client/client/modules/render/tracks/gene/index.js start line: 292 end line: 316 size: 23 LOC McCabe index: 9 number of parameters: 2 id: 1165 unit: analyzeBoundaries() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/commonVariantFeatureRenderer.js start line: 9 end line: 31 size: 23 LOC McCabe index: 1 number of parameters: 2 id: 1166 unit: constructor() file: client/client/modules/render/tracks/heatmap/index.js start line: 18 end line: 44 size: 23 LOC McCabe index: 1 number of parameters: 1 id: 1167 unit: constructor() file: client/client/modules/render/heatmap/interactions/index.js start line: 10 end line: 42 size: 23 LOC McCabe index: 5 number of parameters: 2 id: 1168 unit: constructor() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/index.js start line: 14 end line: 36 size: 23 LOC McCabe index: 2 number of parameters: 3 id: 1169 unit: getLabelBounds() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/axis-label.js start line: 352 end line: 374 size: 23 LOC McCabe index: 6 number of parameters: 2 id: 1170 unit: getPartialRebuildOptions() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/webgl-graphics.js start line: 91 end line: 113 size: 23 LOC McCabe index: 3 number of parameters: 1 id: 1171 unit: test() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 158 end line: 180 size: 23 LOC McCabe index: 12 number of parameters: 1 id: 1172 unit: serialize() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 128 end line: 150 size: 23 LOC McCabe index: 4 number of parameters: 0 id: 1173 unit: _renderVariantEffect() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 464 end line: 486 size: 23 LOC McCabe index: 4 number of parameters: 1 id: 1174 unit: public static BiologicalDataItemFormat getByFilePath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItemFormat.java start line: 194 end line: 215 size: 22 LOC McCabe index: 6 number of parameters: 2 id: 1175 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractEntityRenameHandler.java start line: 68 end line: 89 size: 22 LOC McCabe index: 5 number of parameters: 0 id: 1176 unit: public static T createNonRegisteredFile() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 413 end line: 435 size: 22 LOC McCabe index: 2 number of parameters: 4 id: 1177 unit: private static char complement() file: server/catgenome/src/main/java/com/epam/catgenome/util/ProteinSequenceUtils.java start line: 201 end line: 223 size: 22 LOC McCabe index: 6 number of parameters: 1 id: 1178 unit: public Integer retrieveMaskForSid() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 259 end line: 283 size: 22 LOC McCabe index: 10 number of parameters: 4 id: 1179 unit: private Map readAttributes() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLUserDetailsServiceImpl.java start line: 206 end line: 227 size: 22 LOC McCabe index: 7 number of parameters: 1 id: 1180 unit: private Map readSamlRolesMapping() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLUserDetailsServiceImpl.java start line: 229 end line: 252 size: 22 LOC McCabe index: 6 number of parameters: 0 id: 1181 unit: public Authentication attemptAuthentication() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/CustomSAMLProcessingFilter.java start line: 34 end line: 60 size: 22 LOC McCabe index: 4 number of parameters: 2 id: 1182 unit: public static BlastSequence fromEntries() file: server/catgenome/src/main/java/com/epam/catgenome/entity/blast/result/BlastSequence.java start line: 55 end line: 76 size: 22 LOC McCabe index: 1 number of parameters: 1 id: 1183 unit: private String getGroupByField() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 842 end line: 865 size: 22 LOC McCabe index: 6 number of parameters: 2 id: 1184 unit: private Set fetchGeneIds() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 1171 end line: 1192 size: 22 LOC McCabe index: 5 number of parameters: 2 id: 1185 unit: public static ProjectVO convertTo() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/ProjectConverter.java start line: 64 end line: 89 size: 22 LOC McCabe index: 3 number of parameters: 1 id: 1186 unit: public String sortFeatureFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/tools/ToolsManager.java start line: 63 end line: 89 size: 22 LOC McCabe index: 5 number of parameters: 1 id: 1187 unit: private List getMessages() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/GCPPaLM2.java start line: 135 end line: 156 size: 22 LOC McCabe index: 4 number of parameters: 1 id: 1188 unit: private WigFile fillWigFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/FacadeWigManager.java start line: 220 end line: 244 size: 22 LOC McCabe index: 2 number of parameters: 1 id: 1189 unit: private void fillEmitterByReads() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 327 end line: 354 size: 22 LOC McCabe index: 2 number of parameters: 4 id: 1190 unit: public SamInputResource loadFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 485 end line: 506 size: 22 LOC McCabe index: 6 number of parameters: 1 id: 1191 unit: public Track loadProteinSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceManager.java start line: 110 end line: 135 size: 22 LOC McCabe index: 3 number of parameters: 2 id: 1192 unit: protected void assembleFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GffReader.java start line: 137 end line: 162 size: 22 LOC McCabe index: 7 number of parameters: 5 id: 1193 unit: private void fillExonsCountForOverlappingIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 488 end line: 511 size: 22 LOC McCabe index: 6 number of parameters: 3 id: 1194 unit: private Track loadGenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneTrackManager.java start line: 302 end line: 325 size: 22 LOC McCabe index: 6 number of parameters: 5 id: 1195 unit: private void makeIndexes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 409 end line: 435 size: 22 LOC McCabe index: 4 number of parameters: 7 id: 1196 unit: private List recursiveConvert() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 562 end line: 588 size: 22 LOC McCabe index: 6 number of parameters: 2 id: 1197 unit: private void parseBNFDInfo() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 542 end line: 565 size: 22 LOC McCabe index: 7 number of parameters: 4 id: 1198 unit: private VariantSet variationMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 207 end line: 228 size: 22 LOC McCabe index: 3 number of parameters: 1 id: 1199 unit: public VcfFile reindexVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 486 end line: 507 size: 22 LOC McCabe index: 3 number of parameters: 2 id: 1200 unit: private void addFeaturesFromUsualGeneFileToIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 786 end line: 811 size: 22 LOC McCabe index: 9 number of parameters: 3 id: 1201 unit: public List readEntries() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIEnsemblIdsManager.java start line: 81 end line: 102 size: 22 LOC McCabe index: 4 number of parameters: 1 id: 1202 unit: public int pubmedDataCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneManager.java start line: 120 end line: 142 size: 22 LOC McCabe index: 4 number of parameters: 1 id: 1203 unit: public List search() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 122 end line: 143 size: 22 LOC McCabe index: 4 number of parameters: 2 id: 1204 unit: private void createGeneCompressedIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1540 end line: 1568 size: 22 LOC McCabe index: 3 number of parameters: 3 id: 1205 unit: public File makeFileForGeneIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1576 end line: 1599 size: 22 LOC McCabe index: 4 number of parameters: 2 id: 1206 unit: public List getGeneSequencesTable() file: server/catgenome/src/main/java/com/epam/catgenome/manager/sequence/SequencesManager.java start line: 116 end line: 137 size: 22 LOC McCabe index: 4 number of parameters: 2 id: 1207 unit: private void processContainer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataWriter.java start line: 210 end line: 231 size: 22 LOC McCabe index: 6 number of parameters: 2 id: 1208 unit: private void processCytobandRecord() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/CytobandManager.java start line: 155 end line: 185 size: 22 LOC McCabe index: 4 number of parameters: 3 id: 1209 unit: loadRead() file: client/client/dataServices/bam/bam-data-service.js start line: 266 end line: 287 size: 22 LOC McCabe index: 2 number of parameters: 1 id: 1210 unit: function generateRandomTree() file: client/client/dataServices/heatmap/heatmap-data-service.js start line: 24 end line: 45 size: 22 LOC McCabe index: 4 number of parameters: 1 id: 1211 unit: async setBamCoverage() file: client/client/app/shared/bamCoverageContext/index.js start line: 51 end line: 72 size: 22 LOC McCabe index: 3 number of parameters: 2 id: 1212 unit: constructor() file: client/client/app/shared/utils/events.js start line: 2 end line: 24 size: 22 LOC McCabe index: 1 number of parameters: 1 id: 1213 unit: getLineageState() file: client/client/app/shared/components/ngbMainToolbar/ngbBookmark/ngbBookmarkSaveDlg.controller.js start line: 46 end line: 67 size: 22 LOC McCabe index: 6 number of parameters: 0 id: 1214 unit: openMenu() file: client/client/app/shared/components/ngbMainToolbar/ngbToolWindows/ngbToolWindows.controller.js start line: 34 end line: 60 size: 22 LOC McCabe index: 8 number of parameters: 2 id: 1215 unit: INIT() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantInfo/ngbVariantInfo.controller.js start line: 27 end line: 50 size: 22 LOC McCabe index: 9 number of parameters: 0 id: 1216 unit: INIT() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantDbSnp/ngbVariantDbSnp.controller.js start line: 31 end line: 55 size: 22 LOC McCabe index: 9 number of parameters: 0 id: 1217 unit: getReadMethBase() file: client/client/app/shared/bisulfiteModeContext/index.js start line: 288 end line: 309 size: 22 LOC McCabe index: 7 number of parameters: 3 id: 1218 unit: async findAnyDatasetOfReference() file: client/client/app/shared/projectContext/index.js start line: 980 end line: 1001 size: 22 LOC McCabe index: 9 number of parameters: 1 id: 1219 unit: async _changeProject() file: client/client/app/shared/projectContext/index.js start line: 1525 end line: 1548 size: 22 LOC McCabe index: 6 number of parameters: 5 id: 1220 unit: _changeViewport() file: client/client/app/shared/projectContext/index.js start line: 2022 end line: 2043 size: 22 LOC McCabe index: 11 number of parameters: 1 id: 1221 unit: getRequest() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 341 end line: 362 size: 22 LOC McCabe index: 5 number of parameters: 0 id: 1222 unit: setAllResultsBySequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 485 end line: 506 size: 22 LOC McCabe index: 3 number of parameters: 1 id: 1223 unit: async sortChanged() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 603 end line: 624 size: 22 LOC McCabe index: 4 number of parameters: 2 id: 1224 unit: template: require() file: client/client/app/components/ngbVariantPanel/ngbVariantPanel.run.js start line: 9 end line: 35 size: 22 LOC McCabe index: 1 number of parameters: 1 id: 1225 unit: controller: function() file: client/client/app/components/ngbMotifsPanel/ngbMotifsDialog.run.js start line: 10 end line: 31 size: 22 LOC McCabe index: 2 number of parameters: 1 id: 1226 unit: setSearchMotifRequest() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 194 end line: 215 size: 22 LOC McCabe index: 4 number of parameters: 1 id: 1227 unit: search() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbAddUserRoleDlg.controller.js start line: 85 end line: 106 size: 22 LOC McCabe index: 5 number of parameters: 0 id: 1228 unit: setCoverageIndexes() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 75 end line: 96 size: 22 LOC McCabe index: 8 number of parameters: 0 id: 1229 unit: async loadData() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistory.controller.js start line: 112 end line: 133 size: 22 LOC McCabe index: 5 number of parameters: 0 id: 1230 unit: async getCurrentSearch() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 269 end line: 290 size: 22 LOC McCabe index: 5 number of parameters: 0 id: 1231 unit: fetchFeatureCoords() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 339 end line: 360 size: 22 LOC McCabe index: 9 number of parameters: 2 id: 1232 unit: _formatClientToServer() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 392 end line: 413 size: 22 LOC McCabe index: 7 number of parameters: 2 id: 1233 unit: export default function run() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackCoverageSettings/ngbTrackCoverageSettings.run.js start line: 1 end line: 71 size: 22 LOC McCabe index: 3 number of parameters: 2 id: 1234 unit: _onTouchEnded() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 91 end line: 112 size: 22 LOC McCabe index: 3 number of parameters: 1 id: 1235 unit: getChromosomeAreaWidth() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 177 end line: 198 size: 22 LOC McCabe index: 5 number of parameters: 1 id: 1236 unit: renderChromosomeLabel() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 586 end line: 607 size: 22 LOC McCabe index: 6 number of parameters: 3 id: 1237 unit: _checkItems() file: client/client/modules/render/tracks/wig/wigRenderer.js start line: 434 end line: 455 size: 22 LOC McCabe index: 6 number of parameters: 4 id: 1238 unit: trackSettingsChanged() file: client/client/modules/render/tracks/wig/index.js start line: 42 end line: 63 size: 22 LOC McCabe index: 6 number of parameters: 1 id: 1239 unit: _initReadColorModeFirstInPairStrand() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 149 end line: 170 size: 22 LOC McCabe index: 10 number of parameters: 1 id: 1240 unit: _renderInsertion() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 318 end line: 339 size: 22 LOC McCabe index: 2 number of parameters: 1 id: 1241 unit: _renderGroups() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 437 end line: 458 size: 22 LOC McCabe index: 4 number of parameters: 1 id: 1242 unit: render() file: client/client/modules/render/tracks/motifs/index.js start line: 187 end line: 208 size: 22 LOC McCabe index: 7 number of parameters: 1 id: 1243 unit: transformData() file: client/client/modules/render/tracks/gene/internal/data/geneTransformer.js start line: 89 end line: 110 size: 22 LOC McCabe index: 11 number of parameters: 2 id: 1244 unit: render() file: client/client/modules/render/tracks/gene/index.js start line: 258 end line: 279 size: 22 LOC McCabe index: 9 number of parameters: 1 id: 1245 unit: analyzeBoundaries() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/variantAltFeatureRenderer.js start line: 19 end line: 41 size: 22 LOC McCabe index: 6 number of parameters: 2 id: 1246 unit: constructor() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/index.js start line: 26 end line: 47 size: 22 LOC McCabe index: 4 number of parameters: 2 id: 1247 unit: rebuildContainer() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/vcfRenderer.js start line: 41 end line: 62 size: 22 LOC McCabe index: 1 number of parameters: 2 id: 1248 unit: changeCursor() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 214 end line: 235 size: 22 LOC McCabe index: 4 number of parameters: 3 id: 1249 unit: _getSelectionDescription() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 428 end line: 449 size: 22 LOC McCabe index: 5 number of parameters: 3 id: 1250 unit: analyzeBoundaries() file: client/client/modules/render/tracks/featureCounts/internal/renderer/features/drawing/fcFeatureRenderer.js start line: 60 end line: 81 size: 22 LOC McCabe index: 9 number of parameters: 2 id: 1251 unit: renderGroupAutoScaleIndicator() file: client/client/modules/render/tracks/featureCounts/internal/renderer/bar-chart/bar-chart-source-renderer.js start line: 86 end line: 107 size: 22 LOC McCabe index: 5 number of parameters: 2 id: 1252 unit: getTooltipDataObject() file: client/client/modules/render/tracks/comparison/index.js start line: 79 end line: 100 size: 22 LOC McCabe index: 7 number of parameters: 1 id: 1253 unit: manageAnimations() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 182 end line: 203 size: 22 LOC McCabe index: 3 number of parameters: 0 id: 1254 unit: export default function buildItemGraphics() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/build-item-graphics.js start line: 9 end line: 30 size: 22 LOC McCabe index: 8 number of parameters: 3 id: 1255 unit: buildGeometry() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry.js start line: 69 end line: 90 size: 22 LOC McCabe index: 5 number of parameters: 0 id: 1256 unit: constructor() file: client/client/modules/render/heatmap/heatmap-view.js start line: 38 end line: 71 size: 22 LOC McCabe index: 2 number of parameters: 1 id: 1257 unit: static v() file: client/client/modules/render/variant-render/transformers/short-variant-transformer.js start line: 436 end line: 470 size: 22 LOC McCabe index: 11 number of parameters: 9 id: 1258 unit: function SectionDetails() file: export-templates/target-identification/src/common/section/index.tsx start line: 18 end line: 39 size: 22 LOC McCabe index: 4 number of parameters: 1 id: 1259 unit: public String getFormatString() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 143 end line: 163 size: 21 LOC McCabe index: 5 number of parameters: 1 id: 1260 unit: protected List loadItemsByName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 412 end line: 432 size: 21 LOC McCabe index: 3 number of parameters: 2 id: 1261 unit: protected void checkAndPrintSpeciesResult() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 601 end line: 621 size: 21 LOC McCabe index: 5 number of parameters: 3 id: 1262 unit: public static byte complement() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/MotifSearchIterator.java start line: 155 end line: 175 size: 21 LOC McCabe index: 11 number of parameters: 1 id: 1263 unit: public static void calculateConsensusSequence() file: server/catgenome/src/main/java/com/epam/catgenome/util/ConsensusSequenceUtils.java start line: 64 end line: 92 size: 21 LOC McCabe index: 6 number of parameters: 2 id: 1264 unit: public T next() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 144 end line: 164 size: 21 LOC McCabe index: 4 number of parameters: 0 id: 1265 unit: private List readAuthorities() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLUserDetailsServiceImpl.java start line: 164 end line: 184 size: 21 LOC McCabe index: 5 number of parameters: 1 id: 1266 unit: public Gene() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Gene.java start line: 90 end line: 110 size: 21 LOC McCabe index: 1 number of parameters: 1 id: 1267 unit: public static MapSqlParameterSource getLinkedTableParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 630 end line: 654 size: 21 LOC McCabe index: 6 number of parameters: 2 id: 1268 unit: public List loadTopLevelProjectsStats() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 156 end line: 179 size: 21 LOC McCabe index: 4 number of parameters: 0 id: 1269 unit: private ScoreDoc createIndexEntries() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 1145 end line: 1168 size: 21 LOC McCabe index: 7 number of parameters: 6 id: 1270 unit: static NGBPathway parsePathway() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayDao.java start line: 143 end line: 163 size: 21 LOC McCabe index: 2 number of parameters: 1 id: 1271 unit: private PredictionServiceClient buildClient() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/GCPPaLM2.java start line: 185 end line: 205 size: 21 LOC McCabe index: 2 number of parameters: 0 id: 1272 unit: public CustomLLMHandler() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/CustomLLMHandler.java start line: 46 end line: 66 size: 21 LOC McCabe index: 3 number of parameters: 1 id: 1273 unit: private void fillBlocksNew() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigProcessor.java start line: 137 end line: 157 size: 21 LOC McCabe index: 6 number of parameters: 3 id: 1274 unit: private PSLRecord createRecord() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/PSLRecordParser.java start line: 98 end line: 120 size: 21 LOC McCabe index: 1 number of parameters: 1 id: 1275 unit: private void addProteinSequenceEntry() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceReconstructionManager.java start line: 548 end line: 568 size: 21 LOC McCabe index: 9 number of parameters: 7 id: 1276 unit: private void addToHelperFiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 449 end line: 471 size: 21 LOC McCabe index: 8 number of parameters: 2 id: 1277 unit: private Gene getNextGeneFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 735 end line: 761 size: 21 LOC McCabe index: 4 number of parameters: 4 id: 1278 unit: private List doReadVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 354 end line: 374 size: 21 LOC McCabe index: 6 number of parameters: 7 id: 1279 unit: private void parseInfo() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 520 end line: 540 size: 21 LOC McCabe index: 4 number of parameters: 5 id: 1280 unit: public GeneHighLevel loadGeneFeatureByUid() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 349 end line: 369 size: 21 LOC McCabe index: 3 number of parameters: 2 id: 1281 unit: public IndexSearchResult searchFeaturesInProject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 462 end line: 483 size: 21 LOC McCabe index: 5 number of parameters: 2 id: 1282 unit: public Map parseGeneInfos() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 217 end line: 237 size: 21 LOC McCabe index: 4 number of parameters: 1 id: 1283 unit: public List getCID() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pug/NCBIPugManager.java start line: 118 end line: 138 size: 21 LOC McCabe index: 5 number of parameters: 1 id: 1284 unit: private String getHttpResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/HttpDataManager.java start line: 232 end line: 258 size: 21 LOC McCabe index: 3 number of parameters: 3 id: 1285 unit: private void setSpeciesNames() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homolog/HomologManager.java start line: 287 end line: 307 size: 21 LOC McCabe index: 4 number of parameters: 1 id: 1286 unit: private void setSpeciesNames() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homolog/HomologManager.java start line: 309 end line: 329 size: 21 LOC McCabe index: 3 number of parameters: 1 id: 1287 unit: private String fetchFeatureNameFromNcbi() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastUtilManager.java start line: 105 end line: 127 size: 21 LOC McCabe index: 6 number of parameters: 2 id: 1288 unit: private String readSBGN() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 333 end line: 353 size: 21 LOC McCabe index: 5 number of parameters: 1 id: 1289 unit: private void makeMafIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1819 end line: 1843 size: 21 LOC McCabe index: 2 number of parameters: 2 id: 1290 unit: public Reference create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 128 end line: 148 size: 21 LOC McCabe index: 4 number of parameters: 1 id: 1291 unit: public Track loadCytobands() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/CytobandManager.java start line: 85 end line: 109 size: 21 LOC McCabe index: 4 number of parameters: 1 id: 1292 unit: public void saveCytobands() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/CytobandManager.java start line: 122 end line: 153 size: 21 LOC McCabe index: 4 number of parameters: 2 id: 1293 unit: const getReadsFn = function() file: client/client/dataServices/bam/bam-data-service.js start line: 35 end line: 67 size: 21 LOC McCabe index: 5 number of parameters: 1 id: 1294 unit: getGeneInfoHistory() file: client/client/dataServices/gene/gene-data-service.js start line: 194 end line: 214 size: 21 LOC McCabe index: 4 number of parameters: 1 id: 1295 unit: loadVcfTrack() file: client/client/dataServices/vcf/vcf-data-service.js start line: 44 end line: 64 size: 21 LOC McCabe index: 4 number of parameters: 1 id: 1296 unit: prepareDefaultHighlightProfile() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.controller.js start line: 106 end line: 126 size: 21 LOC McCabe index: 7 number of parameters: 1 id: 1297 unit: constructor() file: client/client/app/shared/components/ngbLLM/ngbLLM.controller.js start line: 20 end line: 40 size: 21 LOC McCabe index: 3 number of parameters: 3 id: 1298 unit: handleKeyPressed() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 258 end line: 280 size: 21 LOC McCabe index: 8 number of parameters: 1 id: 1299 unit: export function getCoordinatesText() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/parse-coordinates.js start line: 34 end line: 54 size: 21 LOC McCabe index: 8 number of parameters: 1 id: 1300 unit: const mapFn = function() file: client/client/app/shared/projectContext/index.js start line: 501 end line: 521 size: 21 LOC McCabe index: 8 number of parameters: 1 id: 1301 unit: const mapFn = function() file: client/client/app/shared/projectContext/index.js start line: 849 end line: 869 size: 21 LOC McCabe index: 7 number of parameters: 1 id: 1302 unit: get filteredItems() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetAddUserRoleDlg.controller.js start line: 12 end line: 32 size: 21 LOC McCabe index: 10 number of parameters: 0 id: 1303 unit: search() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetAddUserRoleDlg.controller.js start line: 78 end line: 98 size: 21 LOC McCabe index: 5 number of parameters: 0 id: 1304 unit: async addTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 144 end line: 164 size: 21 LOC McCabe index: 4 number of parameters: 0 id: 1305 unit: applyConfirmed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 207 end line: 227 size: 21 LOC McCabe index: 6 number of parameters: 0 id: 1306 unit: async getIdentificationData() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 132 end line: 152 size: 21 LOC McCabe index: 2 number of parameters: 2 id: 1307 unit: controller: function() file: client/client/app/components/ngbVariantPanel/ngbVariantPanel.run.js start line: 10 end line: 35 size: 21 LOC McCabe index: 1 number of parameters: 1 id: 1308 unit: getBlatSearchGridColumns() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.service.js start line: 97 end line: 128 size: 21 LOC McCabe index: 6 number of parameters: 0 id: 1309 unit: get filteredItems() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbAddUserRoleDlg.controller.js start line: 17 end line: 37 size: 21 LOC McCabe index: 10 number of parameters: 0 id: 1310 unit: selectItems() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 303 end line: 324 size: 21 LOC McCabe index: 4 number of parameters: 3 id: 1311 unit: initialize() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 236 end line: 256 size: 21 LOC McCabe index: 2 number of parameters: 0 id: 1312 unit: downloadFile() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 362 end line: 382 size: 21 LOC McCabe index: 2 number of parameters: 3 id: 1313 unit: async loadData() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 127 end line: 148 size: 21 LOC McCabe index: 6 number of parameters: 0 id: 1314 unit: getDataDown() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 266 end line: 288 size: 21 LOC McCabe index: 6 number of parameters: 0 id: 1315 unit: getDataUp() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 290 end line: 312 size: 21 LOC McCabe index: 5 number of parameters: 0 id: 1316 unit: async loadData() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.controller.js start line: 85 end line: 105 size: 21 LOC McCabe index: 4 number of parameters: 0 id: 1317 unit: get trackClosable() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 317 end line: 337 size: 21 LOC McCabe index: 9 number of parameters: 0 id: 1318 unit: constructor() file: client/client/app/components/ngbTracksView/ngbRulerTrack/ngbTrack.controller.js start line: 19 end line: 43 size: 21 LOC McCabe index: 7 number of parameters: 4 id: 1319 unit: constructor() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotationDlg/ngbPathwaysAnnotationAddDlg.controller.js start line: 2 end line: 22 size: 21 LOC McCabe index: 3 number of parameters: 4 id: 1320 unit: async loadData() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.controller.js start line: 98 end line: 118 size: 21 LOC McCabe index: 4 number of parameters: 0 id: 1321 unit: async getLineageTreeById() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 161 end line: 181 size: 21 LOC McCabe index: 3 number of parameters: 1 id: 1322 unit: getShortenedPositionInfo() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 243 end line: 263 size: 21 LOC McCabe index: 5 number of parameters: 1 id: 1323 unit: cacheUpdateParameters() file: client/client/modules/render/tracks/bed/index.js start line: 38 end line: 58 size: 21 LOC McCabe index: 5 number of parameters: 1 id: 1324 unit: _createLogScaleIndicator() file: client/client/modules/render/tracks/wig/wigArea.js start line: 56 end line: 79 size: 21 LOC McCabe index: 1 number of parameters: 0 id: 1325 unit: constructor() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 199 end line: 219 size: 21 LOC McCabe index: 3 number of parameters: 5 id: 1326 unit: async updatePrevNextInfo() file: client/client/modules/render/tracks/motifs/index.js start line: 210 end line: 241 size: 21 LOC McCabe index: 6 number of parameters: 0 id: 1327 unit: manageAttachedElements() file: client/client/modules/render/tracks/gene/internal/renderer/features/featureRenderer.js start line: 275 end line: 296 size: 21 LOC McCabe index: 8 number of parameters: 3 id: 1328 unit: drawHighlightArea() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 418 end line: 438 size: 21 LOC McCabe index: 2 number of parameters: 2 id: 1329 unit: _getLabelStyle() file: client/client/modules/render/tracks/reference/referenceRenderer.js start line: 164 end line: 185 size: 21 LOC McCabe index: 8 number of parameters: 2 id: 1330 unit: function getClosesBase() file: client/client/modules/render/utilities/coordinateSystem.js start line: 3 end line: 23 size: 21 LOC McCabe index: 5 number of parameters: 2 id: 1331 unit: getHoveredAxisItem() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 277 end line: 297 size: 21 LOC McCabe index: 7 number of parameters: 1 id: 1332 unit: destroy() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 83 end line: 103 size: 21 LOC McCabe index: 3 number of parameters: 0 id: 1333 unit: updateGeometryGradients() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/index.js start line: 94 end line: 114 size: 21 LOC McCabe index: 5 number of parameters: 1 id: 1334 unit: isVisible() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 429 end line: 449 size: 21 LOC McCabe index: 8 number of parameters: 0 id: 1335 unit: export function rotateRectangle() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 323 end line: 343 size: 21 LOC McCabe index: 2 number of parameters: 2 id: 1336 unit: assign() file: client/client/modules/render/heatmap/utilities/trie.js start line: 59 end line: 79 size: 21 LOC McCabe index: 8 number of parameters: 2 id: 1337 unit: parseZonesConfig() file: client/client/modules/render/variant-render/renderers/zones/variant-zones-manager.js start line: 29 end line: 49 size: 21 LOC McCabe index: 7 number of parameters: 1 id: 1338 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/SearchHandler.java start line: 72 end line: 91 size: 20 LOC McCabe index: 6 number of parameters: 0 id: 1339 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/user/DeleteUserGroupHandler.java start line: 58 end line: 80 size: 20 LOC McCabe index: 5 number of parameters: 2 id: 1340 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/blast/BlastDatabaseRegistrationHandler.java start line: 52 end line: 71 size: 20 LOC McCabe index: 5 number of parameters: 2 id: 1341 unit: protected void checkAndPrintRegistrationResult() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 474 end line: 493 size: 20 LOC McCabe index: 5 number of parameters: 3 id: 1342 unit: protected List loadListOfUsers() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 529 end line: 548 size: 20 LOC McCabe index: 3 number of parameters: 1 id: 1343 unit: protected void checkAndPrintDatasetResult() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 631 end line: 650 size: 20 LOC McCabe index: 5 number of parameters: 3 id: 1344 unit: private Pair setIndexPathFromServer() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 872 end line: 891 size: 20 LOC McCabe index: 3 number of parameters: 2 id: 1345 unit: public void onAuthenticationSuccess() file: server/catgenome/src/main/java/com/epam/catgenome/app/CustomAwareAuthenticationSuccessHandler.java start line: 45 end line: 69 size: 20 LOC McCabe index: 5 number of parameters: 3 id: 1346 unit: private PositionalBufferedStream initStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureIterator.java start line: 130 end line: 151 size: 20 LOC McCabe index: 5 number of parameters: 2 id: 1347 unit: public SortableRecord readNextRecord() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/Parser.java start line: 53 end line: 73 size: 20 LOC McCabe index: 6 number of parameters: 1 id: 1348 unit: public static Set getCellValues() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 567 end line: 586 size: 20 LOC McCabe index: 3 number of parameters: 3 id: 1349 unit: private static void calculateCount() file: server/catgenome/src/main/java/com/epam/catgenome/util/ConsensusSequenceUtils.java start line: 112 end line: 132 size: 20 LOC McCabe index: 6 number of parameters: 2 id: 1350 unit: private void readNextRecord() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 402 end line: 425 size: 20 LOC McCabe index: 5 number of parameters: 0 id: 1351 unit: private void validateParameters() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 266 end line: 285 size: 20 LOC McCabe index: 3 number of parameters: 5 id: 1352 unit: private void addPositionFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 265 end line: 285 size: 20 LOC McCabe index: 5 number of parameters: 1 id: 1353 unit: private void addGeneFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 218 end line: 239 size: 20 LOC McCabe index: 6 number of parameters: 1 id: 1354 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/FeatureType.java start line: 145 end line: 164 size: 20 LOC McCabe index: 1 number of parameters: 0 id: 1355 unit: private static BiologicalDataItem mapGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 542 end line: 565 size: 20 LOC McCabe index: 3 number of parameters: 3 id: 1356 unit: public IndexSearchResult searchFeaturesInInterval() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 322 end line: 345 size: 20 LOC McCabe index: 3 number of parameters: 4 id: 1357 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/VariantClassification.java start line: 55 end line: 74 size: 20 LOC McCabe index: 1 number of parameters: 0 id: 1358 unit: private BedFile createBedFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 291 end line: 310 size: 20 LOC McCabe index: 6 number of parameters: 1 id: 1359 unit: private void processLastRecord() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 587 end line: 607 size: 20 LOC McCabe index: 5 number of parameters: 3 id: 1360 unit: public GCPPaLM2() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/GCPPaLM2.java start line: 67 end line: 86 size: 20 LOC McCabe index: 1 number of parameters: 1 id: 1361 unit: public String getChatMessage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/OpenAIClient.java start line: 76 end line: 96 size: 20 LOC McCabe index: 1 number of parameters: 4 id: 1362 unit: private double queryWig() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigProcessor.java start line: 170 end line: 189 size: 20 LOC McCabe index: 6 number of parameters: 4 id: 1363 unit: private Query buildCoverageQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageManager.java start line: 314 end line: 333 size: 20 LOC McCabe index: 4 number of parameters: 1 id: 1364 unit: private CloseableIterator setIteratorFiltering() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 412 end line: 433 size: 20 LOC McCabe index: 6 number of parameters: 2 id: 1365 unit: protected void addUnmappedFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GffReader.java start line: 165 end line: 189 size: 20 LOC McCabe index: 3 number of parameters: 5 id: 1366 unit: protected void mapFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GtfReader.java start line: 69 end line: 92 size: 20 LOC McCabe index: 5 number of parameters: 5 id: 1367 unit: protected void assembleFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GtfReader.java start line: 129 end line: 152 size: 20 LOC McCabe index: 7 number of parameters: 5 id: 1368 unit: protected void makeStatisticUnmappedFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 534 end line: 553 size: 20 LOC McCabe index: 4 number of parameters: 4 id: 1369 unit: private static VariationType getVariationTypeForSimpleInDels() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 626 end line: 647 size: 20 LOC McCabe index: 7 number of parameters: 2 id: 1370 unit: public Variation loadVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 325 end line: 349 size: 20 LOC McCabe index: 2 number of parameters: 1 id: 1371 unit: public Variation loadVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 359 end line: 383 size: 20 LOC McCabe index: 3 number of parameters: 3 id: 1372 unit: public LineageTree createLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeManager.java start line: 85 end line: 104 size: 20 LOC McCabe index: 1 number of parameters: 1 id: 1373 unit: private void addFeaturesFromIteratorToIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 813 end line: 836 size: 20 LOC McCabe index: 9 number of parameters: 5 id: 1374 unit: private static void addDoc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 522 end line: 547 size: 20 LOC McCabe index: 3 number of parameters: 2 id: 1375 unit: public List readEntries() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneInfoManager.java start line: 128 end line: 147 size: 20 LOC McCabe index: 2 number of parameters: 1 id: 1376 unit: private HttpURLConnection createConnection() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/HttpDataManager.java start line: 209 end line: 230 size: 20 LOC McCabe index: 5 number of parameters: 1 id: 1377 unit: public List searchOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 87 end line: 106 size: 20 LOC McCabe index: 2 number of parameters: 1 id: 1378 unit: public List fetchVariationsOnRegion() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/EnsemblDataManager.java start line: 157 end line: 178 size: 20 LOC McCabe index: 3 number of parameters: 4 id: 1379 unit: private BlastTask buildBlastTask() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 298 end line: 317 size: 20 LOC McCabe index: 1 number of parameters: 3 id: 1380 unit: public void addFieldQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 193 end line: 212 size: 20 LOC McCabe index: 5 number of parameters: 2 id: 1381 unit: private SegFeature decode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/SegCodec.java start line: 88 end line: 116 size: 20 LOC McCabe index: 5 number of parameters: 1 id: 1382 unit: public boolean checkHistogramExists() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1184 end line: 1208 size: 20 LOC McCabe index: 3 number of parameters: 2 id: 1383 unit: private void setContentGc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 370 end line: 389 size: 20 LOC McCabe index: 8 number of parameters: 4 id: 1384 unit: private String parse() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 536 end line: 561 size: 20 LOC McCabe index: 4 number of parameters: 2 id: 1385 unit: private List mergeRegions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 585 end line: 604 size: 20 LOC McCabe index: 5 number of parameters: 1 id: 1386 unit: getBedTrack() file: client/client/dataServices/bed/bed-data-service.js start line: 11 end line: 32 size: 20 LOC McCabe index: 4 number of parameters: 1 id: 1387 unit: save() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 147 end line: 168 size: 20 LOC McCabe index: 4 number of parameters: 0 id: 1388 unit: mapTrack() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 268 end line: 287 size: 20 LOC McCabe index: 2 number of parameters: 2 id: 1389 unit: constructor() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 6 end line: 32 size: 20 LOC McCabe index: 1 number of parameters: 4 id: 1390 unit: export function getModelParametersDescription() file: client/client/app/shared/components/ngbLLM/utilities.js start line: 48 end line: 67 size: 20 LOC McCabe index: 8 number of parameters: 1 id: 1391 unit: startEdit() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 84 end line: 103 size: 20 LOC McCabe index: 5 number of parameters: 2 id: 1392 unit: didTypeChromosome() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 231 end line: 250 size: 20 LOC McCabe index: 6 number of parameters: 0 id: 1393 unit: constructor() file: client/client/app/shared/projectContext/index.js start line: 741 end line: 760 size: 20 LOC McCabe index: 3 number of parameters: 5 id: 1394 unit: async refreshDatasets() file: client/client/app/shared/projectContext/index.js start line: 959 end line: 978 size: 20 LOC McCabe index: 4 number of parameters: 0 id: 1395 unit: findDatasetByName() file: client/client/app/shared/projectContext/index.js start line: 1143 end line: 1162 size: 20 LOC McCabe index: 11 number of parameters: 1 id: 1396 unit: constructor() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 98 end line: 117 size: 20 LOC McCabe index: 1 number of parameters: 5 id: 1397 unit: apply() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 158 end line: 177 size: 20 LOC McCabe index: 6 number of parameters: 0 id: 1398 unit: apply() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 148 end line: 167 size: 20 LOC McCabe index: 6 number of parameters: 0 id: 1399 unit: setAlignment() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 145 end line: 164 size: 20 LOC McCabe index: 1 number of parameters: 1 id: 1400 unit: function findGeneByName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 16 end line: 35 size: 20 LOC McCabe index: 7 number of parameters: 2 id: 1401 unit: function findGeneByName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 22 end line: 41 size: 20 LOC McCabe index: 7 number of parameters: 2 id: 1402 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.controller.js start line: 84 end line: 103 size: 20 LOC McCabe index: 2 number of parameters: 0 id: 1403 unit: async searchPatents() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 320 end line: 339 size: 20 LOC McCabe index: 5 number of parameters: 0 id: 1404 unit: apply() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 155 end line: 174 size: 20 LOC McCabe index: 6 number of parameters: 0 id: 1405 unit: apply() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 154 end line: 173 size: 20 LOC McCabe index: 6 number of parameters: 0 id: 1406 unit: setTargetFromHomolog() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 896 end line: 915 size: 20 LOC McCabe index: 3 number of parameters: 1 id: 1407 unit: async getDataOnPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 522 end line: 541 size: 20 LOC McCabe index: 3 number of parameters: 1 id: 1408 unit: sortChanged() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResultTable/ngbOrthoParaResultTable.controller.js start line: 162 end line: 181 size: 20 LOC McCabe index: 3 number of parameters: 2 id: 1409 unit: sortChanged() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResultTable/ngbHomologeneResultTable.controller.js start line: 160 end line: 179 size: 20 LOC McCabe index: 3 number of parameters: 2 id: 1410 unit: async saveMetadata() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 84 end line: 103 size: 20 LOC McCabe index: 2 number of parameters: 0 id: 1411 unit: getNodePermissions() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.service.js start line: 39 end line: 58 size: 20 LOC McCabe index: 3 number of parameters: 1 id: 1412 unit: async reloadGenes() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 141 end line: 160 size: 20 LOC McCabe index: 3 number of parameters: 0 id: 1413 unit: constructor() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterRange/ngbVariantsFilterRange.controller.js start line: 14 end line: 33 size: 20 LOC McCabe index: 10 number of parameters: 1 id: 1414 unit: sortChanged() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.controller.js start line: 135 end line: 154 size: 20 LOC McCabe index: 3 number of parameters: 2 id: 1415 unit: async fetchChromosomes() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.service.js start line: 18 end line: 38 size: 20 LOC McCabe index: 4 number of parameters: 1 id: 1416 unit: constructor() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbMotifsColorPreference/ngbMotifsColorPreference.controller.js start line: 9 end line: 28 size: 20 LOC McCabe index: 1 number of parameters: 8 id: 1417 unit: applyDomStylesToSbgn() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 567 end line: 586 size: 20 LOC McCabe index: 2 number of parameters: 2 id: 1418 unit: coverageScaleSettingsChanged() file: client/client/modules/render/core/track/track.js start line: 449 end line: 468 size: 20 LOC McCabe index: 7 number of parameters: 2 id: 1419 unit: colorSettingsChanged() file: client/client/modules/render/core/track/track.js start line: 469 end line: 488 size: 20 LOC McCabe index: 7 number of parameters: 1 id: 1420 unit: this.disableEventListeners = function() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 265 end line: 284 size: 20 LOC McCabe index: 2 number of parameters: 0 id: 1421 unit: cacheUpdateParameters() file: client/client/modules/render/core/track/cachedTrack/cachedTrack.js start line: 46 end line: 65 size: 20 LOC McCabe index: 5 number of parameters: 1 id: 1422 unit: async updateCache() file: client/client/modules/render/core/track/cachedTrack/cachedTrack.js start line: 75 end line: 94 size: 20 LOC McCabe index: 1 number of parameters: 0 id: 1423 unit: function wrapStateMutatorFn() file: client/client/modules/render/core/menu/buildMenu.js start line: 54 end line: 73 size: 20 LOC McCabe index: 5 number of parameters: 7 id: 1424 unit: renderTick() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 94 end line: 118 size: 20 LOC McCabe index: 3 number of parameters: 3 id: 1425 unit: get alignmentsRowHeight() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 177 end line: 197 size: 20 LOC McCabe index: 5 number of parameters: 0 id: 1426 unit: _checkDownsampleIndicator() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 598 end line: 617 size: 20 LOC McCabe index: 7 number of parameters: 2 id: 1427 unit: function getPairOrientation() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 181 end line: 200 size: 20 LOC McCabe index: 11 number of parameters: 2 id: 1428 unit: function headerPerform() file: client/client/modules/render/tracks/common/menu/header.js start line: 1 end line: 40 size: 20 LOC McCabe index: 7 number of parameters: 2 id: 1429 unit: function reduce() file: client/client/modules/render/tracks/common/menu/header.js start line: 5 end line: 24 size: 20 LOC McCabe index: 7 number of parameters: 2 id: 1430 unit: analyzeBoundaries() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/interChromosomeFeatureRenderer.js start line: 7 end line: 26 size: 20 LOC McCabe index: 4 number of parameters: 2 id: 1431 unit: getRendererForFeature() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/featureRenderer.js start line: 64 end line: 83 size: 20 LOC McCabe index: 8 number of parameters: 1 id: 1432 unit: changeBrush() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 88 end line: 107 size: 20 LOC McCabe index: 2 number of parameters: 0 id: 1433 unit: _createInteractiveElement() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 161 end line: 191 size: 20 LOC McCabe index: 1 number of parameters: 1 id: 1434 unit: changeArea() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 193 end line: 212 size: 20 LOC McCabe index: 2 number of parameters: 0 id: 1435 unit: constructor() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 11 end line: 32 size: 20 LOC McCabe index: 1 number of parameters: 3 id: 1436 unit: render() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 297 end line: 316 size: 20 LOC McCabe index: 9 number of parameters: 0 id: 1437 unit: getLayoutInfo() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 389 end line: 408 size: 20 LOC McCabe index: 2 number of parameters: 2 id: 1438 unit: append() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry.js start line: 44 end line: 63 size: 20 LOC McCabe index: 8 number of parameters: 2 id: 1439 unit: function findGeneByName() file: client/client/modules/render/heatmap/navigation/index.js start line: 27 end line: 46 size: 20 LOC McCabe index: 7 number of parameters: 2 id: 1440 unit: constructor() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 67 end line: 90 size: 20 LOC McCabe index: 5 number of parameters: 2 id: 1441 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/SortHandler.java start line: 113 end line: 133 size: 19 LOC McCabe index: 3 number of parameters: 0 id: 1442 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/heatmap/AbstractHeatmapUpdateHandler.java start line: 66 end line: 84 size: 19 LOC McCabe index: 3 number of parameters: 0 id: 1443 unit: protected Project loadProjectByName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 786 end line: 804 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1444 unit: public static AbstractFeatureSorter getSorter() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/FeatureSorterFactory.java start line: 43 end line: 64 size: 19 LOC McCabe index: 5 number of parameters: 3 id: 1445 unit: public static void validateOptions() file: server/catgenome/src/main/java/com/epam/catgenome/util/BamUtil.java start line: 168 end line: 186 size: 19 LOC McCabe index: 7 number of parameters: 2 id: 1446 unit: private void spillBuffer() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 103 end line: 125 size: 19 LOC McCabe index: 3 number of parameters: 0 id: 1447 unit: private void lookupPrimaryKeys() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 184 end line: 208 size: 19 LOC McCabe index: 3 number of parameters: 3 id: 1448 unit: public Set extractData() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 511 end line: 542 size: 19 LOC McCabe index: 6 number of parameters: 1 id: 1449 unit: public void updateAclIdentity() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/aspect/AclAspect.java start line: 92 end line: 110 size: 19 LOC McCabe index: 7 number of parameters: 2 id: 1450 unit: public static int mergeParentMask() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 133 end line: 152 size: 19 LOC McCabe index: 8 number of parameters: 2 id: 1451 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 211 end line: 229 size: 19 LOC McCabe index: 1 number of parameters: 0 id: 1452 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamCoverageDao.java start line: 97 end line: 115 size: 19 LOC McCabe index: 2 number of parameters: 2 id: 1453 unit: private void createNotExistingGroups() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 292 end line: 314 size: 19 LOC McCabe index: 2 number of parameters: 2 id: 1454 unit: public List saveProjectNotes() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 378 end line: 396 size: 19 LOC McCabe index: 3 number of parameters: 2 id: 1455 unit: public void deleteProjectItem() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 458 end line: 482 size: 19 LOC McCabe index: 2 number of parameters: 2 id: 1456 unit: static LineageTreeNode parseLineageTreeNode() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeNodeDao.java start line: 144 end line: 162 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1457 unit: static LineageTree parseTree() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeDao.java start line: 158 end line: 176 size: 19 LOC McCabe index: 1 number of parameters: 1 id: 1458 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 263 end line: 283 size: 19 LOC McCabe index: 3 number of parameters: 1 id: 1459 unit: public void saveTaskParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 420 end line: 442 size: 19 LOC McCabe index: 3 number of parameters: 2 id: 1460 unit: static BlastDatabase parseDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastDatabaseDao.java start line: 132 end line: 150 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1461 unit: private void setMissingValuesOrder() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 742 end line: 760 size: 19 LOC McCabe index: 7 number of parameters: 3 id: 1462 unit: public void deleteFromIndexByFileId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 1040 end line: 1059 size: 19 LOC McCabe index: 7 number of parameters: 2 id: 1463 unit: private List simplifyVcfIndexEntries() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 297 end line: 317 size: 19 LOC McCabe index: 4 number of parameters: 6 id: 1464 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 269 end line: 287 size: 19 LOC McCabe index: 1 number of parameters: 1 id: 1465 unit: protected File saveChunkedFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/AbstractRESTController.java start line: 115 end line: 136 size: 19 LOC McCabe index: 4 number of parameters: 5 id: 1466 unit: public synchronized void executeTrackTask() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TaskExecutorService.java start line: 111 end line: 131 size: 19 LOC McCabe index: 4 number of parameters: 3 id: 1467 unit: public BedFile registerBed() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 163 end line: 182 size: 19 LOC McCabe index: 3 number of parameters: 1 id: 1468 unit: public OpenAIChatGPT35() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/OpenAIChatGPT35.java start line: 47 end line: 65 size: 19 LOC McCabe index: 2 number of parameters: 1 id: 1469 unit: public OpenAIChatGPT40() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/OpenAIChatGPT40.java start line: 23 end line: 41 size: 19 LOC McCabe index: 2 number of parameters: 1 id: 1470 unit: protected Track getWigFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigProcessor.java start line: 44 end line: 62 size: 19 LOC McCabe index: 3 number of parameters: 4 id: 1471 unit: public void renameFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemManager.java start line: 138 end line: 156 size: 19 LOC McCabe index: 5 number of parameters: 3 id: 1472 unit: private void changeMRnaByVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceReconstructionManager.java start line: 414 end line: 436 size: 19 LOC McCabe index: 6 number of parameters: 3 id: 1473 unit: protected void mapFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GffReader.java start line: 76 end line: 98 size: 19 LOC McCabe index: 4 number of parameters: 5 id: 1474 unit: protected void addUnmappedFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GtfReader.java start line: 155 end line: 179 size: 19 LOC McCabe index: 3 number of parameters: 5 id: 1475 unit: private boolean setTrackBounds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneTrackManager.java start line: 258 end line: 281 size: 19 LOC McCabe index: 5 number of parameters: 3 id: 1476 unit: private void addAttributesActivity() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneActivityService.java start line: 129 end line: 147 size: 19 LOC McCabe index: 1 number of parameters: 3 id: 1477 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3BaseData.java start line: 101 end line: 122 size: 19 LOC McCabe index: 3 number of parameters: 0 id: 1478 unit: public Track readVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 113 end line: 131 size: 19 LOC McCabe index: 3 number of parameters: 7 id: 1479 unit: private IndexSearchResult getVcfSearchResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 389 end line: 407 size: 19 LOC McCabe index: 3 number of parameters: 2 id: 1480 unit: public IndexSearchResult getFullGeneSearchResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 424 end line: 442 size: 19 LOC McCabe index: 2 number of parameters: 2 id: 1481 unit: public void makeIndexForBedReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 592 end line: 610 size: 19 LOC McCabe index: 2 number of parameters: 3 id: 1482 unit: public List getDrugPatents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/PatentsManager.java start line: 150 end line: 168 size: 19 LOC McCabe index: 3 number of parameters: 1 id: 1483 unit: public String searchById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 166 end line: 187 size: 19 LOC McCabe index: 4 number of parameters: 5 id: 1484 unit: public String getResultFromURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 367 end line: 385 size: 19 LOC McCabe index: 7 number of parameters: 1 id: 1485 unit: private Dasalignment parseToDasalignment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbDataManager.java start line: 108 end line: 130 size: 19 LOC McCabe index: 1 number of parameters: 1 id: 1486 unit: public List search() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 102 end line: 120 size: 19 LOC McCabe index: 4 number of parameters: 2 id: 1487 unit: public List loadHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1153 end line: 1175 size: 19 LOC McCabe index: 2 number of parameters: 2 id: 1488 unit: public void makeMafTempIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1771 end line: 1794 size: 19 LOC McCabe index: 3 number of parameters: 2 id: 1489 unit: private Heatmap getHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 264 end line: 282 size: 19 LOC McCabe index: 1 number of parameters: 2 id: 1490 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/VcfField.java start line: 56 end line: 74 size: 19 LOC McCabe index: 1 number of parameters: 0 id: 1491 unit: public MetadataVO upsert() file: server/catgenome/src/main/java/com/epam/catgenome/manager/metadata/MetadataManager.java start line: 56 end line: 78 size: 19 LOC McCabe index: 3 number of parameters: 1 id: 1492 unit: public Reference delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 155 end line: 174 size: 19 LOC McCabe index: 2 number of parameters: 1 id: 1493 unit: public Track fillTrackWithMotifSearch() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 111 end line: 129 size: 19 LOC McCabe index: 1 number of parameters: 3 id: 1494 unit: function _getFieldsFromCondition() file: client/client/dataServices/utils/highlight-condition-service.js start line: 237 end line: 255 size: 19 LOC McCabe index: 3 number of parameters: 1 id: 1495 unit: putGeneInfoEdition() file: client/client/dataServices/gene/gene-data-service.js start line: 174 end line: 192 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1496 unit: loadGeneTrack() file: client/client/dataServices/gene/cached-gene-data-service.js start line: 72 end line: 90 size: 19 LOC McCabe index: 6 number of parameters: 3 id: 1497 unit: setTrackIsSelected() file: client/client/app/shared/selectionContext/index.js start line: 85 end line: 103 size: 19 LOC McCabe index: 7 number of parameters: 3 id: 1498 unit: setTracksAreSelected() file: client/client/app/shared/selectionContext/index.js start line: 112 end line: 130 size: 19 LOC McCabe index: 7 number of parameters: 3 id: 1499 unit: close() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.builder.js start line: 77 end line: 95 size: 19 LOC McCabe index: 5 number of parameters: 1 id: 1500 unit: function adjustPosition() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.directive.js start line: 47 end line: 68 size: 19 LOC McCabe index: 4 number of parameters: 3 id: 1501 unit: _openFileDialog() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFile.controller.js start line: 34 end line: 62 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1502 unit: _focusInCallback() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 71 end line: 94 size: 19 LOC McCabe index: 7 number of parameters: 0 id: 1503 unit: export default function run() file: client/client/app/shared/components/ngbLLM/ngbLLM.dialog.run.js start line: 3 end line: 65 size: 19 LOC McCabe index: 4 number of parameters: 3 id: 1504 unit: _removeItemFromLayout() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.service.js start line: 141 end line: 162 size: 19 LOC McCabe index: 8 number of parameters: 2 id: 1505 unit: const next = function() file: client/client/app/shared/components/ngbGoldenLayout/internal/goldenLayout.js start line: 55 end line: 78 size: 19 LOC McCabe index: 8 number of parameters: 2 id: 1506 unit: _createCommunicationBetweenWindows() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 370 end line: 395 size: 19 LOC McCabe index: 4 number of parameters: 0 id: 1507 unit: async preAnalyze() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 81 end line: 99 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1508 unit: onHeatmapSourceChanged() file: client/client/app/shared/components/ngbHeatmap/ngbHeatmap.controller.js start line: 44 end line: 62 size: 19 LOC McCabe index: 4 number of parameters: 0 id: 1509 unit: buildData() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantDensityDiagram/ngbVariantDensityDiagram.controller.js start line: 100 end line: 118 size: 19 LOC McCabe index: 5 number of parameters: 1 id: 1510 unit: async changeIdentificationState() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 170 end line: 188 size: 19 LOC McCabe index: 5 number of parameters: 1 id: 1511 unit: didClickOnItem() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 114 end line: 132 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1512 unit: didClickOnItem() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbDiseasesTargetsFilterList.controller.js start line: 120 end line: 138 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1513 unit: async searchDisease() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 89 end line: 107 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1514 unit: getDiseaseData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 109 end line: 127 size: 19 LOC McCabe index: 1 number of parameters: 1 id: 1515 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesTableFilter.controller.js start line: 10 end line: 28 size: 19 LOC McCabe index: 4 number of parameters: 0 id: 1516 unit: didClickOnItem() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 104 end line: 122 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1517 unit: didClickOnItem() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 120 end line: 138 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1518 unit: async getHomologs() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 345 end line: 363 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1519 unit: async getHomologene() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 365 end line: 383 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1520 unit: didClickOnItem() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 111 end line: 129 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1521 unit: async sortChanged() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 284 end line: 302 size: 19 LOC McCabe index: 4 number of parameters: 2 id: 1522 unit: function getParasiteGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/utilities/autocompleteFunctions.js start line: 72 end line: 90 size: 19 LOC McCabe index: 2 number of parameters: 3 id: 1523 unit: async getIsChangeAllowed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 338 end line: 356 size: 19 LOC McCabe index: 5 number of parameters: 1 id: 1524 unit: identifyTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 94 end line: 112 size: 19 LOC McCabe index: 5 number of parameters: 0 id: 1525 unit: isSaveDisabled() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 114 end line: 132 size: 19 LOC McCabe index: 13 number of parameters: 0 id: 1526 unit: didClickOnItem() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 122 end line: 140 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1527 unit: launchTargetIdentification() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 154 end line: 172 size: 19 LOC McCabe index: 3 number of parameters: 1 id: 1528 unit: async getDataDown() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 163 end line: 181 size: 19 LOC McCabe index: 3 number of parameters: 0 id: 1529 unit: async getDataUp() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 183 end line: 201 size: 19 LOC McCabe index: 2 number of parameters: 0 id: 1530 unit: changeState() file: client/client/app/components/ngbHomologsPanel/ngbHomologsPanel.controller.js start line: 32 end line: 50 size: 19 LOC McCabe index: 6 number of parameters: 1 id: 1531 unit: const fn = function() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 166 end line: 184 size: 19 LOC McCabe index: 5 number of parameters: 1 id: 1532 unit: export function sortByNameAsc() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 188 end line: 206 size: 19 LOC McCabe index: 8 number of parameters: 2 id: 1533 unit: export function sortByNameDesc() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 208 end line: 226 size: 19 LOC McCabe index: 8 number of parameters: 2 id: 1534 unit: async updateSelectionFromState() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 91 end line: 109 size: 19 LOC McCabe index: 6 number of parameters: 1 id: 1535 unit: didClickOnItem() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbGenesFilterList.controller.js start line: 128 end line: 146 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1536 unit: openMolecularView() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableContextMenu/ngbGenesTableContextMenu.controller.js start line: 86 end line: 104 size: 19 LOC McCabe index: 2 number of parameters: 1 id: 1537 unit: miewPanelActiveChanged() file: client/client/app/components/ngbMolecularViewer/ngbMiew/ngbMiew.controller.js start line: 47 end line: 65 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1538 unit: didClickOnItem() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterList/ngbVariantsFilterList.controller.js start line: 132 end line: 150 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1539 unit: didClickOnItem() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbCoverageFilterList.controller.js start line: 105 end line: 123 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1540 unit: async selectCoverageIndex() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 98 end line: 116 size: 19 LOC McCabe index: 2 number of parameters: 0 id: 1541 unit: constructor() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbBedColorPreference/ngbBedColorPreference.controller.js start line: 9 end line: 27 size: 19 LOC McCabe index: 1 number of parameters: 7 id: 1542 unit: correctHiddenItems() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackSettings.controller.js start line: 78 end line: 96 size: 19 LOC McCabe index: 5 number of parameters: 0 id: 1543 unit: trackSelectionChanged() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 416 end line: 434 size: 19 LOC McCabe index: 7 number of parameters: 1 id: 1544 unit: fn: async function() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.events.js start line: 385 end line: 404 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1545 unit: changeState() file: client/client/app/components/ngbPathways/ngbPathwaysPanel.controller.js start line: 42 end line: 60 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1546 unit: rowClick() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.controller.js start line: 124 end line: 142 size: 19 LOC McCabe index: 4 number of parameters: 2 id: 1547 unit: didClickOnItem() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysFilterList/ngbInternalPathwaysFilterList.controller.js start line: 110 end line: 128 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1548 unit: $onChanges() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 151 end line: 169 size: 19 LOC McCabe index: 11 number of parameters: 1 id: 1549 unit: manualAnnotation() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 505 end line: 523 size: 19 LOC McCabe index: 6 number of parameters: 2 id: 1550 unit: recoverLocalState() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 273 end line: 291 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1551 unit: applyOptions() file: client/client/app/components/ngbStrainLineage/ngbCytoscape/ngbCytoscape.controller.js start line: 270 end line: 288 size: 19 LOC McCabe index: 4 number of parameters: 2 id: 1552 unit: getReference() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoMain/ngbFeatureInfoMain.controller.js start line: 80 end line: 99 size: 19 LOC McCabe index: 4 number of parameters: 4 id: 1553 unit: updateFeatureInfo() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 135 end line: 153 size: 19 LOC McCabe index: 7 number of parameters: 1 id: 1554 unit: export default function getRenderer() file: client/client/modules/render/core/configuration/renderManager.js start line: 8 end line: 26 size: 19 LOC McCabe index: 3 number of parameters: 3 id: 1555 unit: animationTrigger() file: client/client/modules/render/core/track/track.js start line: 151 end line: 169 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1556 unit: onDrag() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 197 end line: 215 size: 19 LOC McCabe index: 6 number of parameters: 2 id: 1557 unit: analyzeBoundaries() file: client/client/modules/render/tracks/bed/internal/renderer/features/drawing/bedItemFeatureRenderer.js start line: 14 end line: 32 size: 19 LOC McCabe index: 7 number of parameters: 2 id: 1558 unit: async updateCache() file: client/client/modules/render/tracks/wig/index.js start line: 94 end line: 112 size: 19 LOC McCabe index: 5 number of parameters: 0 id: 1559 unit: _getExtremumValues() file: client/client/modules/render/tracks/wig/wigTransformer.js start line: 24 end line: 46 size: 19 LOC McCabe index: 6 number of parameters: 2 id: 1560 unit: _renderGroupAutoScaleIndicator() file: client/client/modules/render/tracks/wig/wigArea.js start line: 88 end line: 106 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1561 unit: _initReadColorModeBisulfiteConversion() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 172 end line: 190 size: 19 LOC McCabe index: 9 number of parameters: 1 id: 1562 unit: analyzeBoundaries() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/transcriptFeatureRenderer.js start line: 32 end line: 54 size: 19 LOC McCabe index: 3 number of parameters: 2 id: 1563 unit: constructor() file: client/client/modules/render/tracks/gene/internal/renderer/geneRenderer.js start line: 28 end line: 46 size: 19 LOC McCabe index: 1 number of parameters: 3 id: 1564 unit: buildComponent() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 97 end line: 116 size: 19 LOC McCabe index: 4 number of parameters: 2 id: 1565 unit: buildMultipleNucleotideRegions() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 271 end line: 289 size: 19 LOC McCabe index: 7 number of parameters: 2 id: 1566 unit: constructor() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/vcfRenderer.js start line: 12 end line: 31 size: 19 LOC McCabe index: 1 number of parameters: 2 id: 1567 unit: function mergeVariantInfo() file: client/client/modules/render/tracks/vcf/internal/data/multi-sample-vcf-transformer.js start line: 4 end line: 22 size: 19 LOC McCabe index: 6 number of parameters: 2 id: 1568 unit: constructor() file: client/client/modules/render/tracks/vcf/index.js start line: 75 end line: 97 size: 19 LOC McCabe index: 1 number of parameters: 1 id: 1569 unit: get renderer() file: client/client/modules/render/tracks/vcf/index.js start line: 200 end line: 218 size: 19 LOC McCabe index: 4 number of parameters: 0 id: 1570 unit: static partitionWithComparator() file: client/client/modules/render/utilities/sorting.js start line: 75 end line: 93 size: 19 LOC McCabe index: 7 number of parameters: 4 id: 1571 unit: getSessionFlags() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/binary-tree-graphics.js start line: 149 end line: 167 size: 19 LOC McCabe index: 2 number of parameters: 1 id: 1572 unit: renderMask() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 363 end line: 381 size: 19 LOC McCabe index: 2 number of parameters: 0 id: 1573 unit: constructor() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 14 end line: 48 size: 19 LOC McCabe index: 2 number of parameters: 3 id: 1574 unit: function getBase() file: client/client/modules/render/heatmap/renderer/color-scheme-renderer/index.js start line: 9 end line: 27 size: 19 LOC McCabe index: 5 number of parameters: 1 id: 1575 unit: constructor() file: client/client/modules/render/heatmap/renderer/color-scheme-renderer/index.js start line: 40 end line: 66 size: 19 LOC McCabe index: 2 number of parameters: 2 id: 1576 unit: attachDispatcher() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 162 end line: 180 size: 19 LOC McCabe index: 1 number of parameters: 1 id: 1577 unit: getDomainColor() file: client/client/modules/render/variant-render/renderers/drawing/utilities/domain-colors-manager.js start line: 38 end line: 56 size: 19 LOC McCabe index: 4 number of parameters: 1 id: 1578 unit: _renderReferenceLabel() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 302 end line: 321 size: 19 LOC McCabe index: 2 number of parameters: 2 id: 1579 unit: _renderAltLabel() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 323 end line: 342 size: 19 LOC McCabe index: 2 number of parameters: 2 id: 1580 unit: function getOptionsItems() file: export-templates/target-identification/src/common/select/index.tsx start line: 132 end line: 150 size: 19 LOC McCabe index: 2 number of parameters: 3 id: 1581 unit: export function buildSorter() file: export-templates/target-identification/src/model/sorted-data.ts start line: 40 end line: 58 size: 19 LOC McCabe index: 6 number of parameters: 1 id: 1582 unit: public Properties loadServerConfiguration() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/ConfigurationLoader.java start line: 111 end line: 128 size: 18 LOC McCabe index: 6 number of parameters: 1 id: 1583 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/dataset/DatasetDescriptionDeletionHandler.java start line: 66 end line: 86 size: 18 LOC McCabe index: 3 number of parameters: 0 id: 1584 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/species/SpeciesRegistrationHandler.java start line: 65 end line: 85 size: 18 LOC McCabe index: 5 number of parameters: 2 id: 1585 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/heatmap/HeatmapRegistrationHandler.java start line: 55 end line: 72 size: 18 LOC McCabe index: 2 number of parameters: 2 id: 1586 unit: private BiologicalDataItem loadFileByBioID() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 767 end line: 784 size: 18 LOC McCabe index: 4 number of parameters: 1 id: 1587 unit: public FilterChainProxy samlFilter() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 558 end line: 575 size: 18 LOC McCabe index: 1 number of parameters: 0 id: 1588 unit: public Motif next() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/MotifSearchIterator.java start line: 108 end line: 125 size: 18 LOC McCabe index: 5 number of parameters: 0 id: 1589 unit: String writeHeader() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/BedSorter.java start line: 49 end line: 70 size: 18 LOC McCabe index: 7 number of parameters: 2 id: 1590 unit: private void advanceBlock() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 484 end line: 504 size: 18 LOC McCabe index: 6 number of parameters: 0 id: 1591 unit: public boolean projectCanBeMoved() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 183 end line: 202 size: 18 LOC McCabe index: 5 number of parameters: 2 id: 1592 unit: public static Long getBioDataItemId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 151 end line: 168 size: 18 LOC McCabe index: 6 number of parameters: 1 id: 1593 unit: public void filterLeaves() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 84 end line: 103 size: 18 LOC McCabe index: 7 number of parameters: 1 id: 1594 unit: public static String nibByteToString() file: server/catgenome/src/main/java/com/epam/catgenome/entity/nucleotid/FormatCoder.java start line: 50 end line: 67 size: 18 LOC McCabe index: 4 number of parameters: 1 id: 1595 unit: public void addProjectItem() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 315 end line: 337 size: 18 LOC McCabe index: 2 number of parameters: 2 id: 1596 unit: public void writeLuceneIndexForFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 241 end line: 260 size: 18 LOC McCabe index: 3 number of parameters: 3 id: 1597 unit: private void deleteDocumentByTypeAndId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 1119 end line: 1138 size: 18 LOC McCabe index: 2 number of parameters: 3 id: 1598 unit: protected void addExtraFeatureFields() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/GeneDocumentBuilder.java start line: 57 end line: 74 size: 18 LOC McCabe index: 1 number of parameters: 2 id: 1599 unit: private void addFeaturesFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafManager.java start line: 280 end line: 299 size: 18 LOC McCabe index: 4 number of parameters: 4 id: 1600 unit: public static void fillBlocks() file: server/catgenome/src/main/java/com/epam/catgenome/manager/TrackHelper.java start line: 238 end line: 255 size: 18 LOC McCabe index: 3 number of parameters: 3 id: 1601 unit: protected String parseName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 307 end line: 325 size: 18 LOC McCabe index: 5 number of parameters: 3 id: 1602 unit: public Read loadRead() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamManager.java start line: 223 end line: 242 size: 18 LOC McCabe index: 4 number of parameters: 3 id: 1603 unit: private GeneFilterForm buildFilterForm() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 679 end line: 698 size: 18 LOC McCabe index: 3 number of parameters: 4 id: 1604 unit: public static ProteinSequence constructProteinString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 279 end line: 296 size: 18 LOC McCabe index: 4 number of parameters: 2 id: 1605 unit: private static String getTranscriptName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 370 end line: 388 size: 18 LOC McCabe index: 7 number of parameters: 2 id: 1606 unit: private List getTranscriptFromDB() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneTrackManager.java start line: 283 end line: 300 size: 18 LOC McCabe index: 4 number of parameters: 1 id: 1607 unit: private void processLastFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 284 end line: 304 size: 18 LOC McCabe index: 8 number of parameters: 5 id: 1608 unit: private Map parseAlignment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 962 end line: 979 size: 18 LOC McCabe index: 4 number of parameters: 1 id: 1609 unit: public void renameProject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 378 end line: 395 size: 18 LOC McCabe index: 5 number of parameters: 3 id: 1610 unit: private void attachMetadataToTopProject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 614 end line: 632 size: 18 LOC McCabe index: 2 number of parameters: 2 id: 1611 unit: public static Variation createVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 158 end line: 183 size: 18 LOC McCabe index: 3 number of parameters: 3 id: 1612 unit: private static VariationType getVariationTypeForComplexInDels() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 650 end line: 667 size: 18 LOC McCabe index: 7 number of parameters: 1 id: 1613 unit: private Variation getNextVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 188 end line: 205 size: 18 LOC McCabe index: 5 number of parameters: 5 id: 1614 unit: private List getAllelesGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 505 end line: 522 size: 18 LOC McCabe index: 4 number of parameters: 3 id: 1615 unit: public Track loadVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 263 end line: 283 size: 18 LOC McCabe index: 2 number of parameters: 4 id: 1616 unit: public Track loadVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 296 end line: 317 size: 18 LOC McCabe index: 3 number of parameters: 6 id: 1617 unit: public void processGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 668 end line: 688 size: 18 LOC McCabe index: 3 number of parameters: 3 id: 1618 unit: public SearchResult getDrugPatents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/PatentsManager.java start line: 130 end line: 148 size: 18 LOC McCabe index: 2 number of parameters: 1 id: 1619 unit: public String getResultFromURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 327 end line: 344 size: 18 LOC McCabe index: 7 number of parameters: 2 id: 1620 unit: public String getResultFromHttp() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 347 end line: 364 size: 18 LOC McCabe index: 7 number of parameters: 2 id: 1621 unit: public Taxonomy searchOrganismById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 109 end line: 126 size: 18 LOC McCabe index: 4 number of parameters: 1 id: 1622 unit: private static void addDoc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 271 end line: 288 size: 18 LOC McCabe index: 4 number of parameters: 2 id: 1623 unit: private void setGeneIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homolog/HomologManager.java start line: 331 end line: 348 size: 18 LOC McCabe index: 2 number of parameters: 1 id: 1624 unit: private String parseAbstract() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/PubMedService.java start line: 159 end line: 176 size: 18 LOC McCabe index: 3 number of parameters: 1 id: 1625 unit: public Uniprot fetchUniprotEntry() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/UniprotDataManager.java start line: 64 end line: 88 size: 18 LOC McCabe index: 3 number of parameters: 1 id: 1626 unit: private BlastRequest buildBlastRequest() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 320 end line: 337 size: 18 LOC McCabe index: 3 number of parameters: 2 id: 1627 unit: public void makeSegIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1658 end line: 1679 size: 18 LOC McCabe index: 1 number of parameters: 1 id: 1628 unit: public File writeToBedGraphFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1912 end line: 1930 size: 18 LOC McCabe index: 2 number of parameters: 2 id: 1629 unit: private Map readLabelAnnotation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 385 end line: 402 size: 18 LOC McCabe index: 4 number of parameters: 1 id: 1630 unit: private String getProteinSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/sequence/SequencesManager.java start line: 231 end line: 248 size: 18 LOC McCabe index: 1 number of parameters: 2 id: 1631 unit: public List getNucleotidesFromNibFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 143 end line: 165 size: 18 LOC McCabe index: 1 number of parameters: 4 id: 1632 unit: public List getNucleotidesFromNibGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 176 end line: 195 size: 18 LOC McCabe index: 3 number of parameters: 3 id: 1633 unit: private void add2Heap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataWriter.java start line: 172 end line: 189 size: 18 LOC McCabe index: 4 number of parameters: 2 id: 1634 unit: private void setIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 615 end line: 632 size: 18 LOC McCabe index: 3 number of parameters: 1 id: 1635 unit: public MotifSearchResult search() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 135 end line: 152 size: 18 LOC McCabe index: 5 number of parameters: 2 id: 1636 unit: handleAuthenticationError() file: client/client/dataServices/data-service.js start line: 165 end line: 183 size: 18 LOC McCabe index: 5 number of parameters: 0 id: 1637 unit: getExonsByViewport() file: client/client/dataServices/gene/gene-data-service.js start line: 122 end line: 139 size: 18 LOC McCabe index: 2 number of parameters: 1 id: 1638 unit: getExonsByRange() file: client/client/dataServices/gene/gene-data-service.js start line: 141 end line: 158 size: 18 LOC McCabe index: 2 number of parameters: 1 id: 1639 unit: deleteBamCoverage() file: client/client/app/shared/bamCoverageContext/index.js start line: 74 end line: 91 size: 18 LOC McCabe index: 5 number of parameters: 1 id: 1640 unit: export function parseObject() file: client/client/app/shared/utils/Object.js start line: 30 end line: 50 size: 18 LOC McCabe index: 6 number of parameters: 3 id: 1641 unit: delete() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 170 end line: 188 size: 18 LOC McCabe index: 2 number of parameters: 0 id: 1642 unit: delete() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 203 end line: 220 size: 18 LOC McCabe index: 3 number of parameters: 0 id: 1643 unit: constructor() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromUrl/ngbOpenFileFromUrl.controller.js start line: 13 end line: 30 size: 18 LOC McCabe index: 8 number of parameters: 2 id: 1644 unit: _focusOutCallback() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 96 end line: 117 size: 18 LOC McCabe index: 4 number of parameters: 0 id: 1645 unit: function getViewportByPosition() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/parse-coordinates.js start line: 101 end line: 118 size: 18 LOC McCabe index: 5 number of parameters: 2 id: 1646 unit: get vcfColumns() file: client/client/app/shared/projectContext/index.js start line: 422 end line: 439 size: 18 LOC McCabe index: 7 number of parameters: 0 id: 1647 unit: static analyzeTrackSettings() file: client/client/app/shared/projectContext/index.js start line: 480 end line: 497 size: 18 LOC McCabe index: 7 number of parameters: 1 id: 1648 unit: setTrackState() file: client/client/app/shared/projectContext/index.js start line: 534 end line: 551 size: 18 LOC McCabe index: 5 number of parameters: 1 id: 1649 unit: _getVcfCallbacks() file: client/client/app/shared/projectContext/index.js start line: 918 end line: 949 size: 18 LOC McCabe index: 1 number of parameters: 0 id: 1650 unit: downloadVcfTable() file: client/client/app/shared/projectContext/index.js start line: 2500 end line: 2517 size: 18 LOC McCabe index: 2 number of parameters: 3 id: 1651 unit: buildData() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantTypeDiagram/ngbVariantTypeDiagram.controller.js start line: 81 end line: 99 size: 18 LOC McCabe index: 4 number of parameters: 1 id: 1652 unit: async saveIdentification() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 216 end line: 233 size: 18 LOC McCabe index: 2 number of parameters: 1 id: 1653 unit: exportResults() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 173 end line: 190 size: 18 LOC McCabe index: 8 number of parameters: 1 id: 1654 unit: async onClickTMAP() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 327 end line: 344 size: 18 LOC McCabe index: 6 number of parameters: 0 id: 1655 unit: async loadData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 181 end line: 198 size: 18 LOC McCabe index: 3 number of parameters: 0 id: 1656 unit: async loadData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 199 end line: 216 size: 18 LOC McCabe index: 3 number of parameters: 0 id: 1657 unit: async setSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 125 end line: 142 size: 18 LOC McCabe index: 4 number of parameters: 0 id: 1658 unit: async onClickTMAP() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 109 end line: 126 size: 18 LOC McCabe index: 6 number of parameters: 0 id: 1659 unit: openPermissions() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetContextMenu.controller.js start line: 37 end line: 54 size: 18 LOC McCabe index: 2 number of parameters: 1 id: 1660 unit: getPermissions() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.service.js start line: 25 end line: 42 size: 18 LOC McCabe index: 3 number of parameters: 1 id: 1661 unit: getChangedFields() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 754 end line: 771 size: 18 LOC McCabe index: 4 number of parameters: 0 id: 1662 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesTableFilter.controller.js start line: 20 end line: 37 size: 18 LOC McCabe index: 4 number of parameters: 0 id: 1663 unit: get blatColumns() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.service.js start line: 27 end line: 45 size: 18 LOC McCabe index: 6 number of parameters: 0 id: 1664 unit: constructor() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbFilterList.elements.js start line: 22 end line: 39 size: 18 LOC McCabe index: 4 number of parameters: 2 id: 1665 unit: function isValidSequenceRegExpString() file: client/client/app/components/ngbMotifsPanel/motif.sequence.directive.js start line: 8 end line: 26 size: 18 LOC McCabe index: 4 number of parameters: 1 id: 1666 unit: $onInit() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.controller.js start line: 95 end line: 112 size: 18 LOC McCabe index: 1 number of parameters: 0 id: 1667 unit: openPermissions() file: client/client/app/components/ngbDataSets/internal/ngbDataSetContextMenu/ngbDataSetContextMenu.controller.js start line: 41 end line: 58 size: 18 LOC McCabe index: 2 number of parameters: 1 id: 1668 unit: openMetadataPopup() file: client/client/app/components/ngbDataSets/internal/ngbDataSetContextMenu/ngbDataSetContextMenu.controller.js start line: 88 end line: 105 size: 18 LOC McCabe index: 2 number of parameters: 1 id: 1669 unit: checkSelectionAvailable() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 195 end line: 213 size: 18 LOC McCabe index: 7 number of parameters: 2 id: 1670 unit: refreshGenesFilterEmptyStatus() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 507 end line: 524 size: 18 LOC McCabe index: 4 number of parameters: 0 id: 1671 unit: searchFinished() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbGenesFilterList.controller.js start line: 60 end line: 77 size: 18 LOC McCabe index: 6 number of parameters: 2 id: 1672 unit: searchFinished() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterList/ngbVariantsFilterList.controller.js start line: 62 end line: 79 size: 18 LOC McCabe index: 6 number of parameters: 2 id: 1673 unit: const mapNameToField = function() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 159 end line: 176 size: 18 LOC McCabe index: 7 number of parameters: 1 id: 1674 unit: async initialize() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.controller.js start line: 66 end line: 83 size: 18 LOC McCabe index: 1 number of parameters: 0 id: 1675 unit: set vcfFileId() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 162 end line: 179 size: 18 LOC McCabe index: 4 number of parameters: 1 id: 1676 unit: initState() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.service.js start line: 223 end line: 240 size: 18 LOC McCabe index: 6 number of parameters: 1 id: 1677 unit: searchFinished() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysFilterList/ngbInternalPathwaysFilterList.controller.js start line: 42 end line: 59 size: 18 LOC McCabe index: 6 number of parameters: 2 id: 1678 unit: _transformNcbiDataToSummaryProperties() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfo.service.js start line: 25 end line: 44 size: 18 LOC McCabe index: 4 number of parameters: 1 id: 1679 unit: sendNewGeneInfo() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 155 end line: 172 size: 18 LOC McCabe index: 1 number of parameters: 3 id: 1680 unit: constructor() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 32 end line: 49 size: 18 LOC McCabe index: 2 number of parameters: 4 id: 1681 unit: export default function tooltipFactory() file: client/client/modules/render/core/track/tooltip.js start line: 36 end line: 131 size: 18 LOC McCabe index: 1 number of parameters: 1 id: 1682 unit: static recoverConfig() file: client/client/modules/render/core/track/baseTrack.js start line: 78 end line: 95 size: 18 LOC McCabe index: 10 number of parameters: 2 id: 1683 unit: constructor() file: client/client/modules/render/tracks/wig/wigArea.js start line: 18 end line: 35 size: 18 LOC McCabe index: 2 number of parameters: 3 id: 1684 unit: static getRenderEntryVerticalPositioning() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 90 end line: 107 size: 18 LOC McCabe index: 5 number of parameters: 1 id: 1685 unit: export function dumpInfo() file: client/client/modules/render/tracks/bam/internal/internalUtilities.js start line: 9 end line: 26 size: 18 LOC McCabe index: 8 number of parameters: 2 id: 1686 unit: rebuild() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 157 end line: 174 size: 18 LOC McCabe index: 3 number of parameters: 3 id: 1687 unit: drawDragNotches() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 255 end line: 272 size: 18 LOC McCabe index: 2 number of parameters: 3 id: 1688 unit: render() file: client/client/modules/render/tracks/ruler/index.js start line: 37 end line: 54 size: 18 LOC McCabe index: 8 number of parameters: 1 id: 1689 unit: get dragAndDropZone() file: client/client/modules/render/tracks/featureCounts/internal/renderer/bar-chart/bar-chart-source-renderer.js start line: 57 end line: 74 size: 18 LOC McCabe index: 2 number of parameters: 0 id: 1690 unit: checkPosition() file: client/client/modules/render/tracks/blast/renderer.js start line: 52 end line: 69 size: 18 LOC McCabe index: 8 number of parameters: 3 id: 1691 unit: checkPosition() file: client/client/modules/render/tracks/comparison/renderer.js start line: 47 end line: 64 size: 18 LOC McCabe index: 8 number of parameters: 3 id: 1692 unit: const getAminoAcidsFn = function() file: client/client/modules/render/tracks/reference/referenceTransformer.js start line: 73 end line: 91 size: 18 LOC McCabe index: 7 number of parameters: 3 id: 1693 unit: static _rectanglesConflict() file: client/client/modules/render/utilities/zonesManager.js start line: 407 end line: 424 size: 18 LOC McCabe index: 2 number of parameters: 4 id: 1694 unit: destroy() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/index.js start line: 38 end line: 55 size: 18 LOC McCabe index: 4 number of parameters: 0 id: 1695 unit: hide() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/binary-tree-graphics.js start line: 178 end line: 196 size: 18 LOC McCabe index: 6 number of parameters: 1 id: 1696 unit: renderBackground() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 455 end line: 472 size: 18 LOC McCabe index: 3 number of parameters: 0 id: 1697 unit: preservePositionOnScale() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 178 end line: 195 size: 18 LOC McCabe index: 3 number of parameters: 2 id: 1698 unit: initialize() file: client/client/modules/render/heatmap/viewport/index.js start line: 199 end line: 216 size: 18 LOC McCabe index: 6 number of parameters: 1 id: 1699 unit: constructor() file: client/client/modules/render/heatmap/index.js start line: 27 end line: 44 size: 18 LOC McCabe index: 3 number of parameters: 5 id: 1700 unit: ensureDataRenderer() file: client/client/modules/render/heatmap/heatmap-view.js start line: 349 end line: 370 size: 18 LOC McCabe index: 4 number of parameters: 0 id: 1701 unit: resize() file: client/client/modules/render/heatmap/heatmap-view.js start line: 454 end line: 471 size: 18 LOC McCabe index: 5 number of parameters: 2 id: 1702 unit: copy() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 499 end line: 516 size: 18 LOC McCabe index: 1 number of parameters: 1 id: 1703 unit: _addInteractionArea() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 572 end line: 589 size: 18 LOC McCabe index: 2 number of parameters: 1 id: 1704 unit: constructor() file: client/client/modules/render/variant-render/variant-renderer.js start line: 23 end line: 43 size: 18 LOC McCabe index: 1 number of parameters: 3 id: 1705 unit: function Link() file: export-templates/target-identification/src/common/display-value/index.tsx start line: 14 end line: 31 size: 18 LOC McCabe index: 1 number of parameters: 1 id: 1706 unit: private static CloseableHttpClient getClient() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/request/RequestManager.java start line: 60 end line: 79 size: 17 LOC McCabe index: 3 number of parameters: 1 id: 1707 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/FileRegistrationHandler.java start line: 137 end line: 157 size: 17 LOC McCabe index: 6 number of parameters: 2 id: 1708 unit: protected void checkAndPrintResultForList() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 511 end line: 527 size: 17 LOC McCabe index: 5 number of parameters: 4 id: 1709 unit: private S3Client() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 65 end line: 81 size: 17 LOC McCabe index: 4 number of parameters: 3 id: 1710 unit: public TribbleIndexedFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 115 end line: 131 size: 17 LOC McCabe index: 5 number of parameters: 5 id: 1711 unit: public MutableAcl getOrCreateObjectIdentity() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 87 end line: 103 size: 17 LOC McCabe index: 4 number of parameters: 1 id: 1712 unit: public void extendMapFilter() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 344 end line: 360 size: 17 LOC McCabe index: 5 number of parameters: 1 id: 1713 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Gene.java start line: 150 end line: 166 size: 17 LOC McCabe index: 7 number of parameters: 1 id: 1714 unit: private void addFeatureScoreFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 203 end line: 219 size: 17 LOC McCabe index: 8 number of parameters: 1 id: 1715 unit: private void addFiltersFromList() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 267 end line: 283 size: 17 LOC McCabe index: 4 number of parameters: 3 id: 1716 unit: public Object toField() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/Pointer.java start line: 105 end line: 121 size: 17 LOC McCabe index: 7 number of parameters: 0 id: 1717 unit: public static List nibByteArrayToNucleotidesList() file: server/catgenome/src/main/java/com/epam/catgenome/entity/nucleotid/NibByteFormat.java start line: 173 end line: 190 size: 17 LOC McCabe index: 3 number of parameters: 4 id: 1718 unit: public void saveOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 374 end line: 394 size: 17 LOC McCabe index: 3 number of parameters: 2 id: 1719 unit: public void saveExclOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 397 end line: 417 size: 17 LOC McCabe index: 3 number of parameters: 2 id: 1720 unit: protected List simplify() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/BigVcfFeatureIndexBuilder.java start line: 98 end line: 117 size: 17 LOC McCabe index: 2 number of parameters: 5 id: 1721 unit: protected Set getRequiredFields() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfDocumentBuilder.java start line: 109 end line: 125 size: 17 LOC McCabe index: 1 number of parameters: 0 id: 1722 unit: static PdbFile parse() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pdb/PdbFileDao.java start line: 165 end line: 181 size: 17 LOC McCabe index: 1 number of parameters: 1 id: 1723 unit: public String getAuthorizedUser() file: server/catgenome/src/main/java/com/epam/catgenome/manager/AuthManager.java start line: 66 end line: 84 size: 17 LOC McCabe index: 5 number of parameters: 0 id: 1724 unit: public Track loadFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafManager.java start line: 202 end line: 221 size: 17 LOC McCabe index: 2 number of parameters: 1 id: 1725 unit: public void readExtensionMap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 139 end line: 155 size: 17 LOC McCabe index: 3 number of parameters: 0 id: 1726 unit: public Track loadHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 253 end line: 271 size: 17 LOC McCabe index: 3 number of parameters: 1 id: 1727 unit: public BedFile reindexBedFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 609 end line: 627 size: 17 LOC McCabe index: 2 number of parameters: 1 id: 1728 unit: private static Comparator canonicalTranscriptComparator() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 390 end line: 406 size: 17 LOC McCabe index: 6 number of parameters: 0 id: 1729 unit: public Gff3BaseData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3BaseData.java start line: 35 end line: 51 size: 17 LOC McCabe index: 1 number of parameters: 9 id: 1730 unit: private Gff3FeatureImpl buildExonGffFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsToGffConvertor.java start line: 125 end line: 141 size: 17 LOC McCabe index: 2 number of parameters: 7 id: 1731 unit: public Project addProjectItem() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 404 end line: 420 size: 17 LOC McCabe index: 2 number of parameters: 2 id: 1732 unit: private VcfFilterInfo getFiltersInfo() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 578 end line: 598 size: 17 LOC McCabe index: 2 number of parameters: 1 id: 1733 unit: private LineageTree getLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeManager.java start line: 235 end line: 251 size: 17 LOC McCabe index: 1 number of parameters: 3 id: 1734 unit: private Gff3FeatureImpl convertFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genepred/GenePredManager.java start line: 147 end line: 163 size: 17 LOC McCabe index: 2 number of parameters: 5 id: 1735 unit: public SearchResult getProteinPatents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/PatentsManager.java start line: 107 end line: 124 size: 17 LOC McCabe index: 2 number of parameters: 1 id: 1736 unit: public void parseSnpInfo() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 135 end line: 158 size: 17 LOC McCabe index: 3 number of parameters: 2 id: 1737 unit: private void parseJsonFromBio() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneManager.java start line: 319 end line: 335 size: 17 LOC McCabe index: 3 number of parameters: 3 id: 1738 unit: public Map getSmiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pug/NCBIPugManager.java start line: 82 end line: 98 size: 17 LOC McCabe index: 3 number of parameters: 1 id: 1739 unit: public String fetchNcbiId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/EnsemblDataManager.java start line: 95 end line: 112 size: 17 LOC McCabe index: 3 number of parameters: 1 id: 1740 unit: private void setGeneIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homolog/HomologManager.java start line: 350 end line: 366 size: 17 LOC McCabe index: 1 number of parameters: 1 id: 1741 unit: public SearchResult fetchPubMedArticles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/PubMedService.java start line: 80 end line: 97 size: 17 LOC McCabe index: 2 number of parameters: 1 id: 1742 unit: private FilePathFormat getHistogramDirPathFormat() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1107 end line: 1124 size: 17 LOC McCabe index: 5 number of parameters: 1 id: 1743 unit: private FilePathFormat getHistogramFilePathFormat() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1126 end line: 1143 size: 17 LOC McCabe index: 5 number of parameters: 1 id: 1744 unit: private int countChildrenFiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2097 end line: 2115 size: 17 LOC McCabe index: 6 number of parameters: 1 id: 1745 unit: private File createGeneFileByType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2248 end line: 2264 size: 17 LOC McCabe index: 4 number of parameters: 2 id: 1746 unit: private void writeGenePage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/ExportManager.java start line: 106 end line: 122 size: 17 LOC McCabe index: 5 number of parameters: 4 id: 1747 unit: private void writeVcfPage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/ExportManager.java start line: 124 end line: 140 size: 17 LOC McCabe index: 5 number of parameters: 4 id: 1748 unit: private List getFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/sequence/SequencesManager.java start line: 201 end line: 217 size: 17 LOC McCabe index: 3 number of parameters: 2 id: 1749 unit: public String getStringFromNibFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 85 end line: 104 size: 17 LOC McCabe index: 1 number of parameters: 4 id: 1750 unit: private String nibByteArrayToString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 443 end line: 460 size: 17 LOC McCabe index: 3 number of parameters: 3 id: 1751 unit: private ReferenceBasesGA4GH fetchReferenceBaseEntry() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 547 end line: 564 size: 17 LOC McCabe index: 2 number of parameters: 3 id: 1752 unit: generateShortUrl() file: client/client/dataServices/utils/utils-data-service.js start line: 75 end line: 91 size: 17 LOC McCabe index: 4 number of parameters: 2 id: 1753 unit: getPdbDescription() file: client/client/dataServices/gene/gene-data-service.js start line: 103 end line: 120 size: 17 LOC McCabe index: 2 number of parameters: 1 id: 1754 unit: loadGeneHistogramTrack() file: client/client/dataServices/gene/cached-gene-data-service.js start line: 92 end line: 108 size: 17 LOC McCabe index: 5 number of parameters: 1 id: 1755 unit: recoverSettings() file: client/client/dataServices/local/local-data-service.js start line: 122 end line: 138 size: 17 LOC McCabe index: 7 number of parameters: 2 id: 1756 unit: newPos: getCurrentPos() file: client/client/app/shared/dnd/index.js start line: 59 end line: 78 size: 17 LOC McCabe index: 1 number of parameters: 1 id: 1757 unit: function open() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.directive.js start line: 11 end line: 45 size: 17 LOC McCabe index: 5 number of parameters: 1 id: 1758 unit: export function getUserDisplayNameString() file: client/client/app/shared/components/ngbUserManagement/internal/utilities.js start line: 17 end line: 34 size: 17 LOC McCabe index: 9 number of parameters: 1 id: 1759 unit: _findItemWithSameHotkey() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 119 end line: 135 size: 17 LOC McCabe index: 7 number of parameters: 4 id: 1760 unit: setPanelsFromParams() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 240 end line: 256 size: 17 LOC McCabe index: 9 number of parameters: 0 id: 1761 unit: panelAddBrowserWithVariation() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 402 end line: 422 size: 17 LOC McCabe index: 5 number of parameters: 1 id: 1762 unit: panelAddBrowserWithPairRead() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 424 end line: 444 size: 17 LOC McCabe index: 5 number of parameters: 1 id: 1763 unit: panelOpenSplitView() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 446 end line: 464 size: 17 LOC McCabe index: 5 number of parameters: 1 id: 1764 unit: const mapChromosomeFn = function() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 110 end line: 126 size: 17 LOC McCabe index: 3 number of parameters: 1 id: 1765 unit: coordinatesInputChanged() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 163 end line: 179 size: 17 LOC McCabe index: 4 number of parameters: 0 id: 1766 unit: controller: function() file: client/client/app/shared/components/widgets/collapsiblePanel/collapsible.component.js start line: 3 end line: 25 size: 17 LOC McCabe index: 5 number of parameters: 0 id: 1767 unit: getAccentColors() file: client/client/app/shared/services/color.service.js start line: 12 end line: 28 size: 17 LOC McCabe index: 1 number of parameters: 0 id: 1768 unit: _hasChanges() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 518 end line: 534 size: 17 LOC McCabe index: 5 number of parameters: 0 id: 1769 unit: saveIdentification() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 220 end line: 236 size: 17 LOC McCabe index: 6 number of parameters: 1 id: 1770 unit: export default function processLinks() file: client/client/app/components/ngbTargetPanel/utilities/process-links.js start line: 1 end line: 17 size: 17 LOC McCabe index: 2 number of parameters: 1 id: 1771 unit: setDrugsResult() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 131 end line: 147 size: 17 LOC McCabe index: 1 number of parameters: 1 id: 1772 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbFilterList.elements.js start line: 22 end line: 38 size: 17 LOC McCabe index: 4 number of parameters: 2 id: 1773 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbFilterList.elements.js start line: 22 end line: 38 size: 17 LOC McCabe index: 4 number of parameters: 2 id: 1774 unit: async searchTarget() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbTargetsTableMenu/ngbTargetsTableMenu.controller.js start line: 34 end line: 50 size: 17 LOC McCabe index: 3 number of parameters: 0 id: 1775 unit: exportResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 99 end line: 115 size: 17 LOC McCabe index: 4 number of parameters: 0 id: 1776 unit: startResizeRAF() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 113 end line: 129 size: 17 LOC McCabe index: 4 number of parameters: 0 id: 1777 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbFilterList.elements.js start line: 22 end line: 38 size: 17 LOC McCabe index: 4 number of parameters: 2 id: 1778 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbFilterList.elements.js start line: 22 end line: 38 size: 17 LOC McCabe index: 4 number of parameters: 2 id: 1779 unit: async loadData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 155 end line: 171 size: 17 LOC McCabe index: 3 number of parameters: 0 id: 1780 unit: exportResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 419 end line: 435 size: 17 LOC McCabe index: 4 number of parameters: 0 id: 1781 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 263 end line: 279 size: 17 LOC McCabe index: 1 number of parameters: 6 id: 1782 unit: setProteins() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 309 end line: 325 size: 17 LOC McCabe index: 6 number of parameters: 1 id: 1783 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbFilterList.elements.js start line: 22 end line: 38 size: 17 LOC McCabe index: 4 number of parameters: 2 id: 1784 unit: exportResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 100 end line: 116 size: 17 LOC McCabe index: 4 number of parameters: 0 id: 1785 unit: getSubjectDisplayType() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 321 end line: 337 size: 17 LOC McCabe index: 8 number of parameters: 0 id: 1786 unit: async function launchIdentification() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetSavedIdentificationsDialog/ngbTargetSavedIdentificationsDialog.run.js start line: 161 end line: 177 size: 17 LOC McCabe index: 2 number of parameters: 1 id: 1787 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbFilterList.elements.js start line: 22 end line: 38 size: 17 LOC McCabe index: 4 number of parameters: 2 id: 1788 unit: async function getIdentificationData() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetLaunchDialog/ngbTargetLaunchDialog.run.js start line: 116 end line: 132 size: 17 LOC McCabe index: 2 number of parameters: 1 id: 1789 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 154 end line: 170 size: 17 LOC McCabe index: 1 number of parameters: 6 id: 1790 unit: getTargetGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 419 end line: 435 size: 17 LOC McCabe index: 1 number of parameters: 2 id: 1791 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbFilterList.elements.js start line: 22 end line: 38 size: 17 LOC McCabe index: 4 number of parameters: 2 id: 1792 unit: confirmFilterDialog() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 714 end line: 730 size: 17 LOC McCabe index: 3 number of parameters: 1 id: 1793 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 162 end line: 178 size: 17 LOC McCabe index: 1 number of parameters: 6 id: 1794 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 79 end line: 95 size: 17 LOC McCabe index: 1 number of parameters: 6 id: 1795 unit: export function findProjectReference() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 281 end line: 297 size: 17 LOC McCabe index: 7 number of parameters: 1 id: 1796 unit: async setVariantsTable() file: client/client/app/components/ngbVcfSampleAliases/ngbVcfSampleAliases.controller.js start line: 93 end line: 109 size: 17 LOC McCabe index: 5 number of parameters: 0 id: 1797 unit: pathwaysSearch() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableContextMenu/ngbGenesTableContextMenu.controller.js start line: 123 end line: 139 size: 17 LOC McCabe index: 1 number of parameters: 0 id: 1798 unit: constructor() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbFilterList.elements.js start line: 22 end line: 38 size: 17 LOC McCabe index: 4 number of parameters: 2 id: 1799 unit: async filterChanged() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 298 end line: 314 size: 17 LOC McCabe index: 2 number of parameters: 0 id: 1800 unit: _parseSearchOptions() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 415 end line: 431 size: 17 LOC McCabe index: 5 number of parameters: 1 id: 1801 unit: setSelectedSpeciesAndRenderCanvas() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastWholeGenomeView/ngbBlastWholeGenomeView.controller.js start line: 59 end line: 75 size: 17 LOC McCabe index: 4 number of parameters: 1 id: 1802 unit: export function helper() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastWholeGenomeView/ngbBlastWholeGenomeView.helper.js start line: 1 end line: 17 size: 17 LOC McCabe index: 1 number of parameters: 5 id: 1803 unit: constructor() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.controller.js start line: 18 end line: 34 size: 17 LOC McCabe index: 1 number of parameters: 7 id: 1804 unit: constructor() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackFontSize/ngbTrackFontSize.controller.js start line: 9 end line: 25 size: 17 LOC McCabe index: 1 number of parameters: 10 id: 1805 unit: fn: async function() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.events.js start line: 411 end line: 427 size: 17 LOC McCabe index: 4 number of parameters: 1 id: 1806 unit: loadTrackInstance() file: client/client/app/components/ngbTracksView/ngbRulerTrack/ngbTrack.controller.js start line: 45 end line: 64 size: 17 LOC McCabe index: 3 number of parameters: 0 id: 1807 unit: function heatmapNameSorter() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 69 end line: 85 size: 17 LOC McCabe index: 9 number of parameters: 2 id: 1808 unit: async onTreeSelect() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.controller.js start line: 109 end line: 125 size: 17 LOC McCabe index: 3 number of parameters: 0 id: 1809 unit: set newAttributes() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 41 end line: 57 size: 17 LOC McCabe index: 2 number of parameters: 1 id: 1810 unit: function heatmapNameSorter() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 3 end line: 19 size: 17 LOC McCabe index: 9 number of parameters: 2 id: 1811 unit: reportTrackState() file: client/client/modules/render/core/track/track.js start line: 209 end line: 225 size: 17 LOC McCabe index: 5 number of parameters: 1 id: 1812 unit: const mapLineElements = function() file: client/client/modules/render/core/track/tooltip.js start line: 88 end line: 104 size: 17 LOC McCabe index: 2 number of parameters: 3 id: 1813 unit: function normalizeTooltipData() file: client/client/modules/render/core/track/tooltip.js start line: 134 end line: 151 size: 17 LOC McCabe index: 8 number of parameters: 1 id: 1814 unit: onHover() file: client/client/modules/render/core/track/scrollableTrack/scrollableTrack.js start line: 70 end line: 86 size: 17 LOC McCabe index: 5 number of parameters: 2 id: 1815 unit: checkFeature() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 157 end line: 173 size: 17 LOC McCabe index: 7 number of parameters: 2 id: 1816 unit: onHover() file: client/client/modules/render/tracks/wig/index.js start line: 148 end line: 165 size: 17 LOC McCabe index: 4 number of parameters: 2 id: 1817 unit: finishRender() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 68 end line: 84 size: 17 LOC McCabe index: 1 number of parameters: 1 id: 1818 unit: _initializeSubRenderers() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 221 end line: 237 size: 17 LOC McCabe index: 1 number of parameters: 0 id: 1819 unit: createPointers() file: client/client/modules/render/tracks/bam/internal/transformers/layoutReads.js start line: 50 end line: 66 size: 17 LOC McCabe index: 5 number of parameters: 0 id: 1820 unit: scroll() file: client/client/modules/render/tracks/gene/internal/renderer/geneRenderer.js start line: 191 end line: 207 size: 17 LOC McCabe index: 3 number of parameters: 3 id: 1821 unit: hoverItem() file: client/client/modules/render/tracks/gene/internal/renderer/geneRenderer.js start line: 246 end line: 262 size: 17 LOC McCabe index: 10 number of parameters: 4 id: 1822 unit: onHover() file: client/client/modules/render/tracks/gene/index.js start line: 332 end line: 348 size: 17 LOC McCabe index: 7 number of parameters: 2 id: 1823 unit: function getDisplayName() file: client/client/modules/render/tracks/gene/exterior/featuresMenu.js start line: 39 end line: 55 size: 17 LOC McCabe index: 6 number of parameters: 1 id: 1824 unit: get scrollIndicatorBoundaries() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/scroll.js start line: 57 end line: 73 size: 17 LOC McCabe index: 2 number of parameters: 0 id: 1825 unit: constructor() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 88 end line: 104 size: 17 LOC McCabe index: 1 number of parameters: 1 id: 1826 unit: drawNotches() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 237 end line: 253 size: 17 LOC McCabe index: 2 number of parameters: 1 id: 1827 unit: checkPosition() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 204 end line: 220 size: 17 LOC McCabe index: 6 number of parameters: 1 id: 1828 unit: onClick() file: client/client/modules/render/tracks/featureCounts/index.js start line: 41 end line: 58 size: 17 LOC McCabe index: 6 number of parameters: 2 id: 1829 unit: function getDisplayName() file: client/client/modules/render/tracks/featureCounts/menu/sourcesMenu.js start line: 39 end line: 55 size: 17 LOC McCabe index: 6 number of parameters: 1 id: 1830 unit: onHover() file: client/client/modules/render/tracks/blast/index.js start line: 71 end line: 87 size: 17 LOC McCabe index: 6 number of parameters: 2 id: 1831 unit: onHover() file: client/client/modules/render/tracks/comparison/index.js start line: 50 end line: 66 size: 17 LOC McCabe index: 6 number of parameters: 2 id: 1832 unit: render() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 72 end line: 88 size: 17 LOC McCabe index: 3 number of parameters: 4 id: 1833 unit: _drawVerticalScroll() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 236 end line: 252 size: 17 LOC McCabe index: 3 number of parameters: 1 id: 1834 unit: const mapReverseNucleotideItemsFn = function() file: client/client/modules/render/tracks/reference/referenceTransformer.js start line: 32 end line: 49 size: 17 LOC McCabe index: 3 number of parameters: 1 id: 1835 unit: static quickSort() file: client/client/modules/render/utilities/sorting.js start line: 4 end line: 20 size: 17 LOC McCabe index: 8 number of parameters: 5 id: 1836 unit: function off() file: client/client/modules/render/heatmap/interactions/index.js start line: 196 end line: 212 size: 17 LOC McCabe index: 1 number of parameters: 0 id: 1837 unit: renderLeafPoint() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/binary-tree-graphics.js start line: 220 end line: 236 size: 17 LOC McCabe index: 3 number of parameters: 2 id: 1838 unit: testScrollerHover() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 89 end line: 105 size: 17 LOC McCabe index: 6 number of parameters: 2 id: 1839 unit: destroy() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/axis-label.js start line: 285 end line: 301 size: 17 LOC McCabe index: 5 number of parameters: 0 id: 1840 unit: clear() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 140 end line: 156 size: 17 LOC McCabe index: 2 number of parameters: 0 id: 1841 unit: getSessionFlags() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 351 end line: 367 size: 17 LOC McCabe index: 7 number of parameters: 0 id: 1842 unit: initializePixiObjects() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/canvas-graphics.js start line: 6 end line: 22 size: 17 LOC McCabe index: 4 number of parameters: 0 id: 1843 unit: insertDataItem() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 366 end line: 382 size: 17 LOC McCabe index: 3 number of parameters: 2 id: 1844 unit: test() file: client/client/modules/render/heatmap/renderer/color-scheme-renderer/index.js start line: 132 end line: 148 size: 17 LOC McCabe index: 5 number of parameters: 1 id: 1845 unit: clear() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 83 end line: 103 size: 17 LOC McCabe index: 2 number of parameters: 0 id: 1846 unit: function parseDataAsTree() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 66 end line: 82 size: 17 LOC McCabe index: 4 number of parameters: 1 id: 1847 unit: function getVectorLength() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 36 end line: 52 size: 17 LOC McCabe index: 4 number of parameters: 1 id: 1848 unit: function getVectorAngle() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 89 end line: 105 size: 17 LOC McCabe index: 4 number of parameters: 1 id: 1849 unit: ensure() file: client/client/modules/render/heatmap/utilities/trie.js start line: 99 end line: 115 size: 17 LOC McCabe index: 4 number of parameters: 2 id: 1850 unit: constructor() file: client/client/modules/render/heatmap/utilities/heatmap-trie.js start line: 161 end line: 177 size: 17 LOC McCabe index: 1 number of parameters: 1 id: 1851 unit: ensureDendrogramRenderer() file: client/client/modules/render/heatmap/heatmap-view.js start line: 372 end line: 392 size: 17 LOC McCabe index: 4 number of parameters: 0 id: 1852 unit: getRatio() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 187 end line: 203 size: 17 LOC McCabe index: 7 number of parameters: 1 id: 1853 unit: export function useColumnsForSource() file: export-templates/target-identification/src/sections/known-drugs/columns.ts start line: 53 end line: 69 size: 17 LOC McCabe index: 5 number of parameters: 1 id: 1854 unit: export default function ComparativeGenomics() file: export-templates/target-identification/src/sections/comparative-genomics/index.tsx start line: 6 end line: 22 size: 17 LOC McCabe index: 1 number of parameters: 0 id: 1855 unit: private int createAndLaunchCommandManager() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/Application.java start line: 341 end line: 356 size: 16 LOC McCabe index: 2 number of parameters: 0 id: 1856 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/FileIndexingHandler.java start line: 73 end line: 90 size: 16 LOC McCabe index: 3 number of parameters: 0 id: 1857 unit: private RegistrationRequest createRegistrationRequest() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/FileRegistrationHandler.java start line: 212 end line: 229 size: 16 LOC McCabe index: 4 number of parameters: 2 id: 1858 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/pathway/PathwayRegistrationHandler.java start line: 60 end line: 75 size: 16 LOC McCabe index: 3 number of parameters: 2 id: 1859 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/reference/AbstractAnnotationReferenceHandler.java start line: 101 end line: 116 size: 16 LOC McCabe index: 3 number of parameters: 0 id: 1860 unit: protected Map fetchAdditionalFormats() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 388 end line: 403 size: 16 LOC McCabe index: 4 number of parameters: 0 id: 1861 unit: protected Project loadProject() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 672 end line: 687 size: 16 LOC McCabe index: 4 number of parameters: 1 id: 1862 unit: protected Target loadTarget() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 689 end line: 704 size: 16 LOC McCabe index: 4 number of parameters: 1 id: 1863 unit: protected AclSecuredEntry loadPermissions() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 712 end line: 727 size: 16 LOC McCabe index: 4 number of parameters: 2 id: 1864 unit: protected boolean isRoleModelEnable() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 750 end line: 765 size: 16 LOC McCabe index: 4 number of parameters: 0 id: 1865 unit: private CommandHandler instatiateCommandHandler() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandManager.java start line: 126 end line: 142 size: 16 LOC McCabe index: 2 number of parameters: 4 id: 1866 unit: protected void configure() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 187 end line: 203 size: 16 LOC McCabe index: 2 number of parameters: 1 id: 1867 unit: private InputStream createStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureIterator.java start line: 212 end line: 235 size: 16 LOC McCabe index: 3 number of parameters: 1 id: 1868 unit: private static void exchangeAllBrackets() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/RegexReverser.java start line: 102 end line: 117 size: 16 LOC McCabe index: 3 number of parameters: 1 id: 1869 unit: public SortableRecord decode() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/SortableRecordCodec.java start line: 74 end line: 93 size: 16 LOC McCabe index: 3 number of parameters: 0 id: 1870 unit: private static Integer calculateNucleotideFrequencies() file: server/catgenome/src/main/java/com/epam/catgenome/util/ConsensusSequenceUtils.java start line: 94 end line: 109 size: 16 LOC McCabe index: 3 number of parameters: 3 id: 1871 unit: private boolean urlExists() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/EnhancedUrlHelper.java start line: 96 end line: 113 size: 16 LOC McCabe index: 4 number of parameters: 0 id: 1872 unit: private String computeRepeatingSql() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 126 end line: 148 size: 16 LOC McCabe index: 3 number of parameters: 2 id: 1873 unit: public void getOrCreateObjectIdentityWithParent() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 148 end line: 163 size: 16 LOC McCabe index: 8 number of parameters: 2 id: 1874 unit: public AclSecuredEntry setPermissions() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 100 end line: 119 size: 16 LOC McCabe index: 2 number of parameters: 5 id: 1875 unit: public static Integer mergeMask() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 59 end line: 74 size: 16 LOC McCabe index: 5 number of parameters: 2 id: 1876 unit: public static Pointer fromScoreDoc() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/Pointer.java start line: 79 end line: 94 size: 16 LOC McCabe index: 4 number of parameters: 1 id: 1877 unit: private static FieldRefType getRefType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/Pointer.java start line: 135 end line: 150 size: 16 LOC McCabe index: 5 number of parameters: 1 id: 1878 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 616 end line: 634 size: 16 LOC McCabe index: 2 number of parameters: 0 id: 1879 unit: public String toString() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedIntPoint.java start line: 103 end line: 120 size: 16 LOC McCabe index: 3 number of parameters: 0 id: 1880 unit: public GeneIndexEntry searchGeneFeatureByUid() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 564 end line: 581 size: 16 LOC McCabe index: 2 number of parameters: 2 id: 1881 unit: public void createSamples() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 134 end line: 152 size: 16 LOC McCabe index: 3 number of parameters: 2 id: 1882 unit: public void updateHeatmapPaths() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 193 end line: 208 size: 16 LOC McCabe index: 3 number of parameters: 1 id: 1883 unit: public Reference createReferenceGenome() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 156 end line: 173 size: 16 LOC McCabe index: 3 number of parameters: 2 id: 1884 unit: public static BookmarkItemVO convertTo() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/BookmarkConverter.java start line: 105 end line: 124 size: 16 LOC McCabe index: 2 number of parameters: 1 id: 1885 unit: private static void setOrganismAndLineage() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/UniprotConverter.java start line: 113 end line: 132 size: 16 LOC McCabe index: 4 number of parameters: 2 id: 1886 unit: public static Project convertFrom() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/ProjectConverter.java start line: 148 end line: 166 size: 16 LOC McCabe index: 3 number of parameters: 1 id: 1887 unit: public final ResponseEntity loadTrackStream() file: server/catgenome/src/main/java/com/epam/catgenome/controller/bam/BamController.java start line: 143 end line: 159 size: 16 LOC McCabe index: 2 number of parameters: 2 id: 1888 unit: private NggbBedFeature decode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedCodec.java start line: 106 end line: 123 size: 16 LOC McCabe index: 3 number of parameters: 1 id: 1889 unit: private Sort getSort() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageManager.java start line: 209 end line: 224 size: 16 LOC McCabe index: 5 number of parameters: 1 id: 1890 unit: private void fillEmitterByBamTrackFromURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamManager.java start line: 289 end line: 305 size: 16 LOC McCabe index: 2 number of parameters: 5 id: 1891 unit: private BiologicalDataItemDownloadUrl generateDownloadUrlForLocalFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemManager.java start line: 249 end line: 264 size: 16 LOC McCabe index: 2 number of parameters: 2 id: 1892 unit: private void replaceAlleles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceReconstructionManager.java start line: 446 end line: 465 size: 16 LOC McCabe index: 3 number of parameters: 4 id: 1893 unit: private void processCds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceReconstructionManager.java start line: 570 end line: 588 size: 16 LOC McCabe index: 6 number of parameters: 7 id: 1894 unit: public String generateAndSaveShortUrlPostfix() file: server/catgenome/src/main/java/com/epam/catgenome/manager/UrlShorterManager.java start line: 60 end line: 79 size: 16 LOC McCabe index: 4 number of parameters: 2 id: 1895 unit: private void processFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 385 end line: 402 size: 16 LOC McCabe index: 4 number of parameters: 5 id: 1896 unit: public static String getFeatureId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 306 end line: 324 size: 16 LOC McCabe index: 5 number of parameters: 2 id: 1897 unit: public static String getFeatureName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 340 end line: 357 size: 16 LOC McCabe index: 5 number of parameters: 2 id: 1898 unit: private void closeStreams() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 544 end line: 559 size: 16 LOC McCabe index: 3 number of parameters: 1 id: 1899 unit: private static OrganismType determineHeterozygousGenotype() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 458 end line: 475 size: 16 LOC McCabe index: 4 number of parameters: 3 id: 1900 unit: private static VariationType getBDNVariationType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 697 end line: 712 size: 16 LOC McCabe index: 4 number of parameters: 3 id: 1901 unit: private static OrganismType determineHeterozygousGenotypeGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 524 end line: 540 size: 16 LOC McCabe index: 4 number of parameters: 3 id: 1902 unit: public Set searchGenesInVcfFilesInProject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 174 end line: 191 size: 16 LOC McCabe index: 2 number of parameters: 3 id: 1903 unit: private String checkNextChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 838 end line: 853 size: 16 LOC McCabe index: 5 number of parameters: 5 id: 1904 unit: public void importHomologeneDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 199 end line: 214 size: 16 LOC McCabe index: 2 number of parameters: 1 id: 1905 unit: public List fetchTaxonomyInfosByTerm() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIAuxiliaryManager.java start line: 85 end line: 100 size: 16 LOC McCabe index: 2 number of parameters: 1 id: 1906 unit: public String link() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 125 end line: 144 size: 16 LOC McCabe index: 2 number of parameters: 5 id: 1907 unit: private String fetchById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 204 end line: 225 size: 16 LOC McCabe index: 3 number of parameters: 5 id: 1908 unit: private List parseCIDs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pug/NCBIPugManager.java start line: 205 end line: 220 size: 16 LOC McCabe index: 4 number of parameters: 1 id: 1909 unit: private Taxonomy processTaxonomyId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 242 end line: 257 size: 16 LOC McCabe index: 5 number of parameters: 2 id: 1910 unit: public void deleteData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homolog/HomologManager.java start line: 197 end line: 212 size: 16 LOC McCabe index: 2 number of parameters: 1 id: 1911 unit: private String readCollage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 356 end line: 371 size: 16 LOC McCabe index: 3 number of parameters: 1 id: 1912 unit: private List buildSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 546 end line: 561 size: 16 LOC McCabe index: 2 number of parameters: 2 id: 1913 unit: public BufferedWriter makeGenesFileWriter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1347 end line: 1366 size: 16 LOC McCabe index: 3 number of parameters: 3 id: 1914 unit: public void makeBedIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1617 end line: 1636 size: 16 LOC McCabe index: 1 number of parameters: 2 id: 1915 unit: public static String getGeneFileExtension() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2153 end line: 2169 size: 16 LOC McCabe index: 5 number of parameters: 1 id: 1916 unit: public HeatmapTree getTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 207 end line: 222 size: 16 LOC McCabe index: 4 number of parameters: 1 id: 1917 unit: private long getLinesToRead() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 333 end line: 348 size: 16 LOC McCabe index: 4 number of parameters: 2 id: 1918 unit: public static void writeSheet() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/ExcelExportUtils.java start line: 56 end line: 71 size: 16 LOC McCabe index: 3 number of parameters: 4 id: 1919 unit: private static String getFilterClause() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileManager.java start line: 210 end line: 225 size: 16 LOC McCabe index: 5 number of parameters: 1 id: 1920 unit: private void processGeneRegistrationRequest() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 261 end line: 277 size: 16 LOC McCabe index: 3 number of parameters: 2 id: 1921 unit: public String getSequenceString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 382 end line: 397 size: 16 LOC McCabe index: 2 number of parameters: 4 id: 1922 unit: searchBamCoverage() file: client/client/dataServices/bam/bam-data-service.js start line: 314 end line: 329 size: 16 LOC McCabe index: 5 number of parameters: 1 id: 1923 unit: function _calculateHighlighted() file: client/client/dataServices/utils/highlight-condition-service.js start line: 131 end line: 146 size: 16 LOC McCabe index: 6 number of parameters: 2 id: 1924 unit: getCurrentUser() file: client/client/dataServices/user/user-data-service.js start line: 49 end line: 77 size: 16 LOC McCabe index: 2 number of parameters: 0 id: 1925 unit: grantPermission() file: client/client/dataServices/permissions/permissions-data-service.js start line: 31 end line: 46 size: 16 LOC McCabe index: 2 number of parameters: 5 id: 1926 unit: static isCurrentChromosome() file: client/client/dataServices/vcf/vcf-analyzer.js start line: 167 end line: 182 size: 16 LOC McCabe index: 8 number of parameters: 2 id: 1927 unit: setCurrentIdentification() file: client/client/app/shared/targetContext/index.js start line: 155 end line: 170 size: 16 LOC McCabe index: 2 number of parameters: 2 id: 1928 unit: async didTypeDirectory() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 157 end line: 172 size: 16 LOC McCabe index: 5 number of parameters: 0 id: 1929 unit: check() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromUrl/ngbOpenFileFromUrl.controller.js start line: 32 end line: 47 size: 16 LOC McCabe index: 9 number of parameters: 0 id: 1930 unit: export function getQueryStringParam() file: client/client/app/shared/components/ngbGoldenLayout/internal/goldenLayout.js start line: 104 end line: 125 size: 16 LOC McCabe index: 4 number of parameters: 1 id: 1931 unit: panelRemoveBlatSearchPanel() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 466 end line: 486 size: 16 LOC McCabe index: 8 number of parameters: 0 id: 1932 unit: panelRemoveBlastSearchPanel() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 488 end line: 508 size: 16 LOC McCabe index: 8 number of parameters: 0 id: 1933 unit: chromosomeInputChanged() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 105 end line: 161 size: 16 LOC McCabe index: 6 number of parameters: 1 id: 1934 unit: async _createTitle() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 351 end line: 366 size: 16 LOC McCabe index: 6 number of parameters: 0 id: 1935 unit: async __filterVariants() file: client/client/app/shared/projectContext/index.js start line: 2191 end line: 2206 size: 16 LOC McCabe index: 4 number of parameters: 2 id: 1936 unit: initEvents() file: client/client/app/shared/baseController.js start line: 10 end line: 27 size: 16 LOC McCabe index: 6 number of parameters: 0 id: 1937 unit: constructor() file: client/client/app/shared/filter/filterList/ngbFilterList.elements.js start line: 14 end line: 29 size: 16 LOC McCabe index: 4 number of parameters: 2 id: 1938 unit: static instance() file: client/client/app/shared/services/api.service.js start line: 21 end line: 36 size: 16 LOC McCabe index: 1 number of parameters: 7 id: 1939 unit: const findTrackFn = function() file: client/client/app/shared/services/api.service.js start line: 537 end line: 552 size: 16 LOC McCabe index: 9 number of parameters: 1 id: 1940 unit: setCurrentName() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 184 end line: 199 size: 16 LOC McCabe index: 8 number of parameters: 1 id: 1941 unit: _saveProject() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 481 end line: 496 size: 16 LOC McCabe index: 3 number of parameters: 2 id: 1942 unit: get isIdentificationSaved() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 78 end line: 93 size: 16 LOC McCabe index: 7 number of parameters: 0 id: 1943 unit: getAllHomologues() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 121 end line: 136 size: 16 LOC McCabe index: 4 number of parameters: 1 id: 1944 unit: async generateSummary() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 141 end line: 156 size: 16 LOC McCabe index: 3 number of parameters: 1 id: 1945 unit: resetDiseasesData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 283 end line: 298 size: 16 LOC McCabe index: 1 number of parameters: 0 id: 1946 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseases.controler.base.js start line: 2 end line: 17 size: 16 LOC McCabe index: 1 number of parameters: 3 id: 1947 unit: function getDataServiceEndpointAbsoluteURL() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 43 end line: 59 size: 16 LOC McCabe index: 7 number of parameters: 1 id: 1948 unit: apply() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTableFilter/ngbStructureTableFilter.controller.js start line: 25 end line: 40 size: 16 LOC McCabe index: 5 number of parameters: 0 id: 1949 unit: targetName: getName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 151 end line: 167 size: 16 LOC McCabe index: 1 number of parameters: 1 id: 1950 unit: setParasiteFieldList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 470 end line: 485 size: 16 LOC McCabe index: 1 number of parameters: 0 id: 1951 unit: calculateDiff() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsAlignment/ngbGenomicsAlignment.controller.js start line: 88 end line: 103 size: 16 LOC McCabe index: 7 number of parameters: 1 id: 1952 unit: async alignComparison() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 250 end line: 265 size: 16 LOC McCabe index: 4 number of parameters: 0 id: 1953 unit: selectPermissionSubject() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 202 end line: 217 size: 16 LOC McCabe index: 4 number of parameters: 2 id: 1954 unit: onAddUser() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 287 end line: 302 size: 16 LOC McCabe index: 1 number of parameters: 0 id: 1955 unit: onAddRole() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 304 end line: 319 size: 16 LOC McCabe index: 2 number of parameters: 0 id: 1956 unit: export default function run() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetSavedIdentificationsDialog/ngbTargetSavedIdentificationsDialog.run.js start line: 8 end line: 243 size: 16 LOC McCabe index: 1 number of parameters: 7 id: 1957 unit: apply() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterInput/ngbTargetsFilterInput.controller.js start line: 25 end line: 40 size: 16 LOC McCabe index: 5 number of parameters: 0 id: 1958 unit: export default function run() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetLaunchDialog/ngbTargetLaunchDialog.run.js start line: 11 end line: 191 size: 16 LOC McCabe index: 1 number of parameters: 7 id: 1959 unit: deleteTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 871 end line: 886 size: 16 LOC McCabe index: 1 number of parameters: 0 id: 1960 unit: hideList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 68 end line: 83 size: 16 LOC McCabe index: 4 number of parameters: 0 id: 1961 unit: toggleMenu() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 626 end line: 641 size: 16 LOC McCabe index: 2 number of parameters: 2 id: 1962 unit: async getList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableCells/ngbTargetGenesList/ngbTargetGenesList.controller.js start line: 28 end line: 43 size: 16 LOC McCabe index: 4 number of parameters: 1 id: 1963 unit: selectPermissionSubject() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 203 end line: 218 size: 16 LOC McCabe index: 4 number of parameters: 2 id: 1964 unit: onAddRole() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 274 end line: 289 size: 16 LOC McCabe index: 2 number of parameters: 0 id: 1965 unit: onAddUser() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 291 end line: 306 size: 16 LOC McCabe index: 1 number of parameters: 0 id: 1966 unit: apply() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterInput/ngbGenesFilterInput.controller.js start line: 16 end line: 31 size: 16 LOC McCabe index: 8 number of parameters: 0 id: 1967 unit: homologsSearch() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableContextMenu/ngbGenesTableContextMenu.controller.js start line: 106 end line: 121 size: 16 LOC McCabe index: 1 number of parameters: 0 id: 1968 unit: async geneClick() file: client/client/app/components/ngbMolecularViewer/ngbMolecularViewer.controller.js start line: 138 end line: 153 size: 16 LOC McCabe index: 3 number of parameters: 1 id: 1969 unit: variantsLoadingFinished() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 248 end line: 264 size: 16 LOC McCabe index: 3 number of parameters: 0 id: 1970 unit: export default function run() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbHeatmapColorSchemePreference/ngbHeatmapColorSchemePreference.run.js start line: 1 end line: 32 size: 16 LOC McCabe index: 2 number of parameters: 3 id: 1971 unit: function parseConfigStr() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.service.js start line: 28 end line: 43 size: 16 LOC McCabe index: 4 number of parameters: 1 id: 1972 unit: async initialize() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.controller.js start line: 56 end line: 71 size: 16 LOC McCabe index: 3 number of parameters: 0 id: 1973 unit: realignMenuPosition() file: client/client/app/components/ngbTracksSelection/ngbTracksSelection.controller.js start line: 73 end line: 88 size: 16 LOC McCabe index: 4 number of parameters: 0 id: 1974 unit: constructor() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoMain/ngbFeatureInfoMain.controller.js start line: 13 end line: 30 size: 16 LOC McCabe index: 3 number of parameters: 6 id: 1975 unit: function extractProperties() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.run.js start line: 4 end line: 19 size: 16 LOC McCabe index: 6 number of parameters: 2 id: 1976 unit: disableSaveButton() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 113 end line: 128 size: 16 LOC McCabe index: 11 number of parameters: 0 id: 1977 unit: _preprocessAttributes() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 222 end line: 237 size: 16 LOC McCabe index: 2 number of parameters: 1 id: 1978 unit: constructor() file: client/client/modules/render/core/track/cachedTrack/cachedTrack.js start line: 8 end line: 23 size: 16 LOC McCabe index: 5 number of parameters: 1 id: 1979 unit: export default function menuFactory() file: client/client/modules/render/core/track/menu.js start line: 25 end line: 63 size: 16 LOC McCabe index: 1 number of parameters: 1 id: 1980 unit: invalidate() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 91 end line: 106 size: 16 LOC McCabe index: 3 number of parameters: 0 id: 1981 unit: const pushItem = function() file: client/client/modules/render/tracks/wig/wigTransformer.js start line: 167 end line: 182 size: 16 LOC McCabe index: 6 number of parameters: 1 id: 1982 unit: _renderPairedReadConnection() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 452 end line: 467 size: 16 LOC McCabe index: 2 number of parameters: 1 id: 1983 unit: _checkAlignment() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 619 end line: 634 size: 16 LOC McCabe index: 4 number of parameters: 2 id: 1984 unit: length: parseInt() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 47 end line: 63 size: 16 LOC McCabe index: 2 number of parameters: 1 id: 1985 unit: constructor() file: client/client/modules/render/tracks/motifs/motifsRenderer.js start line: 17 end line: 35 size: 16 LOC McCabe index: 1 number of parameters: 4 id: 1986 unit: translateContainer() file: client/client/modules/render/tracks/gene/internal/renderer/geneRenderer.js start line: 209 end line: 224 size: 16 LOC McCabe index: 2 number of parameters: 2 id: 1987 unit: static analyzeTranscript() file: client/client/modules/render/tracks/gene/internal/data/geneTransformer.js start line: 156 end line: 172 size: 16 LOC McCabe index: 6 number of parameters: 1 id: 1988 unit: analyzeBoundaries() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/intraChromosomeFeatureRenderer.js start line: 7 end line: 22 size: 16 LOC McCabe index: 3 number of parameters: 2 id: 1989 unit: render() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 25 end line: 40 size: 16 LOC McCabe index: 4 number of parameters: 2 id: 1990 unit: render() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 280 end line: 295 size: 16 LOC McCabe index: 2 number of parameters: 2 id: 1991 unit: hoverItem() file: client/client/modules/render/tracks/blast/renderer.js start line: 35 end line: 50 size: 16 LOC McCabe index: 4 number of parameters: 3 id: 1992 unit: static quickSortWithComparison() file: client/client/modules/render/utilities/sorting.js start line: 22 end line: 37 size: 16 LOC McCabe index: 7 number of parameters: 4 id: 1993 unit: submitArea() file: client/client/modules/render/utilities/zonesManager.js start line: 180 end line: 195 size: 16 LOC McCabe index: 3 number of parameters: 2 id: 1994 unit: function intersects() file: client/client/modules/render/utilities/zonesManager.js start line: 301 end line: 316 size: 16 LOC McCabe index: 5 number of parameters: 2 id: 1995 unit: export default async function destroyPixiDisplayObjects() file: client/client/modules/render/utilities/destroyPixiDisplayObjects.js start line: 1 end line: 16 size: 16 LOC McCabe index: 4 number of parameters: 2 id: 1996 unit: updateButtonStates() file: client/client/modules/render/heatmap/renderer/heatmap-options-renderer/index.js start line: 77 end line: 92 size: 16 LOC McCabe index: 7 number of parameters: 0 id: 1997 unit: onDrag() file: client/client/modules/render/heatmap/renderer/viewport-renderer/index.js start line: 91 end line: 106 size: 16 LOC McCabe index: 1 number of parameters: 1 id: 1998 unit: onDragEnd() file: client/client/modules/render/heatmap/renderer/viewport-renderer/index.js start line: 108 end line: 123 size: 16 LOC McCabe index: 1 number of parameters: 1 id: 1999 unit: rebuild() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 198 end line: 213 size: 16 LOC McCabe index: 2 number of parameters: 1 id: 2000 unit: animate() file: client/client/modules/render/heatmap/animation/animation.js start line: 60 end line: 75 size: 16 LOC McCabe index: 5 number of parameters: 1 id: 2001 unit: buildOrderedColumns() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 239 end line: 254 size: 16 LOC McCabe index: 5 number of parameters: 0 id: 2002 unit: buildOrderedRows() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 256 end line: 271 size: 16 LOC McCabe index: 5 number of parameters: 0 id: 2003 unit: export function makeSection() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 208 end line: 223 size: 16 LOC McCabe index: 1 number of parameters: 3 id: 2004 unit: export function getRotatedRectangleBounds() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 351 end line: 366 size: 16 LOC McCabe index: 2 number of parameters: 2 id: 2005 unit: constructor() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 65 end line: 80 size: 16 LOC McCabe index: 2 number of parameters: 2 id: 2006 unit: renderDendrogram() file: client/client/modules/render/heatmap/heatmap-view.js start line: 546 end line: 566 size: 16 LOC McCabe index: 3 number of parameters: 0 id: 2007 unit: initializeFrom() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 248 end line: 263 size: 16 LOC McCabe index: 3 number of parameters: 2 id: 2008 unit: removeColorConfiguration() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 482 end line: 497 size: 16 LOC McCabe index: 3 number of parameters: 1 id: 2009 unit: _renderGeneStructure() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 814 end line: 829 size: 16 LOC McCabe index: 6 number of parameters: 3 id: 2010 unit: function GeneCard() file: export-templates/target-identification/src/sections/main/index.tsx start line: 13 end line: 28 size: 16 LOC McCabe index: 2 number of parameters: 1 id: 2011 unit: export function Expander() file: export-templates/target-identification/src/sections/main/expandable-text.tsx start line: 29 end line: 44 size: 16 LOC McCabe index: 2 number of parameters: 1 id: 2012 unit: function PaginationButton() file: export-templates/target-identification/src/common/pagination/index.tsx start line: 17 end line: 32 size: 16 LOC McCabe index: 1 number of parameters: 1 id: 2013 unit: function renderTableCell() file: export-templates/target-identification/src/common/table/index.tsx start line: 136 end line: 151 size: 16 LOC McCabe index: 2 number of parameters: 4 id: 2014 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/species/SpeciesAddingHandler.java start line: 77 end line: 91 size: 15 LOC McCabe index: 3 number of parameters: 0 id: 2015 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/gene/GeneAddingHandler.java start line: 100 end line: 114 size: 15 LOC McCabe index: 3 number of parameters: 0 id: 2016 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/pdb/PdbFileRegistrationHandler.java start line: 60 end line: 74 size: 15 LOC McCabe index: 3 number of parameters: 2 id: 2017 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/reference/ProteinAddingHandler.java start line: 77 end line: 91 size: 15 LOC McCabe index: 3 number of parameters: 0 id: 2018 unit: protected void checkAndPrintResult() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 495 end line: 509 size: 15 LOC McCabe index: 5 number of parameters: 4 id: 2019 unit: public SimpleMotifSearchIterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/SimpleMotifSearchIterator.java start line: 56 end line: 70 size: 15 LOC McCabe index: 1 number of parameters: 6 id: 2020 unit: public boolean isExtendedInfoField() file: server/catgenome/src/main/java/com/epam/catgenome/util/InfoFieldParser.java start line: 93 end line: 108 size: 15 LOC McCabe index: 4 number of parameters: 1 id: 2021 unit: private static String checkFirstCriteria() file: server/catgenome/src/main/java/com/epam/catgenome/util/ConsensusSequenceUtils.java start line: 147 end line: 161 size: 15 LOC McCabe index: 5 number of parameters: 2 id: 2022 unit: private AmazonS3 getAws() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 99 end line: 113 size: 15 LOC McCabe index: 5 number of parameters: 1 id: 2023 unit: public boolean isFileExisting() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 121 end line: 137 size: 15 LOC McCabe index: 4 number of parameters: 1 id: 2024 unit: private static Index createIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 173 end line: 190 size: 15 LOC McCabe index: 2 number of parameters: 3 id: 2025 unit: public FeatureIterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 237 end line: 252 size: 15 LOC McCabe index: 2 number of parameters: 2 id: 2026 unit: public static Set getGeneIds() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 575 end line: 589 size: 15 LOC McCabe index: 1 number of parameters: 4 id: 2027 unit: public SwaggerSpringMvcPlugin customImplementation() file: server/catgenome/src/main/java/com/epam/catgenome/config/SwaggerConfig.java start line: 64 end line: 79 size: 15 LOC McCabe index: 1 number of parameters: 0 id: 2028 unit: public void syncEntities() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 176 end line: 190 size: 15 LOC McCabe index: 2 number of parameters: 0 id: 2029 unit: private void checkAbilityToCreate() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLUserDetailsServiceImpl.java start line: 148 end line: 162 size: 15 LOC McCabe index: 4 number of parameters: 2 id: 2030 unit: private List buildUserRoles() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLUserDetailsServiceImpl.java start line: 260 end line: 276 size: 15 LOC McCabe index: 1 number of parameters: 4 id: 2031 unit: public String myCacheKey() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Track.java start line: 83 end line: 98 size: 15 LOC McCabe index: 6 number of parameters: 0 id: 2032 unit: private void addFeatureTypesFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 226 end line: 240 size: 15 LOC McCabe index: 3 number of parameters: 1 id: 2033 unit: public BooleanQuery computeQuery() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 91 end line: 106 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 2034 unit: private void addQualityFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 161 end line: 175 size: 15 LOC McCabe index: 7 number of parameters: 1 id: 2035 unit: public VcfIndexEntry() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/VcfIndexEntry.java start line: 80 end line: 94 size: 15 LOC McCabe index: 2 number of parameters: 1 id: 2036 unit: public NgbUser createUser() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 106 end line: 122 size: 15 LOC McCabe index: 3 number of parameters: 2 id: 2037 unit: public void updateBiologicalDataItems() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 137 end line: 151 size: 15 LOC McCabe index: 3 number of parameters: 1 id: 2038 unit: public void createSamples() file: server/catgenome/src/main/java/com/epam/catgenome/dao/vcf/VcfFileDao.java start line: 156 end line: 171 size: 15 LOC McCabe index: 2 number of parameters: 2 id: 2039 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeEdgeDao.java start line: 68 end line: 82 size: 15 LOC McCabe index: 4 number of parameters: 2 id: 2040 unit: public int countGenesInInterval() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 1102 end line: 1117 size: 15 LOC McCabe index: 2 number of parameters: 3 id: 2041 unit: private void addViewField() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/BigVcfDocumentBuilder.java start line: 410 end line: 425 size: 15 LOC McCabe index: 3 number of parameters: 4 id: 2042 unit: public BigVcfFeatureIndexBuilder() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/BigVcfFeatureIndexBuilder.java start line: 81 end line: 95 size: 15 LOC McCabe index: 1 number of parameters: 7 id: 2043 unit: public static AbstractDocumentBuilder createDocumentCreator() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/AbstractDocumentBuilder.java start line: 280 end line: 294 size: 15 LOC McCabe index: 3 number of parameters: 2 id: 2044 unit: static Gene parseGene() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneDescDao.java start line: 135 end line: 149 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 2045 unit: public List savePathwayOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayOrganismDao.java start line: 63 end line: 77 size: 15 LOC McCabe index: 3 number of parameters: 2 id: 2046 unit: public static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 106 end line: 120 size: 15 LOC McCabe index: 1 number of parameters: 0 id: 2047 unit: public static ProjectItem convertFrom() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/ProjectConverter.java start line: 173 end line: 191 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 2048 unit: public static String convertDataToJsonStringForQuery() file: server/catgenome/src/main/java/com/epam/catgenome/controller/JsonMapper.java start line: 108 end line: 122 size: 15 LOC McCabe index: 4 number of parameters: 1 id: 2049 unit: public Track loadFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 200 end line: 216 size: 15 LOC McCabe index: 2 number of parameters: 3 id: 2050 unit: private String builtPatentText() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/LLMService.java start line: 105 end line: 119 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 2051 unit: protected String parseName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/FacadeWigManager.java start line: 246 end line: 260 size: 15 LOC McCabe index: 4 number of parameters: 2 id: 2052 unit: private void fillBlocksFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/BedGraphProcessor.java start line: 138 end line: 152 size: 15 LOC McCabe index: 2 number of parameters: 5 id: 2053 unit: private float getScoreForBounds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/BedGraphProcessor.java start line: 169 end line: 186 size: 15 LOC McCabe index: 5 number of parameters: 3 id: 2054 unit: private void refreshForNewFrame() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/ConstantMemorySAMRecordSampler.java start line: 164 end line: 180 size: 15 LOC McCabe index: 4 number of parameters: 1 id: 2055 unit: public void add() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/StandardSAMRecordSifter.java start line: 96 end line: 110 size: 15 LOC McCabe index: 4 number of parameters: 6 id: 2056 unit: private Handler filterReads() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 390 end line: 410 size: 15 LOC McCabe index: 2 number of parameters: 6 id: 2057 unit: private void addRecordToBlock() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 464 end line: 478 size: 15 LOC McCabe index: 4 number of parameters: 3 id: 2058 unit: private void fillEmitterByBamTrack() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamManager.java start line: 271 end line: 287 size: 15 LOC McCabe index: 2 number of parameters: 3 id: 2059 unit: public BiologicalDataItemDownloadUrl generateDownloadUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemManager.java start line: 223 end line: 237 size: 15 LOC McCabe index: 4 number of parameters: 2 id: 2060 unit: private void makeStatisticFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 517 end line: 532 size: 15 LOC McCabe index: 2 number of parameters: 2 id: 2061 unit: private void loadExonsForward() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 1147 end line: 1163 size: 15 LOC McCabe index: 4 number of parameters: 7 id: 2062 unit: public List deleteByProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectDescriptionService.java start line: 111 end line: 127 size: 15 LOC McCabe index: 2 number of parameters: 2 id: 2063 unit: public Variation getNextOrPreviousVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 134 end line: 148 size: 15 LOC McCabe index: 4 number of parameters: 6 id: 2064 unit: private Variation getNextVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 305 end line: 319 size: 15 LOC McCabe index: 4 number of parameters: 6 id: 2065 unit: public List loadVcfFiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfFileManager.java start line: 119 end line: 134 size: 15 LOC McCabe index: 3 number of parameters: 1 id: 2066 unit: public List filterChromosomes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 214 end line: 231 size: 15 LOC McCabe index: 2 number of parameters: 2 id: 2067 unit: public GooglePatentManager() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/GooglePatentManager.java start line: 64 end line: 78 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 2068 unit: public List getAllPatents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/GooglePatentManager.java start line: 91 end line: 105 size: 15 LOC McCabe index: 3 number of parameters: 1 id: 2069 unit: public NCBIShortVarVO fetchVariationById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIShortVarManager.java start line: 130 end line: 148 size: 15 LOC McCabe index: 2 number of parameters: 1 id: 2070 unit: private void correctNggbVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIShortVarManager.java start line: 275 end line: 292 size: 15 LOC McCabe index: 4 number of parameters: 2 id: 2071 unit: public NCBIClinVarVO fetchVariationById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIClinVarManager.java start line: 62 end line: 77 size: 15 LOC McCabe index: 4 number of parameters: 1 id: 2072 unit: public JsonNode summaryWithHistory() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 291 end line: 305 size: 15 LOC McCabe index: 2 number of parameters: 4 id: 2073 unit: public Map fetchGeneSummaryByIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneManager.java start line: 230 end line: 244 size: 15 LOC McCabe index: 2 number of parameters: 1 id: 2074 unit: public Map getEntrezMap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneManager.java start line: 247 end line: 261 size: 15 LOC McCabe index: 4 number of parameters: 1 id: 2075 unit: public EnsemblEntryVO fetchEnsemblEntry() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/EnsemblDataManager.java start line: 78 end line: 93 size: 15 LOC McCabe index: 2 number of parameters: 1 id: 2076 unit: public EnsemblVariationEntryVO fetchVariationEntry() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/EnsemblDataManager.java start line: 124 end line: 139 size: 15 LOC McCabe index: 2 number of parameters: 2 id: 2077 unit: public BlastTask create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 108 end line: 122 size: 15 LOC McCabe index: 3 number of parameters: 1 id: 2078 unit: public void deleteTasks() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 136 end line: 150 size: 15 LOC McCabe index: 1 number of parameters: 0 id: 2079 unit: private BlastTaskStatus getStatus() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 229 end line: 243 size: 15 LOC McCabe index: 4 number of parameters: 1 id: 2080 unit: private SegFile getSegFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegManager.java start line: 178 end line: 192 size: 15 LOC McCabe index: 4 number of parameters: 2 id: 2081 unit: public static void fillHeader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/ExcelExportUtils.java start line: 73 end line: 87 size: 15 LOC McCabe index: 2 number of parameters: 3 id: 2082 unit: public Page load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileManager.java start line: 125 end line: 139 size: 15 LOC McCabe index: 2 number of parameters: 1 id: 2083 unit: public static long getContentLength() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaUtils.java start line: 64 end line: 78 size: 15 LOC McCabe index: 3 number of parameters: 1 id: 2084 unit: public List fillSequenceOfGCForGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 343 end line: 358 size: 15 LOC McCabe index: 2 number of parameters: 4 id: 2085 unit: public List createGCList() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 481 end line: 497 size: 15 LOC McCabe index: 2 number of parameters: 3 id: 2086 unit: private void addBase2GC() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataWriter.java start line: 148 end line: 162 size: 15 LOC McCabe index: 4 number of parameters: 3 id: 2087 unit: private List getReferenceSequenceWithGC() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 462 end line: 476 size: 15 LOC McCabe index: 3 number of parameters: 6 id: 2088 unit: getBedHistogram() file: client/client/dataServices/bed/bed-data-service.js start line: 33 end line: 47 size: 15 LOC McCabe index: 4 number of parameters: 1 id: 2089 unit: function _regularizeString() file: client/client/dataServices/utils/highlight-condition-service.js start line: 257 end line: 271 size: 15 LOC McCabe index: 7 number of parameters: 1 id: 2090 unit: loadGeneHistogramTrack() file: client/client/dataServices/gene/gene-data-service.js start line: 13 end line: 27 size: 15 LOC McCabe index: 4 number of parameters: 1 id: 2091 unit: rebuildSettings() file: client/client/dataServices/local/local-data-service.js start line: 106 end line: 120 size: 15 LOC McCabe index: 5 number of parameters: 2 id: 2092 unit: searchGeneNames() file: client/client/dataServices/project/project-data-service.js start line: 77 end line: 91 size: 15 LOC McCabe index: 4 number of parameters: 3 id: 2093 unit: downloadVcf() file: client/client/dataServices/project/project-data-service.js start line: 146 end line: 160 size: 15 LOC McCabe index: 2 number of parameters: 3 id: 2094 unit: getNCBIFeatureCoordinates() file: client/client/dataServices/project/project-data-service.js start line: 326 end line: 340 size: 15 LOC McCabe index: 2 number of parameters: 2 id: 2095 unit: function getHeatmapUrl() file: client/client/dataServices/heatmap/heatmap-data-service.js start line: 47 end line: 61 size: 15 LOC McCabe index: 4 number of parameters: 2 id: 2096 unit: downloadGenes() file: client/client/dataServices/genome/genome-data-service.js start line: 166 end line: 180 size: 15 LOC McCabe index: 2 number of parameters: 3 id: 2097 unit: constructor() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.builder.js start line: 17 end line: 31 size: 15 LOC McCabe index: 4 number of parameters: 6 id: 2098 unit: export function getUserAttributesString() file: client/client/app/shared/components/ngbUserManagement/internal/utilities.js start line: 1 end line: 15 size: 15 LOC McCabe index: 7 number of parameters: 1 id: 2099 unit: openCreateGroupDlg() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 228 end line: 244 size: 15 LOC McCabe index: 1 number of parameters: 0 id: 2100 unit: openEditGroupDlg() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 246 end line: 262 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 2101 unit: openEditRoleDlg() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 264 end line: 280 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 2102 unit: export default function() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.size.filter.js start line: 3 end line: 17 size: 15 LOC McCabe index: 2 number of parameters: 0 id: 2103 unit: constructor() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 12 end line: 28 size: 15 LOC McCabe index: 4 number of parameters: 2 id: 2104 unit: export function getModelDefaultOptions() file: client/client/app/shared/components/ngbLLM/utilities.js start line: 5 end line: 19 size: 15 LOC McCabe index: 5 number of parameters: 2 id: 2105 unit: panelAddStrainLineage() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 611 end line: 627 size: 15 LOC McCabe index: 6 number of parameters: 0 id: 2106 unit: panelAddCoveragePanel() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 629 end line: 645 size: 15 LOC McCabe index: 6 number of parameters: 0 id: 2107 unit: async _createTitleBrowserId() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 333 end line: 349 size: 15 LOC McCabe index: 3 number of parameters: 0 id: 2108 unit: function analyzeTranscriptStructure() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 1133 end line: 1147 size: 15 LOC McCabe index: 6 number of parameters: 3 id: 2109 unit: set tracksState() file: client/client/app/shared/projectContext/index.js start line: 460 end line: 474 size: 15 LOC McCabe index: 5 number of parameters: 1 id: 2110 unit: registerTrackInstance() file: client/client/app/shared/projectContext/index.js start line: 553 end line: 567 size: 15 LOC McCabe index: 6 number of parameters: 1 id: 2111 unit: _mergeDeep() file: client/client/app/shared/services/api.service.js start line: 641 end line: 657 size: 15 LOC McCabe index: 7 number of parameters: 2 id: 2112 unit: checkHeatmapConsistency() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbProjectSummary/ngbProjectSummary.controller.js start line: 160 end line: 174 size: 15 LOC McCabe index: 8 number of parameters: 2 id: 2113 unit: setList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbDiseasesTargetsFilterList.controller.js start line: 44 end line: 58 size: 15 LOC McCabe index: 6 number of parameters: 0 id: 2114 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 94 end line: 108 size: 15 LOC McCabe index: 1 number of parameters: 5 id: 2115 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 17 end line: 32 size: 15 LOC McCabe index: 3 number of parameters: 4 id: 2116 unit: async loadTableDataIfRequired() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 177 end line: 191 size: 15 LOC McCabe index: 4 number of parameters: 0 id: 2117 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 17 end line: 32 size: 15 LOC McCabe index: 3 number of parameters: 4 id: 2118 unit: getProteins() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 201 end line: 217 size: 15 LOC McCabe index: 7 number of parameters: 1 id: 2119 unit: async setIdentifier() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 141 end line: 155 size: 15 LOC McCabe index: 3 number of parameters: 0 id: 2120 unit: url: getNcbiUrl() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 497 end line: 521 size: 15 LOC McCabe index: 3 number of parameters: 1 id: 2121 unit: getColumnList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 198 end line: 212 size: 15 LOC McCabe index: 5 number of parameters: 0 id: 2122 unit: displayName: userInfo ? getUserDisplayNameString() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 271 end line: 288 size: 15 LOC McCabe index: 3 number of parameters: 1 id: 2123 unit: getSubjectDisplayName() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 339 end line: 353 size: 15 LOC McCabe index: 7 number of parameters: 0 id: 2124 unit: function deleteIdentification() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetSavedIdentificationsDialog/ngbTargetSavedIdentificationsDialog.run.js start line: 105 end line: 119 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 2125 unit: async function getGenesInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetSavedIdentificationsDialog/ngbTargetSavedIdentificationsDialog.run.js start line: 145 end line: 159 size: 15 LOC McCabe index: 1 number of parameters: 2 id: 2126 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsTableFilter.controller.js start line: 9 end line: 23 size: 15 LOC McCabe index: 3 number of parameters: 0 id: 2127 unit: areGenesEmpty() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 280 end line: 294 size: 15 LOC McCabe index: 12 number of parameters: 0 id: 2128 unit: searchGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 437 end line: 451 size: 15 LOC McCabe index: 2 number of parameters: 1 id: 2129 unit: async loadData() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 431 end line: 445 size: 15 LOC McCabe index: 2 number of parameters: 0 id: 2130 unit: const itemsSort = function() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 146 end line: 165 size: 15 LOC McCabe index: 10 number of parameters: 2 id: 2131 unit: _formatServerToClient() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 491 end line: 505 size: 15 LOC McCabe index: 5 number of parameters: 1 id: 2132 unit: homologsSearch() file: client/client/app/components/ngbMolecularViewer/ngbMolecularViewer.controller.js start line: 195 end line: 209 size: 15 LOC McCabe index: 1 number of parameters: 0 id: 2133 unit: showInfo() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 227 end line: 242 size: 15 LOC McCabe index: 1 number of parameters: 2 id: 2134 unit: static instance() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 66 end line: 80 size: 15 LOC McCabe index: 1 number of parameters: 5 id: 2135 unit: async setSearchCoverageRequest() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 108 end line: 122 size: 15 LOC McCabe index: 2 number of parameters: 2 id: 2136 unit: async initialize() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 120 end line: 134 size: 15 LOC McCabe index: 1 number of parameters: 0 id: 2137 unit: constructor() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.controller.js start line: 13 end line: 27 size: 15 LOC McCabe index: 1 number of parameters: 6 id: 2138 unit: template: require() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackCoverageSettings/ngbTrackCoverageSettings.component.js start line: 5 end line: 19 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 2139 unit: getSequence: async function() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.events.js start line: 462 end line: 476 size: 15 LOC McCabe index: 5 number of parameters: 0 id: 2140 unit: constructor() file: client/client/app/components/ngbPathways/ngbPathwaysPanel.controller.js start line: 22 end line: 36 size: 15 LOC McCabe index: 2 number of parameters: 4 id: 2141 unit: set routeInfo() file: client/client/app/components/ngbPathways/ngbPathways.service.js start line: 83 end line: 97 size: 15 LOC McCabe index: 3 number of parameters: 1 id: 2142 unit: resizeCytoscape() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 351 end line: 365 size: 15 LOC McCabe index: 4 number of parameters: 0 id: 2143 unit: getPlainNodes() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 389 end line: 403 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 2144 unit: resizeCytoscape() file: client/client/app/components/ngbStrainLineage/ngbCytoscape/ngbCytoscape.controller.js start line: 220 end line: 234 size: 15 LOC McCabe index: 4 number of parameters: 0 id: 2145 unit: async loadFeatureInfo() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfo.controller.js start line: 42 end line: 57 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 2146 unit: correctPosition() file: client/client/modules/render/core/track/tooltip.js start line: 51 end line: 65 size: 15 LOC McCabe index: 2 number of parameters: 1 id: 2147 unit: drawVerticalScroll() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRendererWIthVerticalScroll.js start line: 57 end line: 71 size: 15 LOC McCabe index: 4 number of parameters: 1 id: 2148 unit: function wrapDisplayFn() file: client/client/modules/render/core/menu/buildMenu.js start line: 27 end line: 41 size: 15 LOC McCabe index: 2 number of parameters: 2 id: 2149 unit: appendTickGraphics() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 120 end line: 134 size: 15 LOC McCabe index: 2 number of parameters: 2 id: 2150 unit: static _buildDividerValues() file: client/client/modules/render/tracks/wig/wigTransformer.js start line: 128 end line: 145 size: 15 LOC McCabe index: 3 number of parameters: 5 id: 2151 unit: isThresholdValue() file: client/client/modules/render/tracks/wig/wigTransformer.js start line: 329 end line: 343 size: 15 LOC McCabe index: 8 number of parameters: 1 id: 2152 unit: _getReadBreaks() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 370 end line: 384 size: 15 LOC McCabe index: 5 number of parameters: 1 id: 2153 unit: _renderMethylation() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 550 end line: 564 size: 15 LOC McCabe index: 3 number of parameters: 1 id: 2154 unit: _initCoverage() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 354 end line: 368 size: 15 LOC McCabe index: 1 number of parameters: 0 id: 2155 unit: _initSpliceJunctionsGraphics() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 377 end line: 391 size: 15 LOC McCabe index: 1 number of parameters: 0 id: 2156 unit: export function undumpInfo() file: client/client/modules/render/tracks/bam/internal/internalUtilities.js start line: 28 end line: 43 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 2157 unit: onClick() file: client/client/modules/render/tracks/bam/index.js start line: 537 end line: 551 size: 15 LOC McCabe index: 10 number of parameters: 2 id: 2158 unit: trackSettingsChanged() file: client/client/modules/render/tracks/gene/index.js start line: 233 end line: 247 size: 15 LOC McCabe index: 6 number of parameters: 1 id: 2159 unit: constructor() file: client/client/modules/render/tracks/common/coordinateSystemRenderer/index.js start line: 36 end line: 50 size: 15 LOC McCabe index: 6 number of parameters: 2 id: 2160 unit: _getColorStructure() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/statisticsContainer.js start line: 122 end line: 136 size: 15 LOC McCabe index: 3 number of parameters: 1 id: 2161 unit: checkSourceTitle() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 222 end line: 236 size: 15 LOC McCabe index: 7 number of parameters: 1 id: 2162 unit: hoverItem() file: client/client/modules/render/tracks/comparison/renderer.js start line: 31 end line: 45 size: 15 LOC McCabe index: 4 number of parameters: 2 id: 2163 unit: _updateNoGCContentLable() file: client/client/modules/render/tracks/reference/referenceRenderer.js start line: 295 end line: 309 size: 15 LOC McCabe index: 5 number of parameters: 2 id: 2164 unit: static _linearDimensionsConflict() file: client/client/modules/render/utilities/zonesManager.js start line: 391 end line: 405 size: 15 LOC McCabe index: 7 number of parameters: 5 id: 2165 unit: function fillRange() file: client/client/modules/render/utilities/coordinateSystem.js start line: 25 end line: 39 size: 15 LOC McCabe index: 4 number of parameters: 3 id: 2166 unit: destroy() file: client/client/modules/render/heatmap/interactions/index.js start line: 44 end line: 58 size: 15 LOC McCabe index: 3 number of parameters: 0 id: 2167 unit: getSessionFlags() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 335 end line: 349 size: 15 LOC McCabe index: 4 number of parameters: 0 id: 2168 unit: destroy() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 155 end line: 169 size: 15 LOC McCabe index: 3 number of parameters: 0 id: 2169 unit: renderMask() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 439 end line: 453 size: 15 LOC McCabe index: 2 number of parameters: 0 id: 2170 unit: constructor() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/collapsed-tree.js start line: 20 end line: 34 size: 15 LOC McCabe index: 2 number of parameters: 4 id: 2171 unit: calculateSize() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/collapsed-tree.js start line: 235 end line: 249 size: 15 LOC McCabe index: 6 number of parameters: 0 id: 2172 unit: updateGraphics() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/canvas-graphics.js start line: 39 end line: 53 size: 15 LOC McCabe index: 4 number of parameters: 2 id: 2173 unit: append() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/index.js start line: 61 end line: 75 size: 15 LOC McCabe index: 6 number of parameters: 3 id: 2174 unit: initialize() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 96 end line: 110 size: 15 LOC McCabe index: 2 number of parameters: 0 id: 2175 unit: applyColorScheme() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 140 end line: 157 size: 15 LOC McCabe index: 2 number of parameters: 2 id: 2176 unit: getFullRebuildOptions() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 215 end line: 230 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 2177 unit: render() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 467 end line: 481 size: 15 LOC McCabe index: 4 number of parameters: 0 id: 2178 unit: constructor() file: client/client/modules/render/heatmap/viewport/index.js start line: 36 end line: 62 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 2179 unit: set minimumTickSize() file: client/client/modules/render/heatmap/viewport/heatmap-scale.js start line: 48 end line: 62 size: 15 LOC McCabe index: 5 number of parameters: 1 id: 2180 unit: ensureColorSchemeRenderer() file: client/client/modules/render/heatmap/heatmap-view.js start line: 329 end line: 347 size: 15 LOC McCabe index: 4 number of parameters: 0 id: 2181 unit: serialize() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 97 end line: 111 size: 15 LOC McCabe index: 5 number of parameters: 1 id: 2182 unit: manageViewports() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 88 end line: 102 size: 15 LOC McCabe index: 3 number of parameters: 1 id: 2183 unit: private void getItemFormat() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 145 end line: 158 size: 14 LOC McCabe index: 4 number of parameters: 2 id: 2184 unit: public boolean verifyIndex() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItemFormat.java start line: 171 end line: 184 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2185 unit: protected void addPropertyToConfigurationFile() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/simple/SetPropertyCommandHandler.java start line: 62 end line: 75 size: 14 LOC McCabe index: 2 number of parameters: 2 id: 2186 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/dataset/DatasetMovingHandler.java start line: 69 end line: 82 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2187 unit: private HttpRequestBase selectRequestType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 232 end line: 245 size: 14 LOC McCabe index: 5 number of parameters: 2 id: 2188 unit: protected Long parseFileId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 275 end line: 288 size: 14 LOC McCabe index: 5 number of parameters: 1 id: 2189 unit: protected BiologicalDataItem loadFileByNameOrBioID() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 299 end line: 312 size: 14 LOC McCabe index: 5 number of parameters: 1 id: 2190 unit: public EhCacheFactoryBean ehCacheFactoryBean() file: server/catgenome/src/main/java/com/epam/catgenome/app/AclSecurityConfiguration.java start line: 154 end line: 167 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2191 unit: public SAMLContextProviderImpl contextProvider() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 268 end line: 281 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2192 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 86 end line: 102 size: 14 LOC McCabe index: 8 number of parameters: 1 id: 2193 unit: private static int findPositionBeforeClosingBracket() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/RegexReverser.java start line: 60 end line: 73 size: 14 LOC McCabe index: 5 number of parameters: 2 id: 2194 unit: private static int findPositionAfterOpeningBracket() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/RegexReverser.java start line: 87 end line: 100 size: 14 LOC McCabe index: 5 number of parameters: 2 id: 2195 unit: public Motif next() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/ReversingRegexMotifSearchIterator.java start line: 74 end line: 87 size: 14 LOC McCabe index: 6 number of parameters: 0 id: 2196 unit: public List extractHeaderFromLine() file: server/catgenome/src/main/java/com/epam/catgenome/util/InfoFieldParser.java start line: 115 end line: 128 size: 14 LOC McCabe index: 4 number of parameters: 1 id: 2197 unit: public static String addFiltersToQuery() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 467 end line: 480 size: 14 LOC McCabe index: 7 number of parameters: 2 id: 2198 unit: public TribbleIndexedFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 89 end line: 105 size: 14 LOC McCabe index: 3 number of parameters: 4 id: 2199 unit: public Authentication authenticate() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtAuthenticationProvider.java start line: 45 end line: 58 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2200 unit: public LookupStrategyImpl() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 107 end line: 121 size: 14 LOC McCabe index: 1 number of parameters: 4 id: 2201 unit: public MutableAcl createAcl() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 62 end line: 84 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2202 unit: public GeneHighLevel() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneHighLevel.java start line: 84 end line: 99 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2203 unit: public Query computeQuery() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 98 end line: 111 size: 14 LOC McCabe index: 1 number of parameters: 0 id: 2204 unit: private void addPositionFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 131 end line: 144 size: 14 LOC McCabe index: 5 number of parameters: 1 id: 2205 unit: private void addAdditionalFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 146 end line: 159 size: 14 LOC McCabe index: 6 number of parameters: 2 id: 2206 unit: static RowMapper getPasswordRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/person/PersonDao.java start line: 153 end line: 169 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2207 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/activity/ActivityDao.java start line: 83 end line: 98 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2208 unit: static Activity parseActivity() file: server/catgenome/src/main/java/com/epam/catgenome/dao/activity/ActivityDao.java start line: 104 end line: 117 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2209 unit: private List getExistingNewGroups() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 277 end line: 290 size: 14 LOC McCabe index: 1 number of parameters: 3 id: 2210 unit: public List updateProjectNotes() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 399 end line: 412 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2211 unit: public void updateLineageTreePaths() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeDao.java start line: 84 end line: 97 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2212 unit: private ScoreDoc createIndexEntries() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/searcher/PagingSearcher.java start line: 76 end line: 90 size: 14 LOC McCabe index: 6 number of parameters: 6 id: 2213 unit: protected IndexSearchResult performSearch() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/searcher/NextPageSearcher.java start line: 60 end line: 74 size: 14 LOC McCabe index: 3 number of parameters: 5 id: 2214 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneDescDao.java start line: 116 end line: 129 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2215 unit: public Heatmap saveHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 92 end line: 105 size: 14 LOC McCabe index: 1 number of parameters: 5 id: 2216 unit: public Reference createReferenceGenome() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 176 end line: 190 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2217 unit: private static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 223 end line: 238 size: 14 LOC McCabe index: 1 number of parameters: 0 id: 2218 unit: public static MessageHelper singleton() file: server/catgenome/src/main/java/com/epam/catgenome/component/MessageHelper.java start line: 134 end line: 147 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2219 unit: private static void setGeneNames() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/UniprotConverter.java start line: 134 end line: 150 size: 14 LOC McCabe index: 5 number of parameters: 2 id: 2220 unit: public RefSeqGeneMapping getRefSeqGeneMapping() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 90 end line: 103 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2221 unit: private void sendNotification() file: server/catgenome/src/main/java/com/epam/catgenome/manager/UpdateItemPathManager.java start line: 211 end line: 224 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2222 unit: private String getNextContig() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 469 end line: 484 size: 14 LOC McCabe index: 4 number of parameters: 3 id: 2223 unit: private void parseAndSetBlockCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 189 end line: 202 size: 14 LOC McCabe index: 4 number of parameters: 3 id: 2224 unit: private String getResponse() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/GCPPaLM2.java start line: 170 end line: 183 size: 14 LOC McCabe index: 1 number of parameters: 3 id: 2225 unit: public boolean loadAndSetBounds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/TrackHelper.java start line: 131 end line: 147 size: 14 LOC McCabe index: 4 number of parameters: 3 id: 2226 unit: private String fetchRealChrName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/BedGraphProcessor.java start line: 154 end line: 167 size: 14 LOC McCabe index: 4 number of parameters: 2 id: 2227 unit: public BamCoverage create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageManager.java start line: 120 end line: 133 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2228 unit: private void readMrna() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceReconstructionManager.java start line: 365 end line: 378 size: 14 LOC McCabe index: 6 number of parameters: 2 id: 2229 unit: public NgbUser createUser() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 67 end line: 83 size: 14 LOC McCabe index: 1 number of parameters: 4 id: 2230 unit: public List findUsers() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 188 end line: 203 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2231 unit: public ExtendedRole assignRole() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 93 end line: 106 size: 14 LOC McCabe index: 2 number of parameters: 2 id: 2232 unit: public ExtendedRole removeRole() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 109 end line: 122 size: 14 LOC McCabe index: 2 number of parameters: 2 id: 2233 unit: protected Gene createCanonicalTranscript() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 555 end line: 569 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2234 unit: public GeneTrackManager() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneTrackManager.java start line: 78 end line: 91 size: 14 LOC McCabe index: 1 number of parameters: 8 id: 2235 unit: String encode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Codec.java start line: 58 end line: 73 size: 14 LOC McCabe index: 4 number of parameters: 1 id: 2236 unit: private Gff3FeatureImpl buildGffFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsToGffConvertor.java start line: 180 end line: 193 size: 14 LOC McCabe index: 1 number of parameters: 7 id: 2237 unit: private boolean addFeatureToTranscriptFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 492 end line: 507 size: 14 LOC McCabe index: 5 number of parameters: 1 id: 2238 unit: public GeneFile reindexGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 236 end line: 249 size: 14 LOC McCabe index: 3 number of parameters: 3 id: 2239 unit: private boolean checkNewProject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 537 end line: 555 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2240 unit: private void attachMetadataToItems() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 585 end line: 598 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2241 unit: private VcfFile getVcfFileFromGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 859 end line: 872 size: 14 LOC McCabe index: 1 number of parameters: 2 id: 2242 unit: private void writeTabixIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 969 end line: 982 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2243 unit: private Long getProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeManager.java start line: 183 end line: 196 size: 14 LOC McCabe index: 5 number of parameters: 1 id: 2244 unit: public IndexSearchResult getGeneSearchResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 409 end line: 422 size: 14 LOC McCabe index: 1 number of parameters: 2 id: 2245 unit: private List getFeatureFiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 756 end line: 770 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2246 unit: private JsonNode getIdsByTerm() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIAuxiliaryManager.java start line: 250 end line: 264 size: 14 LOC McCabe index: 2 number of parameters: 4 id: 2247 unit: public JsonNode summaryWithHistory() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 275 end line: 289 size: 14 LOC McCabe index: 2 number of parameters: 2 id: 2248 unit: public List fetchPubmedData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneManager.java start line: 105 end line: 118 size: 14 LOC McCabe index: 2 number of parameters: 3 id: 2249 unit: private Map getSmilesMap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pug/NCBIPugManager.java start line: 167 end line: 180 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2250 unit: private Query buildTaxonomySearchQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 176 end line: 189 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2251 unit: public SearchResult fetchPubMedArticles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/PubMedService.java start line: 99 end line: 113 size: 14 LOC McCabe index: 2 number of parameters: 2 id: 2252 unit: private Dataset parseToDataset() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbDataManager.java start line: 132 end line: 149 size: 14 LOC McCabe index: 1 number of parameters: 2 id: 2253 unit: public BlockCompressedOutputStream makeGeneBlockCompressedOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1376 end line: 1393 size: 14 LOC McCabe index: 2 number of parameters: 3 id: 2254 unit: public void updateLabelAnnotation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 124 end line: 137 size: 14 LOC McCabe index: 2 number of parameters: 4 id: 2255 unit: public void updateCellAnnotation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 140 end line: 153 size: 14 LOC McCabe index: 3 number of parameters: 3 id: 2256 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/GeneField.java start line: 51 end line: 64 size: 14 LOC McCabe index: 1 number of parameters: 0 id: 2257 unit: private static void write() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/ExportUtils.java start line: 55 end line: 68 size: 14 LOC McCabe index: 5 number of parameters: 4 id: 2258 unit: private void setData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileManager.java start line: 164 end line: 177 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2259 unit: public ReferenceSequence getSubsequenceAt() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/ChromosomeReferenceSequence.java start line: 120 end line: 133 size: 14 LOC McCabe index: 3 number of parameters: 3 id: 2260 unit: private void seekBCDISWithIndexFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 411 end line: 425 size: 14 LOC McCabe index: 2 number of parameters: 3 id: 2261 unit: private BiologicalDataItem fetchAnnotationFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 484 end line: 498 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2262 unit: isRoleModelEnabled() file: client/client/dataServices/utils/utils-data-service.js start line: 45 end line: 58 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2263 unit: checkSessionExpirationBehavior() file: client/client/dataServices/utils/utils-data-service.js start line: 60 end line: 73 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2264 unit: getOrganismList() file: client/client/dataServices/project/project-data-service.js start line: 162 end line: 175 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2265 unit: getBlastDBList() file: client/client/dataServices/project/project-data-service.js start line: 177 end line: 190 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2266 unit: getBlastHistoryLoad() file: client/client/dataServices/project/project-data-service.js start line: 192 end line: 205 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2267 unit: getBlastSearch() file: client/client/dataServices/project/project-data-service.js start line: 207 end line: 220 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2268 unit: getBlastResultLoad() file: client/client/dataServices/project/project-data-service.js start line: 222 end line: 235 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2269 unit: createBlastSearch() file: client/client/dataServices/project/project-data-service.js start line: 237 end line: 250 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2270 unit: deleteBlastSearchHistory() file: client/client/dataServices/project/project-data-service.js start line: 252 end line: 265 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2271 unit: cancelBlastSearch() file: client/client/dataServices/project/project-data-service.js start line: 267 end line: 280 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2272 unit: downloadBlastResults() file: client/client/dataServices/project/project-data-service.js start line: 282 end line: 295 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2273 unit: getFeatureCoordinates() file: client/client/dataServices/project/project-data-service.js start line: 311 end line: 324 size: 14 LOC McCabe index: 2 number of parameters: 3 id: 2274 unit: getDatasetFileInfo() file: client/client/dataServices/project/project-data-service.js start line: 342 end line: 355 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2275 unit: saveMetadata() file: client/client/dataServices/project/project-data-service.js start line: 357 end line: 370 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2276 unit: getMetadata() file: client/client/dataServices/project/project-data-service.js start line: 371 end line: 384 size: 14 LOC McCabe index: 2 number of parameters: 2 id: 2277 unit: static getVariantTranslation() file: client/client/dataServices/vcf/vcf-analyzer.js start line: 3 end line: 16 size: 14 LOC McCabe index: 7 number of parameters: 1 id: 2278 unit: static analyzePosition() file: client/client/dataServices/vcf/vcf-analyzer.js start line: 303 end line: 316 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2279 unit: set routeInfo() file: client/client/app/shared/targetContext/index.js start line: 81 end line: 94 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2280 unit: export function isEquivalent() file: client/client/app/shared/utils/Object.js start line: 1 end line: 24 size: 14 LOC McCabe index: 8 number of parameters: 2 id: 2281 unit: _bind() file: client/client/app/shared/eventHotkeys/index.js start line: 40 end line: 53 size: 14 LOC McCabe index: 4 number of parameters: 1 id: 2282 unit: fetchCurrentUserRolesData() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 122 end line: 135 size: 14 LOC McCabe index: 5 number of parameters: 1 id: 2283 unit: addUsersToGrid() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 131 end line: 144 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2284 unit: openEditUserDlg() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 194 end line: 209 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2285 unit: openCreateUserDlg() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 211 end line: 226 size: 14 LOC McCabe index: 1 number of parameters: 0 id: 2286 unit: trackFormat() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromUrl/ngbOpenFileFromUrl.controller.js start line: 80 end line: 93 size: 14 LOC McCabe index: 8 number of parameters: 0 id: 2287 unit: constructor() file: client/client/app/shared/components/ngbMainSettings/ngbGroupedCheckbox/ngbGroupedCheckbox.controller.js start line: 8 end line: 23 size: 14 LOC McCabe index: 4 number of parameters: 2 id: 2288 unit: export default function() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbCustomizationTableRow/ngbCustomizationTableRow.directive.js start line: 3 end line: 16 size: 14 LOC McCabe index: 1 number of parameters: 0 id: 2289 unit: export function headerButton() file: client/client/app/shared/components/ngbGoldenLayout/internal/goldenLayout.js start line: 151 end line: 167 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2290 unit: function analyzeExonStructure() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 1149 end line: 1162 size: 14 LOC McCabe index: 6 number of parameters: 4 id: 2291 unit: function analyzeDomainStructure() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 1164 end line: 1177 size: 14 LOC McCabe index: 8 number of parameters: 4 id: 2292 unit: getReadParts() file: client/client/app/shared/bisulfiteModeContext/index.js start line: 225 end line: 238 size: 14 LOC McCabe index: 4 number of parameters: 2 id: 2293 unit: refreshVcfFilterEmptyStatus() file: client/client/app/shared/projectContext/index.js start line: 1329 end line: 1342 size: 14 LOC McCabe index: 11 number of parameters: 0 id: 2294 unit: getCurrentStateObject() file: client/client/app/shared/projectContext/index.js start line: 1510 end line: 1523 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2295 unit: _changeBlatRegion() file: client/client/app/shared/projectContext/index.js start line: 2045 end line: 2060 size: 14 LOC McCabe index: 10 number of parameters: 1 id: 2296 unit: get summaryFalseValue() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoSections/ngbProjectInfoSections.controller.js start line: 65 end line: 78 size: 14 LOC McCabe index: 5 number of parameters: 0 id: 2297 unit: get defaultMode() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 258 end line: 271 size: 14 LOC McCabe index: 4 number of parameters: 0 id: 2298 unit: updateDiagram() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/nvd3-chart-controller.js start line: 18 end line: 31 size: 14 LOC McCabe index: 7 number of parameters: 3 id: 2299 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 144 end line: 157 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2300 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 102 end line: 115 size: 14 LOC McCabe index: 1 number of parameters: 0 id: 2301 unit: resetData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 404 end line: 417 size: 14 LOC McCabe index: 1 number of parameters: 0 id: 2302 unit: setGeneTrack() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 428 end line: 441 size: 14 LOC McCabe index: 6 number of parameters: 0 id: 2303 unit: setGeneTrack() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 158 end line: 171 size: 14 LOC McCabe index: 6 number of parameters: 0 id: 2304 unit: async searchPatentsByProteinName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 341 end line: 354 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2305 unit: async getTargetSettings() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.service.js start line: 45 end line: 58 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2306 unit: userAttributes: getUserAttributesString() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 272 end line: 288 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2307 unit: getParasiteTargetRequest() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 773 end line: 786 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2308 unit: addGene() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 205 end line: 218 size: 14 LOC McCabe index: 6 number of parameters: 0 id: 2309 unit: applyConfirmed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterRange/ngbTargetGenesFilterRange.controller.js start line: 70 end line: 83 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2310 unit: onColumnMoved() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 214 end line: 227 size: 14 LOC McCabe index: 4 number of parameters: 1 id: 2311 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 229 end line: 242 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2312 unit: setSortFromConfiguration() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 588 end line: 601 size: 14 LOC McCabe index: 4 number of parameters: 0 id: 2313 unit: async loadData() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.controller.js start line: 105 end line: 118 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2314 unit: async initialize() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 118 end line: 131 size: 14 LOC McCabe index: 1 number of parameters: 0 id: 2315 unit: async filterResults() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 363 end line: 376 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2316 unit: rowTemplate: require() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.controller.js start line: 74 end line: 87 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2317 unit: rowTemplate: require() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.controller.js start line: 74 end line: 87 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2318 unit: onRemove() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.controller.js start line: 195 end line: 210 size: 14 LOC McCabe index: 1 number of parameters: 2 id: 2319 unit: constructor() file: client/client/app/components/ngbDataSets/internal/ngbDataSetContextMenu/ngbDataSetContextMenu.controller.js start line: 11 end line: 24 size: 14 LOC McCabe index: 2 number of parameters: 7 id: 2320 unit: getSubjectDisplayType() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 160 end line: 173 size: 14 LOC McCabe index: 8 number of parameters: 0 id: 2321 unit: clearGenesFilter() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 541 end line: 554 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2322 unit: constructor() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 51 end line: 66 size: 14 LOC McCabe index: 1 number of parameters: 8 id: 2323 unit: async loadBlastSearchResult() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.service.js start line: 78 end line: 91 size: 14 LOC McCabe index: 4 number of parameters: 1 id: 2324 unit: constructor() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.controller.js start line: 45 end line: 60 size: 14 LOC McCabe index: 1 number of parameters: 5 id: 2325 unit: formatBlastTooltipContent() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastWholeGenomeView/ngbBlastWholeGenomeView.controller.js start line: 127 end line: 140 size: 14 LOC McCabe index: 4 number of parameters: 1 id: 2326 unit: initialize() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.controller.js start line: 70 end line: 83 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2327 unit: _getPureCanvas() file: client/client/app/components/ngbTracksView/managers/ngbTracksView.camera.manager.js start line: 86 end line: 103 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2328 unit: save() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbWigColorPreference/ngbWigColorPreference.controller.js start line: 65 end line: 78 size: 14 LOC McCabe index: 1 number of parameters: 0 id: 2329 unit: save() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackFontSize/ngbTrackFontSize.controller.js start line: 46 end line: 59 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2330 unit: onMinifiedHeaderMouseLeave() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 554 end line: 567 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2331 unit: onFileUpload() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 310 end line: 323 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2332 unit: function prepareAnnotationList() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.service.js start line: 96 end line: 109 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2333 unit: constructor() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysTableFilter.controller.js start line: 7 end line: 20 size: 14 LOC McCabe index: 2 number of parameters: 1 id: 2334 unit: saveLayout() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 373 end line: 387 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2335 unit: annotateNode() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 477 end line: 490 size: 14 LOC McCabe index: 5 number of parameters: 2 id: 2336 unit: saveLayout() file: client/client/app/components/ngbStrainLineage/ngbCytoscape/ngbCytoscape.controller.js start line: 242 end line: 256 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2337 unit: template: require() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.run.js start line: 99 end line: 112 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2338 unit: set height() file: client/client/modules/render/core/track/track.js start line: 414 end line: 429 size: 14 LOC McCabe index: 5 number of parameters: 1 id: 2339 unit: _onTouchBegan() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 42 end line: 56 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2340 unit: async _transformViewportScale() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 355 end line: 368 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2341 unit: selectInterval() file: client/client/modules/render/core/viewport/viewport.js start line: 353 end line: 381 size: 14 LOC McCabe index: 6 number of parameters: 1 id: 2342 unit: get chrRenderParams() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 111 end line: 124 size: 14 LOC McCabe index: 1 number of parameters: 0 id: 2343 unit: width: $() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 115 end line: 128 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 2344 unit: static buildTicks() file: client/client/modules/render/whole-genome-render/partials/scale/scaleTransformer.js start line: 5 end line: 20 size: 14 LOC McCabe index: 2 number of parameters: 2 id: 2345 unit: function buildScoresConfigs() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 12 end line: 31 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2346 unit: init() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 142 end line: 155 size: 14 LOC McCabe index: 1 number of parameters: 0 id: 2347 unit: _renderCoverage() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 484 end line: 497 size: 14 LOC McCabe index: 9 number of parameters: 2 id: 2348 unit: function _createSoftClipBaseRender() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 155 end line: 168 size: 14 LOC McCabe index: 3 number of parameters: 2 id: 2349 unit: function disableFeature() file: client/client/modules/render/tracks/gene/exterior/featuresMenu.js start line: 24 end line: 37 size: 14 LOC McCabe index: 7 number of parameters: 3 id: 2350 unit: animate() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/statisticsContainer.js start line: 107 end line: 120 size: 14 LOC McCabe index: 7 number of parameters: 1 id: 2351 unit: _rebuildMask() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/vcfRenderer.js start line: 64 end line: 77 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2352 unit: addAllelesDescriptions() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 199 end line: 213 size: 14 LOC McCabe index: 4 number of parameters: 1 id: 2353 unit: async initializeSamples() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 133 end line: 146 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2354 unit: function disableSource() file: client/client/modules/render/tracks/featureCounts/menu/sourcesMenu.js start line: 24 end line: 37 size: 14 LOC McCabe index: 7 number of parameters: 3 id: 2355 unit: onHover() file: client/client/modules/render/tracks/seg/index.js start line: 105 end line: 118 size: 14 LOC McCabe index: 3 number of parameters: 2 id: 2356 unit: render() file: client/client/modules/render/tracks/heatmap/index.js start line: 68 end line: 81 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2357 unit: init() file: client/client/modules/render/utilities/placeholderRenderer.js start line: 23 end line: 36 size: 14 LOC McCabe index: 5 number of parameters: 2 id: 2358 unit: static _findClosestDecimalDegree() file: client/client/modules/render/utilities/numberFormatter.js start line: 17 end line: 31 size: 14 LOC McCabe index: 4 number of parameters: 3 id: 2359 unit: onScroll() file: client/client/modules/render/heatmap/interactions/interactive-zone.js start line: 143 end line: 156 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2360 unit: get size() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 107 end line: 120 size: 14 LOC McCabe index: 7 number of parameters: 0 id: 2361 unit: initialize() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 183 end line: 196 size: 14 LOC McCabe index: 2 number of parameters: 0 id: 2362 unit: destroy() file: client/client/modules/render/heatmap/renderer/viewport-renderer/index.js start line: 63 end line: 76 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2363 unit: renderLabel() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 474 end line: 487 size: 14 LOC McCabe index: 5 number of parameters: 2 id: 2364 unit: holdsSingleValue() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/collapsed-tree.js start line: 206 end line: 219 size: 14 LOC McCabe index: 12 number of parameters: 0 id: 2365 unit: export function mergeMaps() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/helpers.js start line: 11 end line: 28 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2366 unit: rebuildAnimationFrame() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 179 end line: 192 size: 14 LOC McCabe index: 7 number of parameters: 0 id: 2367 unit: get width() file: client/client/modules/render/heatmap/renderer/color-scheme-renderer/index.js start line: 82 end line: 95 size: 14 LOC McCabe index: 3 number of parameters: 0 id: 2368 unit: initialize() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 35 end line: 48 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 2369 unit: set deviceSize() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 116 end line: 129 size: 14 LOC McCabe index: 6 number of parameters: 1 id: 2370 unit: navigateToReference() file: client/client/modules/render/heatmap/navigation/index.js start line: 255 end line: 268 size: 14 LOC McCabe index: 4 number of parameters: 1 id: 2371 unit: checkContainerSize() file: client/client/modules/render/heatmap/index.js start line: 62 end line: 75 size: 14 LOC McCabe index: 6 number of parameters: 0 id: 2372 unit: reloadAll() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 105 end line: 118 size: 14 LOC McCabe index: 1 number of parameters: 0 id: 2373 unit: function makeVector() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 16 end line: 29 size: 14 LOC McCabe index: 3 number of parameters: 2 id: 2374 unit: set() file: client/client/modules/render/heatmap/utilities/trie.js start line: 44 end line: 57 size: 14 LOC McCabe index: 3 number of parameters: 2 id: 2375 unit: formatData() file: client/client/modules/render/heatmap/utilities/heatmap-trie.js start line: 276 end line: 289 size: 14 LOC McCabe index: 2 number of parameters: 3 id: 2376 unit: static continuousCollection() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 252 end line: 265 size: 14 LOC McCabe index: 2 number of parameters: 3 id: 2377 unit: export function getChannels() file: client/client/modules/render/heatmap/color-scheme/helpers.js start line: 23 end line: 36 size: 14 LOC McCabe index: 2 number of parameters: 2 id: 2378 unit: export function useColumnsForSource() file: export-templates/target-identification/src/sections/associated-diseases/columns.ts start line: 38 end line: 51 size: 14 LOC McCabe index: 4 number of parameters: 1 id: 2379 unit: function renderTableDataRow() file: export-templates/target-identification/src/common/table/index.tsx start line: 163 end line: 176 size: 14 LOC McCabe index: 1 number of parameters: 3 id: 2380 unit: export function useGeneAndSpecies() file: export-templates/target-identification/src/model/main.ts start line: 133 end line: 146 size: 14 LOC McCabe index: 5 number of parameters: 1 id: 2381 unit: private void getItemFormat() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/heatmap/Heatmap.java start line: 98 end line: 110 size: 13 LOC McCabe index: 2 number of parameters: 2 id: 2382 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/species/SpeciesDeletionHandler.java start line: 74 end line: 86 size: 13 LOC McCabe index: 2 number of parameters: 0 id: 2383 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/blast/BlastDatabasesListHandler.java start line: 68 end line: 80 size: 13 LOC McCabe index: 4 number of parameters: 2 id: 2384 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/pathway/BioPAXRegistrationHandler.java start line: 58 end line: 70 size: 13 LOC McCabe index: 3 number of parameters: 2 id: 2385 unit: private static List preparePermissions() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/PrintPermissionsHelper.java start line: 100 end line: 112 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2386 unit: protected HttpPost buildMultipartRequest() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 216 end line: 230 size: 13 LOC McCabe index: 2 number of parameters: 2 id: 2387 unit: protected Role loadRoleByName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 550 end line: 562 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2388 unit: public ReversingRegexMotifSearchIterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/ReversingRegexMotifSearchIterator.java start line: 47 end line: 60 size: 13 LOC McCabe index: 1 number of parameters: 5 id: 2389 unit: public final long readLong() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataInputStream.java start line: 188 end line: 200 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 2390 unit: String writeHeader() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/VCFSorter.java start line: 50 end line: 65 size: 13 LOC McCabe index: 3 number of parameters: 2 id: 2391 unit: public static String addSortedSuffix() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/AbstractFeatureSorter.java start line: 140 end line: 157 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2392 unit: String writeHeader() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/GFFSorter.java start line: 49 end line: 63 size: 13 LOC McCabe index: 3 number of parameters: 2 id: 2393 unit: public static HeatmapDataType guessType() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 553 end line: 565 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2394 unit: public CloseableTribbleIterator query() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixFeatureReader.java start line: 152 end line: 164 size: 13 LOC McCabe index: 3 number of parameters: 3 id: 2395 unit: public EnhancedUrlHelper() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/EnhancedUrlHelper.java start line: 46 end line: 58 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 2396 unit: public static Index loadIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 508 end line: 521 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2397 unit: public AclSecuredEntry changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 162 end line: 174 size: 13 LOC McCabe index: 2 number of parameters: 3 id: 2398 unit: public StringBuffer getRequestURL() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLContextProviderCustomSignKey.java start line: 127 end line: 139 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2399 unit: private String switchProtocolIfRequired() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SchemeInsensitiveUrlComparator.java start line: 23 end line: 35 size: 13 LOC McCabe index: 3 number of parameters: 2 id: 2400 unit: public GeneHighLevel() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneHighLevel.java start line: 65 end line: 79 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 2401 unit: public void clearForReadOnlyView() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 121 end line: 135 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2402 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/person/PersonDao.java start line: 136 end line: 151 size: 13 LOC McCabe index: 2 number of parameters: 0 id: 2403 unit: public void hideProjectItems() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 567 end line: 583 size: 13 LOC McCabe index: 3 number of parameters: 2 id: 2404 unit: public void updateSamples() file: server/catgenome/src/main/java/com/epam/catgenome/dao/vcf/VcfFileDao.java start line: 180 end line: 192 size: 13 LOC McCabe index: 2 number of parameters: 2 id: 2405 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeNodeDao.java start line: 126 end line: 138 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2406 unit: private static BytesRef pack() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedIntPoint.java start line: 86 end line: 100 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 2407 unit: private static BytesRef pack() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedFloatPoint.java start line: 75 end line: 89 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 2408 unit: private static BytesRef pack() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedSetFloatPoint.java start line: 76 end line: 90 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 2409 unit: private GeneIndexEntry buildGeneIndexEntry() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 1221 end line: 1233 size: 13 LOC McCabe index: 1 number of parameters: 2 id: 2410 unit: protected Set getRequiredFields() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/DefaultDocumentBuilder.java start line: 40 end line: 52 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 2411 unit: public void updateLabelAnnotation() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 157 end line: 170 size: 13 LOC McCabe index: 1 number of parameters: 4 id: 2412 unit: private static void parseSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 627 end line: 639 size: 13 LOC McCabe index: 3 number of parameters: 2 id: 2413 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 122 end line: 134 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 2414 unit: private static Long getBioDataItemId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/ProjectConverter.java start line: 193 end line: 205 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 2415 unit: private void processRegistration() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafManager.java start line: 223 end line: 235 size: 13 LOC McCabe index: 2 number of parameters: 3 id: 2416 unit: public static int splitFileReadingInterval() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/ParallelTaskExecutionUtils.java start line: 67 end line: 79 size: 13 LOC McCabe index: 3 number of parameters: 4 id: 2417 unit: public ExecutorService getExecutorService() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TaskExecutorService.java start line: 88 end line: 100 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2418 unit: private void processBiologicalDataItem() file: server/catgenome/src/main/java/com/epam/catgenome/manager/UpdateItemPathManager.java start line: 110 end line: 122 size: 13 LOC McCabe index: 2 number of parameters: 5 id: 2419 unit: private String getNewPath() file: server/catgenome/src/main/java/com/epam/catgenome/manager/UpdateItemPathManager.java start line: 188 end line: 200 size: 13 LOC McCabe index: 5 number of parameters: 4 id: 2420 unit: private void parseAndSetStrand() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 228 end line: 241 size: 13 LOC McCabe index: 5 number of parameters: 3 id: 2421 unit: public BedGraphFeature decode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphCodec.java start line: 68 end line: 83 size: 13 LOC McCabe index: 5 number of parameters: 1 id: 2422 unit: public WigFile delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigFileManager.java start line: 114 end line: 127 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2423 unit: public void delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageManager.java start line: 136 end line: 148 size: 13 LOC McCabe index: 3 number of parameters: 2 id: 2424 unit: public Track calculateConsensusSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 167 end line: 181 size: 13 LOC McCabe index: 1 number of parameters: 2 id: 2425 unit: private void coverageAdd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 297 end line: 309 size: 13 LOC McCabe index: 6 number of parameters: 4 id: 2426 unit: public List computeDifferentBase() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 323 end line: 336 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2427 unit: protected ReadBaseProcessor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 353 end line: 365 size: 13 LOC McCabe index: 1 number of parameters: 7 id: 2428 unit: private void processMatch() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 441 end line: 454 size: 13 LOC McCabe index: 5 number of parameters: 2 id: 2429 unit: private Gene lookForGene() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceManager.java start line: 308 end line: 320 size: 13 LOC McCabe index: 6 number of parameters: 3 id: 2430 unit: private ArrayList removeCdsDuplicates() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceManager.java start line: 427 end line: 440 size: 13 LOC McCabe index: 3 number of parameters: 2 id: 2431 unit: private List getNewUserRoles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 85 end line: 97 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2432 unit: public GffFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 85 end line: 97 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 2433 unit: public GffFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 99 end line: 111 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2434 unit: protected String parseGroupId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 172 end line: 184 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 2435 unit: protected String parseGroupId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GtfFeature.java start line: 67 end line: 80 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 2436 unit: private Set getDescendents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 139 end line: 152 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2437 unit: private void writeFirstEightFields() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 68 end line: 80 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2438 unit: private Gff3FeatureImpl buildTranscriptGffFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsToGffConvertor.java start line: 143 end line: 155 size: 13 LOC McCabe index: 1 number of parameters: 7 id: 2439 unit: private void initializeHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 366 end line: 379 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 2440 unit: private void setProteinSequences() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 590 end line: 602 size: 13 LOC McCabe index: 5 number of parameters: 3 id: 2441 unit: private void fillMinMax() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 943 end line: 955 size: 13 LOC McCabe index: 3 number of parameters: 2 id: 2442 unit: private Map getSampleNameToOffset() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 793 end line: 805 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2443 unit: private VcfFile downloadVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 874 end line: 887 size: 13 LOC McCabe index: 3 number of parameters: 5 id: 2444 unit: private void checkSorted() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 889 end line: 901 size: 13 LOC McCabe index: 4 number of parameters: 3 id: 2445 unit: public VcfFile delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfFileManager.java start line: 142 end line: 156 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 2446 unit: public int getTotalPagesCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 284 end line: 297 size: 13 LOC McCabe index: 2 number of parameters: 2 id: 2447 unit: public static void setGeneSpeciesNames() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 388 end line: 400 size: 13 LOC McCabe index: 3 number of parameters: 2 id: 2448 unit: public static void setEnsemblIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 424 end line: 436 size: 13 LOC McCabe index: 3 number of parameters: 2 id: 2449 unit: private Search getSearch() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/GooglePatentManager.java start line: 108 end line: 120 size: 13 LOC McCabe index: 1 number of parameters: 3 id: 2450 unit: private Map getMetaInfo() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/GooglePatentManager.java start line: 122 end line: 134 size: 13 LOC McCabe index: 3 number of parameters: 2 id: 2451 unit: public static VariationType convertVariationType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIShortVarManager.java start line: 203 end line: 218 size: 13 LOC McCabe index: 5 number of parameters: 1 id: 2452 unit: public JsonNode summaryEntitiesByIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 258 end line: 273 size: 13 LOC McCabe index: 2 number of parameters: 2 id: 2453 unit: public String fetchExternalId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneManager.java start line: 263 end line: 276 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2454 unit: private void parseJsonFromPubmed() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneManager.java start line: 282 end line: 294 size: 13 LOC McCabe index: 4 number of parameters: 3 id: 2455 unit: private String parseSmiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pug/NCBIPugManager.java start line: 153 end line: 165 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2456 unit: public void importHomologData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homolog/HomologManager.java start line: 182 end line: 194 size: 13 LOC McCabe index: 1 number of parameters: 2 id: 2457 unit: private Map getTranscriptDescriptions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/sequence/NCBISequenceManager.java start line: 139 end line: 151 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2458 unit: private StructureRequest totalCountRequest() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbEntriesManager.java start line: 237 end line: 249 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 2459 unit: public TaskPage loadCurrentUserTasks() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 172 end line: 184 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 2460 unit: public void cancelTask() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 196 end line: 208 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 2461 unit: private Collection groupResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 283 end line: 295 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2462 unit: public void importData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 145 end line: 157 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2463 unit: public Sort getSort() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 179 end line: 191 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2464 unit: private NGBPathway getPathway() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 526 end line: 538 size: 13 LOC McCabe index: 1 number of parameters: 2 id: 2465 unit: public static S3Manager singleton() file: server/catgenome/src/main/java/com/epam/catgenome/manager/aws/S3Manager.java start line: 92 end line: 104 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2466 unit: private SegFile registerSegFromURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegManager.java start line: 194 end line: 206 size: 13 LOC McCabe index: 3 number of parameters: 2 id: 2467 unit: private void readSegFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegManager.java start line: 257 end line: 269 size: 13 LOC McCabe index: 3 number of parameters: 4 id: 2468 unit: public BlockCompressedDataOutputStream makeRefOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 539 end line: 555 size: 13 LOC McCabe index: 1 number of parameters: 2 id: 2469 unit: public BlockCompressedDataOutputStream makeGCOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 566 end line: 579 size: 13 LOC McCabe index: 1 number of parameters: 2 id: 2470 unit: private BlockCompressedDataInputStream makeBlockCompressedDataInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 671 end line: 686 size: 13 LOC McCabe index: 1 number of parameters: 3 id: 2471 unit: public void writeHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1055 end line: 1068 size: 13 LOC McCabe index: 2 number of parameters: 3 id: 2472 unit: public PositionalOutputStream makePositionalOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1403 end line: 1419 size: 13 LOC McCabe index: 2 number of parameters: 3 id: 2473 unit: private HeatmapTreeNode convertTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 239 end line: 251 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2474 unit: public Reference load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 187 end line: 202 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2475 unit: private void verifyNextOrPrevSearchRequest() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 248 end line: 260 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2476 unit: getBamCoverage() file: client/client/dataServices/bam/bam-data-service.js start line: 300 end line: 312 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2477 unit: downloadFile() file: client/client/dataServices/data-service.js start line: 133 end line: 145 size: 13 LOC McCabe index: 3 number of parameters: 4 id: 2478 unit: getRawFile() file: client/client/dataServices/data-service.js start line: 147 end line: 159 size: 13 LOC McCabe index: 3 number of parameters: 4 id: 2479 unit: function extractAsArray() file: client/client/dataServices/utils/highlight-condition-service.js start line: 322 end line: 334 size: 13 LOC McCabe index: 5 number of parameters: 1 id: 2480 unit: getAminoAcids() file: client/client/dataServices/gene/gene-data-service.js start line: 160 end line: 172 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2481 unit: saveProject() file: client/client/dataServices/project/project-data-service.js start line: 98 end line: 110 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2482 unit: loadGenes() file: client/client/dataServices/genome/genome-data-service.js start line: 114 end line: 126 size: 13 LOC McCabe index: 2 number of parameters: 2 id: 2483 unit: getGenesInfo() file: client/client/dataServices/genome/genome-data-service.js start line: 128 end line: 140 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2484 unit: filterGeneValues() file: client/client/dataServices/genome/genome-data-service.js start line: 142 end line: 154 size: 13 LOC McCabe index: 2 number of parameters: 3 id: 2485 unit: getGeneInfo() file: client/client/dataServices/genome/genome-data-service.js start line: 182 end line: 194 size: 13 LOC McCabe index: 2 number of parameters: 2 id: 2486 unit: getHomologeneLoad() file: client/client/dataServices/genome/genome-data-service.js start line: 196 end line: 208 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2487 unit: getOrthoParaLoad() file: client/client/dataServices/genome/genome-data-service.js start line: 226 end line: 238 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2488 unit: getSpeciesList() file: client/client/dataServices/genome/genome-data-service.js start line: 240 end line: 252 size: 13 LOC McCabe index: 2 number of parameters: 0 id: 2489 unit: getInternalPathwaysLoad() file: client/client/dataServices/genome/genome-data-service.js start line: 254 end line: 267 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2490 unit: loadPathwayFileById() file: client/client/dataServices/genome/genome-data-service.js start line: 269 end line: 281 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2491 unit: getAllLineageTrees() file: client/client/dataServices/genome/genome-data-service.js start line: 283 end line: 295 size: 13 LOC McCabe index: 2 number of parameters: 0 id: 2492 unit: getLineageTreesByReference() file: client/client/dataServices/genome/genome-data-service.js start line: 297 end line: 309 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2493 unit: getLineageTreeById() file: client/client/dataServices/genome/genome-data-service.js start line: 311 end line: 323 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2494 unit: constructor() file: client/client/app/shared/heatmapContext/index.js start line: 8 end line: 20 size: 13 LOC McCabe index: 1 number of parameters: 2 id: 2495 unit: open() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.builder.js start line: 33 end line: 45 size: 13 LOC McCabe index: 4 number of parameters: 2 id: 2496 unit: bindController() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.builder.js start line: 47 end line: 59 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 2497 unit: usersSearchChanged() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 103 end line: 116 size: 13 LOC McCabe index: 7 number of parameters: 0 id: 2498 unit: groupsSearchChanged() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 118 end line: 131 size: 13 LOC McCabe index: 7 number of parameters: 0 id: 2499 unit: rolesSearchChanged() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 179 end line: 192 size: 13 LOC McCabe index: 7 number of parameters: 0 id: 2500 unit: function getDisplayDirectory() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 8 end line: 20 size: 13 LOC McCabe index: 6 number of parameters: 3 id: 2501 unit: function getInitialPlacement() file: client/client/app/shared/components/ngbFloatingPanel/placement.js start line: 8 end line: 20 size: 13 LOC McCabe index: 5 number of parameters: 1 id: 2502 unit: updateHeaderView() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 105 end line: 117 size: 13 LOC McCabe index: 8 number of parameters: 1 id: 2503 unit: changeAffectedTranscript() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 311 end line: 324 size: 13 LOC McCabe index: 5 number of parameters: 2 id: 2504 unit: static trimArray() file: client/client/app/shared/components/ngbVariantDetails/utilities/ngbVariantDetails.utilities.js start line: 18 end line: 30 size: 13 LOC McCabe index: 3 number of parameters: 3 id: 2505 unit: unregisterTrackInstance() file: client/client/app/shared/projectContext/index.js start line: 569 end line: 581 size: 13 LOC McCabe index: 6 number of parameters: 1 id: 2506 unit: set collapsedTrackHeaders() file: client/client/app/shared/projectContext/index.js start line: 708 end line: 720 size: 13 LOC McCabe index: 5 number of parameters: 1 id: 2507 unit: _changeChromosome() file: client/client/app/shared/projectContext/index.js start line: 1998 end line: 2010 size: 13 LOC McCabe index: 5 number of parameters: 1 id: 2508 unit: deleteNote() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 467 end line: 479 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2509 unit: getTrackFileName() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbProjectSummary/ngbProjectSummary.controller.js start line: 176 end line: 188 size: 13 LOC McCabe index: 5 number of parameters: 1 id: 2510 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 130 end line: 142 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 2511 unit: setList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 43 end line: 55 size: 13 LOC McCabe index: 4 number of parameters: 0 id: 2512 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbDiseasesTargetsFilterList.controller.js start line: 17 end line: 30 size: 13 LOC McCabe index: 3 number of parameters: 4 id: 2513 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 130 end line: 142 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 2514 unit: getDiseaseTotalCounts() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 129 end line: 141 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 2515 unit: onCloseSelector() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 191 end line: 203 size: 13 LOC McCabe index: 4 number of parameters: 0 id: 2516 unit: template: require() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPluralText/ngbPluralText.component.js start line: 8 end line: 20 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 2517 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 7 end line: 19 size: 13 LOC McCabe index: 1 number of parameters: 4 id: 2518 unit: getDiseasesOntology() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 224 end line: 236 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2519 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 121 end line: 133 size: 13 LOC McCabe index: 1 number of parameters: 4 id: 2520 unit: setList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 46 end line: 58 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2521 unit: onChangeGene() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 228 end line: 240 size: 13 LOC McCabe index: 4 number of parameters: 2 id: 2522 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 4 end line: 16 size: 13 LOC McCabe index: 1 number of parameters: 4 id: 2523 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 69 end line: 81 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 2524 unit: get structureModelChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 213 end line: 225 size: 13 LOC McCabe index: 10 number of parameters: 0 id: 2525 unit: get sequenceModelChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 175 end line: 187 size: 13 LOC McCabe index: 10 number of parameters: 0 id: 2526 unit: async getTableResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 327 end line: 339 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2527 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 69 end line: 81 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 2528 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 110 end line: 122 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 2529 unit: checkUserRole() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetContextMenu.controller.js start line: 23 end line: 35 size: 13 LOC McCabe index: 2 number of parameters: 0 id: 2530 unit: function isIdentificationLaunched() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetSavedIdentificationsDialog/ngbTargetSavedIdentificationsDialog.run.js start line: 179 end line: 191 size: 13 LOC McCabe index: 4 number of parameters: 2 id: 2531 unit: async loadData() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 259 end line: 271 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2532 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 21 end line: 33 size: 13 LOC McCabe index: 2 number of parameters: 4 id: 2533 unit: setList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 35 end line: 47 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2534 unit: function getGenesRequest() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetLaunchDialog/ngbLaunchMenuInput/ngbLaunchMenuInput.directive.js start line: 107 end line: 119 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2535 unit: targetInfoChanged() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 226 end line: 238 size: 13 LOC McCabe index: 7 number of parameters: 0 id: 2536 unit: isSomeAdditionalGeneEmpty() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 266 end line: 278 size: 13 LOC McCabe index: 6 number of parameters: 0 id: 2537 unit: setTargetGenesFields() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 973 end line: 985 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 2538 unit: onChangeType() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 240 end line: 252 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2539 unit: confirmRestoreDialog() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 700 end line: 712 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 2540 unit: set columnsInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 122 end line: 134 size: 13 LOC McCabe index: 5 number of parameters: 1 id: 2541 unit: get tableResults() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 208 end line: 220 size: 13 LOC McCabe index: 7 number of parameters: 0 id: 2542 unit: onClickRestore() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsFormActions/ngbTargetsFormActions.controller.js start line: 61 end line: 73 size: 13 LOC McCabe index: 2 number of parameters: 0 id: 2543 unit: export default function run() file: client/client/app/components/ngbMotifsPanel/ngbMotifsDialog.run.js start line: 1 end line: 36 size: 13 LOC McCabe index: 1 number of parameters: 3 id: 2544 unit: static instance() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 118 end line: 130 size: 13 LOC McCabe index: 1 number of parameters: 4 id: 2545 unit: constructor() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTablePaginate/ngbBookmarksTablePaginate.controller.js start line: 13 end line: 28 size: 13 LOC McCabe index: 1 number of parameters: 4 id: 2546 unit: itemIsSelected() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbBookmarksFilterList.controller.js start line: 135 end line: 147 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2547 unit: link: function() file: client/client/app/components/ngbDataSets/internal/ngbDataSets.indeterminateCheckbox.js start line: 4 end line: 18 size: 13 LOC McCabe index: 3 number of parameters: 3 id: 2548 unit: updateTerminalNodeStateFn() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 129 end line: 141 size: 13 LOC McCabe index: 5 number of parameters: 1 id: 2549 unit: rowTemplate: require() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 114 end line: 126 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 2550 unit: apply() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterCheckbox/ngbVariantsFilterCheckbox.controller.js start line: 21 end line: 33 size: 13 LOC McCabe index: 4 number of parameters: 0 id: 2551 unit: constructor() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTablePaginate/ngbVariantsTablePaginate.controller.js start line: 13 end line: 28 size: 13 LOC McCabe index: 1 number of parameters: 4 id: 2552 unit: resetInfo() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 187 end line: 199 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 2553 unit: setCurrentCoverageIndex() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 118 end line: 130 size: 13 LOC McCabe index: 5 number of parameters: 0 id: 2554 unit: constructor() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/ngbBlastSearchForm.controller.js start line: 69 end line: 83 size: 13 LOC McCabe index: 1 number of parameters: 6 id: 2555 unit: async getDBList() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/ngbBlastSearchForm.controller.js start line: 160 end line: 172 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2556 unit: calculateDiff() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.controller.js start line: 85 end line: 97 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2557 unit: save() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbMotifsColorPreference/ngbMotifsColorPreference.controller.js start line: 54 end line: 66 size: 13 LOC McCabe index: 2 number of parameters: 0 id: 2558 unit: constructor() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackResizePreference/ngbTrackResizePreference.controller.js start line: 8 end line: 23 size: 13 LOC McCabe index: 2 number of parameters: 3 id: 2559 unit: export default function run() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackResizePreference/ngbTrackResizePreference.run.js start line: 3 end line: 16 size: 13 LOC McCabe index: 3 number of parameters: 3 id: 2560 unit: onTrackItemClick() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 369 end line: 381 size: 13 LOC McCabe index: 4 number of parameters: 3 id: 2561 unit: onMouseUp() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbInternalPathwayNode.controller.js start line: 74 end line: 86 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 2562 unit: onMouseUp() file: client/client/app/components/ngbStrainLineage/ngbStrainLineageNode/ngbStrainLineageNode.controller.js start line: 47 end line: 59 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 2563 unit: $onChanges() file: client/client/app/components/ngbStrainLineage/ngbCytoscape/ngbCytoscape.controller.js start line: 76 end line: 88 size: 13 LOC McCabe index: 8 number of parameters: 1 id: 2564 unit: constructTreeList() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.controller.js start line: 90 end line: 102 size: 13 LOC McCabe index: 5 number of parameters: 2 id: 2565 unit: async homeUrlChanged() file: client/client/app/components/ngbBrowser/ngbBrowser.controller.js start line: 57 end line: 69 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2566 unit: globalSettingsChanged() file: client/client/modules/render/core/track/track.js start line: 431 end line: 443 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2567 unit: onDoubleClick() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 229 end line: 241 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 2568 unit: get flags() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 97 end line: 109 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2569 unit: height: $() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 116 end line: 128 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 2570 unit: height: $() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 130 end line: 143 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 2571 unit: _getYValue() file: client/client/modules/render/tracks/wig/wigRenderer.js start line: 389 end line: 401 size: 13 LOC McCabe index: 2 number of parameters: 2 id: 2572 unit: get alignmentsDrawingTopMargin() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 163 end line: 175 size: 13 LOC McCabe index: 6 number of parameters: 0 id: 2573 unit: getNextRead() file: client/client/modules/render/tracks/bam/internal/transformers/layoutReads.js start line: 68 end line: 80 size: 13 LOC McCabe index: 6 number of parameters: 1 id: 2574 unit: initializeMatches() file: client/client/modules/render/tracks/motifs/motifsMatchesRenderer.js start line: 27 end line: 39 size: 13 LOC McCabe index: 3 number of parameters: 2 id: 2575 unit: static transformFullHistogramData() file: client/client/modules/render/tracks/gene/internal/data/geneTransformer.js start line: 48 end line: 60 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2576 unit: function perform() file: client/client/modules/render/tracks/gene/exterior/duplicateMenu.js start line: 1 end line: 13 size: 13 LOC McCabe index: 2 number of parameters: 2 id: 2577 unit: function resizePerform() file: client/client/modules/render/tracks/common/menu/resize.js start line: 1 end line: 13 size: 13 LOC McCabe index: 5 number of parameters: 2 id: 2578 unit: function getCoverageExtremum() file: client/client/modules/render/tracks/common/scaleModes/menuHelpers.js start line: 56 end line: 68 size: 13 LOC McCabe index: 7 number of parameters: 2 id: 2579 unit: registerFeature() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/interChromosomeFeatureRenderer.js start line: 114 end line: 126 size: 13 LOC McCabe index: 1 number of parameters: 3 id: 2580 unit: isHovers() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/statisticsContainer.js start line: 93 end line: 105 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2581 unit: isHovers() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 510 end line: 522 size: 13 LOC McCabe index: 5 number of parameters: 1 id: 2582 unit: canScroll() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 207 end line: 219 size: 13 LOC McCabe index: 5 number of parameters: 1 id: 2583 unit: get stateKeys() file: client/client/modules/render/tracks/featureCounts/index.js start line: 75 end line: 87 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 2584 unit: getTooltipDataObject() file: client/client/modules/render/tracks/featureCounts/index.js start line: 206 end line: 218 size: 13 LOC McCabe index: 7 number of parameters: 2 id: 2585 unit: constructor() file: client/client/modules/render/tracks/blast/index.js start line: 21 end line: 33 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 2586 unit: constructor() file: client/client/modules/render/tracks/comparison/index.js start line: 21 end line: 33 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 2587 unit: render() file: client/client/modules/render/tracks/seg/index.js start line: 61 end line: 73 size: 13 LOC McCabe index: 9 number of parameters: 1 id: 2588 unit: scrollIndicatorBoundaries() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 129 end line: 141 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2589 unit: render() file: client/client/modules/render/tracks/reference/index.js start line: 107 end line: 120 size: 13 LOC McCabe index: 8 number of parameters: 1 id: 2590 unit: export function findMenuItem() file: client/client/modules/render/utilities/menu/findMenuItem.js start line: 1 end line: 13 size: 13 LOC McCabe index: 5 number of parameters: 2 id: 2591 unit: destroy() file: client/client/modules/render/heatmap/renderer/heatmap-options-renderer/index.js start line: 63 end line: 75 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2592 unit: destroy() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/binary-tree-graphics.js start line: 131 end line: 143 size: 13 LOC McCabe index: 2 number of parameters: 0 id: 2593 unit: onClick() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 177 end line: 189 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2594 unit: get axisSize() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 120 end line: 132 size: 13 LOC McCabe index: 6 number of parameters: 0 id: 2595 unit: get labelExtraRotation() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 146 end line: 158 size: 13 LOC McCabe index: 5 number of parameters: 0 id: 2596 unit: constructor() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 137 end line: 153 size: 13 LOC McCabe index: 2 number of parameters: 2 id: 2597 unit: onClick() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 425 end line: 437 size: 13 LOC McCabe index: 7 number of parameters: 1 id: 2598 unit: join() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/collapsed-tree.js start line: 221 end line: 233 size: 13 LOC McCabe index: 4 number of parameters: 0 id: 2599 unit: getFullRebuildOptions() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/canvas-graphics.js start line: 55 end line: 67 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 2600 unit: getPartialRebuildOptions() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/canvas-graphics.js start line: 69 end line: 81 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 2601 unit: build() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry.js start line: 114 end line: 130 size: 13 LOC McCabe index: 4 number of parameters: 2 id: 2602 unit: destroy() file: client/client/modules/render/heatmap/renderer/color-scheme-renderer/index.js start line: 68 end line: 80 size: 13 LOC McCabe index: 3 number of parameters: 0 id: 2603 unit: add() file: client/client/modules/render/heatmap/animation/animation-set.js start line: 14 end line: 26 size: 13 LOC McCabe index: 2 number of parameters: 3 id: 2604 unit: parse() file: client/client/modules/render/heatmap/heatmap-data/heatmap-data-type.js start line: 24 end line: 36 size: 13 LOC McCabe index: 8 number of parameters: 1 id: 2605 unit: setHeatMapItem() file: client/client/modules/render/heatmap/utilities/heatmap-trie.js start line: 247 end line: 259 size: 13 LOC McCabe index: 1 number of parameters: 4 id: 2606 unit: renderHeatmap() file: client/client/modules/render/heatmap/heatmap-view.js start line: 568 end line: 580 size: 13 LOC McCabe index: 2 number of parameters: 1 id: 2607 unit: set dataType() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 191 end line: 203 size: 13 LOC McCabe index: 6 number of parameters: 1 id: 2608 unit: r: interpolate() file: client/client/modules/render/heatmap/color-scheme/helpers.js start line: 73 end line: 86 size: 13 LOC McCabe index: 3 number of parameters: 3 id: 2609 unit: onDragEnd() file: client/client/modules/render/variant-render/renderers/interaction/drag-manager.js start line: 51 end line: 63 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2610 unit: onDragMove() file: client/client/modules/render/variant-render/renderers/interaction/drag-manager.js start line: 65 end line: 77 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2611 unit: export function App() file: export-templates/target-identification/src/index.tsx start line: 10 end line: 22 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 2612 unit: export function useSequencesReference() file: export-templates/target-identification/src/model/main.ts start line: 103 end line: 115 size: 13 LOC McCabe index: 5 number of parameters: 1 id: 2613 unit: function clearFilterValues() file: export-templates/target-identification/src/model/filtered-data.ts start line: 169 end line: 181 size: 13 LOC McCabe index: 3 number of parameters: 1 id: 2614 unit: function filterDataItemUsingNumberFilter() file: export-templates/target-identification/src/model/filtered-data.ts start line: 183 end line: 195 size: 13 LOC McCabe index: 6 number of parameters: 2 id: 2615 unit: export function isFilterSpecified() file: export-templates/target-identification/src/model/filtered-data.ts start line: 226 end line: 238 size: 13 LOC McCabe index: 6 number of parameters: 1 id: 2616 unit: public File getConfigFile() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/ConfigurationLoader.java start line: 162 end line: 174 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2617 unit: public String formatItem() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/heatmap/Heatmap.java start line: 79 end line: 90 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2618 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/dataset/DatasetItemDeletionHandler.java start line: 69 end line: 80 size: 12 LOC McCabe index: 3 number of parameters: 2 id: 2619 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/lineage/LineageTreeRegistrationHandler.java start line: 55 end line: 66 size: 12 LOC McCabe index: 2 number of parameters: 2 id: 2620 unit: protected void runDeletion() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 453 end line: 464 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2621 unit: protected T getResult() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 580 end line: 591 size: 12 LOC McCabe index: 3 number of parameters: 2 id: 2622 unit: protected void addOrDeleteItemsFromDataset() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 659 end line: 670 size: 12 LOC McCabe index: 3 number of parameters: 4 id: 2623 unit: protected UserContext loadCurrentUser() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 733 end line: 744 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2624 unit: public RoleHierarchy roleHierarchy() file: server/catgenome/src/main/java/com/epam/catgenome/app/AclSecurityConfiguration.java start line: 98 end line: 112 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2625 unit: private void readNextFeature() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureIterator.java start line: 199 end line: 210 size: 12 LOC McCabe index: 4 number of parameters: 0 id: 2626 unit: private static void moveInvertingRegexpCharacter() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/RegexReverser.java start line: 47 end line: 58 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2627 unit: public void encode() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/SortableRecordCodec.java start line: 59 end line: 71 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2628 unit: private void recreateInnerStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobSeekableStream.java start line: 45 end line: 57 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2629 unit: private String buildBlobDownloadUrl() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 223 end line: 234 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2630 unit: public static String getPathFromHash() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 246 end line: 257 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2631 unit: public static String addSortInfoToQuery() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 494 end line: 505 size: 12 LOC McCabe index: 6 number of parameters: 2 id: 2632 unit: public static Map parseAttributes() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 507 end line: 518 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2633 unit: private void recreateInnerStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3SeekableStream.java start line: 45 end line: 57 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2634 unit: public static boolean hasBlockCompressedExtension() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractEnhancedFeatureReader.java start line: 142 end line: 153 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2635 unit: public TabixReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 183 end line: 194 size: 12 LOC McCabe index: 2 number of parameters: 4 id: 2636 unit: public static String readLine() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 243 end line: 254 size: 12 LOC McCabe index: 4 number of parameters: 1 id: 2637 unit: private void loadIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 176 end line: 188 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2638 unit: private SeekableStream getSeekableStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 200 end line: 213 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2639 unit: private void readNextFeature() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 348 end line: 359 size: 12 LOC McCabe index: 4 number of parameters: 0 id: 2640 unit: private static void addBlockToHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/util/HistogramUtils.java start line: 121 end line: 132 size: 12 LOC McCabe index: 4 number of parameters: 2 id: 2641 unit: public List getAuthorities() file: server/catgenome/src/main/java/com/epam/catgenome/security/UserContext.java start line: 92 end line: 106 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2642 unit: public AclSecuredEntry deletePermissions() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 128 end line: 140 size: 12 LOC McCabe index: 2 number of parameters: 4 id: 2643 unit: private void filterLeafs() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 253 end line: 264 size: 12 LOC McCabe index: 2 number of parameters: 5 id: 2644 unit: public void vcfFilterFormFilter() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 331 end line: 342 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2645 unit: public GeneLowLevel() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneLowLevel.java start line: 83 end line: 95 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2646 unit: private void addFeatureNameFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 118 end line: 129 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2647 unit: private void addFeatureSourceFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 147 end line: 159 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2648 unit: private void addFeatureStrandFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 166 end line: 178 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2649 unit: private void addChromosomeFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 247 end line: 258 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2650 unit: public void filterChildren() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 106 end line: 118 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2651 unit: private void addVariationTypeFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 184 end line: 196 size: 12 LOC McCabe index: 5 number of parameters: 1 id: 2652 unit: private void addSampleNamesFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 198 end line: 209 size: 12 LOC McCabe index: 5 number of parameters: 1 id: 2653 unit: private static BiologicalDataItem mapHeatMap() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 440 end line: 451 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2654 unit: private static BiologicalDataItem mapPathway() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 464 end line: 475 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2655 unit: protected IndexSearchResult performSearch() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/searcher/PagingSearcher.java start line: 60 end line: 74 size: 12 LOC McCabe index: 2 number of parameters: 5 id: 2656 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/GeneIndexSortField.java start line: 46 end line: 57 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2657 unit: public void writeLuceneIndexForFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 262 end line: 275 size: 12 LOC McCabe index: 3 number of parameters: 4 id: 2658 unit: public TopDocs performSearch() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 876 end line: 887 size: 12 LOC McCabe index: 3 number of parameters: 5 id: 2659 unit: private void fetchTermValues() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 1020 end line: 1031 size: 12 LOC McCabe index: 3 number of parameters: 3 id: 2660 unit: private void addInfoField() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/BigVcfDocumentBuilder.java start line: 397 end line: 408 size: 12 LOC McCabe index: 3 number of parameters: 3 id: 2661 unit: private Object parseNumberArray() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 196 end line: 207 size: 12 LOC McCabe index: 3 number of parameters: 2 id: 2662 unit: private Object parseNumber() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 209 end line: 220 size: 12 LOC McCabe index: 3 number of parameters: 2 id: 2663 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneDomainDao.java start line: 72 end line: 83 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2664 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneAliasDao.java start line: 72 end line: 83 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2665 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupGeneDao.java start line: 85 end line: 96 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2666 unit: static RowMapper getChromosomeMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 641 end line: 652 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2667 unit: public List createIds() file: server/catgenome/src/main/java/com/epam/catgenome/dao/DaoHelper.java start line: 116 end line: 129 size: 12 LOC McCabe index: 2 number of parameters: 2 id: 2668 unit: public static BookmarkVO convertTo() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/BookmarkConverter.java start line: 50 end line: 64 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2669 unit: public static Bookmark convertFrom() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/BookmarkConverter.java start line: 80 end line: 94 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2670 unit: public GenotypeGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/GenotypeGA4GH.java start line: 47 end line: 58 size: 12 LOC McCabe index: 1 number of parameters: 9 id: 2671 unit: public Result jumpToNextGene() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vcf/VcfController.java start line: 212 end line: 223 size: 12 LOC McCabe index: 1 number of parameters: 2 id: 2672 unit: public Result generateShortUrl() file: server/catgenome/src/main/java/com/epam/catgenome/controller/UtilsController.java start line: 196 end line: 209 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2673 unit: public JsonMapper() file: server/catgenome/src/main/java/com/epam/catgenome/controller/JsonMapper.java start line: 75 end line: 102 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2674 unit: public MafCodec() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/MafCodec.java start line: 63 end line: 74 size: 12 LOC McCabe index: 5 number of parameters: 1 id: 2675 unit: private Chromosome validateCommonTrack() file: server/catgenome/src/main/java/com/epam/catgenome/manager/TrackHelper.java start line: 174 end line: 187 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2676 unit: public Chromosome validateTrackWithBlockCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/TrackHelper.java start line: 204 end line: 215 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2677 unit: private void addChromosomesFilter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageManager.java start line: 339 end line: 350 size: 12 LOC McCabe index: 3 number of parameters: 3 id: 2678 unit: public ConstantMemorySAMRecordSampler() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/ConstantMemorySAMRecordSampler.java start line: 71 end line: 84 size: 12 LOC McCabe index: 1 number of parameters: 5 id: 2679 unit: private void processUnknown() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 419 end line: 430 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2680 unit: public void sendBamTrackToEmitterFromUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamManager.java start line: 189 end line: 200 size: 12 LOC McCabe index: 2 number of parameters: 5 id: 2681 unit: public NgbUser updateUserSAMLInfo() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 157 end line: 169 size: 12 LOC McCabe index: 4 number of parameters: 5 id: 2682 unit: protected void setCanonicalTranscriptIndexes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 571 end line: 583 size: 12 LOC McCabe index: 3 number of parameters: 2 id: 2683 unit: protected void calculateExonsCountAndLength() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 614 end line: 626 size: 12 LOC McCabe index: 3 number of parameters: 2 id: 2684 unit: private static String getTranscriptId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 326 end line: 338 size: 12 LOC McCabe index: 5 number of parameters: 2 id: 2685 unit: public Track loadGenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneTrackManager.java start line: 145 end line: 156 size: 12 LOC McCabe index: 2 number of parameters: 4 id: 2686 unit: private GeneFeature createFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffCodec.java start line: 136 end line: 147 size: 12 LOC McCabe index: 5 number of parameters: 1 id: 2687 unit: private ActivityType determineActivityTypeFromStringValues() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneActivityService.java start line: 85 end line: 96 size: 12 LOC McCabe index: 6 number of parameters: 2 id: 2688 unit: public void addParent() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 180 end line: 192 size: 12 LOC McCabe index: 4 number of parameters: 1 id: 2689 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 333 end line: 345 size: 12 LOC McCabe index: 6 number of parameters: 1 id: 2690 unit: private void writeJoinedByDelimiter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 101 end line: 113 size: 12 LOC McCabe index: 3 number of parameters: 3 id: 2691 unit: private void adjustSequenceDictionary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 262 end line: 275 size: 12 LOC McCabe index: 4 number of parameters: 1 id: 2692 unit: private boolean addFeatureToLargeScaleFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 477 end line: 490 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2693 unit: private DimStructure parseTo() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 929 end line: 940 size: 12 LOC McCabe index: 3 number of parameters: 2 id: 2694 unit: public int calculateExonLength() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 1071 end line: 1083 size: 12 LOC McCabe index: 2 number of parameters: 3 id: 2695 unit: private Variation readNextOrPreviousVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 237 end line: 248 size: 12 LOC McCabe index: 3 number of parameters: 7 id: 2696 unit: private Variation createVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 291 end line: 302 size: 12 LOC McCabe index: 4 number of parameters: 4 id: 2697 unit: public Variation getNextOrPreviousVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 130 end line: 142 size: 12 LOC McCabe index: 7 number of parameters: 6 id: 2698 unit: private Variation getLastVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 174 end line: 185 size: 12 LOC McCabe index: 4 number of parameters: 4 id: 2699 unit: public CallSetSearch callSetSearch() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 646 end line: 657 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2700 unit: public VcfFile unregisterVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 241 end line: 252 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2701 unit: private Integer getSampleIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 903 end line: 915 size: 12 LOC McCabe index: 3 number of parameters: 2 id: 2702 unit: public void genePredToGff() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genepred/GenePredManager.java start line: 65 end line: 77 size: 12 LOC McCabe index: 1 number of parameters: 4 id: 2703 unit: private void writeTranscript() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genepred/GenePredManager.java start line: 120 end line: 133 size: 12 LOC McCabe index: 1 number of parameters: 3 id: 2704 unit: public List getGeneFilesForReference() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 517 end line: 528 size: 12 LOC McCabe index: 2 number of parameters: 2 id: 2705 unit: public void setEnsemblIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 449 end line: 460 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2706 unit: private Query buildSearchQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 462 end line: 473 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2707 unit: public static List ensemblEntryVO2Transcript() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ExtenalDBUtils.java start line: 66 end line: 78 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2708 unit: public List fetchTaxonomyInfosByTermMock() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIAuxiliaryManager.java start line: 109 end line: 120 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2709 unit: private NCBISummaryVO parsePubmedEntry() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneManager.java start line: 306 end line: 317 size: 12 LOC McCabe index: 2 number of parameters: 2 id: 2710 unit: private String getLocationStub() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/HttpDataManager.java start line: 117 end line: 129 size: 12 LOC McCabe index: 4 number of parameters: 2 id: 2711 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastDatabaseManager.java start line: 66 end line: 77 size: 12 LOC McCabe index: 3 number of parameters: 2 id: 2712 unit: public String generateSingedUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/aws/S3Manager.java start line: 67 end line: 78 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2713 unit: public SegFile registerSegFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegManager.java start line: 106 end line: 119 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2714 unit: public String createReferenceIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 706 end line: 718 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2715 unit: public BufferedWriter makeMafFileWriter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1852 end line: 1867 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2716 unit: public String getWigFilePath() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1898 end line: 1910 size: 12 LOC McCabe index: 2 number of parameters: 2 id: 2717 unit: private void lastAdd2HeapAndWrite() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataWriter.java start line: 196 end line: 208 size: 12 LOC McCabe index: 4 number of parameters: 2 id: 2718 unit: loadMafTrack() file: client/client/dataServices/maf/maf-data-service.js start line: 8 end line: 19 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2719 unit: callMethod() file: client/client/dataServices/data-service.js start line: 120 end line: 131 size: 12 LOC McCabe index: 4 number of parameters: 3 id: 2720 unit: function _validateFullCondition() file: client/client/dataServices/utils/highlight-condition-service.js start line: 71 end line: 83 size: 12 LOC McCabe index: 5 number of parameters: 1 id: 2721 unit: getUsers() file: client/client/dataServices/user/user-data-service.js start line: 9 end line: 20 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2722 unit: currentUserIsAdmin() file: client/client/dataServices/user/user-data-service.js start line: 79 end line: 90 size: 12 LOC McCabe index: 4 number of parameters: 0 id: 2723 unit: getProjects() file: client/client/dataServices/project/project-data-service.js start line: 19 end line: 30 size: 12 LOC McCabe index: 4 number of parameters: 1 id: 2724 unit: getVcfVariationLoad() file: client/client/dataServices/project/project-data-service.js start line: 120 end line: 131 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2725 unit: getVcfGroupData() file: client/client/dataServices/project/project-data-service.js start line: 133 end line: 144 size: 12 LOC McCabe index: 2 number of parameters: 2 id: 2726 unit: loadBucket() file: client/client/dataServices/bucket/bucket-data-service.js start line: 8 end line: 19 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2727 unit: saveBucket() file: client/client/dataServices/bucket/bucket-data-service.js start line: 21 end line: 32 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2728 unit: loadSegTrack() file: client/client/dataServices/seg/seg-data-service.js start line: 8 end line: 19 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2729 unit: get routeInfo() file: client/client/app/shared/miewContext/index.js start line: 58 end line: 69 size: 12 LOC McCabe index: 4 number of parameters: 0 id: 2730 unit: function getPositionPropertiesOfEvent() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.directive.js start line: 74 end line: 85 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2731 unit: createGroup() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 102 end line: 113 size: 12 LOC McCabe index: 4 number of parameters: 3 id: 2732 unit: const mapFn = function() file: client/client/app/shared/components/ngbMainToolbar/ngbBookmark/ngbBookmarkSaveDlg.controller.js start line: 170 end line: 181 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2733 unit: onClick() file: client/client/app/shared/components/ngbMainToolbar/ngbShareLink/ngbShareLink.controller.js start line: 19 end line: 30 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2734 unit: generateAccessKey() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.controller.js start line: 67 end line: 79 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2735 unit: _mergeSettings() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 57 end line: 68 size: 12 LOC McCabe index: 4 number of parameters: 1 id: 2736 unit: _pickOutLocalSettings() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 95 end line: 106 size: 12 LOC McCabe index: 4 number of parameters: 2 id: 2737 unit: onMouseDown() file: client/client/app/shared/components/ngbFloatingPanel/controller.js start line: 108 end line: 119 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2738 unit: getModelName() file: client/client/app/shared/components/ngbLLM/ngbLLM.controller.js start line: 61 end line: 72 size: 12 LOC McCabe index: 6 number of parameters: 1 id: 2739 unit: htmlModule: stringToDash() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.service.js start line: 79 end line: 104 size: 12 LOC McCabe index: 4 number of parameters: 1 id: 2740 unit: createStackItem() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.service.js start line: 95 end line: 108 size: 12 LOC McCabe index: 4 number of parameters: 1 id: 2741 unit: function correctPosition() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/parse-coordinates.js start line: 21 end line: 32 size: 12 LOC McCabe index: 3 number of parameters: 2 id: 2742 unit: constructor() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 27 end line: 38 size: 12 LOC McCabe index: 1 number of parameters: 7 id: 2743 unit: onClick() file: client/client/app/shared/components/ngbHeader/ngbShareLink/ngbShareLink.controller.js start line: 19 end line: 30 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2744 unit: export default function() file: client/client/app/shared/components/widgets/TextBox/ngKeyBind.js start line: 1 end line: 25 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2745 unit: function map() file: client/client/app/shared/components/widgets/TextBox/ngKeyBind.js start line: 2 end line: 13 size: 12 LOC McCabe index: 4 number of parameters: 1 id: 2746 unit: clearVcfFilter() file: client/client/app/shared/projectContext/index.js start line: 1300 end line: 1311 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2747 unit: getVcfFileIdsByProject() file: client/client/app/shared/projectContext/index.js start line: 1907 end line: 1918 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2748 unit: setCustomName() file: client/client/app/shared/services/trackNaming.service.js start line: 39 end line: 50 size: 12 LOC McCabe index: 4 number of parameters: 2 id: 2749 unit: template: require() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 238 end line: 249 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2750 unit: setChips() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 131 end line: 142 size: 12 LOC McCabe index: 4 number of parameters: 1 id: 2751 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 144 end line: 155 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2752 unit: async loadData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 204 end line: 215 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2753 unit: hideList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 75 end line: 86 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2754 unit: hideList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbDiseasesTargetsFilterList.controller.js start line: 78 end line: 89 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2755 unit: itemIsSelected() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbDiseasesTargetsFilterList.controller.js start line: 107 end line: 118 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2756 unit: async loadData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 228 end line: 239 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2757 unit: getPublicationRequest() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 155 end line: 166 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2758 unit: controller: function() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPluralText/ngbPluralText.component.js start line: 9 end line: 20 size: 12 LOC McCabe index: 4 number of parameters: 1 id: 2759 unit: function buildNodeLinks() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesGraph/make.graph.js start line: 60 end line: 71 size: 12 LOC McCabe index: 2 number of parameters: 5 id: 2760 unit: hideList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 65 end line: 76 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2761 unit: getColumnList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 74 end line: 85 size: 12 LOC McCabe index: 4 number of parameters: 0 id: 2762 unit: async loadData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 309 end line: 320 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2763 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 80 end line: 91 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2764 unit: hideList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 78 end line: 89 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2765 unit: itemIsSelected() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 107 end line: 118 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2766 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 80 end line: 91 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2767 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 117 end line: 128 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2768 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.controller.js start line: 71 end line: 82 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2769 unit: async loadData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 150 end line: 161 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2770 unit: get tabs() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.controller.js start line: 23 end line: 34 size: 12 LOC McCabe index: 4 number of parameters: 0 id: 2771 unit: resetData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 598 end line: 609 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2772 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 124 end line: 135 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2773 unit: async loadData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 231 end line: 242 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2774 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 17 end line: 29 size: 12 LOC McCabe index: 1 number of parameters: 4 id: 2775 unit: hideList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 72 end line: 83 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2776 unit: hideList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 67 end line: 78 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2777 unit: isIdentifyDisabled() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 240 end line: 251 size: 12 LOC McCabe index: 12 number of parameters: 0 id: 2778 unit: isSomeGeneEmpty() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 253 end line: 264 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2779 unit: addNewGene() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 453 end line: 464 size: 12 LOC McCabe index: 4 number of parameters: 0 id: 2780 unit: getParasiteGenesMetadataRequest() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 741 end line: 752 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2781 unit: putParasiteTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 850 end line: 861 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2782 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 7 end line: 19 size: 12 LOC McCabe index: 1 number of parameters: 7 id: 2783 unit: apply() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterInput/ngbTargetGenesFilterInput.controller.js start line: 45 end line: 56 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2784 unit: convertToNumber() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterRange/ngbTargetGenesFilterRange.controller.js start line: 85 end line: 96 size: 12 LOC McCabe index: 5 number of parameters: 1 id: 2785 unit: saveSortConfiguration() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 575 end line: 586 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2786 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsFormActions/ngbTargetsFormActions.controller.js start line: 15 end line: 26 size: 12 LOC McCabe index: 1 number of parameters: 5 id: 2787 unit: get rsId() file: client/client/app/components/ngbVariantPanel/ngbVariantPanel.controller.js start line: 22 end line: 35 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2788 unit: export default function run() file: client/client/app/components/ngbVariantPanel/ngbVariantPanel.run.js start line: 1 end line: 47 size: 12 LOC McCabe index: 1 number of parameters: 3 id: 2789 unit: constructor() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.controller.js start line: 48 end line: 61 size: 12 LOC McCabe index: 1 number of parameters: 6 id: 2790 unit: async blatSearchLoadingFinished() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.controller.js start line: 124 end line: 137 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2791 unit: hideList() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbMotifsResultsFilterList.controller.js start line: 135 end line: 146 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2792 unit: async initialize() file: client/client/app/components/ngbMotifsPanel/ngbMotifsParamsTable/ngbMotifsParamsTable.controller.js start line: 61 end line: 72 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2793 unit: constructor() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResult.controller.js start line: 11 end line: 22 size: 12 LOC McCabe index: 1 number of parameters: 5 id: 2794 unit: constructor() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResult.controller.js start line: 11 end line: 22 size: 12 LOC McCabe index: 1 number of parameters: 5 id: 2795 unit: hideList() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbBookmarksFilterList.controller.js start line: 114 end line: 125 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2796 unit: constructor() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 48 end line: 59 size: 12 LOC McCabe index: 3 number of parameters: 5 id: 2797 unit: const mapTrackFn = function() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 64 end line: 75 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2798 unit: export function convertProjectForSave() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 95 end line: 115 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2799 unit: export function deSelectAllProjectReferences() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 299 end line: 310 size: 12 LOC McCabe index: 5 number of parameters: 1 id: 2800 unit: constructor() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbAddUserRoleDlg.controller.js start line: 51 end line: 62 size: 12 LOC McCabe index: 1 number of parameters: 7 id: 2801 unit: getSubjectDisplayName() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 175 end line: 186 size: 12 LOC McCabe index: 7 number of parameters: 0 id: 2802 unit: checkDatasetSelection() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 230 end line: 241 size: 12 LOC McCabe index: 7 number of parameters: 1 id: 2803 unit: determineDarkness() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 573 end line: 589 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2804 unit: showInfo() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 350 end line: 361 size: 12 LOC McCabe index: 1 number of parameters: 2 id: 2805 unit: hideList() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbGenesFilterList.controller.js start line: 97 end line: 108 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2806 unit: static convertToNumber() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterRange/ngbGenesFilterRange.controller.js start line: 21 end line: 32 size: 12 LOC McCabe index: 5 number of parameters: 1 id: 2807 unit: template: require() file: client/client/app/components/ngbMolecularViewer/ngbMiew/ngbMiew.component.js start line: 4 end line: 15 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2808 unit: hideList() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterList/ngbVariantsFilterList.controller.js start line: 101 end line: 112 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2809 unit: static convertToNumber() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterRange/ngbVariantsFilterRange.controller.js start line: 83 end line: 94 size: 12 LOC McCabe index: 5 number of parameters: 1 id: 2810 unit: rowTemplate: require() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 117 end line: 129 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2811 unit: static convertToNumber() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterRange/ngbCoverageFilterRange.controller.js start line: 22 end line: 33 size: 12 LOC McCabe index: 5 number of parameters: 1 id: 2812 unit: hideList() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbCoverageFilterList.controller.js start line: 68 end line: 79 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2813 unit: panelChanged() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 285 end line: 296 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2814 unit: onSearch() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/ngbBlastSearchForm.controller.js start line: 178 end line: 189 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2815 unit: onCancel() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistory.controller.js start line: 220 end line: 232 size: 12 LOC McCabe index: 1 number of parameters: 2 id: 2816 unit: async getOrganismList() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 78 end line: 89 size: 12 LOC McCabe index: 1 number of parameters: 2 id: 2817 unit: createSearchRequest() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 326 end line: 337 size: 12 LOC McCabe index: 4 number of parameters: 2 id: 2818 unit: async initialize() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignmentList.controller.js start line: 32 end line: 45 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2819 unit: save() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbBedColorPreference/ngbBedColorPreference.controller.js start line: 53 end line: 64 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2820 unit: link: function() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/fileModel.directive.js start line: 5 end line: 18 size: 12 LOC McCabe index: 1 number of parameters: 4 id: 2821 unit: function initializeManualConfig() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 7 end line: 18 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2822 unit: hideList() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysFilterList/ngbInternalPathwaysFilterList.controller.js start line: 79 end line: 90 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2823 unit: saveDefaultPositions() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 421 end line: 432 size: 12 LOC McCabe index: 3 number of parameters: 2 id: 2824 unit: clearAnnotation() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 492 end line: 503 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2825 unit: setStyleToDomNode() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 554 end line: 565 size: 12 LOC McCabe index: 4 number of parameters: 2 id: 2826 unit: setDatasetNames() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.controller.js start line: 139 end line: 150 size: 12 LOC McCabe index: 5 number of parameters: 1 id: 2827 unit: constructor() file: client/client/app/components/ngbBrowser/ngbBrowser.controller.js start line: 12 end line: 24 size: 12 LOC McCabe index: 1 number of parameters: 6 id: 2828 unit: getFeatureInfo() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfo.service.js start line: 12 end line: 23 size: 12 LOC McCabe index: 4 number of parameters: 2 id: 2829 unit: deleted: Boolean() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 51 end line: 95 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2830 unit: unsavedChanges() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 174 end line: 185 size: 12 LOC McCabe index: 6 number of parameters: 1 id: 2831 unit: destructor() file: client/client/modules/render/core/track/track.js start line: 317 end line: 328 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2832 unit: get scrollConfig() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRendererWIthVerticalScroll.js start line: 32 end line: 43 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2833 unit: async _transformViewportSet() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 335 end line: 346 size: 12 LOC McCabe index: 1 number of parameters: 2 id: 2834 unit: async _transformViewportGlobal() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 370 end line: 381 size: 12 LOC McCabe index: 3 number of parameters: 2 id: 2835 unit: get scaleRenderParams() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 125 end line: 136 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2836 unit: get stateKeys() file: client/client/modules/render/tracks/wig/index.js start line: 81 end line: 92 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2837 unit: _flagsChanged() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 248 end line: 259 size: 12 LOC McCabe index: 10 number of parameters: 1 id: 2838 unit: popRead() file: client/client/modules/render/tracks/bam/internal/transformers/layoutReads.js start line: 107 end line: 118 size: 12 LOC McCabe index: 4 number of parameters: 0 id: 2839 unit: function parseNcigar() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 42 end line: 53 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2840 unit: async updateCache() file: client/client/modules/render/tracks/motifs/index.js start line: 109 end line: 120 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2841 unit: static getAminoacidInfo() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/aminoacidFeatureRenderer.js start line: 89 end line: 100 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2842 unit: analyzeBoundaries() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/aminoacidFeatureRenderer.js start line: 137 end line: 148 size: 12 LOC McCabe index: 4 number of parameters: 2 id: 2843 unit: get textureCoordinates() file: client/client/modules/render/tracks/gene/internal/renderer/features/featureRenderer.js start line: 72 end line: 95 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2844 unit: const updateCoordinates = function() file: client/client/modules/render/tracks/gene/internal/renderer/features/featureRenderer.js start line: 77 end line: 88 size: 12 LOC McCabe index: 8 number of parameters: 1 id: 2845 unit: manageDockableElements() file: client/client/modules/render/tracks/gene/internal/renderer/features/featureRenderer.js start line: 262 end line: 273 size: 12 LOC McCabe index: 4 number of parameters: 0 id: 2846 unit: checkPosition() file: client/client/modules/render/tracks/gene/internal/renderer/geneRenderer.js start line: 232 end line: 244 size: 12 LOC McCabe index: 6 number of parameters: 5 id: 2847 unit: analyzeBoundaries() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/deletionFeatureRenderer.js start line: 7 end line: 18 size: 12 LOC McCabe index: 2 number of parameters: 2 id: 2848 unit: constructor() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/coverage.js start line: 15 end line: 26 size: 12 LOC McCabe index: 4 number of parameters: 2 id: 2849 unit: translateContainer() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/vcfRenderer.js start line: 120 end line: 131 size: 12 LOC McCabe index: 2 number of parameters: 2 id: 2850 unit: expandBubbles() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 262 end line: 273 size: 12 LOC McCabe index: 4 number of parameters: 1 id: 2851 unit: scrollIndicatorBoundaries() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 221 end line: 232 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2852 unit: changeRulerBody() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 182 end line: 193 size: 12 LOC McCabe index: 1 number of parameters: 2 id: 2853 unit: static _findTicksCount() file: client/client/modules/render/tracks/ruler/rulerTransformer.js start line: 50 end line: 61 size: 12 LOC McCabe index: 2 number of parameters: 3 id: 2854 unit: _getSelectionRegion() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 353 end line: 364 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2855 unit: drag() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 159 end line: 170 size: 12 LOC McCabe index: 3 number of parameters: 2 id: 2856 unit: _gradientColor() file: client/client/modules/render/tracks/reference/referenceRenderer.js start line: 311 end line: 322 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2857 unit: export default function parseOffset() file: client/client/modules/render/utilities/parse-offset.js start line: 1 end line: 12 size: 12 LOC McCabe index: 3 number of parameters: 1 id: 2858 unit: unregisterInteractiveZone() file: client/client/modules/render/heatmap/interactions/index.js start line: 106 end line: 117 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 2859 unit: updateButtonPositions() file: client/client/modules/render/heatmap/renderer/heatmap-options-renderer/index.js start line: 94 end line: 105 size: 12 LOC McCabe index: 4 number of parameters: 0 id: 2860 unit: export function getNodeDisplayMode() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/utilities/get-node-display-mode.js start line: 27 end line: 38 size: 12 LOC McCabe index: 4 number of parameters: 2 id: 2861 unit: export default function getNodeSubTrees() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/utilities/get-node-sub-trees.js start line: 6 end line: 17 size: 12 LOC McCabe index: 4 number of parameters: 1 id: 2862 unit: set windowSize() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 126 end line: 137 size: 12 LOC McCabe index: 5 number of parameters: 1 id: 2863 unit: onHover() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 115 end line: 126 size: 12 LOC McCabe index: 4 number of parameters: 1 id: 2864 unit: destroy() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 50 end line: 61 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2865 unit: export function getSessionFlags() file: client/client/modules/render/heatmap/renderer/data-renderer/utilities/viewport-session-flags.js start line: 1 end line: 12 size: 12 LOC McCabe index: 5 number of parameters: 2 id: 2866 unit: getValue() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/collapsed-tree.js start line: 36 end line: 47 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2867 unit: destroy() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/index.js start line: 136 end line: 147 size: 12 LOC McCabe index: 4 number of parameters: 0 id: 2868 unit: getPartialRebuildOptions() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 298 end line: 310 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2869 unit: getCorrectedCenter() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 140 end line: 151 size: 12 LOC McCabe index: 2 number of parameters: 2 id: 2870 unit: destroyPixiRenderer() file: client/client/modules/render/heatmap/index.js start line: 124 end line: 135 size: 12 LOC McCabe index: 5 number of parameters: 0 id: 2871 unit: destroy() file: client/client/modules/render/heatmap/index.js start line: 137 end line: 148 size: 12 LOC McCabe index: 3 number of parameters: 0 id: 2872 unit: export function movePoint() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 245 end line: 256 size: 12 LOC McCabe index: 4 number of parameters: 3 id: 2873 unit: constructor() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 99 end line: 114 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2874 unit: assignData() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 356 end line: 367 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 2875 unit: color: getAvailableColor() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 490 end line: 502 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 2876 unit: g: interpolate() file: client/client/modules/render/heatmap/color-scheme/helpers.js start line: 74 end line: 86 size: 12 LOC McCabe index: 3 number of parameters: 3 id: 2877 unit: _renderBreakpointConnections() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 1362 end line: 1373 size: 12 LOC McCabe index: 2 number of parameters: 0 id: 2878 unit: _registerDraggableGraphics() file: client/client/modules/render/variant-render/renderers/interaction/drag-manager.js start line: 30 end line: 43 size: 12 LOC McCabe index: 1 number of parameters: 2 id: 2879 unit: function createEnv() file: desktop/src/ScriptUtils.js start line: 4 end line: 17 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2880 unit: function killLinux() file: desktop/src/ScriptUtils.js start line: 35 end line: 56 size: 11 LOC McCabe index: 5 number of parameters: 3 id: 2881 unit: psTree() file: desktop/src/ScriptUtils.js start line: 40 end line: 50 size: 11 LOC McCabe index: 2 number of parameters: 3 id: 2882 unit: private Properties loadProperties() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/ConfigurationLoader.java start line: 176 end line: 186 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2883 unit: public String getFormatString() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionsContainer.java start line: 55 end line: 67 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2884 unit: public String formatItem() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/lineage/LineageTree.java start line: 76 end line: 86 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 2885 unit: private void getItemFormat() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/lineage/LineageTree.java start line: 94 end line: 104 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 2886 unit: public String formatItem() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/pathway/NGBPathway.java start line: 75 end line: 85 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 2887 unit: private void getItemFormat() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/pathway/NGBPathway.java start line: 93 end line: 103 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 2888 unit: public static BiologicalDataItemResourceType getTypeFromPath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItemResourceType.java start line: 87 end line: 97 size: 11 LOC McCabe index: 7 number of parameters: 1 id: 2889 unit: private SortRequest prepareSortRequest() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/SortHandler.java start line: 135 end line: 147 size: 11 LOC McCabe index: 4 number of parameters: 0 id: 2890 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/dataset/DatasetListHandler.java start line: 83 end line: 93 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 2891 unit: public static Set getTaxIds() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/pathway/PathwayRegistrationHandler.java start line: 77 end line: 87 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2892 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/coverage/CoverageRegistrationHandler.java start line: 55 end line: 66 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 2893 unit: protected Long loadItemId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 335 end line: 345 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2894 unit: protected void isResultOk() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 568 end line: 578 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2895 unit: private void checkLoadedItems() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 810 end line: 820 size: 11 LOC McCabe index: 5 number of parameters: 2 id: 2896 unit: private Pair splitFilePath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 893 end line: 903 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2897 unit: private int getPermissionMask() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/GrantPermissionHandler.java start line: 236 end line: 246 size: 11 LOC McCabe index: 3 number of parameters: 0 id: 2898 unit: private FeatureCodecHeader readHeader() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureIterator.java start line: 108 end line: 118 size: 11 LOC McCabe index: 2 number of parameters: 0 id: 2899 unit: public static Iterator getIterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/MotifSearcher.java start line: 56 end line: 66 size: 11 LOC McCabe index: 4 number of parameters: 7 id: 2900 unit: private Deque populateMatches() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/MotifSearchIterator.java start line: 86 end line: 96 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 2901 unit: public SortableRecord createRecord() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/Parser.java start line: 75 end line: 88 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2902 unit: public static String readResource() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 207 end line: 217 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2903 unit: private static String checkSecondCriteria() file: server/catgenome/src/main/java/com/epam/catgenome/util/ConsensusSequenceUtils.java start line: 134 end line: 145 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 2904 unit: public static List reverseComplement() file: server/catgenome/src/main/java/com/epam/catgenome/util/ProteinSequenceUtils.java start line: 99 end line: 111 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2905 unit: public static List breakSequenceString() file: server/catgenome/src/main/java/com/epam/catgenome/util/ProteinSequenceUtils.java start line: 136 end line: 147 size: 11 LOC McCabe index: 3 number of parameters: 3 id: 2906 unit: public BiologicalDataItemDownloadUrl generatePresignedUrl() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 194 end line: 204 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 2907 unit: public static AbstractFeatureReader getFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractEnhancedFeatureReader.java start line: 125 end line: 136 size: 11 LOC McCabe index: 2 number of parameters: 4 id: 2908 unit: public CloseableTribbleIterator query() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 322 end line: 333 size: 11 LOC McCabe index: 3 number of parameters: 3 id: 2909 unit: public final void writeLong() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 151 end line: 161 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 2910 unit: public static List executeHistogramCreation() file: server/catgenome/src/main/java/com/epam/catgenome/util/HistogramUtils.java start line: 91 end line: 101 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 2911 unit: private Cookie extractAuthCookie() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtFilterAuthenticationFilter.java start line: 87 end line: 98 size: 11 LOC McCabe index: 4 number of parameters: 1 id: 2912 unit: public List convertUserToSids() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 247 end line: 257 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 2913 unit: public MutableAcl getAcl() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 135 end line: 145 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2914 unit: public void createAclIdentity() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/aspect/AclAspect.java start line: 76 end line: 87 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 2915 unit: public boolean isGroupRegistered() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 200 end line: 210 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2916 unit: private static boolean containsOppositeMask() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 101 end line: 111 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 2917 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 142 end line: 154 size: 11 LOC McCabe index: 5 number of parameters: 1 id: 2918 unit: public AclSid() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AclSid.java start line: 45 end line: 55 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2919 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AbstractSecuredEntity.java start line: 76 end line: 86 size: 11 LOC McCabe index: 5 number of parameters: 1 id: 2920 unit: private void addFeatureFrameFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 185 end line: 196 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2921 unit: public static BiologicalDataItemResourceType getTypeFromPath() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItemResourceType.java start line: 124 end line: 134 size: 11 LOC McCabe index: 5 number of parameters: 1 id: 2922 unit: private Long getBioDataItemId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 821 end line: 831 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2923 unit: static RowMapper getPasswordRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bucket/BucketDao.java start line: 131 end line: 143 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 2924 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeNodeDao.java start line: 69 end line: 79 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2925 unit: private TopDocs getNextPage() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/searcher/NextPageSearcher.java start line: 76 end line: 87 size: 11 LOC McCabe index: 2 number of parameters: 5 id: 2926 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/VcfIndexSortField.java start line: 45 end line: 55 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 2927 unit: private long getTotalIndexSize() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 830 end line: 840 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2928 unit: private GeneHighLevel prepareGeneContentForDocument() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 1194 end line: 1208 size: 11 LOC McCabe index: 5 number of parameters: 1 id: 2929 unit: private TopDocs performIntervalSearch() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 1243 end line: 1254 size: 11 LOC McCabe index: 2 number of parameters: 5 id: 2930 unit: protected List simplify() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 254 end line: 266 size: 11 LOC McCabe index: 2 number of parameters: 5 id: 2931 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupDao.java start line: 83 end line: 93 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2932 unit: static HomologGroup parseGroup() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupDao.java start line: 137 end line: 147 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 2933 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneDomainDao.java start line: 112 end line: 122 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 2934 unit: static Domain parseDomain() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneDomainDao.java start line: 128 end line: 138 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 2935 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneDescDao.java start line: 73 end line: 83 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2936 unit: public void updateCellAnnotation() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 143 end line: 154 size: 11 LOC McCabe index: 1 number of parameters: 4 id: 2937 unit: public List loadGenomeIdsByAnnotationDataItemId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 388 end line: 398 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 2938 unit: private static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 209 end line: 221 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 2939 unit: public Result jumpToPrevGene() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vcf/VcfController.java start line: 235 end line: 245 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 2940 unit: public void redirectToOriginalUrlByAlias() file: server/catgenome/src/main/java/com/epam/catgenome/controller/UtilsController.java start line: 219 end line: 229 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 2941 unit: public void exportFeatureInProjectWithFilter() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 236 end line: 246 size: 11 LOC McCabe index: 1 number of parameters: 5 id: 2942 unit: public MafFile delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafFileManager.java start line: 127 end line: 137 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 2943 unit: public NggbBedFeature decode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedCodec.java start line: 71 end line: 81 size: 11 LOC McCabe index: 5 number of parameters: 1 id: 2944 unit: public NggbBedFeature decode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 86 end line: 96 size: 11 LOC McCabe index: 5 number of parameters: 1 id: 2945 unit: private void parseAndSetColour() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 215 end line: 226 size: 11 LOC McCabe index: 4 number of parameters: 3 id: 2946 unit: private void checkUpdatePermission() file: server/catgenome/src/main/java/com/epam/catgenome/manager/person/PersonManager.java start line: 69 end line: 80 size: 11 LOC McCabe index: 5 number of parameters: 1 id: 2947 unit: public void setBounds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/TrackHelper.java start line: 109 end line: 120 size: 11 LOC McCabe index: 4 number of parameters: 2 id: 2948 unit: private AbstractWigProcessor fetchWigManager() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/FacadeWigManager.java start line: 269 end line: 279 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2949 unit: public BamFile delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamFileManager.java start line: 106 end line: 117 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 2950 unit: private void parseBam() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 626 end line: 641 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 2951 unit: public void writeTrackAndFinish() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamTrackEmitter.java start line: 93 end line: 105 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 2952 unit: public boolean hasNext() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GeneIndexIterator.java start line: 58 end line: 70 size: 11 LOC McCabe index: 4 number of parameters: 0 id: 2953 unit: public static String getGeneName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 222 end line: 234 size: 11 LOC McCabe index: 5 number of parameters: 1 id: 2954 unit: private Set getAncestors() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 111 end line: 121 size: 11 LOC McCabe index: 4 number of parameters: 1 id: 2955 unit: public void addCoFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 222 end line: 233 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2956 unit: private void addCoFeatureSet() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 320 end line: 330 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2957 unit: private void writeEntriesForChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 347 end line: 358 size: 11 LOC McCabe index: 4 number of parameters: 3 id: 2958 unit: private void downloadFileForRegistration() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 251 end line: 263 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 2959 unit: private void processExonForTrack() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 899 end line: 909 size: 11 LOC McCabe index: 4 number of parameters: 3 id: 2960 unit: public Project delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 363 end line: 375 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 2961 unit: private void attachMetadataToItem() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 600 end line: 612 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 2962 unit: private void checkURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/DownloadFileManager.java start line: 174 end line: 184 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2963 unit: private void tryToGroupVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 437 end line: 448 size: 11 LOC McCabe index: 4 number of parameters: 3 id: 2964 unit: private static VariationType getVariationTypeFromAlleles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 613 end line: 623 size: 11 LOC McCabe index: 4 number of parameters: 2 id: 2965 unit: public InfoFieldParser getExtendedInfoParser() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 509 end line: 519 size: 11 LOC McCabe index: 4 number of parameters: 0 id: 2966 unit: public List filterChromosomes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 240 end line: 253 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2967 unit: public Set getAvailableFieldValues() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 505 end line: 515 size: 11 LOC McCabe index: 2 number of parameters: 3 id: 2968 unit: public void setGeneSpeciesNames() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 402 end line: 412 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2969 unit: public static void fillSecondaryStructure() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ExtenalDBUtils.java start line: 119 end line: 129 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 2970 unit: private String buildTargetQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/GooglePatentManager.java start line: 136 end line: 146 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2971 unit: public List searchBySymbol() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneInfoManager.java start line: 80 end line: 90 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2972 unit: private List fillList() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 291 end line: 301 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 2973 unit: public int getTotalCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIAuxiliaryManager.java start line: 161 end line: 172 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 2974 unit: public String searchWithHistory() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIAuxiliaryManager.java start line: 183 end line: 197 size: 11 LOC McCabe index: 1 number of parameters: 3 id: 2975 unit: public String searchWithHistory() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIAuxiliaryManager.java start line: 199 end line: 213 size: 11 LOC McCabe index: 1 number of parameters: 4 id: 2976 unit: public String getSmiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pug/NCBIPugManager.java start line: 70 end line: 80 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2977 unit: public void writeLuceneTaxonomyIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 155 end line: 165 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2978 unit: private List readTaxonomyLines() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 259 end line: 269 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2979 unit: public List fetchPubMedArticles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/PubMedService.java start line: 116 end line: 126 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 2980 unit: private StructureRequest convertRequest() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbEntriesManager.java start line: 200 end line: 210 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 2981 unit: private Record parseRecord() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbDataManager.java start line: 156 end line: 166 size: 11 LOC McCabe index: 1 number of parameters: 6 id: 2982 unit: private Segment parseSegment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbDataManager.java start line: 174 end line: 186 size: 11 LOC McCabe index: 2 number of parameters: 3 id: 2983 unit: public BlastRequestInfo createTask() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastRequestManager.java start line: 73 end line: 83 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2984 unit: public CreateDatabaseResponse createDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastRequestManager.java start line: 125 end line: 135 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2985 unit: public SegFile create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegFileManager.java start line: 75 end line: 85 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2986 unit: public SegFile delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegFileManager.java start line: 120 end line: 132 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 2987 unit: public void makeReferenceDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 369 end line: 382 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2988 unit: private DataInputStream makeDataInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 645 end line: 656 size: 11 LOC McCabe index: 1 number of parameters: 3 id: 2989 unit: private DataOutputStream makeDataOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 658 end line: 669 size: 11 LOC McCabe index: 1 number of parameters: 3 id: 2990 unit: public void deleteFileFeatureIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 982 end line: 995 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2991 unit: public String getDownsampledBedGraphFilePath() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1932 end line: 1943 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2992 unit: private void fillSimpleIndexFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2266 end line: 2277 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 2993 unit: private String getGeneFileHeader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/ExportManager.java start line: 162 end line: 172 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 2994 unit: private String getVcfFileHeader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/ExportManager.java start line: 174 end line: 184 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 2995 unit: private static GeneFilterForm getGeneFilterForm() file: server/catgenome/src/main/java/com/epam/catgenome/manager/sequence/SequencesManager.java start line: 219 end line: 229 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 2996 unit: private FastaSequenceIndexEntry() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaIndex.java start line: 101 end line: 111 size: 11 LOC McCabe index: 1 number of parameters: 5 id: 2997 unit: private static void writeLine() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaUtils.java start line: 186 end line: 198 size: 11 LOC McCabe index: 2 number of parameters: 6 id: 2998 unit: public Bookmark create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/BookmarkManager.java start line: 73 end line: 86 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 2999 unit: getRoles() file: client/client/dataServices/role/role-data-service.js start line: 8 end line: 18 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 3000 unit: getRole() file: client/client/dataServices/role/role-data-service.js start line: 20 end line: 30 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 3001 unit: createGroup() file: client/client/dataServices/role/role-data-service.js start line: 32 end line: 42 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 3002 unit: assignUsersToRole() file: client/client/dataServices/role/role-data-service.js start line: 44 end line: 54 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 3003 unit: updateRole() file: client/client/dataServices/role/role-data-service.js start line: 56 end line: 66 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 3004 unit: deleteRole() file: client/client/dataServices/role/role-data-service.js start line: 68 end line: 78 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 3005 unit: removeRoleFromUsers() file: client/client/dataServices/role/role-data-service.js start line: 80 end line: 90 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 3006 unit: findADGroup() file: client/client/dataServices/role/role-data-service.js start line: 92 end line: 102 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 3007 unit: function split() file: client/client/dataServices/utils/highlight-condition-service.js start line: 310 end line: 320 size: 11 LOC McCabe index: 4 number of parameters: 1 id: 3008 unit: getUser() file: client/client/dataServices/user/user-data-service.js start line: 35 end line: 45 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 3009 unit: getJwtToken() file: client/client/dataServices/user/user-data-service.js start line: 92 end line: 102 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 3010 unit: createUser() file: client/client/dataServices/user/user-data-service.js start line: 104 end line: 114 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 3011 unit: updateUser() file: client/client/dataServices/user/user-data-service.js start line: 116 end line: 126 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 3012 unit: deleteUser() file: client/client/dataServices/user/user-data-service.js start line: 128 end line: 138 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 3013 unit: getObjectPermissions() file: client/client/dataServices/permissions/permissions-data-service.js start line: 9 end line: 19 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 3014 unit: getSettings() file: client/client/dataServices/local/local-data-service.js start line: 69 end line: 79 size: 11 LOC McCabe index: 3 number of parameters: 0 id: 3015 unit: getProjectsFilterVcfInfo() file: client/client/dataServices/project/project-data-service.js start line: 32 end line: 42 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 3016 unit: putSamplesAliases() file: client/client/dataServices/vcf/vcf-data-service.js start line: 146 end line: 156 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 3017 unit: loadBookmarks() file: client/client/dataServices/bookmark-data-service/bookmark-data-service.js start line: 27 end line: 37 size: 11 LOC McCabe index: 2 number of parameters: 0 id: 3018 unit: async confirmAuthenticationRedirect() file: client/client/app/app.controller.js start line: 380 end line: 390 size: 11 LOC McCabe index: 2 number of parameters: 0 id: 3019 unit: setTargetsTableActionsVisibility() file: client/client/app/shared/targetContext/index.js start line: 206 end line: 218 size: 11 LOC McCabe index: 10 number of parameters: 2 id: 3020 unit: allSelected() file: client/client/app/shared/selectionContext/index.js start line: 44 end line: 54 size: 11 LOC McCabe index: 4 number of parameters: 1 id: 3021 unit: increaseArrowIndex() file: client/client/app/shared/components/ngbChat/ngbChat.controller.js start line: 77 end line: 87 size: 11 LOC McCabe index: 3 number of parameters: 0 id: 3022 unit: decreaseArrowIndex() file: client/client/app/shared/components/ngbChat/ngbChat.controller.js start line: 89 end line: 99 size: 11 LOC McCabe index: 4 number of parameters: 0 id: 3023 unit: addRolesToGrid() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 86 end line: 96 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 3024 unit: fetchRolesAndGroups() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 91 end line: 101 size: 11 LOC McCabe index: 3 number of parameters: 0 id: 3025 unit: _mapRolesData() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.service.js start line: 82 end line: 92 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 3026 unit: _mapGroupsData() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.service.js start line: 94 end line: 104 size: 11 LOC McCabe index: 4 number of parameters: 1 id: 3027 unit: createItem() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.service.js start line: 72 end line: 82 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 3028 unit: closeAllTracks() file: client/client/app/shared/components/ngbGoldenLayout/ngbViewActions/ngbCloseAllTracks/ngbCloseAllTracks.controller.js start line: 15 end line: 25 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 3029 unit: ensureOverlay() file: client/client/app/shared/components/widgets/ngbColorPicker/ngbColorPicker.controller.js start line: 107 end line: 117 size: 11 LOC McCabe index: 2 number of parameters: 0 id: 3030 unit: controller: function() file: client/client/app/shared/components/widgets/collapsiblePanel/collapsiblePanel.component.js start line: 16 end line: 30 size: 11 LOC McCabe index: 3 number of parameters: 0 id: 3031 unit: setHighlightProfileConditions() file: client/client/app/shared/projectContext/index.js start line: 873 end line: 883 size: 11 LOC McCabe index: 3 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line: 246 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 3038 unit: addNote() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 411 end line: 421 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 3039 unit: INIT() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantDensityDiagram/ngbVariantDensityDiagram.controller.js start line: 88 end line: 98 size: 11 LOC McCabe index: 4 number of parameters: 0 id: 3040 unit: async setModels() file: client/client/app/components/ngbTargetPanel/ngbTargetLLM.service.js start line: 47 end line: 57 size: 11 LOC McCabe index: 3 number of parameters: 0 id: 3041 unit: onChangeDownload() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 106 end line: 116 size: 11 LOC McCabe index: 3 number of parameters: 0 id: 3042 unit: constructor() file: 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index: 1 number of parameters: 4 id: 3058 unit: resetTableResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 586 end line: 596 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 3059 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 83 end line: 93 size: 11 LOC McCabe index: 3 number of parameters: 0 id: 3060 unit: async loadData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 167 end line: 177 size: 11 LOC McCabe index: 2 number of parameters: 0 id: 3061 unit: constructor() file: 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index: 2 number of parameters: 0 id: 3065 unit: template: require() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetLaunchDialog/ngbTargetLaunchDialog.run.js start line: 138 end line: 148 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 3066 unit: setEmptyTargetModel() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 199 end line: 209 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 3067 unit: getParasiteTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 830 end line: 840 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 3068 unit: resetTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 917 end line: 927 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 3069 unit: template: require() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 477 end line: 488 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 3070 unit: template: require() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 745 end line: 755 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 3071 unit: async initAdditionalColumns() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 136 end line: 146 size: 11 LOC McCabe index: 4 number of parameters: 0 id: 3072 unit: sortChanged() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.controller.js start line: 176 end line: 186 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 3073 unit: constructor() file: 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client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 191 end line: 201 size: 11 LOC McCabe index: 2 number of parameters: 0 id: 3078 unit: update: function() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 210 end line: 221 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 3079 unit: function getTrackFileName() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 117 end line: 127 size: 11 LOC McCabe index: 5 number of parameters: 1 id: 3080 unit: function _getProjectHint() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 129 end line: 140 size: 11 LOC McCabe index: 5 number of parameters: 2 id: 3081 unit: export function expandNodeWithChilds() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 322 end line: 333 size: 11 LOC McCabe index: 5 number of parameters: 1 id: 3082 unit: export function getGenomeFilter() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 346 end line: 356 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 3083 unit: function findSelectedTracksFn() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 449 end line: 459 size: 11 LOC McCabe index: 7 number of parameters: 1 id: 3084 unit: export default function run() file: client/client/app/components/ngbVcfSampleAliases/ngbVcfSampleAliases.run.js start line: 3 end line: 22 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 3085 unit: constructor() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableColumn/ngbGenesTableColumn.controller.js start line: 13 end line: 26 size: 11 LOC McCabe index: 1 number of parameters: 4 id: 3086 unit: constructor() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsLoadingIndicator/ngbVariantsLoadingIndicator.controller.js start line: 13 end line: 24 size: 11 LOC McCabe index: 1 number of parameters: 3 id: 3087 unit: constructor() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterCheckbox/ngbVariantsFilterCheckbox.controller.js start line: 9 end line: 19 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 3088 unit: constructor() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableColumn/ngbVariantsTableColumn.controller.js start line: 12 end line: 25 size: 11 LOC McCabe index: 1 number of parameters: 4 id: 3089 unit: getNeededPage() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 96 end line: 106 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 3090 unit: setDefaultAlgorithms() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/ngbBlastSearchForm.controller.js start line: 113 end line: 123 size: 11 LOC McCabe index: 4 number of parameters: 0 id: 3091 unit: function scientificNameSorter() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 11 end line: 21 size: 11 LOC McCabe index: 5 number of parameters: 2 id: 3092 unit: openQueryInfo() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResult.controller.js start line: 85 end line: 99 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 3093 unit: async updateNavigationState() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.controller.js start line: 36 end line: 46 size: 11 LOC McCabe index: 4 number of parameters: 0 id: 3094 unit: function correctTrackHeight() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackResizePreference/ngbTrackResizePreference.helper.js start line: 3 end line: 13 size: 11 LOC McCabe index: 5 number of parameters: 2 id: 3095 unit: get trackHeaderStyle() file: 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line: 79 size: 11 LOC McCabe index: 6 number of parameters: 2 id: 3104 unit: getPlainNodes() file: client/client/app/components/ngbStrainLineage/ngbCytoscape/ngbCytoscape.controller.js start line: 258 end line: 268 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 3105 unit: getSelectedTreeOptions() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.controller.js start line: 152 end line: 162 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 3106 unit: _transformEnsemblDataToSummaryProperties() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfo.service.js start line: 46 end line: 63 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 3107 unit: loadRead() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoMain/ngbFeatureInfoMain.controller.js start line: 68 end line: 78 size: 11 LOC McCabe index: 2 number of parameters: 0 id: 3108 unit: constructor() file: 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client/client/modules/render/core/track/cachedTrack/cachedTrack.js start line: 32 end line: 44 size: 11 LOC McCabe index: 10 number of parameters: 0 id: 3114 unit: scrollIndicatorBoundaries() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRendererWIthVerticalScroll.js start line: 45 end line: 55 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 3115 unit: translateContainer() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRenderer.js start line: 68 end line: 78 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 3116 unit: show() file: client/client/modules/render/core/track/menu.js start line: 47 end line: 59 size: 11 LOC McCabe index: 2 number of parameters: 2 id: 3117 unit: end: parseFloat() file: client/client/modules/render/core/viewport/viewport.js start line: 377 end line: 388 size: 11 LOC McCabe index: 5 number of parameters: 1 id: 3118 unit: render() file: 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client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 282 end line: 294 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 3124 unit: viewAsPairsFlagChanged() file: client/client/modules/render/tracks/bam/index.js start line: 435 end line: 445 size: 11 LOC McCabe index: 3 number of parameters: 0 id: 3125 unit: async updateAndRefresh() file: client/client/modules/render/tracks/gene/index.js start line: 180 end line: 190 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 3126 unit: function enableFeature() file: client/client/modules/render/tracks/gene/exterior/featuresMenu.js start line: 12 end line: 22 size: 11 LOC McCabe index: 5 number of parameters: 3 id: 3127 unit: clear() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/index.js start line: 649 end line: 659 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 3128 unit: trackSettingsChanged() file: client/client/modules/render/tracks/vcf/index.js start line: 106 end line: 116 size: 11 LOC McCabe index: 4 number of parameters: 1 id: 3129 unit: get blatRegionConfig() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 61 end line: 71 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 3130 unit: const eventListenersDestructor = function() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 178 end line: 188 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 3131 unit: createNewBrush() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 274 end line: 284 size: 11 LOC McCabe index: 5 number of parameters: 3 id: 3132 unit: function enableSource() file: client/client/modules/render/tracks/featureCounts/menu/sourcesMenu.js start line: 12 end line: 22 size: 11 LOC McCabe index: 5 number of parameters: 3 id: 3133 unit: scroll() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 147 end line: 157 size: 11 LOC McCabe index: 4 number of parameters: 2 id: 3134 unit: trackSettingsChanged() file: client/client/modules/render/tracks/reference/index.js start line: 23 end line: 33 size: 11 LOC McCabe index: 4 number of parameters: 1 id: 3135 unit: async updateAndRefresh() file: client/client/modules/render/tracks/reference/index.js start line: 122 end line: 132 size: 11 LOC McCabe index: 2 number of parameters: 0 id: 3136 unit: getZoneBoundaries() file: client/client/modules/render/utilities/zonesManager.js start line: 29 end line: 39 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 3137 unit: constructor() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/binary-tree-graphics.js start line: 17 end line: 47 size: 11 LOC McCabe index: 1 number of parameters: 4 id: 3138 unit: updateSessionFlags() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 351 end line: 361 size: 11 LOC McCabe index: 2 number of parameters: 0 id: 3139 unit: render() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 236 end line: 246 size: 11 LOC McCabe index: 2 number of parameters: 0 id: 3140 unit: horizontalValuesAreTheSame() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/collapsed-tree.js start line: 182 end line: 192 size: 11 LOC McCabe index: 8 number of parameters: 1 id: 3141 unit: verticalValuesAreTheSame() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/collapsed-tree.js start line: 194 end line: 204 size: 11 LOC McCabe index: 8 number of parameters: 1 id: 3142 unit: updateGradient() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry-collection.js start line: 40 end line: 57 size: 11 LOC McCabe index: 4 number of parameters: 1 id: 3143 unit: appendDataItem() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 389 end line: 399 size: 11 LOC McCabe index: 6 number of parameters: 2 id: 3144 unit: canMove() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 204 end line: 214 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 3145 unit: initialize() file: client/client/modules/render/heatmap/viewport/heatmap-scale.js start line: 27 end line: 37 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 3146 unit: assignMetadata() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 71 end line: 81 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 3147 unit: function parseDataItemAsArray() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 7 end line: 17 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 3148 unit: export function extendRectangleByMargin() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 373 end line: 383 size: 11 LOC McCabe index: 4 number of parameters: 2 id: 3149 unit: buildMetadata() file: client/client/modules/render/heatmap/utilities/heatmap-trie.js start line: 300 end line: 310 size: 11 LOC McCabe index: 6 number of parameters: 1 id: 3150 unit: destroy() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 251 end line: 261 size: 11 LOC McCabe index: 3 number of parameters: 0 id: 3151 unit: get isFinite() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 126 end line: 136 size: 11 LOC McCabe index: 6 number of parameters: 0 id: 3152 unit: color: getAvailableColor() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 472 end line: 483 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 3153 unit: validate() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 221 end line: 231 size: 11 LOC McCabe index: 5 number of parameters: 0 id: 3154 unit: b: interpolate() file: client/client/modules/render/heatmap/color-scheme/helpers.js start line: 75 end line: 86 size: 11 LOC McCabe index: 3 number of parameters: 3 id: 3155 unit: renderObjects() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 76 end line: 86 size: 11 LOC McCabe index: 5 number of parameters: 2 id: 3156 unit: addDraggableZone() file: client/client/modules/render/variant-render/renderers/interaction/drag-manager.js start line: 18 end line: 28 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 3157 unit: renderObjects() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 74 end line: 84 size: 11 LOC McCabe index: 5 number of parameters: 2 id: 3158 unit: variantSubFeatureChanged() file: client/client/modules/render/variant-render/variant-renderer.js start line: 94 end line: 104 size: 11 LOC McCabe index: 4 number of parameters: 0 id: 3159 unit: getFlags() file: client/client/modules/render/variant-render/variant-renderer.js start line: 141 end line: 151 size: 11 LOC McCabe index: 3 number of parameters: 0 id: 3160 unit: render() file: client/client/modules/render/variant-render/variant-renderer.js start line: 159 end line: 169 size: 11 LOC McCabe index: 6 number of parameters: 0 id: 3161 unit: export default defineConfig() file: export-templates/target-identification/vite.config.js start line: 6 end line: 16 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 3162 unit: export function useColumnsForSource() file: export-templates/target-identification/src/sections/structures/columns.ts start line: 27 end line: 37 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 3163 unit: function getChildSelectOptionProps() file: export-templates/target-identification/src/common/select/index.tsx start line: 95 end line: 105 size: 11 LOC McCabe index: 5 number of parameters: 1 id: 3164 unit: private Properties getPropertiesFromFile() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/ConfigurationLoader.java start line: 188 end line: 197 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3165 unit: private Configuration loadXmlConfiguration() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/ConfigurationLoader.java start line: 199 end line: 208 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3166 unit: public static HeatmapAnnotationType from() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/heatmap/HeatmapAnnotationType.java start line: 32 end line: 41 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3167 unit: public String formatItem() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/pdb/PdbFile.java start line: 75 end line: 84 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3168 unit: private void getItemFormat() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/pdb/PdbFile.java start line: 92 end line: 101 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3169 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/SearchHandler.java start line: 60 end line: 69 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3170 unit: private HttpRequestBase createTreeRequest() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/dataset/DatasetListHandler.java start line: 137 end line: 146 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3171 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/dataset/DatasetDescriptionAdditionHandler.java start line: 60 end line: 69 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3172 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/dataset/DatasetMovingHandler.java start line: 57 end line: 66 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3173 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/species/SpeciesAddingHandler.java start line: 65 end line: 74 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3174 unit: public FileRegistrationHandler() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/FileRegistrationHandler.java start line: 117 end line: 126 size: 10 LOC McCabe index: 1 number of parameters: 4 id: 3175 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/FileRegistrationHandler.java start line: 165 end line: 175 size: 10 LOC McCabe index: 5 number of parameters: 0 id: 3176 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/reference/ProteinAddingHandler.java start line: 65 end line: 74 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3177 unit: protected Long loadReferenceId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 324 end line: 333 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3178 unit: protected Long loadReferenceIdFromDataset() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 370 end line: 379 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3179 unit: public void configure() file: server/catgenome/src/main/java/com/epam/catgenome/app/TomcatConfigurerImpl.java start line: 13 end line: 22 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 3180 unit: public EmbeddedServletContainerCustomizer tomcatContainerCustomizer() file: server/catgenome/src/main/java/com/epam/catgenome/app/AppMVCConfiguration.java start line: 97 end line: 106 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3181 unit: public void addResourceHandlers() file: server/catgenome/src/main/java/com/epam/catgenome/app/AppMVCConfiguration.java start line: 109 end line: 118 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3182 unit: public KeyManager keyManager() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 337 end line: 346 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3183 unit: public ExtendedMetadataDelegate extendedMetadataDelegate() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 381 end line: 390 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3184 unit: public MetadataGenerator metadataGenerator() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 405 end line: 414 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3185 unit: private static void moveQuantifierRegexpCharacter() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/RegexReverser.java start line: 75 end line: 85 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3186 unit: public final int readInt() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataInputStream.java start line: 172 end line: 181 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3187 unit: private int readAndCheckInt() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/SortableRecordCodec.java start line: 95 end line: 104 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3188 unit: public static Comparator getDefaultComparator() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/AbstractFeatureSorter.java start line: 107 end line: 116 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3189 unit: BlobServiceClientBuilder configureCredential() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 94 end line: 107 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3190 unit: private AzureBlobItem validateUri() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 158 end line: 167 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3191 unit: public BiologicalDataItemDownloadUrl generatePresignedUrl() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 206 end line: 215 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3192 unit: public static String getFileExtension() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 230 end line: 239 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3193 unit: public static CloseableIterator query() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 298 end line: 308 size: 10 LOC McCabe index: 2 number of parameters: 4 id: 3194 unit: public static void checkSorted() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 390 end line: 399 size: 10 LOC McCabe index: 3 number of parameters: 3 id: 3195 unit: public static Double getMinValue() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 588 end line: 597 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3196 unit: public static Double getMaxValue() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 599 end line: 608 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3197 unit: public static String tripletToAminoAcid() file: server/catgenome/src/main/java/com/epam/catgenome/util/ProteinSequenceUtils.java start line: 155 end line: 165 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3198 unit: private static void validateTriplet() file: server/catgenome/src/main/java/com/epam/catgenome/util/ProteinSequenceUtils.java start line: 225 end line: 234 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3199 unit: public static AbstractFeatureReader getFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 134 end line: 144 size: 10 LOC McCabe index: 2 number of parameters: 4 id: 3200 unit: public boolean contains() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/EhCacheBasedIndexCache.java start line: 73 end line: 83 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3201 unit: public T next() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixFeatureReader.java start line: 230 end line: 239 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3202 unit: public boolean hasIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 241 end line: 250 size: 10 LOC McCabe index: 4 number of parameters: 0 id: 3203 unit: public T next() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 386 end line: 395 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3204 unit: public T next() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 473 end line: 482 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3205 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 559 end line: 570 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3206 unit: public static TabixIndex createTabixIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 151 end line: 161 size: 10 LOC McCabe index: 2 number of parameters: 3 id: 3207 unit: public static void addIntIntervalFilter() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 533 end line: 542 size: 10 LOC McCabe index: 5 number of parameters: 3 id: 3208 unit: public static void addFloatIntervalFilter() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 544 end line: 553 size: 10 LOC McCabe index: 5 number of parameters: 3 id: 3209 unit: public static Set fetchGeneIdsFromBatch() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 564 end line: 573 size: 10 LOC McCabe index: 2 number of parameters: 4 id: 3210 unit: private static InputStream indexFileInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 607 end line: 616 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3211 unit: public static void addToHistogramPortion() file: server/catgenome/src/main/java/com/epam/catgenome/util/HistogramUtils.java start line: 109 end line: 119 size: 10 LOC McCabe index: 2 number of parameters: 3 id: 3212 unit: private ApiInfo apiInfo() file: server/catgenome/src/main/java/com/epam/catgenome/config/SwaggerConfig.java start line: 81 end line: 90 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3213 unit: public void initKey() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtTokenGenerator.java start line: 77 end line: 86 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3214 unit: private JwtTokenClaims validateClaims() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtTokenVerifier.java start line: 101 end line: 110 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3215 unit: public boolean isAllowedByBioItemId() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 163 end line: 172 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3216 unit: public boolean hasPermissionOnFileOrParentProject() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 170 end line: 181 size: 10 LOC McCabe index: 5 number of parameters: 4 id: 3217 unit: protected MethodSecurityExpressionOperations createSecurityExpressionRoot() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionHandler.java start line: 19 end line: 28 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 3218 unit: private AclSecuredEntry convertAclToEntryForUser() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 287 end line: 296 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 3219 unit: public void setCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 72 end line: 81 size: 10 LOC McCabe index: 8 number of parameters: 7 id: 3220 unit: public ProteinSequenceEntry() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 49 end line: 58 size: 10 LOC McCabe index: 1 number of parameters: 6 id: 3221 unit: public Sort defaultSort() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 82 end line: 91 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3222 unit: public ScoreDoc toScoreDoc() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/Pointer.java start line: 68 end line: 77 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3223 unit: public static FieldRef fromField() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/Pointer.java start line: 123 end line: 133 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3224 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/InfoItem.java start line: 92 end line: 101 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3225 unit: public GeneIndexEntry() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/GeneIndexEntry.java start line: 54 end line: 63 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3226 unit: public BookmarkIndexEntry() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/BookmarkIndexEntry.java start line: 46 end line: 55 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3227 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItemResourceType.java start line: 88 end line: 97 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3228 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Chromosome.java start line: 108 end line: 117 size: 10 LOC McCabe index: 5 number of parameters: 1 id: 3229 unit: public Optional loadUrlById() file: server/catgenome/src/main/java/com/epam/catgenome/dao/UrlShorterDao.java start line: 63 end line: 73 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3230 unit: private void insertUserGroups() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 247 end line: 257 size: 10 LOC McCabe index: 2 number of parameters: 3 id: 3231 unit: static NgbUser parseUser() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 417 end line: 428 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3232 unit: public static Map parseData() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 430 end line: 440 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3233 unit: private static String convertDataToJsonStringForQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 442 end line: 452 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3234 unit: private static BiologicalDataItem mapLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 453 end line: 462 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3235 unit: private static BiologicalDataItem mapMafFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 484 end line: 494 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 3236 unit: private static BiologicalDataItem mapVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 568 end line: 578 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 3237 unit: public List loadGeneFiles() file: server/catgenome/src/main/java/com/epam/catgenome/dao/gene/GeneFileDao.java start line: 107 end line: 118 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3238 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 603 end line: 614 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 3239 unit: static RowMapper getVcfSampleMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/vcf/VcfFileDao.java start line: 251 end line: 262 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3240 unit: private void setNodeIds() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeEdgeDao.java start line: 110 end line: 119 size: 10 LOC McCabe index: 4 number of parameters: 2 id: 3241 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeEdgeDao.java start line: 129 end line: 138 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3242 unit: static LineageTreeEdge parseLineageTreeEdge() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeEdgeDao.java start line: 144 end line: 153 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3243 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 359 end line: 370 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3244 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastDatabaseDao.java start line: 115 end line: 126 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3245 unit: public IndexSearchResult searchFileIndexes() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 442 end line: 451 size: 10 LOC McCabe index: 2 number of parameters: 3 id: 3246 unit: public List getChromosomeIdsWhereVariationsPresentFacet() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 907 end line: 916 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3247 unit: private String getFeatureName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 1210 end line: 1219 size: 10 LOC McCabe index: 4 number of parameters: 3 id: 3248 unit: public List build() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 243 end line: 252 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3249 unit: private Field buildChromosomeIdField() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/AbstractDocumentBuilder.java start line: 301 end line: 310 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3250 unit: static MapSqlParameterSource getParametersWithArrays() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 110 end line: 119 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3251 unit: protected void writeStreamToResponse() file: server/catgenome/src/main/java/com/epam/catgenome/controller/AbstractRESTController.java start line: 145 end line: 157 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 3252 unit: public static BiologicalDataItem convertFrom() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/BookmarkConverter.java start line: 126 end line: 136 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3253 unit: public static Track convertToTrack() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/Query2TrackConverter.java start line: 82 end line: 91 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3254 unit: public Result loadVariation() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vcf/VcfController.java start line: 191 end line: 200 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3255 unit: public static T parseData() file: server/catgenome/src/main/java/com/epam/catgenome/controller/JsonMapper.java start line: 124 end line: 134 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3256 unit: public MafFeature decode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/MafCodec.java start line: 82 end line: 91 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3257 unit: private MafFile downloadMafFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafManager.java start line: 132 end line: 141 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3258 unit: public MafFile updateMafFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafManager.java start line: 188 end line: 200 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3259 unit: public V floor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 141 end line: 151 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3260 unit: public V next() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 163 end line: 172 size: 10 LOC McCabe index: 4 number of parameters: 0 id: 3261 unit: private BedFile downloadBedFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 312 end line: 321 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3262 unit: private List loadHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 496 end line: 505 size: 10 LOC McCabe index: 2 number of parameters: 3 id: 3263 unit: public AsciiFeatureCodec getCodec() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 629 end line: 638 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3264 unit: private void parseAndSetBlockStarts() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 154 end line: 163 size: 10 LOC McCabe index: 3 number of parameters: 3 id: 3265 unit: private void parseAndSetBlockSizes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 166 end line: 175 size: 10 LOC McCabe index: 3 number of parameters: 3 id: 3266 unit: private void parseAndSetScore() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 204 end line: 213 size: 10 LOC McCabe index: 4 number of parameters: 3 id: 3267 unit: public LLMService() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/LLMService.java start line: 54 end line: 63 size: 10 LOC McCabe index: 1 number of parameters: 4 id: 3268 unit: public String getSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/GCPPaLM2.java start line: 95 end line: 104 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 3269 unit: public void savePerson() file: server/catgenome/src/main/java/com/epam/catgenome/manager/person/PersonManager.java start line: 57 end line: 67 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3270 unit: private void fillBlocksFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigProcessor.java start line: 120 end line: 129 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 3271 unit: private double getNewArrays() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigProcessor.java start line: 159 end line: 168 size: 10 LOC McCabe index: 2 number of parameters: 4 id: 3272 unit: private void refreshForNewFrame() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/StandardSAMRecordSifter.java start line: 185 end line: 194 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3273 unit: public void writeRecord() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamTrackEmitter.java start line: 73 end line: 85 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3274 unit: public void finishWithException() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamTrackEmitter.java start line: 113 end line: 122 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3275 unit: public void sendBamTrackToEmitter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamManager.java start line: 169 end line: 178 size: 10 LOC McCabe index: 2 number of parameters: 3 id: 3276 unit: public List reconstructCdsProteinSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceReconstructionManager.java start line: 139 end line: 148 size: 10 LOC McCabe index: 1 number of parameters: 4 id: 3277 unit: public void setManagers() file: server/catgenome/src/main/java/com/epam/catgenome/manager/CompositeSecuredEntityManager.java start line: 47 end line: 56 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3278 unit: public static AbstractGeneReader createGeneReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 126 end line: 135 size: 10 LOC McCabe index: 2 number of parameters: 4 id: 3279 unit: private GeneFileType determineGeneFileTypeForIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 662 end line: 671 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3280 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 244 end line: 258 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3281 unit: private Gff3FeatureImpl buildGeneGffFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsToGffConvertor.java start line: 157 end line: 166 size: 10 LOC McCabe index: 1 number of parameters: 7 id: 3282 unit: private BiologicalDataItem createIndexItem() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 437 end line: 447 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3283 unit: public List convertGeneTrackForClient() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 550 end line: 560 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3284 unit: private void writeHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 688 end line: 697 size: 10 LOC McCabe index: 3 number of parameters: 3 id: 3285 unit: private void attachMetadataToProject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 572 end line: 583 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3286 unit: public File downloadFromURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/DownloadFileManager.java start line: 96 end line: 105 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3287 unit: private List getFilterWhiteHostList() file: server/catgenome/src/main/java/com/epam/catgenome/manager/DownloadFileManager.java start line: 186 end line: 195 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3288 unit: private int getEndWithBounds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 250 end line: 259 size: 10 LOC McCabe index: 3 number of parameters: 3 id: 3289 unit: private VcfFile makeTemporaryVcfFileFromUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 566 end line: 576 size: 10 LOC McCabe index: 2 number of parameters: 3 id: 3290 unit: private List getFilterWhiteList() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 605 end line: 614 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3291 unit: private void extendInfoFields() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 933 end line: 942 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3292 unit: public void sendNotification() file: server/catgenome/src/main/java/com/epam/catgenome/manager/cloud/pipeline/CloudPipelineManager.java start line: 65 end line: 74 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3293 unit: private void writeExon() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genepred/GenePredManager.java start line: 135 end line: 145 size: 10 LOC McCabe index: 1 number of parameters: 4 id: 3294 unit: public int countGenesInInterval() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 444 end line: 453 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3295 unit: public GeneFilterInfo getAvailableGeneFieldsToSearch() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 494 end line: 503 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3296 unit: public IndexSearchResult searchFeaturesByReference() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 530 end line: 541 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3297 unit: public void setEnsemblIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 438 end line: 447 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3298 unit: public ParameterNameValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ParameterNameValue.java start line: 43 end line: 56 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3299 unit: private static List ensemblExonVO2BaseGaneEntityList() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ExtenalDBUtils.java start line: 134 end line: 143 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3300 unit: private static List ensemblUtrVO2BaseGeneEntityList() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ExtenalDBUtils.java start line: 160 end line: 169 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3301 unit: private void parseOtherSource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 277 end line: 289 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3302 unit: public String getProteinsFasta() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBISequencesManager.java start line: 46 end line: 55 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3303 unit: public NCBITaxonomyVO fetchTaxonomyInfoById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIAuxiliaryManager.java start line: 67 end line: 76 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3304 unit: private void parseJsonFromHomolog() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneManager.java start line: 337 end line: 346 size: 10 LOC McCabe index: 3 number of parameters: 3 id: 3305 unit: public String getArticleAbstracts() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/PubMedService.java start line: 148 end line: 157 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3306 unit: private SearchResult parse() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbEntriesManager.java start line: 110 end line: 119 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3307 unit: private StructureRequest getProteinChainsRequest() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbEntriesManager.java start line: 213 end line: 222 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3308 unit: private StructureRequest getAllStructuresRequest() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbEntriesManager.java start line: 225 end line: 234 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3309 unit: private void validateOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 245 end line: 254 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3310 unit: public Query buildQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 168 end line: 177 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3311 unit: private String getBioPAXDirectory() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 290 end line: 299 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3312 unit: private PathwayDatabaseSource getDatabaseSource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 444 end line: 453 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3313 unit: private void writeSegFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegManager.java start line: 271 end line: 281 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3314 unit: public SegFeature decode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/SegCodec.java start line: 57 end line: 66 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3315 unit: public void deleteReferenceDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 398 end line: 408 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3316 unit: private File tryGetHelperGeneIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1291 end line: 1301 size: 10 LOC McCabe index: 2 number of parameters: 5 id: 3317 unit: public void makeNibIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1466 end line: 1475 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 3318 unit: public AbstractFeatureReader makeSegReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1643 end line: 1652 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3319 unit: public BufferedWriter makeSegFileWriter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1725 end line: 1738 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3320 unit: public AbstractFeatureReader makeMafReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1745 end line: 1754 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3321 unit: public void writeToBigWigFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1878 end line: 1889 size: 10 LOC McCabe index: 1 number of parameters: 4 id: 3322 unit: public void deleteFeatureFileDirectory() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1951 end line: 1962 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3323 unit: public void updateRowTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 156 end line: 165 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3324 unit: public void updateColumnTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 168 end line: 177 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3325 unit: private void checkTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 480 end line: 489 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3326 unit: private void prepareMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/manager/metadata/MetadataManager.java start line: 108 end line: 117 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3327 unit: public ChromosomeReferenceSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/ChromosomeReferenceSequence.java start line: 64 end line: 73 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 3328 unit: public static BufferedReader openBufferedReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaUtils.java start line: 36 end line: 45 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3329 unit: public void byteArrayToGCFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataWriter.java start line: 111 end line: 122 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3330 unit: private void writeGCHead() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataWriter.java start line: 135 end line: 145 size: 10 LOC McCabe index: 2 number of parameters: 3 id: 3331 unit: public Track getNucleotidesResultFromNib() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 138 end line: 147 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3332 unit: private List getReferenceSequenceWithoutGC() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 514 end line: 523 size: 10 LOC McCabe index: 2 number of parameters: 6 id: 3333 unit: public List loadAllReferenceGenomesByTaxId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 281 end line: 290 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3334 unit: public Reference updateSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 366 end line: 376 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3335 unit: private Integer getChromosomeIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 606 end line: 615 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3336 unit: public List loadBookmarksByIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/BookmarkManager.java start line: 122 end line: 133 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3337 unit: set authenticationMode() file: client/client/dataServices/data-service.js start line: 17 end line: 26 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3338 unit: function removeQuotas() file: client/client/dataServices/utils/highlight-condition-service.js start line: 273 end line: 282 size: 10 LOC McCabe index: 5 number of parameters: 2 id: 3339 unit: getCachedUsers() file: client/client/dataServices/user/user-data-service.js start line: 24 end line: 33 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3340 unit: getNodeAclClass() file: client/client/dataServices/project/project-data-service.js start line: 9 end line: 18 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3341 unit: toggleTrack() file: client/client/app/shared/bamCoverageContext/index.js start line: 40 end line: 49 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3342 unit: onTracksStateChangedForBrowser() file: client/client/app/shared/selectionContext/index.js start line: 74 end line: 83 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3343 unit: debounce() file: client/client/app/shared/utils/debounce.js start line: 6 end line: 15 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 3344 unit: fetchDefaultRolesData() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 111 end line: 120 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3345 unit: getUserInfo() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 182 end line: 191 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3346 unit: fetchUsers() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 80 end line: 89 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3347 unit: openDlg() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagement.controller.js start line: 15 end line: 25 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3348 unit: value: getFullPath() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 195 end line: 242 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3349 unit: controller: function() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFile.controller.js start line: 50 end line: 59 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 3350 unit: fileExtension() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromUrl/ngbOpenFileFromUrl.controller.js start line: 60 end line: 69 size: 10 LOC McCabe index: 4 number of parameters: 0 id: 3351 unit: constructor() file: client/client/app/shared/components/ngbMainToolbar/ngbToolWindows/ngbToolWindows.controller.js start line: 18 end line: 27 size: 10 LOC McCabe index: 1 number of parameters: 6 id: 3352 unit: _mergeDefaultFeatures() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 83 end line: 92 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3353 unit: _pickOutColor() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 114 end line: 123 size: 10 LOC McCabe index: 5 number of parameters: 2 id: 3354 unit: $onDestroy() file: client/client/app/shared/components/ngbFloatingPanel/controller.js start line: 64 end line: 73 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3355 unit: onMouseMove() file: client/client/app/shared/components/ngbFloatingPanel/controller.js start line: 121 end line: 130 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3356 unit: $scope.ok = function() file: client/client/app/shared/components/ngbLLM/ngbLLM.dialog.run.js start line: 46 end line: 55 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3357 unit: async setModels() file: client/client/app/shared/components/ngbLLM/ngbLLM.controller.js start line: 98 end line: 107 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3358 unit: panelRemoveExtraWindows() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 704 end line: 715 size: 10 LOC McCabe index: 5 number of parameters: 0 id: 3359 unit: inputChanged() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 181 end line: 190 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3360 unit: chromosomeKeyUp() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 252 end line: 261 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3361 unit: coordinatesKeyUp() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 263 end line: 272 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3362 unit: didTypeCoordinates() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 274 end line: 283 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3363 unit: loadVariantSnpInfo() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantDbSnp/ngbVariantDbSnp.service.js start line: 19 end line: 29 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 3364 unit: constructor() file: client/client/app/shared/components/ngbHeader/ngbShareLinkMenu/ngbShareLinkMenu.controller.js start line: 20 end line: 31 size: 10 LOC McCabe index: 1 number of parameters: 5 id: 3365 unit: get resourceDownloadAvailable() file: client/client/app/shared/projectContext/index.js start line: 669 end line: 678 size: 10 LOC McCabe index: 4 number of parameters: 0 id: 3366 unit: changeViewportState() file: client/client/app/shared/projectContext/index.js start line: 1232 end line: 1241 size: 10 LOC McCabe index: 3 number of parameters: 3 id: 3367 unit: async _changeTracksState() file: client/client/app/shared/projectContext/index.js start line: 1595 end line: 1604 size: 10 LOC McCabe index: 5 number of parameters: 1 id: 3368 unit: function sortItems() file: client/client/app/shared/projectContext/index.js start line: 2070 end line: 2092 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3369 unit: getPathParams() file: client/client/app/shared/services/stateParams.service.js start line: 20 end line: 30 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3370 unit: setGlobalSettings() file: client/client/app/shared/services/api.service.js start line: 192 end line: 201 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3371 unit: _fileExtension() file: client/client/app/shared/services/api.service.js start line: 372 end line: 381 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3372 unit: INIT() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantQualityDiagram/ngbVariantQualityDiagram.controller.js start line: 65 end line: 74 size: 10 LOC McCabe index: 4 number of parameters: 0 id: 3373 unit: constructor() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/nvd3-chart-controller.js start line: 2 end line: 11 size: 10 LOC McCabe index: 1 number of parameters: 5 id: 3374 unit: INIT() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantTypeDiagram/ngbVariantTypeDiagram.controller.js start line: 101 end line: 110 size: 10 LOC McCabe index: 4 number of parameters: 0 id: 3375 unit: setDescriptions() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 162 end line: 171 size: 10 LOC McCabe index: 4 number of parameters: 0 id: 3376 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 17 end line: 27 size: 10 LOC McCabe index: 1 number of parameters: 4 id: 3377 unit: getColorForScore() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 112 end line: 121 size: 10 LOC McCabe index: 2 number of parameters: 3 id: 3378 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterInput/ngbDiseasesFilterInput.controller.js start line: 5 end line: 15 size: 10 LOC McCabe index: 2 number of parameters: 3 id: 3379 unit: queryName: getName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 157 end line: 167 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3380 unit: initialize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsAlignment/ngbGenomicsAlignment.controller.js start line: 43 end line: 52 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3381 unit: get drugModelChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 202 end line: 211 size: 10 LOC McCabe index: 4 number of parameters: 0 id: 3382 unit: onClickSearch() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 152 end line: 161 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3383 unit: get proteinModelChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 164 end line: 173 size: 10 LOC McCabe index: 4 number of parameters: 0 id: 3384 unit: async getBlastSearch() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 447 end line: 456 size: 10 LOC McCabe index: 5 number of parameters: 0 id: 3385 unit: getItemDisplayName() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetAddUserRoleDlg.controller.js start line: 67 end line: 76 size: 10 LOC McCabe index: 6 number of parameters: 1 id: 3386 unit: getUserInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.service.js start line: 76 end line: 85 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3387 unit: setPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTablePaginate/ngbTargetsTablePaginate.controller.js start line: 34 end line: 43 size: 10 LOC McCabe index: 4 number of parameters: 2 id: 3388 unit: async getDataOnPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 273 end line: 282 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3389 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.controller.js start line: 7 end line: 17 size: 10 LOC McCabe index: 1 number of parameters: 4 id: 3390 unit: getAddParasiteRequest() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 519 end line: 528 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3391 unit: getAdditionalGenesForRequest() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 530 end line: 539 size: 10 LOC McCabe index: 5 number of parameters: 1 id: 3392 unit: template: require() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 257 end line: 266 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3393 unit: async filterChanged() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 679 end line: 688 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3394 unit: saveChangesCallBack() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 732 end line: 741 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3395 unit: controller: function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 746 end line: 755 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 3396 unit: name: getName() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 344 end line: 353 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3397 unit: constructor() file: client/client/app/components/ngbHomologsPanel/ngbHomologsDomains/ngbHomologsDomains.controller.js start line: 14 end line: 23 size: 10 LOC McCabe index: 1 number of parameters: 4 id: 3398 unit: rowClick() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.controller.js start line: 121 end line: 130 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3399 unit: rowClick() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.controller.js start line: 121 end line: 130 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3400 unit: constructor() file: client/client/app/components/ngbSashimiPlot/ngbSashimiPlot.controller.js start line: 33 end line: 42 size: 10 LOC McCabe index: 1 number of parameters: 6 id: 3401 unit: $onDestroy() file: client/client/app/components/ngbSashimiPlot/ngbSashimiPlot.controller.js start line: 52 end line: 61 size: 10 LOC McCabe index: 6 number of parameters: 0 id: 3402 unit: up() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 133 end line: 143 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3403 unit: down() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 145 end line: 154 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3404 unit: sortByName() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 156 end line: 165 size: 10 LOC McCabe index: 4 number of parameters: 0 id: 3405 unit: helper: function() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 186 end line: 197 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3406 unit: checkUserRole() file: client/client/app/components/ngbDataSets/internal/ngbDataSetContextMenu/ngbDataSetContextMenu.controller.js start line: 30 end line: 39 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3407 unit: getItemDisplayName() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbAddUserRoleDlg.controller.js start line: 74 end line: 83 size: 10 LOC McCabe index: 6 number of parameters: 1 id: 3408 unit: save() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbAddUserRoleDlg.controller.js start line: 120 end line: 129 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3409 unit: fetchPermissions() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 188 end line: 197 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3410 unit: getUserInfo() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.service.js start line: 82 end line: 91 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3411 unit: async loadingFinished() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 93 end line: 102 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3412 unit: restoreState() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 363 end line: 372 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3413 unit: constructor() file: client/client/app/components/ngbMolecularViewer/ngbPdbDescription/ngbPdbDescription.controller.js start line: 10 end line: 21 size: 10 LOC McCabe index: 2 number of parameters: 4 id: 3414 unit: apply() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterInput/ngbVariantsFilterInput.controller.js start line: 16 end line: 25 size: 10 LOC McCabe index: 5 number of parameters: 0 id: 3415 unit: onColumnChange() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableColumn/ngbVariantsTableColumn.controller.js start line: 86 end line: 95 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3416 unit: async restoreState() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 274 end line: 283 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3417 unit: async setSearchRequest() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/ngbBlastSearchForm.controller.js start line: 102 end line: 111 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3418 unit: rowClick() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistory.controller.js start line: 139 end line: 148 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3419 unit: constructor() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResult.controller.js start line: 21 end line: 30 size: 10 LOC McCabe index: 1 number of parameters: 4 id: 3420 unit: export default function run() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastWholeGenomeView/ngbBlastWholeGenomeView.run.js start line: 3 end line: 12 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 3421 unit: changeState() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.controller.js start line: 33 end line: 42 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3422 unit: get ncbiUrl() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignmentList.controller.js start line: 21 end line: 30 size: 10 LOC McCabe index: 5 number of parameters: 0 id: 3423 unit: $onDestroy() file: client/client/app/components/ngbTracksView/ngbTracksView.controller.js start line: 119 end line: 128 size: 10 LOC McCabe index: 6 number of parameters: 0 id: 3424 unit: template: require() file: client/client/app/components/ngbTracksView/ngbTracksView.component.js start line: 5 end line: 14 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3425 unit: template: require() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackSettings.component.js start line: 5 end line: 14 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3426 unit: handleField() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackSettings.controller.js start line: 102 end line: 111 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3427 unit: handleButtonField() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackSettings.controller.js start line: 113 end line: 122 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3428 unit: handleNameInputKeydown() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 358 end line: 367 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3429 unit: constructor() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.events.js start line: 11 end line: 20 size: 10 LOC McCabe index: 1 number of parameters: 8 id: 3430 unit: function parseConfigHeatmap() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.service.js start line: 54 end line: 63 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3431 unit: deleteAnnotation() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.controller.js start line: 126 end line: 135 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3432 unit: annotateNode() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbInternalPathwayNode.service.js start line: 20 end line: 29 size: 10 LOC McCabe index: 4 number of parameters: 2 id: 3433 unit: navigateToDataset() file: client/client/app/components/ngbStrainLineage/ngbStrainLineageNode/ngbStrainLineageNode.controller.js start line: 81 end line: 90 size: 10 LOC McCabe index: 6 number of parameters: 2 id: 3434 unit: function dateString() file: client/client/app/components/ngbStrainLineage/dateFilter.js start line: 3 end line: 12 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3435 unit: function wrapNode() file: client/client/app/components/ngbStrainLineage/ngbCytoscape/ngbCytoscape.controller.js start line: 93 end line: 103 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3436 unit: navigateToReference() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.controller.js start line: 202 end line: 211 size: 10 LOC McCabe index: 6 number of parameters: 2 id: 3437 unit: sortTracksWithCustomName() file: client/client/app/components/ngbTracksSelection/ngbTracksSelection.controller.js start line: 137 end line: 146 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3438 unit: export default function extractFeaturesForTrack() file: client/client/modules/render/core/configuration/featureManager.js start line: 1 end line: 10 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3439 unit: tick() file: client/client/modules/render/core/track/track.js start line: 129 end line: 138 size: 10 LOC McCabe index: 5 number of parameters: 1 id: 3440 unit: headerStyleSettingsChanged() file: client/client/modules/render/core/track/track.js start line: 490 end line: 499 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3441 unit: hide() file: client/client/modules/render/core/track/tooltip.js start line: 70 end line: 79 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3442 unit: _onDoubleClick() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 150 end line: 159 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3443 unit: canScroll() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRendererWIthVerticalScroll.js start line: 95 end line: 104 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3444 unit: start: parseFloat() file: client/client/modules/render/core/viewport/viewport.js start line: 378 end line: 388 size: 10 LOC McCabe index: 5 number of parameters: 1 id: 3445 unit: constructor() file: client/client/modules/render/core/labelsManager/index.js start line: 8 end line: 21 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 3446 unit: getKeys() file: client/client/modules/render/core/labelsManager/index.js start line: 76 end line: 85 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3447 unit: static findBestStep() file: client/client/modules/render/whole-genome-render/partials/scale/scaleTransformer.js start line: 22 end line: 33 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3448 unit: createAxis() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 83 end line: 92 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 3449 unit: activateMask() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 127 end line: 136 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3450 unit: toggleChromosomeExpand() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 166 end line: 175 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3451 unit: constructor() file: client/client/modules/render/tracks/bed/internal/renderer/features/featureRenderer.js start line: 8 end line: 17 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 3452 unit: getStructureNotEmptyBlocksLength() file: client/client/modules/render/tracks/bed/internal/data/bedTransformer.js start line: 159 end line: 168 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3453 unit: get renderer() file: client/client/modules/render/tracks/bed/index.js start line: 90 end line: 99 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3454 unit: static findBestStep() file: client/client/modules/render/tracks/wig/wigTransformer.js start line: 316 end line: 327 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3455 unit: _scaledRect() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 583 end line: 592 size: 10 LOC McCabe index: 1 number of parameters: 5 id: 3456 unit: canSetYPosition() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 123 end line: 132 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3457 unit: get downsampleIndicatorsTopMargin() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 144 end line: 153 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3458 unit: function createDiffBaseRender() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 133 end line: 142 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3459 unit: function createSoftClipRender() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 144 end line: 153 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3460 unit: insertSize: getInsertSizeType() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 283 end line: 294 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3461 unit: alignmentsVisibilityChanged() file: client/client/modules/render/tracks/bam/index.js start line: 451 end line: 460 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3462 unit: async nextMotif() file: client/client/modules/render/tracks/motifs/index.js start line: 243 end line: 252 size: 10 LOC McCabe index: 5 number of parameters: 0 id: 3463 unit: async prevMotif() file: client/client/modules/render/tracks/motifs/index.js start line: 254 end line: 263 size: 10 LOC McCabe index: 5 number of parameters: 0 id: 3464 unit: constructor() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/aminoacidFeatureRenderer.js start line: 38 end line: 47 size: 10 LOC McCabe index: 1 number of parameters: 5 id: 3465 unit: updateAvailableFeatures() file: client/client/modules/render/tracks/gene/index.js start line: 165 end line: 174 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3466 unit: get renderers() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/featureRenderer.js start line: 85 end line: 94 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3467 unit: get scrollerHeight() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/scroll.js start line: 37 end line: 46 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3468 unit: value: getNucleotideData() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/coverage.js start line: 88 end line: 97 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3469 unit: buildVariantAlternativeAlleles() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 143 end line: 152 size: 10 LOC McCabe index: 4 number of parameters: 2 id: 3470 unit: unhover() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 489 end line: 498 size: 10 LOC McCabe index: 4 number of parameters: 0 id: 3471 unit: constructor() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/baseContainer.js start line: 40 end line: 51 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 3472 unit: _getZoomInPlaceholderText() file: client/client/modules/render/tracks/vcf/index.js start line: 234 end line: 243 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3473 unit: get transformer() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 70 end line: 79 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3474 unit: render() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 146 end line: 155 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3475 unit: onDragStart() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 286 end line: 295 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3476 unit: constructor() file: client/client/modules/render/tracks/featureCounts/internal/renderer/features/featureCountRenderer.js start line: 8 end line: 17 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 3477 unit: get renderer() file: client/client/modules/render/tracks/featureCounts/index.js start line: 96 end line: 105 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3478 unit: constructor() file: client/client/modules/render/tracks/blast/renderer.js start line: 14 end line: 23 size: 10 LOC McCabe index: 1 number of parameters: 4 id: 3479 unit: onMouseOut() file: client/client/modules/render/tracks/blast/index.js start line: 89 end line: 98 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3480 unit: constructor() file: client/client/modules/render/tracks/comparison/renderer.js start line: 10 end line: 19 size: 10 LOC McCabe index: 1 number of parameters: 4 id: 3481 unit: onMouseOut() file: client/client/modules/render/tracks/comparison/index.js start line: 68 end line: 77 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3482 unit: async updateCache() file: client/client/modules/render/tracks/seg/index.js start line: 50 end line: 59 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3483 unit: static trimTextToFitWidth() file: client/client/modules/render/utilities/pixiTextSize.js start line: 23 end line: 32 size: 10 LOC McCabe index: 5 number of parameters: 3 id: 3484 unit: configureZone() file: client/client/modules/render/utilities/zonesManager.js start line: 18 end line: 27 size: 10 LOC McCabe index: 2 number of parameters: 2 id: 3485 unit: static _getAreasPoints() file: client/client/modules/render/utilities/zonesManager.js start line: 277 end line: 286 size: 10 LOC McCabe index: 3 number of parameters: 3 id: 3486 unit: function getZoneDistance() file: client/client/modules/render/utilities/zonesManager.js start line: 345 end line: 354 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3487 unit: export function getDivider() file: client/client/modules/render/utilities/menu/divider.js start line: 1 end line: 10 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3488 unit: registerInteractiveZone() file: client/client/modules/render/heatmap/interactions/index.js start line: 95 end line: 104 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3489 unit: render() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/index.js start line: 91 end line: 100 size: 10 LOC McCabe index: 5 number of parameters: 0 id: 3490 unit: export default function getNodeIsCollapsed() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/utilities/get-node-is-collapsed.js start line: 10 end line: 19 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 3491 unit: get totalSize() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/binary-tree-graphics.js start line: 49 end line: 58 size: 10 LOC McCabe index: 4 number of parameters: 0 id: 3492 unit: onDrag() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 304 end line: 313 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3493 unit: getDragValue() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 148 end line: 157 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 3494 unit: pointOverAxis() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 262 end line: 271 size: 10 LOC McCabe index: 5 number of parameters: 1 id: 3495 unit: constructor() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 496 end line: 505 size: 10 LOC McCabe index: 1 number of parameters: 4 id: 3496 unit: constructor() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 542 end line: 551 size: 10 LOC McCabe index: 1 number of parameters: 4 id: 3497 unit: startUnHover() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 36 end line: 45 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3498 unit: set hovered() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 51 end line: 60 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3499 unit: colorSchemeChanged() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 211 end line: 220 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3500 unit: rebuild() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 222 end line: 231 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3501 unit: renderBlocks() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 489 end line: 498 size: 10 LOC McCabe index: 4 number of parameters: 0 id: 3502 unit: destroy() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/webgl-graphics.js start line: 30 end line: 39 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3503 unit: appendGraphics() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/webgl-graphics.js start line: 123 end line: 132 size: 10 LOC McCabe index: 6 number of parameters: 2 id: 3504 unit: clearGraphics() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry.js start line: 98 end line: 107 size: 10 LOC McCabe index: 3 number of parameters: 0 id: 3505 unit: export function getVertexShader() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/helpers.js start line: 42 end line: 60 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3506 unit: export function getFragmentShader() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/helpers.js start line: 62 end line: 78 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3507 unit: batchUpdateDone() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 401 end line: 410 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3508 unit: getSessionFlags() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 451 end line: 460 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3509 unit: getViewportPoint() file: client/client/modules/render/heatmap/viewport/index.js start line: 169 end line: 178 size: 10 LOC McCabe index: 2 number of parameters: 1 id: 3510 unit: getColumnOrder() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 297 end line: 306 size: 10 LOC McCabe index: 5 number of parameters: 1 id: 3511 unit: getColumnOriginalOrder() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 308 end line: 317 size: 10 LOC McCabe index: 5 number of parameters: 1 id: 3512 unit: getRowOrder() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 319 end line: 328 size: 10 LOC McCabe index: 5 number of parameters: 1 id: 3513 unit: getRowOriginalOrder() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 330 end line: 339 size: 10 LOC McCabe index: 5 number of parameters: 1 id: 3514 unit: serialize() file: client/client/modules/render/heatmap/heatmap-data/heatmap-data-type.js start line: 37 end line: 46 size: 10 LOC McCabe index: 4 number of parameters: 2 id: 3515 unit: function parseDataItemAsObject() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 39 end line: 48 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3516 unit: function fitRadians() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 112 end line: 121 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3517 unit: export function moveSection() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 265 end line: 274 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 3518 unit: metadataLoaded() file: client/client/modules/render/heatmap/heatmap-view.js start line: 214 end line: 223 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3519 unit: ensureOptionsRenderer() file: client/client/modules/render/heatmap/heatmap-view.js start line: 314 end line: 327 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3520 unit: getSimpleGradient() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 211 end line: 220 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3521 unit: constructor() file: client/client/modules/render/variant-render/renderers/drawing/feature-cut-off/cut-off-graphics.js start line: 18 end line: 27 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3522 unit: constructor() file: client/client/modules/render/variant-render/renderers/base-renderer.js start line: 18 end line: 27 size: 10 LOC McCabe index: 1 number of parameters: 6 id: 3523 unit: resizeRenderer() file: client/client/modules/render/variant-render/variant-renderer.js start line: 190 end line: 200 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 3524 unit: export function useExpander() file: export-templates/target-identification/src/sections/main/expandable-text.tsx start line: 18 end line: 27 size: 10 LOC McCabe index: 1 number of parameters: 0 id: 3525 unit: function getSelectOptionProps() file: export-templates/target-identification/src/common/select/index.tsx start line: 107 end line: 116 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3526 unit: export function useSequencesData() file: export-templates/target-identification/src/model/main.ts start line: 92 end line: 101 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 3527 unit: function setListFilterSelectedValues() file: export-templates/target-identification/src/model/filtered-data.ts start line: 136 end line: 145 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 3528 unit: function setNumberFilterFromValue() file: export-templates/target-identification/src/model/filtered-data.ts start line: 147 end line: 156 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 3529 unit: function setNumberFilterToValue() file: export-templates/target-identification/src/model/filtered-data.ts start line: 158 end line: 167 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 3530 unit: function filterDataItem() file: export-templates/target-identification/src/model/filtered-data.ts start line: 206 end line: 215 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 3531 unit: private void getItemFormat() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BlastDatabase.java start line: 84 end line: 92 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3532 unit: private Integer calculateItemsCount() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 179 end line: 187 size: 9 LOC McCabe index: 4 number of parameters: 0 id: 3533 unit: static file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItemResourceType.java start line: 51 end line: 59 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3534 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractEntityRenameHandler.java start line: 57 end line: 65 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3535 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/species/SpeciesRemovingHandler.java start line: 58 end line: 66 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3536 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/gene/GeneRemovingHandler.java start line: 58 end line: 66 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3537 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/heatmap/AbstractHeatmapUpdateHandler.java start line: 55 end line: 63 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3538 unit: private static String convertToPrettyMask() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/PrintPermissionsHelper.java start line: 118 end line: 126 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3539 unit: private int mergeMaskForPermission() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/GrantPermissionHandler.java start line: 216 end line: 225 size: 9 LOC McCabe index: 2 number of parameters: 3 id: 3540 unit: protected MethodSecurityExpressionHandler createExpressionHandler() file: server/catgenome/src/main/java/com/epam/catgenome/app/AclSecurityConfiguration.java start line: 82 end line: 90 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3541 unit: public SAMLProcessorImpl processor() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 541 end line: 549 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3542 unit: private FeatureCodecHeader readHeader() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureIterator.java start line: 120 end line: 128 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3543 unit: static T execute() file: server/catgenome/src/main/java/com/epam/catgenome/util/QueryUtils.java start line: 43 end line: 52 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3544 unit: public boolean hasNext() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/ReversingRegexMotifSearchIterator.java start line: 63 end line: 71 size: 9 LOC McCabe index: 4 number of parameters: 0 id: 3545 unit: private AzureBlobItem parseUri() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 170 end line: 178 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3546 unit: public static boolean resourceExists() file: server/catgenome/src/main/java/com/epam/catgenome/util/IOHelper.java start line: 94 end line: 102 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3547 unit: public static InputStream openStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/IOHelper.java start line: 104 end line: 112 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3548 unit: public static String getFileExtension() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 155 end line: 164 size: 9 LOC McCabe index: 6 number of parameters: 1 id: 3549 unit: public List extractHeaderFromLine() file: server/catgenome/src/main/java/com/epam/catgenome/util/InfoFieldParser.java start line: 49 end line: 57 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3550 unit: public List extractDataFromLine() file: server/catgenome/src/main/java/com/epam/catgenome/util/InfoFieldParser.java start line: 59 end line: 67 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3551 unit: public List extractDataFromLine() file: server/catgenome/src/main/java/com/epam/catgenome/util/InfoFieldParser.java start line: 134 end line: 145 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3552 unit: private GeneratePresignedUrlRequest generatePresignedUrlRequest() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 227 end line: 235 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3553 unit: public SeekableStream getInMemorySeekableStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3SeekableStreamFactory.java start line: 74 end line: 84 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3554 unit: public IndexCache getFromCache() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/EhCacheBasedIndexCache.java start line: 55 end line: 64 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3555 unit: public TabixFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixFeatureReader.java start line: 77 end line: 87 size: 9 LOC McCabe index: 1 number of parameters: 4 id: 3556 unit: private IteratorImpl() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 497 end line: 506 size: 9 LOC McCabe index: 1 number of parameters: 4 id: 3557 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 684 end line: 692 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3558 unit: public static IntervalTreeIndex createIntervalIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 163 end line: 171 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3559 unit: public LocationAware makeIndexableSourceFromStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 254 end line: 262 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3560 unit: private FeatureCodecHeader readHeader() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 264 end line: 272 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3561 unit: public static void deleteIndexDocument() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 523 end line: 531 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 3562 unit: public SeekableStream getStreamFor() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbSeekableStreamFactory.java start line: 61 end line: 69 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3563 unit: public SeekableStream getStreamFor() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbSeekableStreamFactory.java start line: 72 end line: 80 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3564 unit: public JwtTokenVerifier() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtTokenVerifier.java start line: 59 end line: 67 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3565 unit: public JwtTokenClaims toClaims() file: server/catgenome/src/main/java/com/epam/catgenome/security/UserContext.java start line: 81 end line: 89 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3566 unit: public boolean isAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 151 end line: 161 size: 9 LOC McCabe index: 3 number of parameters: 3 id: 3567 unit: public Integer getPermissionsMask() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 232 end line: 240 size: 9 LOC McCabe index: 3 number of parameters: 4 id: 3568 unit: private boolean filterTree() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 212 end line: 220 size: 9 LOC McCabe index: 3 number of parameters: 3 id: 3569 unit: private int findSidEntry() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 298 end line: 306 size: 9 LOC McCabe index: 3 number of parameters: 2 id: 3570 unit: public Track() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Track.java start line: 60 end line: 68 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3571 unit: public static JwtRawToken fromHeader() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/JwtRawToken.java start line: 45 end line: 55 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3572 unit: public String getEmail() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/NgbUser.java start line: 69 end line: 77 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3573 unit: public BamQueryOption() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 90 end line: 98 size: 9 LOC McCabe index: 1 number of parameters: 5 id: 3574 unit: public GeneLowLevel() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneLowLevel.java start line: 72 end line: 81 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3575 unit: private void addFeatureIdFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 131 end line: 140 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3576 unit: private void addVcfFileFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 249 end line: 257 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3577 unit: private void tryAddFloatingKeyFalueFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 285 end line: 293 size: 9 LOC McCabe index: 5 number of parameters: 5 id: 3578 unit: private void tryAddIntegralKeyValueFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 295 end line: 303 size: 9 LOC McCabe index: 5 number of parameters: 5 id: 3579 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VariationType.java start line: 85 end line: 93 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3580 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VariationType.java start line: 95 end line: 103 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3581 unit: public InfoItem() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/InfoItem.java start line: 57 end line: 65 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3582 unit: public FeatureIndexEntry() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/FeatureIndexEntry.java start line: 69 end line: 77 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3583 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/person/PersonDao.java start line: 124 end line: 134 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3584 unit: public NgbUser loadUserByName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 95 end line: 103 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3585 unit: private void removeNotPresentUserGroups() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 259 end line: 268 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 3586 unit: public Role createRole() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 79 end line: 89 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 3587 unit: private static BiologicalDataItem mapSegFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 497 end line: 506 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3588 unit: private static BiologicalDataItem mapBedFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 509 end line: 518 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3589 unit: public void saveProject() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 130 end line: 138 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3590 unit: public void moveProjectToParent() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 258 end line: 268 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3591 unit: public ProjectItem mapRow() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 754 end line: 764 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3592 unit: public List loadVcfFiles() file: server/catgenome/src/main/java/com/epam/catgenome/dao/vcf/VcfFileDao.java start line: 127 end line: 137 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3593 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bucket/BucketDao.java start line: 108 end line: 118 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3594 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bucket/BucketDao.java start line: 120 end line: 129 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3595 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeDao.java start line: 144 end line: 152 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3596 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 329 end line: 339 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3597 unit: public static LuceneIndexSearcher getIndexSearcher() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/searcher/AbstractIndexSearcher.java start line: 63 end line: 72 size: 9 LOC McCabe index: 2 number of parameters: 4 id: 3598 unit: public Number numericValue() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedIntPoint.java start line: 76 end line: 84 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3599 unit: public Number numericValue() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedFloatPoint.java start line: 65 end line: 73 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3600 unit: public IndexSearchResult searchLuceneIndexForProject() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 358 end line: 366 size: 9 LOC McCabe index: 2 number of parameters: 3 id: 3601 unit: private Object parseFlagInfo() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 222 end line: 230 size: 9 LOC McCabe index: 2 number of parameters: 4 id: 3602 unit: private void simplifyFilters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 319 end line: 328 size: 9 LOC McCabe index: 2 number of parameters: 4 id: 3603 unit: public static Set getSampleNames() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/BigVcfFeatureIndexBuilder.java start line: 163 end line: 171 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3604 unit: public static AbstractDocumentBuilder createDocumentCreator() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/AbstractDocumentBuilder.java start line: 262 end line: 270 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3605 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupDao.java start line: 123 end line: 131 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3606 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupGeneDao.java start line: 139 end line: 147 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3607 unit: static HomologGroupGene parseGroupGene() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupGeneDao.java start line: 153 end line: 161 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3608 unit: public List getItems() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 77 end line: 85 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3609 unit: public void addAnnotationFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 361 end line: 369 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3610 unit: public void removeAnnotationFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 377 end line: 385 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3611 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/SpeciesDao.java start line: 142 end line: 152 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3612 unit: private static void setAccession() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/UniprotConverter.java start line: 152 end line: 160 size: 9 LOC McCabe index: 4 number of parameters: 2 id: 3613 unit: private static void setEntryName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/UniprotConverter.java start line: 162 end line: 172 size: 9 LOC McCabe index: 4 number of parameters: 2 id: 3614 unit: public String toString() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 131 end line: 139 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3615 unit: public void downloadFileByBiologicalItemId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/dataitem/DataItemController.java start line: 154 end line: 162 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3616 unit: public void downloadProjectDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/project/ProjectController.java start line: 532 end line: 540 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3617 unit: public Result generateUrl() file: server/catgenome/src/main/java/com/epam/catgenome/controller/UtilsController.java start line: 164 end line: 172 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3618 unit: public Result fetchNCBIAggregatedVariationInfo() file: server/catgenome/src/main/java/com/epam/catgenome/controller/externaldb/ExternalDBController.java start line: 351 end line: 361 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3619 unit: public JwtRawToken issueTokenForCurrentUser() file: server/catgenome/src/main/java/com/epam/catgenome/manager/AuthManager.java start line: 98 end line: 106 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3620 unit: public MafFile unregisterMafFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafManager.java start line: 176 end line: 186 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3621 unit: public boolean add() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 99 end line: 109 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3622 unit: private void createHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 396 end line: 404 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3623 unit: private List readHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 486 end line: 494 size: 9 LOC McCabe index: 2 number of parameters: 4 id: 3624 unit: public OpenAIClient() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/OpenAIClient.java start line: 57 end line: 65 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3625 unit: public Pair loadBounds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/TrackHelper.java start line: 93 end line: 102 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3626 unit: public WigFile create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigFileManager.java start line: 82 end line: 90 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3627 unit: private void shuffleArr() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/StandardSAMRecordSifter.java start line: 135 end line: 143 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3628 unit: public List findBlatReadSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BlatSearchManager.java start line: 74 end line: 83 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3629 unit: public BamFile makeUrlBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 262 end line: 270 size: 9 LOC McCabe index: 2 number of parameters: 3 id: 3630 unit: private SamReader openSamReaderResource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 616 end line: 624 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 3631 unit: private void refreshHeadReferenceBuffer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 272 end line: 280 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3632 unit: private List computeDifferentBase() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 313 end line: 321 size: 9 LOC McCabe index: 1 number of parameters: 7 id: 3633 unit: protected List getMismatchBasePositions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 367 end line: 375 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3634 unit: private String getXSTag() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 460 end line: 468 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3635 unit: private void addToSpliceJunctionsHashMap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 494 end line: 502 size: 9 LOC McCabe index: 2 number of parameters: 3 id: 3636 unit: private BiologicalDataItemResourceType determineType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemManager.java start line: 239 end line: 247 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3637 unit: private BiologicalDataItemFile loadLocalFileItem() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemManager.java start line: 266 end line: 274 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3638 unit: private String getValidName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 130 end line: 138 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3639 unit: public GeneIndexIterator() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GeneIndexIterator.java start line: 46 end line: 54 size: 9 LOC McCabe index: 1 number of parameters: 5 id: 3640 unit: public static String findAttribute() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 359 end line: 368 size: 9 LOC McCabe index: 3 number of parameters: 2 id: 3641 unit: public GeneFeature decode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffCodec.java start line: 124 end line: 134 size: 9 LOC McCabe index: 4 number of parameters: 1 id: 3642 unit: private Activity buildActivity() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneActivityService.java start line: 112 end line: 120 size: 9 LOC McCabe index: 3 number of parameters: 4 id: 3643 unit: public Set getDescendents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 129 end line: 137 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3644 unit: void writeKeyValuePair() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 91 end line: 99 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3645 unit: static String extractSingleAttribute() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Codec.java start line: 33 end line: 42 size: 9 LOC McCabe index: 4 number of parameters: 1 id: 3646 unit: private void processHeader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsLineProcessor.java start line: 118 end line: 126 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3647 unit: public GeneRegisterer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 142 end line: 151 size: 9 LOC McCabe index: 1 number of parameters: 5 id: 3648 unit: public GeneFile unregisterGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 432 end line: 442 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3649 unit: private void deleteProjectWithNested() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 484 end line: 492 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3650 unit: private void fillFileTypeLists() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 527 end line: 535 size: 9 LOC McCabe index: 3 number of parameters: 3 id: 3651 unit: private void attachMetadataToProjects() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 562 end line: 570 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3652 unit: private void checkReference() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 675 end line: 683 size: 9 LOC McCabe index: 3 number of parameters: 2 id: 3653 unit: private Reference findReference() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 685 end line: 693 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3654 unit: private Reference findReferenceFromBioItems() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 695 end line: 703 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3655 unit: private static VariationType determineInDel() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 600 end line: 610 size: 9 LOC McCabe index: 5 number of parameters: 2 id: 3656 unit: private void createVariationsFromGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 119 end line: 127 size: 9 LOC McCabe index: 3 number of parameters: 5 id: 3657 unit: public Bucket create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bucket/BucketManager.java start line: 61 end line: 70 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3658 unit: public LineageTree loadLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeManager.java start line: 120 end line: 128 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3659 unit: private void writeGene() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genepred/GenePredManager.java start line: 109 end line: 118 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3660 unit: public IndexSearchResult filterVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 263 end line: 271 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3661 unit: public int getTotalPagesCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 273 end line: 282 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3662 unit: public List groupVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 307 end line: 315 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 3663 unit: public GeneHighLevel updateGeneFeatureByUid() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 379 end line: 387 size: 9 LOC McCabe index: 2 number of parameters: 3 id: 3664 unit: public IndexSearchResult searchFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 543 end line: 551 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3665 unit: public VcfFilterInfo loadVcfFilterInfoForProject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 561 end line: 570 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3666 unit: private List getFeatureFiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 772 end line: 780 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3667 unit: public void setGeneSpeciesNames() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 414 end line: 422 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3668 unit: public static void fillDomain() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ExtenalDBUtils.java start line: 87 end line: 95 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3669 unit: public static void fillPBP() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ExtenalDBUtils.java start line: 104 end line: 112 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3670 unit: public PatentsManager() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/PatentsManager.java start line: 96 end line: 104 size: 9 LOC McCabe index: 1 number of parameters: 4 id: 3671 unit: private List getResultList() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIShortVarManager.java start line: 225 end line: 238 size: 9 LOC McCabe index: 4 number of parameters: 1 id: 3672 unit: public List searchByEnsemblIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIEnsemblIdsManager.java start line: 71 end line: 79 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3673 unit: public NCBIStructVarVO fetchVariationById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIStructVarManager.java start line: 60 end line: 68 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3674 unit: public List searchDbForIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIAuxiliaryManager.java start line: 151 end line: 159 size: 9 LOC McCabe index: 2 number of parameters: 4 id: 3675 unit: public String fetchWithHistory() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIAuxiliaryManager.java start line: 236 end line: 244 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 3676 unit: public String fetchWithHistory() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 307 end line: 316 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 3677 unit: public String fetchData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/HttpDataManager.java start line: 87 end line: 99 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3678 unit: private QueryParameters buildSearchQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homolog/HomologManager.java start line: 277 end line: 285 size: 9 LOC McCabe index: 5 number of parameters: 1 id: 3679 unit: public SearchResult getStructures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbEntriesManager.java start line: 70 end line: 78 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3680 unit: public List getAllStructures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbEntriesManager.java start line: 81 end line: 89 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3681 unit: public Dataset fetchRCSBEntry() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbDataManager.java start line: 78 end line: 86 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3682 unit: public Dasalignment fetchPdbMapEntry() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbDataManager.java start line: 93 end line: 102 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3683 unit: public void deleteTask() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 125 end line: 133 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3684 unit: public BlastTask loadTask() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 162 end line: 170 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3685 unit: public BlastRequestInfo getTaskStatus() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastRequestManager.java start line: 85 end line: 93 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3686 unit: public Result cancelTask() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastRequestManager.java start line: 95 end line: 103 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3687 unit: public BlastRequestResult getResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastRequestManager.java start line: 105 end line: 113 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3688 unit: public ResponseBody getRawResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastRequestManager.java start line: 115 end line: 123 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3689 unit: private void writeLucenePathwayIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 306 end line: 314 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 3690 unit: public SegFile unregisterSegFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegManager.java start line: 166 end line: 176 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3691 unit: public SimpleFSDirectory createIndexForFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 964 end line: 975 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3692 unit: public boolean indexForFeatureFileExists() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1017 end line: 1028 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3693 unit: private File tryGetHelperGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1279 end line: 1289 size: 9 LOC McCabe index: 2 number of parameters: 4 id: 3694 unit: private void addFsFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2086 end line: 2095 size: 9 LOC McCabe index: 3 number of parameters: 2 id: 3695 unit: private Tree readTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 253 end line: 261 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3696 unit: private void setGeneAttributes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/ExportManager.java start line: 142 end line: 150 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3697 unit: private void setVcfAttributes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/ExportManager.java start line: 152 end line: 160 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3698 unit: public MetadataVO delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/metadata/MetadataManager.java start line: 90 end line: 98 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3699 unit: public List fillSequenceOfGCFromFasta() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 360 end line: 368 size: 9 LOC McCabe index: 1 number of parameters: 4 id: 3700 unit: private CytobandReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandReader.java start line: 98 end line: 106 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3701 unit: private GiemsaStain getGiemsaStain() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandReader.java start line: 213 end line: 223 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3702 unit: private ReferenceSet getReferenceSet() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 320 end line: 330 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3703 unit: private ReferenceGA4GH getReference() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 340 end line: 351 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3704 unit: public Reference unregisterGenome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 361 end line: 370 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3705 unit: public Reference loadReferenceGenomeByBioItemId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 220 end line: 229 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3706 unit: private Reference loadReferenceWithChromosomes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 523 end line: 531 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3707 unit: private List getChromosomeFilter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 655 end line: 663 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3708 unit: public Bookmark load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/BookmarkManager.java start line: 103 end line: 114 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3709 unit: private SSLContext buildSSLContext() file: server/catgenome/src/main/java/com/epam/catgenome/client/cloud/pipeline/CloudPipelineApiBuilder.java start line: 100 end line: 108 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3710 unit: private SSLContext buildSSLContext() file: server/catgenome/src/main/java/com/epam/catgenome/client/blast/BlastApiBuilder.java start line: 100 end line: 108 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3711 unit: constructor() file: client/client/dataServices/data-service.js start line: 67 end line: 75 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3712 unit: getFiles() file: client/client/dataServices/utils/utils-data-service.js start line: 13 end line: 21 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3713 unit: getFilesAllowed() file: client/client/dataServices/utils/utils-data-service.js start line: 23 end line: 31 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3714 unit: getDefaultTrackSettings() file: client/client/dataServices/utils/utils-data-service.js start line: 33 end line: 41 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3715 unit: function _prepareCondition() file: client/client/dataServices/utils/highlight-condition-service.js start line: 61 end line: 69 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3716 unit: deleteObjectPermissions() file: client/client/dataServices/permissions/permissions-data-service.js start line: 21 end line: 29 size: 9 LOC McCabe index: 2 number of parameters: 4 id: 3717 unit: grantOwner() file: client/client/dataServices/permissions/permissions-data-service.js start line: 48 end line: 56 size: 9 LOC McCabe index: 2 number of parameters: 3 id: 3718 unit: getBookmarks() file: client/client/dataServices/local/local-data-service.js start line: 15 end line: 23 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3719 unit: deleteBookmark() file: client/client/dataServices/local/local-data-service.js start line: 50 end line: 58 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3720 unit: getCoordsUrl() file: client/client/dataServices/project/project-data-service.js start line: 301 end line: 309 size: 9 LOC McCabe index: 8 number of parameters: 2 id: 3721 unit: getGeneFeatureTypes() file: client/client/dataServices/genome/genome-data-service.js start line: 156 end line: 164 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 3722 unit: _apiResponse() file: client/client/app/app.controller.js start line: 206 end line: 214 size: 9 LOC McCabe index: 3 number of parameters: 2 id: 3723 unit: get routeInfo() file: client/client/app/shared/heatmapContext/index.js start line: 111 end line: 119 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3724 unit: newPos: getCurrentPos() file: client/client/app/shared/dnd/index.js start line: 48 end line: 58 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3725 unit: _emitEventGeneral() file: client/client/app/shared/dispatcher/dispatcher.js start line: 41 end line: 52 size: 9 LOC McCabe index: 4 number of parameters: 2 id: 3726 unit: init() file: client/client/app/shared/eventHotkeys/index.js start line: 24 end line: 32 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3727 unit: _mapUserRoles() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 67 end line: 75 size: 9 LOC McCabe index: 4 number of parameters: 1 id: 3728 unit: _mapUsers() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 77 end line: 85 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3729 unit: openDlg() file: client/client/app/shared/components/ngbMainToolbar/ngbBookmark/ngbBookmark.controller.js start line: 17 end line: 25 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3730 unit: check() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 221 end line: 229 size: 9 LOC McCabe index: 4 number of parameters: 0 id: 3731 unit: get trackNeedsIndexFile() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromUrl/ngbOpenFileFromUrl.controller.js start line: 49 end line: 58 size: 9 LOC McCabe index: 6 number of parameters: 0 id: 3732 unit: _validate() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 137 end line: 146 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3733 unit: makeConsistent() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.controller.js start line: 90 end line: 98 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3734 unit: constructor() file: client/client/app/shared/components/ngbFloatingPanel/controller.js start line: 11 end line: 19 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3735 unit: selectModel() file: client/client/app/shared/components/ngbLLM/ngbLLM.controller.js start line: 74 end line: 82 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3736 unit: export function propagateToChildren() file: client/client/app/shared/components/ngbGoldenLayout/internal/goldenLayout.js start line: 126 end line: 137 size: 9 LOC McCabe index: 4 number of parameters: 1 id: 3737 unit: getItemAtIndex() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.search.results.js start line: 21 end line: 29 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3738 unit: getScopeObject() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantDetails.controller.js start line: 20 end line: 28 size: 9 LOC McCabe index: 3 number of parameters: 2 id: 3739 unit: getRefSequence() file: client/client/app/shared/bisulfiteModeContext/index.js start line: 152 end line: 160 size: 9 LOC McCabe index: 5 number of parameters: 3 id: 3740 unit: get tracksState() file: client/client/app/shared/projectContext/index.js start line: 450 end line: 458 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3741 unit: initEvents() file: client/client/app/shared/projectContext/index.js start line: 762 end line: 770 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3742 unit: _changePosition() file: client/client/app/shared/projectContext/index.js start line: 2012 end line: 2020 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3743 unit: getActiveTracks() file: client/client/app/shared/projectContext/index.js start line: 2062 end line: 2107 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3744 unit: _trackNeedsIndexFile() file: client/client/app/shared/services/api.service.js start line: 361 end line: 370 size: 9 LOC McCabe index: 6 number of parameters: 1 id: 3745 unit: _toggle() file: client/client/app/shared/services/api.service.js start line: 591 end line: 600 size: 9 LOC McCabe index: 4 number of parameters: 3 id: 3746 unit: setHeatmap() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbProjectSummary/ngbProjectSummary.controller.js start line: 150 end line: 158 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3747 unit: set model() file: client/client/app/components/ngbTargetPanel/ngbTargetLLM.service.js start line: 29 end line: 37 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3748 unit: title: titlesByGeneId() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 167 end line: 176 size: 9 LOC McCabe index: 5 number of parameters: 1 id: 3749 unit: async filterChanged() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 263 end line: 271 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3750 unit: async diseaseChanged() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 273 end line: 281 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3751 unit: resetSorting() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 288 end line: 296 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3752 unit: setFilter() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 121 end line: 129 size: 9 LOC McCabe index: 4 number of parameters: 2 id: 3753 unit: itemIsSelected() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 104 end line: 112 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3754 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterInput/ngbDiseasesTargetsFilterInput.controller.js start line: 5 end line: 14 size: 9 LOC McCabe index: 2 number of parameters: 3 id: 3755 unit: setFilter() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 111 end line: 119 size: 9 LOC McCabe index: 4 number of parameters: 2 id: 3756 unit: async filterChanged() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 283 end line: 291 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3757 unit: resetSorting() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 305 end line: 313 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3758 unit: resetData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 164 end line: 172 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3759 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPagination/ngbBibliographyPagination.controller.js start line: 10 end line: 19 size: 9 LOC McCabe index: 1 number of parameters: 4 id: 3760 unit: async setPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPagination/ngbBibliographyPagination.controller.js start line: 34 end line: 42 size: 9 LOC McCabe index: 4 number of parameters: 1 id: 3761 unit: itemIsSelected() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 94 end line: 102 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3762 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTablePagination/ngbDiseasesTablePagination.controller.js start line: 10 end line: 19 size: 9 LOC McCabe index: 1 number of parameters: 4 id: 3763 unit: resetSorting() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 200 end line: 208 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3764 unit: async filterChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 312 end line: 320 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3765 unit: get columnsList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 78 end line: 86 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3766 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTablePagination/ngbStructureTablePagination.controller.js start line: 10 end line: 19 size: 9 LOC McCabe index: 1 number of parameters: 4 id: 3767 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTableFilter/ngbStructureTableFilter.controller.js start line: 10 end line: 19 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 3768 unit: resetSorting() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 322 end line: 330 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3769 unit: async filterChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 206 end line: 214 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3770 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTablePagination/ngbGenomicsTablePagination.controller.js start line: 10 end line: 19 size: 9 LOC McCabe index: 1 number of parameters: 4 id: 3771 unit: async filterChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 179 end line: 187 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3772 unit: get defaultFilter() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 75 end line: 83 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3773 unit: async getGenomicsData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 325 end line: 333 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3774 unit: setFilter() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 394 end line: 402 size: 9 LOC McCabe index: 4 number of parameters: 2 id: 3775 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsAlignment/ngbGenomicsAlignment.controller.js start line: 24 end line: 33 size: 9 LOC McCabe index: 1 number of parameters: 6 id: 3776 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 171 end line: 179 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3777 unit: navigateToReference() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 281 end line: 289 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3778 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTablePagination/ngbSequencesTablePagination.controller.js start line: 10 end line: 19 size: 9 LOC McCabe index: 1 number of parameters: 5 id: 3779 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequenceTableContextMenu/ngbSequenceTableContextMenu.controller.js start line: 27 end line: 35 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 3780 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbChemicalTablePagination/ngbChemicalTablePagination.controller.js start line: 10 end line: 19 size: 9 LOC McCabe index: 1 number of parameters: 4 id: 3781 unit: resetSorting() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 205 end line: 213 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3782 unit: async onClickSearch() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 165 end line: 173 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3783 unit: get headerDetails() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 33 end line: 41 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3784 unit: getColumnList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 544 end line: 552 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3785 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbProteinTablePagination/ngbProteinTablePagination.controller.js start line: 10 end line: 19 size: 9 LOC McCabe index: 1 number of parameters: 4 id: 3786 unit: resetSorting() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 221 end line: 229 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3787 unit: resetSorting() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 144 end line: 152 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3788 unit: async filterChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 278 end line: 286 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3789 unit: itemIsSelected() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 101 end line: 109 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3790 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTablePagination/ngbDrugsTablePagination.controller.js start line: 10 end line: 19 size: 9 LOC McCabe index: 1 number of parameters: 4 id: 3791 unit: setFilter() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 300 end line: 308 size: 9 LOC McCabe index: 4 number of parameters: 2 id: 3792 unit: getItemName() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetAddUserRoleDlg.controller.js start line: 57 end line: 65 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3793 unit: save() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetAddUserRoleDlg.controller.js start line: 104 end line: 112 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3794 unit: getUsers() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.service.js start line: 44 end line: 52 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3795 unit: rowTemplate: require() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 146 end line: 154 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3796 unit: async openTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 309 end line: 317 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3797 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterInput/ngbTargetsFilterInput.controller.js start line: 14 end line: 23 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 3798 unit: itemIsSelected() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 96 end line: 104 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3799 unit: function filterGroupHead() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetLaunchDialog/ngbTargetLaunchDialog.run.js start line: 78 end line: 86 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3800 unit: importFile() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 568 end line: 576 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3801 unit: async saveTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 134 end line: 142 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3802 unit: itemIsSelected() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 112 end line: 120 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3803 unit: onClickRemove() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 464 end line: 472 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3804 unit: resetSorting() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 690 end line: 698 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3805 unit: setColumnsList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsFormActions/ngbTargetsFormActions.controller.js start line: 28 end line: 36 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3806 unit: async onChangeShowFilters() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsFormActions/ngbTargetsFormActions.controller.js start line: 45 end line: 53 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3807 unit: bioDataItemId: getName() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 354 end line: 362 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3808 unit: itemIsSelected() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbMotifsResultsFilterList.controller.js start line: 156 end line: 164 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3809 unit: async searchMotif() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 184 end line: 192 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3810 unit: onResize() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResultTable/ngbOrthoParaResultTable.controller.js start line: 183 end line: 191 size: 9 LOC McCabe index: 2 number of parameters: 3 id: 3811 unit: onResize() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResultTable/ngbHomologeneResultTable.controller.js start line: 181 end line: 189 size: 9 LOC McCabe index: 2 number of parameters: 3 id: 3812 unit: template: require() file: client/client/app/components/ngbSashimiPlot/ngbSashimiPlot.run.js start line: 7 end line: 15 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3813 unit: onResize() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.controller.js start line: 185 end line: 193 size: 9 LOC McCabe index: 2 number of parameters: 3 id: 3814 unit: get existedKeys() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 72 end line: 80 size: 9 LOC McCabe index: 4 number of parameters: 0 id: 3815 unit: addFormItem() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 110 end line: 118 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3816 unit: function _preprocessMetadataAttributes() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 33 end line: 41 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3817 unit: export function updateTracksStateFn() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 228 end line: 236 size: 9 LOC McCabe index: 5 number of parameters: 2 id: 3818 unit: export function mapTrackFn() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 247 end line: 255 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3819 unit: export function expandNode() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 312 end line: 320 size: 9 LOC McCabe index: 5 number of parameters: 1 id: 3820 unit: getItemName() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbAddUserRoleDlg.controller.js start line: 64 end line: 72 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3821 unit: toggle() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 213 end line: 222 size: 9 LOC McCabe index: 4 number of parameters: 1 id: 3822 unit: const mapTrackFn = function() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 378 end line: 386 size: 9 LOC McCabe index: 4 number of parameters: 1 id: 3823 unit: openDlg() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableDownload/ngbGenesTableDownload.controller.js start line: 13 end line: 22 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3824 unit: getStyle() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 591 end line: 599 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3825 unit: async loadGenesWithProgress() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 131 end line: 139 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3826 unit: changeDisplaySettings() file: client/client/app/components/ngbMolecularViewer/ngbMolecularViewer.controller.js start line: 157 end line: 165 size: 9 LOC McCabe index: 3 number of parameters: 2 id: 3827 unit: get reference() file: client/client/app/components/ngbGenomeAnnotations/ngbGenomeAnnotations.controller.js start line: 43 end line: 51 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3828 unit: openDlg() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableDownload/ngbVariantsTableDownload.controller.js start line: 13 end line: 22 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3829 unit: itemIsSelected() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbCoverageFilterList.controller.js start line: 95 end line: 103 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3830 unit: async getDataDown() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 163 end line: 171 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3831 unit: async getDataUp() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 173 end line: 181 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3832 unit: export default function() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/customMaxLength.directive.js start line: 1 end line: 25 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3833 unit: export default function() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearch.percentage.filter.js start line: 1 end line: 9 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 3834 unit: clearHistory() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.controller.js start line: 44 end line: 52 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3835 unit: navigateToTracks() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.controller.js start line: 48 end line: 56 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3836 unit: linkEnabled() file: client/client/app/components/ngbTracksView/ngbTrackActions/ngbTrackActions.controller.js start line: 17 end line: 25 size: 9 LOC McCabe index: 4 number of parameters: 1 id: 3837 unit: preprocessColors() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbWigColorPreference/ngbWigColorPreference.controller.js start line: 45 end line: 53 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3838 unit: postprocessColors() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbWigColorPreference/ngbWigColorPreference.controller.js start line: 55 end line: 63 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3839 unit: constructor() file: client/client/app/components/ngbTracksView/ngbTracksSelectionMenu/ngbTracksSelectionMenu.controller.js start line: 17 end line: 25 size: 9 LOC McCabe index: 1 number of parameters: 4 id: 3840 unit: set vcfFileInfoItem() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 152 end line: 160 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3841 unit: function findMaxId() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.service.js start line: 18 end line: 26 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3842 unit: searchPathway() file: client/client/app/components/ngbPathways/ngbPathwaysPanel.controller.js start line: 62 end line: 70 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3843 unit: toggleAnnotationsPanel() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.controller.js start line: 80 end line: 88 size: 9 LOC McCabe index: 4 number of parameters: 0 id: 3844 unit: refreshAnnotationList() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.controller.js start line: 137 end line: 145 size: 9 LOC McCabe index: 4 number of parameters: 0 id: 3845 unit: set currentInternalPathway() file: client/client/app/components/ngbPathways/ngbPathways.service.js start line: 51 end line: 59 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3846 unit: onMouseEnter() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbPathwayAnnotationMark/ngbPathwayAnnotationMark.controller.js start line: 91 end line: 99 size: 9 LOC McCabe index: 4 number of parameters: 1 id: 3847 unit: highlightLineage() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.controller.js start line: 164 end line: 172 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3848 unit: getHighlight() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.controller.js start line: 174 end line: 182 size: 9 LOC McCabe index: 3 number of parameters: 2 id: 3849 unit: getHighlightProfileConditions() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.controller.js start line: 184 end line: 192 size: 9 LOC McCabe index: 3 number of parameters: 2 id: 3850 unit: navigateToDataset() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.controller.js start line: 213 end line: 221 size: 9 LOC McCabe index: 6 number of parameters: 2 id: 3851 unit: isDuplicate() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 103 end line: 111 size: 9 LOC McCabe index: 5 number of parameters: 1 id: 3852 unit: function refreshRender() file: client/client/modules/render/core/track/track.js start line: 27 end line: 35 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3853 unit: set isResizing() file: client/client/modules/render/core/track/track.js start line: 403 end line: 411 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3854 unit: show() file: client/client/modules/render/core/track/tooltip.js start line: 112 end line: 129 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3855 unit: const showDelayed = function() file: client/client/modules/render/core/track/tooltip.js start line: 118 end line: 126 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3856 unit: onScroll() file: client/client/modules/render/core/track/cachedTrack/cachedTrackWithVerticalScroll.js start line: 41 end line: 49 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3857 unit: enable() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 81 end line: 89 size: 9 LOC McCabe index: 6 number of parameters: 1 id: 3858 unit: checkCoverage() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 147 end line: 155 size: 9 LOC McCabe index: 4 number of parameters: 2 id: 3859 unit: async _transformViewportRebuild() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 390 end line: 398 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3860 unit: constructor() file: client/client/modules/render/core/info/tableRowInfo.js start line: 2 end line: 10 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3861 unit: function wrapIndeterminateStateFn() file: client/client/modules/render/core/menu/buildMenu.js start line: 17 end line: 25 size: 9 LOC McCabe index: 1 number of parameters: 2 id: 3862 unit: preprocessChromosomes() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 307 end line: 315 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3863 unit: convertDrawingCoordinateToScrollCoordinate() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 700 end line: 708 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3864 unit: convertScrollCoordinateToDrawingCoordinate() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 716 end line: 724 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3865 unit: negative: combineColors() file: client/client/modules/render/tracks/wig/menu/coverageColorPerform.js start line: 21 end line: 30 size: 9 LOC McCabe index: 3 number of parameters: 2 id: 3866 unit: _initReadColorModeInsertSizeAndPairOrientation() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 139 end line: 147 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3867 unit: _setScrollBarHoverStatus() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 316 end line: 324 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3868 unit: _getZoomInPlaceholderText() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 408 end line: 416 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3869 unit: checkFeature() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 636 end line: 644 size: 9 LOC McCabe index: 5 number of parameters: 2 id: 3870 unit: insertSizeAndPairOrientation: getInsertSizePairOrientationType() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 284 end line: 294 size: 9 LOC McCabe index: 3 number of parameters: 2 id: 3871 unit: function showCoverageStatistics() file: client/client/modules/render/tracks/bam/menu/coverageMenu.js start line: 31 end line: 39 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3872 unit: updateTextureCoordinates() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/featureBaseRenderer.js start line: 52 end line: 60 size: 9 LOC McCabe index: 5 number of parameters: 1 id: 3873 unit: static hashCode() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/geneFeatureRenderer.js start line: 96 end line: 104 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3874 unit: static shouldReplaceFeature() file: client/client/modules/render/tracks/gene/internal/data/geneTransformer.js start line: 304 end line: 314 size: 9 LOC McCabe index: 5 number of parameters: 2 id: 3875 unit: function getLink() file: client/client/modules/render/tracks/common/menu/downloadFile.js start line: 1 end line: 9 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3876 unit: function preStateMutatorFn() file: client/client/modules/render/tracks/common/scaleModes/menuHelpers.js start line: 3 end line: 11 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3877 unit: function generateTracksCoverageExtremumFn() file: client/client/modules/render/tracks/common/scaleModes/menuHelpers.js start line: 70 end line: 78 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3878 unit: function generateCorrectXFn() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/index.js start line: 7 end line: 15 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3879 unit: hover() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 500 end line: 508 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3880 unit: addHighlight() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 215 end line: 223 size: 9 LOC McCabe index: 4 number of parameters: 2 id: 3881 unit: onScroll() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 285 end line: 293 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3882 unit: animate() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 822 end line: 830 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3883 unit: static _canPutLabel() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 200 end line: 208 size: 9 LOC McCabe index: 4 number of parameters: 3 id: 3884 unit: export default function getRulerHeight() file: client/client/modules/render/tracks/ruler/rulerHeightManager.js start line: 4 end line: 12 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3885 unit: static hashCode() file: client/client/modules/render/tracks/featureCounts/internal/renderer/features/drawing/fcFeatureRenderer.js start line: 83 end line: 91 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3886 unit: static getTooltipDataObject() file: client/client/modules/render/tracks/seg/index.js start line: 120 end line: 128 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3887 unit: function perform() file: client/client/modules/render/tracks/heatmap/menu/colorSchemeMenu.js start line: 4 end line: 12 size: 9 LOC McCabe index: 6 number of parameters: 1 id: 3888 unit: const mapNucleotideItemsFn = function() file: client/client/modules/render/tracks/reference/referenceTransformer.js start line: 23 end line: 31 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3889 unit: const mapGCContentItemsFn = function() file: client/client/modules/render/tracks/reference/referenceTransformer.js start line: 50 end line: 58 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3890 unit: static checkRectConflicts() file: client/client/modules/render/utilities/zonesManager.js start line: 170 end line: 178 size: 9 LOC McCabe index: 3 number of parameters: 2 id: 3891 unit: static darkenColor() file: client/client/modules/render/utilities/colorProcessor.js start line: 5 end line: 13 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3892 unit: static lightenColor() file: client/client/modules/render/utilities/colorProcessor.js start line: 15 end line: 23 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 3893 unit: function getRangeTestFn() file: client/client/modules/render/utilities/linearDimensionsConflicts.js start line: 52 end line: 60 size: 9 LOC McCabe index: 4 number of parameters: 3 id: 3894 unit: showTooltip() file: client/client/modules/render/heatmap/interactions/index.js start line: 124 end line: 132 size: 9 LOC McCabe index: 5 number of parameters: 2 id: 3895 unit: test() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 281 end line: 292 size: 9 LOC McCabe index: 5 number of parameters: 1 id: 3896 unit: onDrag() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 159 end line: 167 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3897 unit: initialize() file: client/client/modules/render/heatmap/renderer/viewport-renderer/index.js start line: 139 end line: 147 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3898 unit: set hovered() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/axis-label.js start line: 307 end line: 315 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3899 unit: onDrag() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 369 end line: 377 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3900 unit: getViewportBounds() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 414 end line: 422 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3901 unit: get valid() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 175 end line: 183 size: 9 LOC McCabe index: 6 number of parameters: 0 id: 3902 unit: test() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 185 end line: 193 size: 9 LOC McCabe index: 7 number of parameters: 1 id: 3903 unit: startHover() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 26 end line: 34 size: 9 LOC McCabe index: 1 number of parameters: 0 id: 3904 unit: export default function getDataItemTooltipContent() file: client/client/modules/render/heatmap/renderer/data-renderer/utilities/get-data-item-tooltip-content.js start line: 5 end line: 13 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3905 unit: export function updateSessionFlags() file: client/client/modules/render/heatmap/renderer/data-renderer/utilities/viewport-session-flags.js start line: 14 end line: 22 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3906 unit: appendGraphics() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/canvas-graphics.js start line: 88 end line: 96 size: 9 LOC McCabe index: 5 number of parameters: 2 id: 3907 unit: HeatmapGraphicsBase.createInstance = function() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/index.js start line: 9 end line: 17 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3908 unit: set alpha() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry-collection.js start line: 26 end line: 34 size: 9 LOC McCabe index: 4 number of parameters: 1 id: 3909 unit: append() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry-collection.js start line: 75 end line: 83 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3910 unit: getCanvasPoint() file: client/client/modules/render/heatmap/viewport/index.js start line: 185 end line: 193 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3911 unit: startAnimation() file: client/client/modules/render/heatmap/animation/animated.js start line: 26 end line: 34 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3912 unit: animate() file: client/client/modules/render/heatmap/animation/animation-set.js start line: 37 end line: 45 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3913 unit: set columnsRowsReordered() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 229 end line: 237 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3914 unit: getPlainData() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 153 end line: 161 size: 9 LOC McCabe index: 4 number of parameters: 0 id: 3915 unit: get() file: client/client/modules/render/heatmap/utilities/trie.js start line: 35 end line: 43 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3916 unit: addEventListener() file: client/client/modules/render/heatmap/utilities/heatmap-event-dispatcher.js start line: 6 end line: 14 size: 9 LOC McCabe index: 4 number of parameters: 2 id: 3917 unit: export function writeHeatmapState() file: client/client/modules/render/heatmap/heatmap-view-options/manager.js start line: 20 end line: 28 size: 9 LOC McCabe index: 4 number of parameters: 2 id: 3918 unit: renderColorScheme() file: client/client/modules/render/heatmap/heatmap-view.js start line: 536 end line: 544 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3919 unit: check() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 28 end line: 36 size: 9 LOC McCabe index: 5 number of parameters: 2 id: 3920 unit: static fromColorConfiguration() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 53 end line: 61 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 3921 unit: getAnyColor() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 226 end line: 234 size: 9 LOC McCabe index: 4 number of parameters: 0 id: 3922 unit: constructor() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 289 end line: 297 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 3923 unit: colorSchemeAvailable() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 342 end line: 350 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3924 unit: export function interpolateColors() file: client/client/modules/render/heatmap/color-scheme/helpers.js start line: 69 end line: 77 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 3925 unit: export function formatColor() file: client/client/modules/render/heatmap/color-scheme/helpers.js start line: 85 end line: 93 size: 9 LOC McCabe index: 6 number of parameters: 2 id: 3926 unit: static drawDashLine() file: client/client/modules/render/variant-render/renderers/drawing/utilities/dash-lines.js start line: 9 end line: 17 size: 9 LOC McCabe index: 3 number of parameters: 3 id: 3927 unit: renderObjects() file: client/client/modules/render/variant-render/renderers/base-renderer.js start line: 55 end line: 63 size: 9 LOC McCabe index: 9 number of parameters: 2 id: 3928 unit: reRenderScene() file: client/client/modules/render/variant-render/variant-renderer.js start line: 180 end line: 188 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3929 unit: destroy() file: client/client/modules/render/variant-render/variant-renderer.js start line: 202 end line: 210 size: 9 LOC McCabe index: 3 number of parameters: 0 id: 3930 unit: export function getSimpleValue() file: export-templates/target-identification/src/model/utilities.ts start line: 23 end line: 31 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3931 unit: export function asArray() file: export-templates/target-identification/src/model/utilities.ts start line: 33 end line: 41 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3932 unit: function getFilterValueFn() file: export-templates/target-identification/src/model/filtered-data.ts start line: 68 end line: 76 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 3933 unit: private void calculateFieldWidth() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 189 end line: 196 size: 8 LOC McCabe index: 3 number of parameters: 3 id: 3934 unit: public String getFormatString() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BlastDatabase.java start line: 59 end line: 66 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3935 unit: private void calculateFieldWidth() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BlastDatabase.java start line: 94 end line: 101 size: 8 LOC McCabe index: 3 number of parameters: 3 id: 3936 unit: private static void calculateFieldWidth() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionsContainer.java start line: 85 end line: 92 size: 8 LOC McCabe index: 3 number of parameters: 3 id: 3937 unit: public String getFormatString() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/lineage/LineageTree.java start line: 61 end line: 68 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3938 unit: private void calculateFieldWidth() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/lineage/LineageTree.java start line: 106 end line: 113 size: 8 LOC McCabe index: 3 number of parameters: 3 id: 3939 unit: public String getFormatString() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/SpeciesEntity.java start line: 67 end line: 74 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3940 unit: private void getItemFormat() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/SpeciesEntity.java start line: 92 end line: 99 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 3941 unit: private void calculateFieldWidth() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/SpeciesEntity.java start line: 105 end line: 112 size: 8 LOC McCabe index: 3 number of parameters: 3 id: 3942 unit: public String getFormatString() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/NgbUser.java start line: 63 end line: 70 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3943 unit: private void calculateFieldWidth() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/NgbUser.java start line: 79 end line: 86 size: 8 LOC McCabe index: 3 number of parameters: 3 id: 3944 unit: public String getFormatString() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/pathway/NGBPathway.java start line: 60 end line: 67 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3945 unit: private void calculateFieldWidth() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/pathway/NGBPathway.java start line: 105 end line: 112 size: 8 LOC McCabe index: 3 number of parameters: 3 id: 3946 unit: public static PathwayDatabaseSource getById() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/pathway/PathwayDatabaseSource.java start line: 43 end line: 50 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 3947 unit: public static PathwayDatabaseSource getByExtension() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/pathway/PathwayDatabaseSource.java start line: 52 end line: 59 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 3948 unit: private void calculateFieldWidth() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 200 end line: 207 size: 8 LOC McCabe index: 3 number of parameters: 3 id: 3949 unit: public String getFormatString() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Role.java start line: 68 end line: 75 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3950 unit: private void getItemFormat() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Role.java start line: 77 end line: 84 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 3951 unit: private void calculateFieldWidth() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Role.java start line: 86 end line: 93 size: 8 LOC McCabe index: 3 number of parameters: 3 id: 3952 unit: public String getFormatString() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/heatmap/Heatmap.java start line: 64 end line: 71 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3953 unit: private void calculateFieldWidth() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/heatmap/Heatmap.java start line: 112 end line: 119 size: 8 LOC McCabe index: 3 number of parameters: 3 id: 3954 unit: public String getFormatString() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/coverage/BamCoverage.java start line: 57 end line: 64 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3955 unit: public String formatItem() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/coverage/BamCoverage.java start line: 72 end line: 79 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 3956 unit: private void getItemFormat() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/coverage/BamCoverage.java start line: 87 end line: 94 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 3957 unit: private void calculateFieldWidth() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/coverage/BamCoverage.java start line: 96 end line: 103 size: 8 LOC McCabe index: 3 number of parameters: 3 id: 3958 unit: public String getFormatString() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/pdb/PdbFile.java start line: 60 end line: 67 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3959 unit: private void calculateFieldWidth() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/pdb/PdbFile.java start line: 103 end line: 110 size: 8 LOC McCabe index: 3 number of parameters: 3 id: 3960 unit: public static String executeRequest() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/request/RequestManager.java start line: 51 end line: 58 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3961 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/FileIndexingHandler.java start line: 63 end line: 70 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 3962 unit: private void printWithPermissions() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/SearchHandler.java start line: 93 end line: 101 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 3963 unit: private void printWithPermissions() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/dataset/DatasetListHandler.java start line: 152 end line: 160 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 3964 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/dataset/DatasetDescriptionDeletionHandler.java start line: 56 end line: 63 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 3965 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/dataset/DatasetDeletionHandler.java start line: 70 end line: 77 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 3966 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/species/SpeciesRegistrationHandler.java start line: 88 end line: 95 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 3967 unit: protected void addAnnotationType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/heatmap/HeatmapLabelAnnotationHandler.java start line: 45 end line: 52 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 3968 unit: private static AclClass getAclClass() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/PrintPermissionsHelper.java start line: 91 end line: 98 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 3969 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/coverage/CoverageDeletionHandler.java start line: 67 end line: 74 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 3970 unit: protected Long parseProjectId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 355 end line: 362 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3971 unit: protected String getPostResult() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 440 end line: 447 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 3972 unit: public boolean isCurrentUserIsAdmin() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 863 end line: 870 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 3973 unit: private T loadSilentlyOrWarn() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/GrantPermissionHandler.java start line: 227 end line: 234 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3974 unit: private JsonMapper() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/JsonMapper.java start line: 49 end line: 69 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 3975 unit: public CustomRequestLoggingFilter requestLoggingFilter() file: server/catgenome/src/main/java/com/epam/catgenome/app/Application.java start line: 127 end line: 134 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 3976 unit: public SAMLProcessingFilter samlWebSSOProcessingFilter() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 452 end line: 459 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 3977 unit: public Feature next() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureIterator.java start line: 159 end line: 166 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 3978 unit: public static Stream search() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/MotifSearcher.java start line: 47 end line: 54 size: 8 LOC McCabe index: 1 number of parameters: 7 id: 3979 unit: public static String convertIupacToComplementReversedRegex() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/IupacRegexConverter.java start line: 68 end line: 75 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3980 unit: public short readShort() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataInputStream.java start line: 130 end line: 137 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 3981 unit: public int readUnsignedShort() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataInputStream.java start line: 144 end line: 151 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 3982 unit: public char readChar() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataInputStream.java start line: 158 end line: 165 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 3983 unit: public static String prepareSortedFile() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/FeatureSorterFactory.java start line: 66 end line: 74 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 3984 unit: static boolean isEmptyLine() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/AbstractFeatureSorter.java start line: 131 end line: 138 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 3985 unit: public static boolean isGZIPFile() file: server/catgenome/src/main/java/com/epam/catgenome/util/IOHelper.java start line: 85 end line: 92 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 3986 unit: public static boolean isFileSupported() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 136 end line: 144 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 3987 unit: private String removeParentheses() file: server/catgenome/src/main/java/com/epam/catgenome/util/InfoFieldParser.java start line: 147 end line: 154 size: 8 LOC McCabe index: 4 number of parameters: 1 id: 3988 unit: public static CloseableIterator query() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 278 end line: 286 size: 8 LOC McCabe index: 2 number of parameters: 4 id: 3989 unit: public static Read createExtendedRead() file: server/catgenome/src/main/java/com/epam/catgenome/util/BamUtil.java start line: 114 end line: 122 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 3990 unit: public static boolean isBam() file: server/catgenome/src/main/java/com/epam/catgenome/util/BamUtil.java start line: 229 end line: 236 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 3991 unit: public static String reverseComplement() file: server/catgenome/src/main/java/com/epam/catgenome/util/ProteinSequenceUtils.java start line: 119 end line: 127 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3992 unit: public InputStream loadFromTo() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 158 end line: 165 size: 8 LOC McCabe index: 1 number of parameters: 3 id: 3993 unit: public static boolean hasBlockCompressedExtension() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 169 end line: 176 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 3994 unit: private static boolean isBlockCompressed() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractEnhancedFeatureReader.java start line: 155 end line: 162 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 3995 unit: public int read() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 598 end line: 608 size: 8 LOC McCabe index: 2 number of parameters: 3 id: 3996 unit: public final void writeChars() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 186 end line: 193 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3997 unit: public TabixLineReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 368 end line: 375 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3998 unit: public static String getFirstPartForIndexPath() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 492 end line: 499 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 3999 unit: public UserDetails loadUserByUsername() file: server/catgenome/src/main/java/com/epam/catgenome/security/PersonService.java start line: 57 end line: 64 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4000 unit: public UserContext() file: server/catgenome/src/main/java/com/epam/catgenome/security/UserContext.java start line: 61 end line: 68 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4001 unit: public LookupStrategyImpl() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 90 end line: 97 size: 8 LOC McCabe index: 1 number of parameters: 6 id: 4002 unit: private void setAclOnAce() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 159 end line: 166 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4003 unit: public boolean isAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 142 end line: 149 size: 8 LOC McCabe index: 2 number of parameters: 3 id: 4004 unit: public boolean isAllowedByTargetGeneIds() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 174 end line: 181 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4005 unit: private boolean hasPermissionOnWholeProject() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 285 end line: 292 size: 8 LOC McCabe index: 4 number of parameters: 2 id: 4006 unit: private void updateParent() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/aspect/AclAspect.java start line: 162 end line: 169 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4007 unit: public boolean isAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 59 end line: 66 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4008 unit: public boolean isAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 68 end line: 75 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4009 unit: public boolean hasPermissionOnSession() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 143 end line: 151 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4010 unit: public boolean readOnALineageTreeIsAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 200 end line: 207 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4011 unit: public void deleteGrantedAuthority() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 152 end line: 159 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4012 unit: public static boolean isPermissionSet() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 37 end line: 44 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4013 unit: public static boolean allPermissionsSet() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 46 end line: 53 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4014 unit: public void validate() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/LBConfig.java start line: 41 end line: 49 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4015 unit: public SampledTrack() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/SampledTrack.java start line: 55 end line: 62 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4016 unit: public static PersonRole getRoleById() file: server/catgenome/src/main/java/com/epam/catgenome/entity/person/PersonRole.java start line: 48 end line: 56 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4017 unit: public GeneLowLevel() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneLowLevel.java start line: 62 end line: 70 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4018 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/entity/blast/BlastTaskStatus.java start line: 41 end line: 48 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4019 unit: public static BlastDatabaseType getTypeById() file: server/catgenome/src/main/java/com/epam/catgenome/entity/blast/BlastDatabaseType.java start line: 48 end line: 55 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4020 unit: public static BlastDatabaseSource getSourceById() file: server/catgenome/src/main/java/com/epam/catgenome/entity/blast/BlastDatabaseSource.java start line: 44 end line: 51 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4021 unit: public static PathwayDatabaseSource getById() file: server/catgenome/src/main/java/com/epam/catgenome/entity/pathway/PathwayDatabaseSource.java start line: 50 end line: 57 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4022 unit: public static PathwayDatabaseSource getByExtension() file: server/catgenome/src/main/java/com/epam/catgenome/entity/pathway/PathwayDatabaseSource.java start line: 59 end line: 66 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4023 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/entity/heatmap/HeatmapDataType.java start line: 44 end line: 51 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4024 unit: public void createMafFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/maf/MafFileDao.java start line: 70 end line: 79 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4025 unit: public void savePerson() file: server/catgenome/src/main/java/com/epam/catgenome/dao/person/PersonDao.java start line: 62 end line: 69 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4026 unit: public Person loadPersonByNameAndPassword() file: server/catgenome/src/main/java/com/epam/catgenome/dao/person/PersonDao.java start line: 91 end line: 99 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4027 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamCoverageDao.java start line: 131 end line: 139 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4028 unit: static BamCoverage parse() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamCoverageDao.java start line: 145 end line: 152 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4029 unit: public List loadUsersByNames() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 128 end line: 136 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4030 unit: private void createNonExistingUserGroups() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 316 end line: 324 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4031 unit: private static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 212 end line: 221 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4032 unit: private static BiologicalDataItem mapWigFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 521 end line: 528 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4033 unit: private static BiologicalDataItem mapBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 531 end line: 539 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4034 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 148 end line: 155 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4035 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 781 end line: 788 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4036 unit: static ProjectNote parseNote() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 794 end line: 801 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4037 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 348 end line: 357 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4038 unit: public void saveDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastDatabaseDao.java start line: 68 end line: 75 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4039 unit: public void setFloatValues() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedSetFloatPoint.java start line: 52 end line: 59 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4040 unit: public VcfFeatureIndexBuilder() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 84 end line: 91 size: 8 LOC McCabe index: 1 number of parameters: 3 id: 4041 unit: private void makeCopies() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 388 end line: 395 size: 8 LOC McCabe index: 2 number of parameters: 4 id: 4042 unit: private String extractField() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/GeneDocumentBuilder.java start line: 173 end line: 180 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4043 unit: public Integer findDocumentIdByUid() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/AbstractDocumentBuilder.java start line: 180 end line: 187 size: 8 LOC McCabe index: 4 number of parameters: 2 id: 4044 unit: public FacetsConfig createFacetsConfig() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/AbstractDocumentBuilder.java start line: 228 end line: 236 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4045 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayDao.java start line: 129 end line: 137 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4046 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayOrganismDao.java start line: 107 end line: 115 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4047 unit: static PathwayOrganism parsePathwayOrganism() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayOrganismDao.java start line: 121 end line: 128 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4048 unit: static RowMapper getSegSampleMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 230 end line: 239 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4049 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pdb/PdbFileDao.java start line: 151 end line: 158 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4050 unit: static RowMapper getBioDataMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 654 end line: 661 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4051 unit: public Species loadSpeciesByVersion() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/SpeciesDao.java start line: 74 end line: 81 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4052 unit: public void saveBookmark() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 79 end line: 86 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4053 unit: protected File transferToTempFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/AbstractRESTController.java start line: 95 end line: 102 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4054 unit: private static void setFunction() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/UniprotConverter.java start line: 96 end line: 103 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4055 unit: private static void fillTrack() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/Query2TrackConverter.java start line: 94 end line: 101 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4056 unit: private static String regexExtract() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 121 end line: 130 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4057 unit: public Result jumpToNextGene() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/GeneController.java start line: 342 end line: 349 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4058 unit: public Result jumpToPrevGene() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/GeneController.java start line: 362 end line: 369 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4059 unit: public Result fetchEnsemblVariationData() file: server/catgenome/src/main/java/com/epam/catgenome/controller/externaldb/ExternalDBController.java start line: 184 end line: 193 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4060 unit: public Result updateLabelAnnotation() file: server/catgenome/src/main/java/com/epam/catgenome/controller/heatmap/HeatmapController.java start line: 106 end line: 113 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4061 unit: public void exportVcf() file: server/catgenome/src/main/java/com/epam/catgenome/controller/filter/FilterController.java start line: 219 end line: 226 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4062 unit: public final Result saveCytobands() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/CytobandController.java start line: 78 end line: 85 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4063 unit: public Result updateReferenceAnnotationFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 315 end line: 322 size: 8 LOC McCabe index: 1 number of parameters: 3 id: 4064 unit: public UserContext getUserContext() file: server/catgenome/src/main/java/com/epam/catgenome/manager/AuthManager.java start line: 54 end line: 61 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4065 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/MutationStatus.java start line: 43 end line: 50 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4066 unit: private void createMafBioItem() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafManager.java start line: 237 end line: 244 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4067 unit: private String modifyPath() file: server/catgenome/src/main/java/com/epam/catgenome/manager/UpdateItemPathManager.java start line: 202 end line: 209 size: 8 LOC McCabe index: 3 number of parameters: 3 id: 4068 unit: public Track loadFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 191 end line: 198 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4069 unit: public BedFile unregisterBedFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 280 end line: 289 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4070 unit: private int getGenesCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 536 end line: 543 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4071 unit: public String getGeneArticleSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/LLMService.java start line: 82 end line: 89 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4072 unit: public String getChatCompletion() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/OpenAIClient.java start line: 67 end line: 74 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4073 unit: private static void checkStartEndPosition() file: server/catgenome/src/main/java/com/epam/catgenome/manager/TrackHelper.java start line: 223 end line: 230 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4074 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphCodec.java start line: 47 end line: 54 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4075 unit: public Object readActualHeader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphCodec.java start line: 91 end line: 98 size: 8 LOC McCabe index: 7 number of parameters: 1 id: 4076 unit: public BedGraphReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphReader.java start line: 42 end line: 49 size: 8 LOC McCabe index: 1 number of parameters: 3 id: 4077 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/FacadeWigManager.java start line: 114 end line: 121 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4078 unit: protected void prepareWigFileToWork() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/FacadeWigManager.java start line: 211 end line: 218 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4079 unit: public void finish() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/ConstantMemorySAMRecordSampler.java start line: 131 end line: 138 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4080 unit: public void add() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/FullResultSifter.java start line: 59 end line: 67 size: 8 LOC McCabe index: 2 number of parameters: 6 id: 4081 unit: public BamFile create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamFileManager.java start line: 79 end line: 87 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4082 unit: public BamTrack getRegionsFromUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 207 end line: 216 size: 8 LOC McCabe index: 1 number of parameters: 3 id: 4083 unit: public BamTrack getRegionsFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 224 end line: 233 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4084 unit: public void fillEmitterByReadsFromUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 245 end line: 253 size: 8 LOC McCabe index: 1 number of parameters: 5 id: 4085 unit: private SamInputResource getHDFSIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 533 end line: 540 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4086 unit: private void refreshTailReferenceBuffer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 282 end line: 289 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4087 unit: private void processInsertion() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 402 end line: 410 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4088 unit: private void processSoftClip() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 432 end line: 439 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4089 unit: public Track calculateConsensusSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamManager.java start line: 208 end line: 215 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4090 unit: public BiologicalDataItemFile loadItemFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemManager.java start line: 214 end line: 221 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4091 unit: private void checkAndRevert() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceReconstructionManager.java start line: 398 end line: 405 size: 8 LOC McCabe index: 2 number of parameters: 3 id: 4092 unit: private void checkAllRolesPresent() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 99 end line: 106 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4093 unit: public Role deleteRole() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 83 end line: 90 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4094 unit: private void fetch() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GeneIndexIterator.java start line: 81 end line: 88 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4095 unit: public static AbstractGeneReader createGeneReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 117 end line: 124 size: 8 LOC McCabe index: 2 number of parameters: 3 id: 4096 unit: private static boolean isType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 408 end line: 416 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4097 unit: private static boolean isType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 418 end line: 426 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4098 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffCodec.java start line: 70 end line: 77 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4099 unit: public String toValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/StrandSerializable.java start line: 73 end line: 80 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4100 unit: public Set getAncestors() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 102 end line: 109 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4101 unit: public static Gff3Directive toDirective() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Codec.java start line: 82 end line: 89 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4102 unit: private int findIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsToGffConvertor.java start line: 195 end line: 202 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4103 unit: public FeatureCountsLineProcessor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsLineProcessor.java start line: 55 end line: 62 size: 8 LOC McCabe index: 1 number of parameters: 3 id: 4104 unit: private DimStructure dimStructureFromRecord() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 1020 end line: 1027 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4105 unit: private File createFileFromURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/DownloadFileManager.java start line: 151 end line: 158 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4106 unit: protected Variation findLastNotBndVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/AbstractVcfReader.java start line: 66 end line: 73 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4107 unit: private List getAllelesGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 488 end line: 495 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4108 unit: public void init() file: server/catgenome/src/main/java/com/epam/catgenome/manager/cloud/pipeline/CloudPipelineManager.java start line: 56 end line: 63 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4109 unit: public IndexSearchResult searchGenesByReference() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 485 end line: 492 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4110 unit: private static String serializeQueryFields() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 560 end line: 567 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4111 unit: private static BaseGeneEntity featureType2BaseGaneEntity() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ExtenalDBUtils.java start line: 179 end line: 186 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4112 unit: public NCBIGeneInfoManager() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneInfoManager.java start line: 71 end line: 78 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4113 unit: public void addDoc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneInfoManager.java start line: 164 end line: 171 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4114 unit: public GeneInfo entryFromDoc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneInfoManager.java start line: 173 end line: 180 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4115 unit: public String searchDbForId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIAuxiliaryManager.java start line: 130 end line: 137 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4116 unit: private List parseJsonFromPubmed() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneManager.java start line: 296 end line: 303 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4117 unit: public List readTaxonomy() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 167 end line: 174 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4118 unit: public Structure() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/dto/Structure.java start line: 47 end line: 54 size: 8 LOC McCabe index: 1 number of parameters: 7 id: 4119 unit: public TaskPage loadTasks() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 153 end line: 160 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4120 unit: public void init() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastRequestManager.java start line: 64 end line: 71 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4121 unit: public void delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 159 end line: 166 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4122 unit: public Query getByPhraseQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 233 end line: 240 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4123 unit: public NGBPathway registerPathway() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 146 end line: 153 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4124 unit: private void deleteDocument() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 316 end line: 323 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4125 unit: public String toString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/NggbSegFeature.java start line: 99 end line: 106 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4126 unit: public String makeGeneDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 430 end line: 438 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4127 unit: public File makeCytobandsFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 697 end line: 704 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4128 unit: public void deleteProjectDirectory() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1036 end line: 1044 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4129 unit: private File makeDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2279 end line: 2287 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4130 unit: public boolean hasFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/GenbankManager.java start line: 93 end line: 100 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4131 unit: public static String getSequenceId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/GenbankUtils.java start line: 76 end line: 83 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4132 unit: public static String getType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/GeneType.java start line: 94 end line: 101 size: 8 LOC McCabe index: 4 number of parameters: 2 id: 4133 unit: public PdbFile create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileManager.java start line: 82 end line: 89 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4134 unit: private static long getContentLength() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaUtils.java start line: 80 end line: 87 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4135 unit: private void readInBuff() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 427 end line: 434 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4136 unit: private boolean isSupported() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandReader.java start line: 161 end line: 168 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4137 unit: private Integer getInt() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandReader.java start line: 229 end line: 236 size: 8 LOC McCabe index: 2 number of parameters: 3 id: 4138 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataWriter.java start line: 54 end line: 62 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4139 unit: private String getIndexPath() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 666 end line: 674 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4140 unit: public Reference updateProteinSeqFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 379 end line: 386 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4141 unit: public Species registerSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 448 end line: 455 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4142 unit: private Chromosome getNextChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 514 end line: 521 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4143 unit: public RCSBApi buildClient() file: server/catgenome/src/main/java/com/epam/catgenome/client/rscb/RCSBApiBuilder.java start line: 46 end line: 53 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4144 unit: private OkHttpClient buildHttpClient() file: server/catgenome/src/main/java/com/epam/catgenome/client/rscb/RCSBApiBuilder.java start line: 55 end line: 62 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4145 unit: public CloudPipelineApi buildClient() file: server/catgenome/src/main/java/com/epam/catgenome/client/cloud/pipeline/CloudPipelineApiBuilder.java start line: 56 end line: 63 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4146 unit: public BlastApi buildClient() file: server/catgenome/src/main/java/com/epam/catgenome/client/blast/BlastApiBuilder.java start line: 56 end line: 63 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4147 unit: export function getFieldSet() file: client/client/dataServices/utils/highlight-condition-service.js start line: 228 end line: 235 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4148 unit: this._currentUser.hasRoles = function() file: client/client/dataServices/user/user-data-service.js start line: 62 end line: 69 size: 8 LOC McCabe index: 5 number of parameters: 1 id: 4149 unit: recoverBookmark() file: client/client/dataServices/local/local-data-service.js start line: 33 end line: 40 size: 8 LOC McCabe index: 4 number of parameters: 1 id: 4150 unit: static concatenateAlternativeAlleleDescription() file: client/client/dataServices/vcf/vcf-analyzer.js start line: 318 end line: 325 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4151 unit: set closeLastTrackIgnoreFormats() file: client/client/app/shared/appearanceContext/index.js start line: 32 end line: 39 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4152 unit: set projectId() file: client/client/app/shared/dispatcher/protocol/state.js start line: 22 end line: 29 size: 8 LOC McCabe index: 4 number of parameters: 1 id: 4153 unit: set geneTracks() file: client/client/app/shared/utils/events.js start line: 128 end line: 135 size: 8 LOC McCabe index: 4 number of parameters: 1 id: 4154 unit: export function camelPad() file: client/client/app/shared/utils/String.js start line: 11 end line: 22 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4155 unit: emit() file: client/client/app/shared/miewContext/index.js start line: 126 end line: 133 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4156 unit: substituteMessage() file: client/client/app/shared/components/ngbChat/ngbChat.controller.js start line: 101 end line: 108 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4157 unit: fetchAvailableRoles() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 102 end line: 109 size: 8 LOC McCabe index: 4 number of parameters: 0 id: 4158 unit: _mapGroupsAndRolesData() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 58 end line: 65 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4159 unit: fetchAll() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 71 end line: 78 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4160 unit: fileName() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromUrl/ngbOpenFileFromUrl.controller.js start line: 71 end line: 78 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4161 unit: openDlg() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettings.controller.js start line: 15 end line: 27 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4162 unit: _buildSettings() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 48 end line: 55 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4163 unit: _mergeColor() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 74 end line: 81 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4164 unit: constructor() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbCustomizationTableRow/ngbCustomizationTableRow.controller.js start line: 6 end line: 13 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4165 unit: set dragging() file: client/client/app/shared/components/ngbFloatingPanel/controller.js start line: 25 end line: 32 size: 8 LOC McCabe index: 4 number of parameters: 1 id: 4166 unit: onMouseUp() file: client/client/app/shared/components/ngbFloatingPanel/controller.js start line: 132 end line: 139 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4167 unit: template: require() file: client/client/app/shared/components/ngbMarkdown/ngbMarkdown.component.js start line: 18 end line: 25 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4168 unit: blatSearchPanelDestroyedHandler() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 510 end line: 517 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4169 unit: blastSearchPanelDestroyedHandler() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 519 end line: 526 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4170 unit: initialization() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 75 end line: 82 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4171 unit: controller: function() file: client/client/app/shared/components/ngbUiParts/ngbProjectTitle.component.js start line: 6 end line: 18 size: 8 LOC McCabe index: 1 number of parameters: 5 id: 4172 unit: template: require() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantDbSnp/ngbVariantDbSnp.component.js start line: 5 end line: 12 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4173 unit: set vcfColumns() file: client/client/app/shared/projectContext/index.js start line: 441 end line: 448 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4174 unit: get displayVariantsFilter() file: client/client/app/shared/projectContext/index.js start line: 724 end line: 731 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4175 unit: static propertyIsEmpty() file: client/client/app/shared/projectContext/index.js start line: 1397 end line: 1404 size: 8 LOC McCabe index: 4 number of parameters: 1 id: 4176 unit: constructor() file: client/client/app/shared/services/clientPaginationService.js start line: 5 end line: 12 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4177 unit: async _refreshDatasets() file: client/client/app/shared/services/api.service.js start line: 59 end line: 66 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4178 unit: _fileName() file: client/client/app/shared/services/api.service.js start line: 383 end line: 390 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4179 unit: async _getAllDataSets() file: client/client/app/shared/services/api.service.js start line: 523 end line: 531 size: 8 LOC McCabe index: 4 number of parameters: 0 id: 4180 unit: cancelNote() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 431 end line: 438 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4181 unit: _clearEnvironment() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 509 end line: 516 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4182 unit: saveNote() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoEditNote/ngbProjectInfoEditNote.controller.js start line: 14 end line: 21 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4183 unit: deleteNote() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoEditNote/ngbProjectInfoEditNote.controller.js start line: 23 end line: 30 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4184 unit: onClickSave() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 235 end line: 254 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4185 unit: get allGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 42 end line: 49 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4186 unit: resetIdentificationData() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 115 end line: 122 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4187 unit: getChipByGeneId() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 144 end line: 151 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4188 unit: getGeneIdByChip() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 153 end line: 160 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4189 unit: setDiseasesData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 139 end line: 146 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4190 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTablePagination/ngbDiseasesDrugsTablePagination.controller.js start line: 10 end line: 17 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4191 unit: async setPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTablePagination/ngbDiseasesDrugsTablePagination.controller.js start line: 34 end line: 41 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4192 unit: getCellStyle() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 43 end line: 50 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4193 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbTargetsTablePagination/ngbTargetsTablePagination.controller.js start line: 10 end line: 18 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4194 unit: async setPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbTargetsTablePagination/ngbTargetsTablePagination.controller.js start line: 35 end line: 42 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4195 unit: setTotalCounts() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 143 end line: 150 size: 8 LOC McCabe index: 6 number of parameters: 1 id: 4196 unit: set source() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 81 end line: 88 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4197 unit: set selectedGeneId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 56 end line: 63 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4198 unit: getRequestCommitPhase() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 133 end line: 140 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4199 unit: async loadData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 139 end line: 146 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4200 unit: setList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 38 end line: 45 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4201 unit: async setPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTablePagination/ngbDiseasesTablePagination.controller.js start line: 36 end line: 43 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4202 unit: rowTemplate: require() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 165 end line: 172 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4203 unit: changeDisplaySettings() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureViewer/ngbStructureViewer.controller.js start line: 37 end line: 44 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4204 unit: async setPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTablePagination/ngbStructureTablePagination.controller.js start line: 36 end line: 43 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4205 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 42 end line: 49 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4206 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 93 end line: 100 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4207 unit: async setPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTablePagination/ngbGenomicsTablePagination.controller.js start line: 36 end line: 43 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4208 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 42 end line: 49 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4209 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 93 end line: 100 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4210 unit: setFieldList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 385 end line: 392 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4211 unit: function findReferenceByName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 37 end line: 44 size: 8 LOC McCabe index: 6 number of parameters: 2 id: 4212 unit: setAllProteinOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 219 end line: 226 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4213 unit: _createRequestCommitPhase() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 89 end line: 96 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4214 unit: async finishSession() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 182 end line: 189 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4215 unit: getSequencesResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.service.js start line: 25 end line: 32 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4216 unit: async setPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTablePagination/ngbSequencesTablePagination.controller.js start line: 36 end line: 43 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4217 unit: function findReferenceByName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 6 end line: 13 size: 8 LOC McCabe index: 6 number of parameters: 2 id: 4218 unit: onClickSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 149 end line: 156 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4219 unit: navigateToReference() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 173 end line: 180 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4220 unit: onClickReference() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 349 end line: 356 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4221 unit: async setPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbChemicalTablePagination/ngbChemicalTablePagination.controller.js start line: 36 end line: 43 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4222 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 35 end line: 42 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4223 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 13 end line: 20 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4224 unit: setTableResultsOnPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 508 end line: 515 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4225 unit: async setPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbProteinTablePagination/ngbProteinTablePagination.controller.js start line: 36 end line: 43 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4226 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 35 end line: 42 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4227 unit: setList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 45 end line: 52 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4228 unit: async setPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTablePagination/ngbDrugsTablePagination.controller.js start line: 36 end line: 43 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4229 unit: viewDiseaseDetails() file: client/client/app/components/ngbTargetPanel/ngbDiseaseContextMenu/ngbDiseaseContextMenu.controller.js start line: 14 end line: 21 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4230 unit: async onChangeShowFilters() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableActions/ngbTargetsTableActions.controller.js start line: 18 end line: 25 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4231 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTablePaginate/ngbTargetsTablePaginate.controller.js start line: 9 end line: 16 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4232 unit: export function getGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/utilities/autocompleteFunctions.js start line: 6 end line: 13 size: 8 LOC McCabe index: 2 number of parameters: 4 id: 4233 unit: function getGroupItems() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetLaunchDialog/ngbTargetLaunchDialog.run.js start line: 69 end line: 76 size: 8 LOC McCabe index: 4 number of parameters: 1 id: 4234 unit: getTtdTargetsForRequest() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 541 end line: 548 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4235 unit: getParasiteGenesRequest() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 550 end line: 557 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4236 unit: async postNewParasiteTargetGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 559 end line: 566 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4237 unit: get isAddGeneDisabled() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 196 end line: 203 size: 8 LOC McCabe index: 5 number of parameters: 0 id: 4238 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 17 end line: 25 size: 8 LOC McCabe index: 1 number of parameters: 5 id: 4239 unit: setList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 41 end line: 48 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4240 unit: rowTemplate: require() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 192 end line: 199 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4241 unit: async reloadCurrentPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 244 end line: 251 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4242 unit: savedIdentificationGene() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 455 end line: 462 size: 8 LOC McCabe index: 4 number of parameters: 1 id: 4243 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableCells/ngbTargetGenesList/ngbTargetGenesList.controller.js start line: 11 end line: 18 size: 8 LOC McCabe index: 1 number of parameters: 5 id: 4244 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbGenesTablePagination/ngbGenesTablePagination.controller.js start line: 10 end line: 17 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4245 unit: async getMetadataColumns() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 148 end line: 155 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4246 unit: async getBlatSearchResults() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.service.js start line: 83 end line: 95 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4247 unit: async initialize() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.controller.js start line: 69 end line: 90 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4248 unit: createTarget() file: client/client/app/components/ngbHomologsPanel/ngbHomologsTableContextMenu/ngbHomologsTableContextMenu.controller.js start line: 27 end line: 34 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4249 unit: async initialize() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.controller.js start line: 69 end line: 90 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4250 unit: $onChanges() file: client/client/app/components/ngbHomologsPanel/ngbHomologsPanelPaginate/ngbHomologsPanelPaginate.controller.js start line: 11 end line: 18 size: 8 LOC McCabe index: 5 number of parameters: 1 id: 4251 unit: controller: function() file: client/client/app/components/ngbSashimiPlot/ngbSashimiPlot.run.js start line: 8 end line: 15 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4252 unit: export default function run() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.run.js start line: 1 end line: 44 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4253 unit: rowClick() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 106 end line: 113 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4254 unit: toTop() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 115 end line: 122 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4255 unit: toBottom() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 124 end line: 131 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4256 unit: close() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 172 end line: 179 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4257 unit: start: function() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 198 end line: 206 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4258 unit: export function sortObjectByKeyValue() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 28 end line: 35 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4259 unit: isDuplicate() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 122 end line: 129 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4260 unit: export function preprocessDatasetNote() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 24 end line: 31 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4261 unit: function _convertClientToServer() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 96 end line: 103 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4262 unit: export function selectRecursively() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 238 end line: 245 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4263 unit: updateDatasetState() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 111 end line: 118 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4264 unit: static sort() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 174 end line: 181 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4265 unit: updateTracksState() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 326 end line: 333 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4266 unit: template: require() file: client/client/app/components/ngbVcfSampleAliases/ngbVcfSampleAliases.run.js start line: 9 end line: 16 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4267 unit: constructor() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 51 end line: 58 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4268 unit: get displayGenesFilter() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 145 end line: 152 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4269 unit: clearGeneFieldFilter() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 532 end line: 539 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4270 unit: async initialize() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 109 end line: 129 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4271 unit: panelChanged() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 374 end line: 381 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4272 unit: onColumnChange() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableColumn/ngbGenesTableColumn.controller.js start line: 84 end line: 91 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4273 unit: template: require() file: client/client/app/components/ngbMolecularViewer/ngbPdbDescription/ngbPdbDescription.component.js start line: 4 end line: 11 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4274 unit: export default function() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/array-filter.js start line: 1 end line: 8 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4275 unit: onVariantsRestoreViewClick() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableColumn/ngbVariantsTableColumn.controller.js start line: 45 end line: 52 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4276 unit: fieldIsFiltered() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.service.js start line: 67 end line: 74 size: 8 LOC McCabe index: 4 number of parameters: 1 id: 4277 unit: export default function() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearch.date.filter.js start line: 1 end line: 8 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4278 unit: async initialize() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/ngbBlastSearchForm.controller.js start line: 85 end line: 92 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4279 unit: $onChanges() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanelPaginate/ngbBlastSearchPanelPaginate.controller.js start line: 11 end line: 18 size: 8 LOC McCabe index: 5 number of parameters: 1 id: 4280 unit: template: require() file: client/client/app/components/ngbTracksView/ngbTrackActions/ngbTrackActions.component.js start line: 5 end line: 12 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4281 unit: zoomIn() file: client/client/app/components/ngbTracksView/managers/ngbTracksView.zoom.manager.js start line: 15 end line: 22 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4282 unit: zoomOut() file: client/client/app/components/ngbTracksView/managers/ngbTracksView.zoom.manager.js start line: 24 end line: 31 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4283 unit: export default function() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbPreventAutoClose/index.js start line: 1 end line: 13 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4284 unit: function initializeCSVConfig() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 20 end line: 27 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4285 unit: function prepareConfigCSV() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.service.js start line: 45 end line: 52 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4286 unit: saveAnnotationList() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.service.js start line: 142 end line: 149 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4287 unit: save() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotationDlg/ngbPathwaysAnnotationAddDlg.controller.js start line: 35 end line: 42 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4288 unit: addAnnotation() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.controller.js start line: 98 end line: 110 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4289 unit: editAnnotation() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.controller.js start line: 112 end line: 124 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4290 unit: get displayInternalPathwaysFilter() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 82 end line: 89 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4291 unit: set currentState() file: client/client/app/components/ngbPathways/ngbPathways.service.js start line: 67 end line: 74 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4292 unit: initState() file: client/client/app/components/ngbPathways/ngbPathways.service.js start line: 114 end line: 121 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4293 unit: searchTree() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 434 end line: 441 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4294 unit: annotateTree() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 468 end line: 475 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4295 unit: template: require() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.component.js start line: 4 end line: 11 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4296 unit: $onChanges() file: client/client/app/components/ngbPathways/ngbPathwaysPanelPaginate/ngbPathwaysPanelPaginate.controller.js start line: 11 end line: 18 size: 8 LOC McCabe index: 5 number of parameters: 1 id: 4297 unit: export default function() file: client/client/app/components/ngbStrainLineage/cropFilter.js start line: 3 end line: 10 size: 8 LOC McCabe index: 4 number of parameters: 0 id: 4298 unit: async loadAllStrainLineages() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 46 end line: 53 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4299 unit: label: cropTitle() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 144 end line: 151 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4300 unit: template: require() file: client/client/app/components/ngbStrainLineage/ngbCytoscape/ngbCytoscape.component.js start line: 4 end line: 11 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4301 unit: set allSelected() file: client/client/app/components/ngbTracksSelection/ngbTracksSelection.controller.js start line: 98 end line: 105 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4302 unit: setTrackIsSelected() file: client/client/app/components/ngbTracksSelection/ngbTracksSelection.controller.js start line: 120 end line: 127 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4303 unit: onStateChange() file: client/client/app/components/ngbBrowser/ngbBrowser.controller.js start line: 41 end line: 48 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4304 unit: getFeatureInfo() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfo.controller.js start line: 31 end line: 40 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4305 unit: controller: function() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.run.js start line: 72 end line: 122 size: 8 LOC McCabe index: 7 number of parameters: 1 id: 4306 unit: get previousHeatmap() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 59 end line: 66 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4307 unit: hoverVerticalScroll() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRendererWIthVerticalScroll.js start line: 73 end line: 80 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4308 unit: unhoverVerticalScroll() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRendererWIthVerticalScroll.js start line: 82 end line: 89 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4309 unit: getShortenedSize() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 234 end line: 241 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4310 unit: end: parseFloat() file: client/client/modules/render/core/viewport/viewport.js start line: 369 end line: 376 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4311 unit: function getFilter() file: client/client/modules/render/core/menu/buildMenu.js start line: 1 end line: 8 size: 8 LOC McCabe index: 5 number of parameters: 1 id: 4312 unit: resizeScroll() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 771 end line: 778 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4313 unit: clearSelection() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 786 end line: 793 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4314 unit: function reduce() file: client/client/modules/render/tracks/wig/menu/coverageColorPerform.js start line: 17 end line: 24 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4315 unit: positive: combineColors() file: client/client/modules/render/tracks/wig/menu/coverageColorPerform.js start line: 22 end line: 30 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4316 unit: _checkTextureCoordinates() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 109 end line: 116 size: 8 LOC McCabe index: 9 number of parameters: 2 id: 4317 unit: _initReadColorModePairOrientation() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 122 end line: 129 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4318 unit: _initReadColorModeNomeSeqBisulfiteConversion() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 192 end line: 199 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4319 unit: _setColor() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 566 end line: 573 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4320 unit: set yPosition() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 114 end line: 121 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4321 unit: globalSettingsChanged() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 239 end line: 246 size: 8 LOC McCabe index: 4 number of parameters: 1 id: 4322 unit: _initPlaceholder() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 418 end line: 426 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4323 unit: _renderPlaceholders() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 428 end line: 435 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4324 unit: render() file: client/client/modules/render/tracks/bam/index.js start line: 626 end line: 633 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4325 unit: constructor() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/featureBaseRenderer.js start line: 11 end line: 18 size: 8 LOC McCabe index: 1 number of parameters: 6 id: 4326 unit: constructor() file: client/client/modules/render/tracks/gene/internal/renderer/features/geneHistogram.js start line: 11 end line: 18 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4327 unit: animate() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 524 end line: 531 size: 8 LOC McCabe index: 5 number of parameters: 1 id: 4328 unit: animate() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/vcfRenderer.js start line: 133 end line: 140 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4329 unit: const mapFn = function() file: client/client/modules/render/tracks/vcf/index.js start line: 324 end line: 331 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4330 unit: prevVariation() file: client/client/modules/render/tracks/vcf/index.js start line: 452 end line: 459 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4331 unit: setScrollPosition() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 295 end line: 302 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4332 unit: function renameSamples() file: client/client/modules/render/tracks/vcf/menu/generalMenu.js start line: 23 end line: 30 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4333 unit: changeBlatRegion() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 331 end line: 339 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4334 unit: createText() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 429 end line: 436 size: 8 LOC McCabe index: 1 number of parameters: 5 id: 4335 unit: static transform() file: client/client/modules/render/tracks/ruler/rulerTransformer.js start line: 63 end line: 70 size: 8 LOC McCabe index: 2 number of parameters: 3 id: 4336 unit: render() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 79 end line: 86 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4337 unit: createSelectableArea() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 137 end line: 144 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4338 unit: createPickLocationArea() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 146 end line: 153 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4339 unit: constructor() file: client/client/modules/render/tracks/featureCounts/index.js start line: 139 end line: 146 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4340 unit: async updateCache() file: client/client/modules/render/tracks/comparison/index.js start line: 35 end line: 42 size: 8 LOC McCabe index: 5 number of parameters: 0 id: 4341 unit: hoverVerticalScroll() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 99 end line: 106 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4342 unit: unhoverVerticalScroll() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 108 end line: 115 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4343 unit: _redrawAll() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 172 end line: 179 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4344 unit: _drawTrackLabel() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 227 end line: 234 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4345 unit: getTrackStatePayload() file: client/client/modules/render/tracks/heatmap/index.js start line: 46 end line: 53 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4346 unit: get stateKeys() file: client/client/modules/render/tracks/reference/index.js start line: 43 end line: 50 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4347 unit: function openLineage() file: client/client/modules/render/tracks/reference/menu/generalMenu.js start line: 5 end line: 12 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4348 unit: static getTextSize() file: client/client/modules/render/utilities/pixiTextSize.js start line: 14 end line: 21 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 4349 unit: export function getActionButton() file: client/client/modules/render/utilities/menu/actionButton.js start line: 1 end line: 9 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 4350 unit: function checkOpenedRangesOverlaps() file: client/client/modules/render/utilities/linearDimensionsConflicts.js start line: 73 end line: 80 size: 8 LOC McCabe index: 6 number of parameters: 5 id: 4351 unit: setPosition() file: client/client/modules/render/heatmap/renderer/heatmap-options-renderer/index.js start line: 112 end line: 119 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4352 unit: updateWindowSize() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/index.js start line: 82 end line: 89 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4353 unit: destroyChildren() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/binary-tree-graphics.js start line: 122 end line: 129 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4354 unit: updateSessionFlags() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/binary-tree-graphics.js start line: 169 end line: 176 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4355 unit: initialize() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 70 end line: 77 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4356 unit: getGlobalScaleDimension() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 207 end line: 214 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4357 unit: get height() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/axis-label.js start line: 252 end line: 259 size: 8 LOC McCabe index: 5 number of parameters: 0 id: 4358 unit: updateTicksPositions() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 424 end line: 431 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4359 unit: set visible() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 142 end line: 149 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4360 unit: render() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 260 end line: 267 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4361 unit: updateSessionFlags() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 369 end line: 376 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4362 unit: applyColorScheme() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/webgl-graphics.js start line: 14 end line: 21 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4363 unit: updateGraphics() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/webgl-graphics.js start line: 46 end line: 53 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4364 unit: destroy() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/canvas-graphics.js start line: 24 end line: 31 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4365 unit: get changed() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/index.js start line: 40 end line: 47 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4366 unit: constructor() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry.js start line: 10 end line: 29 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4367 unit: get start() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 94 end line: 101 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4368 unit: get end() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 103 end line: 110 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4369 unit: get invalid() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 131 end line: 138 size: 8 LOC McCabe index: 6 number of parameters: 0 id: 4370 unit: getCorrectedPosition() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 153 end line: 160 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4371 unit: getCorrectedPositionWithinAxis() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 162 end line: 169 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4372 unit: get invalid() file: client/client/modules/render/heatmap/viewport/index.js start line: 120 end line: 127 size: 8 LOC McCabe index: 6 number of parameters: 0 id: 4373 unit: function findReferenceByName() file: client/client/modules/render/heatmap/navigation/index.js start line: 11 end line: 18 size: 8 LOC McCabe index: 6 number of parameters: 2 id: 4374 unit: get columnAnnotationsAvailable() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 203 end line: 210 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4375 unit: get rowAnnotationsAvailable() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 212 end line: 219 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4376 unit: function parseDataItemAsString() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 23 end line: 30 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4377 unit: a: rotate() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 338 end line: 352 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4378 unit: set() file: client/client/modules/render/heatmap/utilities/make-initializable.js start line: 68 end line: 75 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4379 unit: calculateSize() file: client/client/modules/render/heatmap/utilities/trie.js start line: 140 end line: 147 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4380 unit: getHeatMapItemByOrderedIndex() file: client/client/modules/render/heatmap/utilities/heatmap-trie.js start line: 291 end line: 298 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4381 unit: updateOptionsAvailability() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 149 end line: 156 size: 8 LOC McCabe index: 5 number of parameters: 0 id: 4382 unit: setGradientStopsRegionOpenness() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 117 end line: 124 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4383 unit: get isSingleValue() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 138 end line: 145 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4384 unit: export function getAvailableColor() file: client/client/modules/render/heatmap/color-scheme/colors.js start line: 302 end line: 309 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 4385 unit: set value() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 133 end line: 140 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4386 unit: set singleValue() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 146 end line: 153 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4387 unit: _updateTotalDomainsCount() file: client/client/modules/render/variant-render/renderers/drawing/utilities/domain-colors-manager.js start line: 29 end line: 36 size: 8 LOC McCabe index: 3 number of parameters: 0 id: 4388 unit: _renderAltStructure() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 831 end line: 838 size: 8 LOC McCabe index: 4 number of parameters: 3 id: 4389 unit: _renderAlternativeAllele() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 203 end line: 210 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 4390 unit: updateVariant() file: client/client/modules/render/variant-render/variant-renderer.js start line: 85 end line: 92 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4391 unit: updateScene() file: client/client/modules/render/variant-render/variant-renderer.js start line: 171 end line: 178 size: 8 LOC McCabe index: 2 number of parameters: 0 id: 4392 unit: static reverseComplement() file: client/client/modules/render/variant-render/transformers/short-variant-transformer.js start line: 476 end line: 483 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 4393 unit: export function useTotalCountSequences() file: export-templates/target-identification/src/model/main.ts start line: 51 end line: 58 size: 8 LOC McCabe index: 1 number of parameters: 0 id: 4394 unit: function getItemPropertyFilterType() file: export-templates/target-identification/src/model/filtered-data.ts start line: 59 end line: 66 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4395 unit: function getFilterSuggestedType() file: export-templates/target-identification/src/model/filtered-data.ts start line: 78 end line: 85 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 4396 unit: function filterDataItemUsingListFilter() file: export-templates/target-identification/src/model/filtered-data.ts start line: 197 end line: 204 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4397 unit: function filterData() file: export-templates/target-identification/src/model/filtered-data.ts start line: 217 end line: 224 size: 8 LOC McCabe index: 2 number of parameters: 2 id: 4398 unit: exports.kill = function() file: desktop/src/ScriptUtils.js start line: 58 end line: 68 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4399 unit: public CommandConfiguration loadCommandConfiguration() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/ConfigurationLoader.java start line: 146 end line: 152 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4400 unit: public static String getNormalizeAndAbsolutePath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/Utils.java start line: 12 end line: 18 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4401 unit: public String formatItem() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 170 end line: 176 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4402 unit: static file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItemFormat.java start line: 133 end line: 139 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4403 unit: public PermissionGrantRequest() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionGrantRequest.java start line: 35 end line: 41 size: 7 LOC McCabe index: 1 number of parameters: 5 id: 4404 unit: public static AbstractResultPrinter getPrinter() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/printer/AbstractResultPrinter.java start line: 52 end line: 58 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4405 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/simple/SetTokenCommandHandler.java start line: 45 end line: 51 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4406 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/FileDeletionHandler.java start line: 56 end line: 62 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4407 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/species/SpeciesDeletionHandler.java start line: 65 end line: 71 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4408 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/species/SpeciesListHandler.java start line: 56 end line: 62 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4409 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/lineage/LineageTreeDeletionHandler.java start line: 58 end line: 64 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4410 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/lineage/LineageTreeListHandler.java start line: 55 end line: 61 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4411 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/blast/BlastDatabaseDeletionHandler.java start line: 53 end line: 59 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4412 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/pathway/PathwayDeletionHandler.java start line: 58 end line: 64 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4413 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/pathway/PathwayListHandler.java start line: 55 end line: 61 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4414 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/heatmap/HeatmapListHandler.java start line: 55 end line: 61 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4415 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/heatmap/HeatmapDeletionHandler.java start line: 58 end line: 64 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4416 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/coverage/CoverageListHandler.java start line: 55 end line: 61 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4417 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/pdb/PdbFileListHandler.java start line: 55 end line: 61 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4418 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/pdb/PdbFileDeletionHandler.java start line: 58 end line: 64 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4419 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/reference/ReferenceDeletionHandler.java start line: 57 end line: 63 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4420 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/reference/ReferenceListHandler.java start line: 59 end line: 65 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4421 unit: protected void setDefaultHeader() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 258 end line: 264 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4422 unit: public TomcatConfigurer tomcatConfigurerImpl() file: server/catgenome/src/main/java/com/epam/catgenome/app/AppMVCConfiguration.java start line: 81 end line: 87 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4423 unit: public void configureMessageConverters() file: server/catgenome/src/main/java/com/epam/catgenome/app/AppMVCConfiguration.java start line: 121 end line: 127 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4424 unit: public SAMLWebSSOHoKProcessingFilter samlWebSSOHoKProcessingFilter() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 442 end line: 448 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4425 unit: public int compare() file: server/catgenome/src/main/java/com/epam/catgenome/util/comparator/FeatureComparator.java start line: 43 end line: 49 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4426 unit: public FeatureIterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureIterator.java start line: 84 end line: 90 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4427 unit: public FeatureIterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureIterator.java start line: 96 end line: 102 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4428 unit: private Motif getMotif() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/MotifSearchIterator.java start line: 127 end line: 133 size: 7 LOC McCabe index: 2 number of parameters: 4 id: 4429 unit: private static String reverseAndComplement() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/MotifSearchIterator.java start line: 141 end line: 147 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4430 unit: public static String convertIupacToRegex() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/IupacRegexConverter.java start line: 54 end line: 60 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4431 unit: static String getRegexByIupacLetter() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/IupacRegex.java start line: 60 end line: 66 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4432 unit: static String getComplementRegexByIupacLetter() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/IupacRegex.java start line: 68 end line: 75 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4433 unit: public int readUnsignedByte() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataInputStream.java start line: 117 end line: 123 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4434 unit: public int read() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobInputStream.java start line: 44 end line: 50 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4435 unit: public SeekableStream getBufferedStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureSeekableStreamFactory.java start line: 60 end line: 66 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4436 unit: public AzureBlobSeekableStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobSeekableStream.java start line: 37 end line: 43 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4437 unit: BlobServiceClientBuilder configureCredential() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 76 end line: 82 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4438 unit: public static InputStream openStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/IOHelper.java start line: 70 end line: 76 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4439 unit: public InfoPattern() file: server/catgenome/src/main/java/com/epam/catgenome/util/InfoFieldParser.java start line: 81 end line: 87 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4440 unit: public static String changeChromosomeName() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 156 end line: 162 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4441 unit: public static double debugMeasureTime() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 376 end line: 382 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4442 unit: public static String addParametersToQuery() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 459 end line: 465 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4443 unit: public static String addPagingInfoToQuery() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 486 end line: 492 size: 7 LOC McCabe index: 4 number of parameters: 2 id: 4444 unit: public Iterator iterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 73 end line: 79 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4445 unit: public Long load() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 55 end line: 61 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4446 unit: public int read() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3ObjectChunkInputStream.java start line: 20 end line: 26 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4447 unit: public SeekableStream getBufferedStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3SeekableStreamFactory.java start line: 66 end line: 72 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4448 unit: public void evictFromCache() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/EhCacheBasedIndexCache.java start line: 46 end line: 53 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4449 unit: public String toString() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/EhCacheBasedIndexCache.java start line: 90 end line: 97 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4450 unit: public CloseableTribbleIterator iterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixFeatureReader.java start line: 166 end line: 172 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4451 unit: public Iterator query() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 639 end line: 645 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4452 unit: public Iterator query() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 655 end line: 661 size: 7 LOC McCabe index: 2 number of parameters: 3 id: 4453 unit: public String readLine() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixIteratorLineReader.java start line: 20 end line: 26 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4454 unit: public SeekableStream getBufferedStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbSeekableStreamFactory.java start line: 88 end line: 94 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4455 unit: public String encodeToken() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtTokenGenerator.java start line: 94 end line: 101 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4456 unit: public void setAuthenticated() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtAuthenticationToken.java start line: 48 end line: 54 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4457 unit: private List readAces() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 151 end line: 157 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4458 unit: private void setAces() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 168 end line: 174 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4459 unit: protected Sid createSid() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 432 end line: 438 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4460 unit: public boolean projectCanBeDeleted() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 204 end line: 210 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4461 unit: public boolean hasPermissionOnProject() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 123 end line: 131 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4462 unit: public boolean hasPermissionOnProjectByDescription() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 133 end line: 141 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4463 unit: public boolean hasPermissionOnGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 160 end line: 168 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4464 unit: public boolean readOnGeneFileIsAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 183 end line: 190 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4465 unit: public boolean readOnAHeatmapIsAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 192 end line: 198 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4466 unit: private MutableAcl deleteAllAces() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 323 end line: 329 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4467 unit: public static int unsetBits() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 29 end line: 35 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4468 unit: private Set getRequiredRoleIds() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLUserDetailsServiceImpl.java start line: 278 end line: 284 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4469 unit: public boolean compare() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SchemeInsensitiveUrlComparator.java start line: 15 end line: 21 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4470 unit: public ColumnMapping() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/FileExtensionMapping.java start line: 56 end line: 62 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4471 unit: public Object casted() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/FileExtensionMapping.java start line: 64 end line: 70 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4472 unit: public String proteinCacheKey() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Track.java start line: 100 end line: 106 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4473 unit: public static JwtRawToken fromCookie() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/JwtRawToken.java start line: 57 end line: 65 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4474 unit: public Set getAuthorities() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/NgbUser.java start line: 80 end line: 86 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4475 unit: public BamQueryOption() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 74 end line: 80 size: 7 LOC McCabe index: 1 number of parameters: 6 id: 4476 unit: private void addAdditionalFilters() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 287 end line: 293 size: 7 LOC McCabe index: 4 number of parameters: 1 id: 4477 unit: private void addAdditionalFilters() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 119 end line: 125 size: 7 LOC McCabe index: 4 number of parameters: 1 id: 4478 unit: private void addChromosomeFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 241 end line: 247 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4479 unit: private void addFeatureTypeFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 259 end line: 265 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4480 unit: private void tryAddFloatingFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 305 end line: 311 size: 7 LOC McCabe index: 3 number of parameters: 4 id: 4481 unit: private void tryAddIntegeralFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 313 end line: 319 size: 7 LOC McCabe index: 3 number of parameters: 4 id: 4482 unit: public static int getNibCode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/nucleotid/NibByteFormat.java start line: 157 end line: 163 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4483 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/FeatureIndexEntry.java start line: 80 end line: 86 size: 7 LOC McCabe index: 7 number of parameters: 1 id: 4484 unit: public NucleotideContent() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 19 end line: 25 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4485 unit: public SegRecord() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegRecord.java start line: 42 end line: 48 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4486 unit: public Motif() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/motif/Motif.java start line: 46 end line: 52 size: 7 LOC McCabe index: 1 number of parameters: 5 id: 4487 unit: public Person loadPersonByName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/person/PersonDao.java start line: 108 end line: 115 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4488 unit: public void createBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamFileDao.java start line: 77 end line: 84 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4489 unit: public void storeUrl() file: server/catgenome/src/main/java/com/epam/catgenome/dao/UrlShorterDao.java start line: 52 end line: 60 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4490 unit: public NgbUser updateUserRoles() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 176 end line: 182 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4491 unit: public List loadExistingGroupsFromList() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 210 end line: 216 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4492 unit: private static RowMapper getGroupRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 333 end line: 339 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4493 unit: private static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 372 end line: 378 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4494 unit: static Role parseRole() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 181 end line: 188 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4495 unit: public List loadBiologicalDataItemsByIds() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 159 end line: 166 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4496 unit: public void updateOwner() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 202 end line: 210 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4497 unit: public List loadFilesByNamesStrict() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 237 end line: 245 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4498 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 140 end line: 146 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4499 unit: public Boolean isProjectItemHidden() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 537 end line: 544 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4500 unit: public void hideProjectItem() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 552 end line: 559 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 4501 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 319 end line: 327 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4502 unit: public AbstractIndexSearcher() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/searcher/AbstractIndexSearcher.java start line: 55 end line: 61 size: 7 LOC McCabe index: 1 number of parameters: 4 id: 4503 unit: private static FieldType getType() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedIntPoint.java start line: 48 end line: 54 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4504 unit: public void setIntValues() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedIntPoint.java start line: 62 end line: 68 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4505 unit: private static FieldType getType() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedFloatPoint.java start line: 37 end line: 43 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4506 unit: public void setFloatValues() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedFloatPoint.java start line: 51 end line: 57 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4507 unit: private static FieldType getType() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedSetFloatPoint.java start line: 37 end line: 43 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4508 unit: public long getTotalIndexSize() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 822 end line: 828 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4509 unit: public MultiReader openMultiReader() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 867 end line: 873 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4510 unit: private Document searchDocument() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 1235 end line: 1241 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4511 unit: private TopDocs performSearchAfter() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 1256 end line: 1262 size: 7 LOC McCabe index: 2 number of parameters: 5 id: 4512 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/BigVcfFeatureIndexBuilder.java start line: 173 end line: 179 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4513 unit: private String buildFeatureType() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/AbstractDocumentBuilder.java start line: 312 end line: 318 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4514 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneAliasDao.java start line: 108 end line: 114 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4515 unit: static Alias parseAlias() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneAliasDao.java start line: 120 end line: 126 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4516 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologDatabaseDao.java start line: 93 end line: 99 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4517 unit: static HomologDatabase parseAlias() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologDatabaseDao.java start line: 105 end line: 111 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4518 unit: static RowMapper getSpeciesMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayOrganismDao.java start line: 130 end line: 136 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4519 unit: public void updateHeatmapRowTree() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 173 end line: 180 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 4520 unit: public void updateHeatmapColumnTree() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 183 end line: 190 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 4521 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 94 end line: 100 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4522 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 102 end line: 108 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4523 unit: public List loadAnnotationFileIdsByReferenceId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 338 end line: 344 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4524 unit: static MapSqlParameterSource getParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/SpeciesDao.java start line: 132 end line: 140 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4525 unit: public List loadBookmarksByIds() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 132 end line: 138 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4526 unit: public void insertBookmarkItems() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 155 end line: 161 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4527 unit: private String likeFilter() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 182 end line: 188 size: 7 LOC McCabe index: 3 number of parameters: 3 id: 4528 unit: private boolean isFilterEmpty() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 190 end line: 196 size: 7 LOC McCabe index: 8 number of parameters: 1 id: 4529 unit: private static void setStatus() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/UniprotConverter.java start line: 105 end line: 111 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4530 unit: public String toString() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 216 end line: 222 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4531 unit: public Result getArticleSummary() file: server/catgenome/src/main/java/com/epam/catgenome/controller/llm/LLMController.java start line: 61 end line: 67 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 4532 unit: public Result getPatentSummary() file: server/catgenome/src/main/java/com/epam/catgenome/controller/llm/LLMController.java start line: 77 end line: 83 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 4533 unit: public Result getChatResponse() file: server/catgenome/src/main/java/com/epam/catgenome/controller/llm/LLMController.java start line: 93 end line: 99 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 4534 unit: public final Result rename() file: server/catgenome/src/main/java/com/epam/catgenome/controller/dataitem/DataItemController.java start line: 141 end line: 147 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4535 unit: public Result reindexGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/GeneController.java start line: 142 end line: 148 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4536 unit: public final Result rename() file: server/catgenome/src/main/java/com/epam/catgenome/controller/project/ProjectController.java start line: 180 end line: 186 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4537 unit: public Result deleteProject() file: server/catgenome/src/main/java/com/epam/catgenome/controller/project/ProjectController.java start line: 499 end line: 505 size: 7 LOC McCabe index: 1 number of parameters: 4 id: 4538 unit: public Result reindexVcf() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vcf/VcfController.java start line: 126 end line: 132 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4539 unit: public Result fetchNCBIShortVariation() file: server/catgenome/src/main/java/com/epam/catgenome/controller/externaldb/ExternalDBController.java start line: 265 end line: 272 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4540 unit: public Result fetchNCBIStructVariation() file: server/catgenome/src/main/java/com/epam/catgenome/controller/externaldb/ExternalDBController.java start line: 282 end line: 289 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4541 unit: public Result fetchNCBIClinVariation() file: server/catgenome/src/main/java/com/epam/catgenome/controller/externaldb/ExternalDBController.java start line: 299 end line: 307 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4542 unit: public void getRawResult() file: server/catgenome/src/main/java/com/epam/catgenome/controller/blast/BlastController.java start line: 102 end line: 108 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4543 unit: public void loadPathwayContent() file: server/catgenome/src/main/java/com/epam/catgenome/controller/pathway/PathwayController.java start line: 95 end line: 101 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4544 unit: public Result updateCellAnnotation() file: server/catgenome/src/main/java/com/epam/catgenome/controller/heatmap/HeatmapController.java start line: 123 end line: 129 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4545 unit: private Object getPrincipal() file: server/catgenome/src/main/java/com/epam/catgenome/manager/AuthManager.java start line: 86 end line: 92 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4546 unit: public int count() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 54 end line: 60 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4547 unit: private List readHistogramPortion() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 507 end line: 513 size: 7 LOC McCabe index: 1 number of parameters: 4 id: 4548 unit: public String getExtension() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 640 end line: 646 size: 7 LOC McCabe index: 4 number of parameters: 1 id: 4549 unit: public String getArticleSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/LLMService.java start line: 65 end line: 71 size: 7 LOC McCabe index: 1 number of parameters: 4 id: 4550 unit: public String getPatentSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/LLMService.java start line: 73 end line: 79 size: 7 LOC McCabe index: 1 number of parameters: 4 id: 4551 unit: public CustomOpenAILLMClient() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/CustomOpenAILLMClient.java start line: 38 end line: 44 size: 7 LOC McCabe index: 1 number of parameters: 4 id: 4552 unit: default List adjustMessage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/LLMHandler.java start line: 62 end line: 68 size: 7 LOC McCabe index: 2 number of parameters: 3 id: 4553 unit: protected void prepareWigFileToWork() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/BedGraphProcessor.java start line: 95 end line: 101 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4554 unit: public void add() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/filters/RightSAMRecordFilter.java start line: 69 end line: 75 size: 7 LOC McCabe index: 2 number of parameters: 6 id: 4555 unit: public void add() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/filters/LeftSAMRecordFilter.java start line: 69 end line: 75 size: 7 LOC McCabe index: 2 number of parameters: 6 id: 4556 unit: private void checkLazyInit() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/ConstantMemorySAMRecordSampler.java start line: 156 end line: 162 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4557 unit: public void getReadsFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 190 end line: 197 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 4558 unit: private SamInputResource getHDFSSamInputResource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 600 end line: 606 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4559 unit: public List getSpliceJunctions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 246 end line: 252 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4560 unit: public List findFilesByName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemManager.java start line: 115 end line: 121 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4561 unit: public BiologicalDataItem findFileByBioItemId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemManager.java start line: 129 end line: 135 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4562 unit: public List loadCdsProteinSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceManager.java start line: 158 end line: 165 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 4563 unit: public NgbUser deleteUser() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 133 end line: 139 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4564 unit: private void updateUserRoles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 148 end line: 154 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4565 unit: public Role update() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 74 end line: 80 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4566 unit: public SecuredEntityManager getEntityManager() file: server/catgenome/src/main/java/com/epam/catgenome/manager/CompositeSecuredEntityManager.java start line: 58 end line: 64 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4567 unit: protected AbstractGeneReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 101 end line: 107 size: 7 LOC McCabe index: 1 number of parameters: 4 id: 4568 unit: private GeneFileType determineGeneFileType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 654 end line: 660 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4569 unit: private String decodeAttribute() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 331 end line: 337 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4570 unit: public static GffType forGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffCodec.java start line: 102 end line: 108 size: 7 LOC McCabe index: 4 number of parameters: 2 id: 4571 unit: private void addActivityIfRequired() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneActivityService.java start line: 104 end line: 110 size: 7 LOC McCabe index: 2 number of parameters: 4 id: 4572 unit: private Activity buildAttributeActivity() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneActivityService.java start line: 162 end line: 168 size: 7 LOC McCabe index: 2 number of parameters: 4 id: 4573 unit: private void addTopLevelFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 198 end line: 206 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4574 unit: private void addCoFeatureShallow() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 235 end line: 241 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4575 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 348 end line: 355 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4576 unit: private void initialize() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 47 end line: 53 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4577 unit: private void tryToWrite() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 60 end line: 66 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4578 unit: void writeAttributes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 82 end line: 89 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4579 unit: public static String encodeString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 137 end line: 145 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4580 unit: private void writeGffFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsToGffConvertor.java start line: 172 end line: 178 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4581 unit: private int calculateGeneEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsToGffConvertor.java start line: 208 end line: 214 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4582 unit: private StrandSerializable determineGeneStrand() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsToGffConvertor.java start line: 216 end line: 222 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4583 unit: private String findChromosomeName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsLineProcessor.java start line: 128 end line: 134 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4584 unit: private int calculateGeneStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsLineProcessor.java start line: 136 end line: 142 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4585 unit: private DimEntity dimSEntityFromRecord() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 1029 end line: 1035 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4586 unit: public Project load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 219 end line: 225 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4587 unit: public void moveProjectToParent() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 233 end line: 239 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4588 unit: private File makeDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/DownloadFileManager.java start line: 205 end line: 211 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4589 unit: public Variation getNextOrPreviousVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfSecurityService.java start line: 105 end line: 111 size: 7 LOC McCabe index: 1 number of parameters: 8 id: 4590 unit: public VcfFile create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfFileManager.java start line: 80 end line: 86 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4591 unit: public VcfFile load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfFileManager.java start line: 96 end line: 102 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4592 unit: public void deleteLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeManager.java start line: 112 end line: 118 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4593 unit: public List loadLineageTrees() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeManager.java start line: 130 end line: 136 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4594 unit: private IndexSearchResult mergeWithBookmarkSearch() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 748 end line: 754 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4595 unit: private static void ensemblExonVO2BaseGaneEntity() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ExtenalDBUtils.java start line: 151 end line: 157 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 4596 unit: private static void ensemblUtrVO2BaseGaneEntity() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ExtenalDBUtils.java start line: 171 end line: 177 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 4597 unit: private static PBDGaneEntity dbReferenceType2BaseGaneEntity() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ExtenalDBUtils.java start line: 194 end line: 200 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4598 unit: private static void parseStartEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ExtenalDBUtils.java start line: 202 end line: 208 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4599 unit: public SearchResult getProteinPatentsGoogle() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/GooglePatentManager.java start line: 81 end line: 88 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4600 unit: private void fillGeneAlsoKnownList() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 303 end line: 309 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4601 unit: public static Map getFastaMap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBISequencesManager.java start line: 61 end line: 67 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4602 unit: public Pair getPubmedHistoryQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneManager.java start line: 151 end line: 157 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4603 unit: public String fetchData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/HttpDataManager.java start line: 108 end line: 114 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4604 unit: public long getStructuresCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbEntriesManager.java start line: 92 end line: 98 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4605 unit: public BlastTask loadTask() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 93 end line: 99 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4606 unit: public Query getByOptionsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 219 end line: 225 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4607 unit: public void registerBioPAX() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 156 end line: 162 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4608 unit: public void deletePathway() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 192 end line: 198 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4609 unit: private String findName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 563 end line: 569 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4610 unit: private String normalizePath() file: server/catgenome/src/main/java/com/epam/catgenome/manager/aws/S3Manager.java start line: 80 end line: 86 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4611 unit: public SegFile load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegFileManager.java start line: 95 end line: 103 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4612 unit: private void parseSegMean() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/SegCodec.java start line: 118 end line: 124 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4613 unit: private void parseNumMark() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/SegCodec.java start line: 126 end line: 132 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4614 unit: public String getGeneDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 440 end line: 446 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4615 unit: public SimpleFSDirectory getIndexForProject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 891 end line: 899 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4616 unit: public AbstractFeatureReader makeGeneReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1219 end line: 1226 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 4617 unit: public File getMafTempIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1802 end line: 1809 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4618 unit: private static String getGeneFileExtension() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2171 end line: 2177 size: 7 LOC McCabe index: 4 number of parameters: 2 id: 4619 unit: public void configure() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2193 end line: 2200 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4620 unit: public static InputStream export() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/ExcelExportUtils.java start line: 48 end line: 54 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4621 unit: public String genbankToFasta() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/GenbankManager.java start line: 169 end line: 175 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4622 unit: private Location parseFeatureLocation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/GenbankManager.java start line: 208 end line: 214 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4623 unit: public static Map readGenbankDNASequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/GenbankUtils.java start line: 68 end line: 74 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4624 unit: public Map getItems() file: server/catgenome/src/main/java/com/epam/catgenome/manager/metadata/MetadataManager.java start line: 100 end line: 106 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4625 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileManager.java start line: 113 end line: 119 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4626 unit: private void add() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaIndex.java start line: 73 end line: 79 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4627 unit: public String toString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaIndex.java start line: 153 end line: 159 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4628 unit: private SAMSequenceDictionary createDictionary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/ChromosomeReferenceSequence.java start line: 75 end line: 81 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4629 unit: public ReferenceSequence getSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/ChromosomeReferenceSequence.java start line: 107 end line: 113 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4630 unit: private static URLConnection openConnection() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaUtils.java start line: 47 end line: 53 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4631 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 96 end line: 102 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4632 unit: public Species unregisterSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 475 end line: 482 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4633 unit: private int validateAndAdjustOverlap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 460 end line: 466 size: 7 LOC McCabe index: 4 number of parameters: 1 id: 4634 unit: private Chromosome fetchChromosomeById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 533 end line: 539 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4635 unit: public Bookmark delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/BookmarkManager.java start line: 140 end line: 146 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4636 unit: public IndexSearchResult searchBookmarks() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/BookmarkManager.java start line: 154 end line: 161 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4637 unit: public Response intercept() file: server/catgenome/src/main/java/com/epam/catgenome/client/TokenInterceptor.java start line: 45 end line: 51 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4638 unit: public Response intercept() file: server/catgenome/src/main/java/com/epam/catgenome/client/CookieInterceptor.java start line: 39 end line: 45 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4639 unit: getVersion() file: client/client/dataServices/others/others-data-service.js start line: 8 end line: 14 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4640 unit: static updateFeatureName() file: client/client/dataServices/gene/gene-feature-analyzer.js start line: 2 end line: 8 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4641 unit: constructor() file: client/client/dataServices/local/local-data-service.js start line: 7 end line: 13 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4642 unit: getBookmark() file: client/client/dataServices/local/local-data-service.js start line: 25 end line: 31 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4643 unit: saveBookmark() file: client/client/dataServices/local/local-data-service.js start line: 42 end line: 48 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4644 unit: deleteProject() file: client/client/dataServices/project/project-data-service.js start line: 112 end line: 118 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4645 unit: set heatmap() file: client/client/app/shared/heatmapContext/index.js start line: 103 end line: 109 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4646 unit: constructor() file: client/client/app/shared/selectionContext/index.js start line: 20 end line: 26 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4647 unit: selectAll() file: client/client/app/shared/selectionContext/index.js start line: 56 end line: 62 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4648 unit: function hashCode() file: client/client/app/shared/utils/calculateColor.js start line: 5 end line: 11 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4649 unit: export function stringParseInt() file: client/client/app/shared/utils/Int.js start line: 1 end line: 7 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4650 unit: constructor() file: client/client/app/shared/miewContext/index.js start line: 46 end line: 52 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4651 unit: set routeInfo() file: client/client/app/shared/miewContext/index.js start line: 71 end line: 78 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4652 unit: _unbind() file: client/client/app/shared/eventHotkeys/index.js start line: 55 end line: 61 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4653 unit: attach() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.builder.js start line: 61 end line: 67 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4654 unit: setLocals() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.builder.js start line: 69 end line: 75 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4655 unit: function getCssPropertiesOfEvent() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.directive.js start line: 87 end line: 95 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4656 unit: function openContextMenu() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.directive.js start line: 97 end line: 104 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4657 unit: get currentRolesIds() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 23 end line: 29 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4658 unit: _mapRoleUsers() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 87 end line: 93 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4659 unit: discardDirectoryTyping() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 213 end line: 219 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4660 unit: constructor() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFile.controller.js start line: 13 end line: 19 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4661 unit: onClick() file: client/client/app/shared/components/ngbMainSettings/ngbGroupedCheckbox/ngbGroupedCheckbox.controller.js start line: 25 end line: 31 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4662 unit: save() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.controller.js start line: 59 end line: 65 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4663 unit: updateThisLocalSettingsVar() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 35 end line: 41 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4664 unit: _pickOutDefaultFeatures() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 125 end line: 131 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4665 unit: setPosition() file: client/client/app/shared/components/ngbFloatingPanel/controller.js start line: 75 end line: 81 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4666 unit: closePanel() file: client/client/app/shared/components/ngbFloatingPanel/controller.js start line: 141 end line: 147 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4667 unit: configure() file: client/client/app/shared/components/ngbLLM/ngbLLM.controller.js start line: 90 end line: 96 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4668 unit: async getLLMSettings() file: client/client/app/shared/components/ngbLLM/ngbLLM.controller.js start line: 109 end line: 115 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4669 unit: controller: function() file: client/client/app/shared/components/ngbMarkdown/ngbMarkdown.component.js start line: 19 end line: 25 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4670 unit: getPanels() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.service.js start line: 18 end line: 25 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4671 unit: panelRemove() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 696 end line: 702 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4672 unit: restoreDefault() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 717 end line: 723 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4673 unit: function findBestFeatureFn() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/parse-coordinates.js start line: 56 end line: 62 size: 7 LOC McCabe index: 6 number of parameters: 1 id: 4674 unit: template: require() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.component.js start line: 5 end line: 11 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4675 unit: loadProjectData() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 73 end line: 79 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4676 unit: template: require() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantInfo/ngbVariantInfo.component.js start line: 5 end line: 11 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4677 unit: static trimString() file: client/client/app/shared/components/ngbVariantDetails/utilities/ngbVariantDetails.utilities.js start line: 3 end line: 9 size: 7 LOC McCabe index: 4 number of parameters: 2 id: 4678 unit: static trimStringsInArray() file: client/client/app/shared/components/ngbVariantDetails/utilities/ngbVariantDetails.utilities.js start line: 10 end line: 16 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4679 unit: template: require() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantAnnotations/ngbVariantAnnotations.component.js start line: 5 end line: 11 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4680 unit: getTrackState() file: client/client/app/shared/projectContext/index.js start line: 526 end line: 532 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4681 unit: saveAnnotationFilesState() file: client/client/app/shared/projectContext/index.js start line: 622 end line: 628 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4682 unit: setDisplayVariantsFilter() file: client/client/app/shared/projectContext/index.js start line: 733 end line: 739 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4683 unit: loadDatasetDescription() file: client/client/app/shared/projectContext/index.js start line: 1003 end line: 1009 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4684 unit: name: decodeURIComponent() file: client/client/app/shared/projectContext/index.js start line: 1698 end line: 1704 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4685 unit: $() file: client/client/app/shared/browserDetect/index.js start line: 102 end line: 108 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4686 unit: updateNamesFromLocalStorage() file: client/client/app/shared/services/trackNaming.service.js start line: 17 end line: 23 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4687 unit: nameChanged() file: client/client/app/shared/services/trackNaming.service.js start line: 25 end line: 31 size: 7 LOC McCabe index: 4 number of parameters: 1 id: 4688 unit: getCustomName() file: client/client/app/shared/services/trackNaming.service.js start line: 52 end line: 58 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4689 unit: setToken() file: client/client/app/shared/services/api.service.js start line: 294 end line: 300 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4690 unit: _handleEvent() file: client/client/app/shared/lastActionRepeater/index.js start line: 14 end line: 20 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4691 unit: onButtonClick() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoSections/ngbProjectInfoSections.controller.js start line: 14 end line: 20 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4692 unit: constructor() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 21 end line: 27 size: 7 LOC McCabe index: 1 number of parameters: 6 id: 4693 unit: editNote() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 423 end line: 429 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4694 unit: async getLLMSettings() file: client/client/app/components/ngbTargetPanel/ngbTargetLLM.service.js start line: 39 end line: 45 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4695 unit: changeTab() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 149 end line: 155 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4696 unit: get genesIds() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 34 end line: 40 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4697 unit: async getDiseasesList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 95 end line: 101 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4698 unit: async getDataOnPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 251 end line: 257 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4699 unit: displayList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 67 end line: 73 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4700 unit: onChange() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 88 end line: 94 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4701 unit: hideListDelayed() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 96 end line: 102 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4702 unit: setDisplayText() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbDiseasesTargetsFilterList.controller.js start line: 32 end line: 38 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4703 unit: displayList() file: 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of parameters: 1 id: 4710 unit: setDiseasesList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 57 end line: 63 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4711 unit: async getDataOnPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 147 end line: 153 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4712 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 41 end line: 47 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 4713 unit: get targetId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 91 end line: 97 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4714 unit: getRequest() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 155 end line: 161 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4715 unit: hideInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 177 end line: 183 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4716 unit: draw() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 215 end line: 221 size: 7 LOC McCabe index: 4 number of parameters: 0 id: 4717 unit: displayList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 57 end line: 63 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4718 unit: onChange() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 78 end line: 84 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4719 unit: hideListDelayed() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 86 end line: 92 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4720 unit: apply() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterInput/ngbDiseasesFilterInput.controller.js start line: 21 end line: 27 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4721 unit: async getDataOnPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 322 end line: 328 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4722 unit: get targetId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 221 end line: 227 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4723 unit: async getDataOnPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 129 end line: 135 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4724 unit: async rowClick() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 143 end line: 149 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4725 unit: async filterChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 301 end line: 307 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4726 unit: setDisplayText() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 34 end line: 40 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4727 unit: displayList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 70 end line: 76 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4728 unit: onChange() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 91 end line: 97 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4729 unit: hideListDelayed() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 99 end line: 105 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4730 unit: get translationalSpecies() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 100 end line: 106 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4731 unit: get interestSpecies() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 108 end line: 114 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4732 unit: get targetId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 133 end line: 139 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4733 unit: getGenomicsParasiteResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 539 end line: 545 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4734 unit: get targetType() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 102 end line: 108 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4735 unit: get taxId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 140 end line: 146 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4736 unit: viewOnTrack() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 267 end line: 273 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4737 unit: async getSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.service.js start line: 38 end line: 44 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4738 unit: export default function() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequenceTableContextMenu/ngbSequenceTableContextMenu.factory.js start line: 1 end line: 7 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4739 unit: copyToClipboard() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequenceTableContextMenu/ngbSequenceTableContextMenu.controller.js start line: 37 end line: 43 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4740 unit: get targetId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 111 end line: 117 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4741 unit: async onClickSearch() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.controller.js start line: 117 end line: 123 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4742 unit: reset() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSummary/ngbPatentsSummary.controller.js start line: 88 end line: 94 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4743 unit: async getDataOnPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 163 end line: 169 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4744 unit: get targetId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 281 end line: 287 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4745 unit: async getDefaultSettings() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 301 end line: 307 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4746 unit: async getDataOnPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 179 end line: 185 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4747 unit: async getDataOnPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 288 end line: 294 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4748 unit: displayList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 64 end line: 70 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4749 unit: onChange() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 85 end line: 91 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4750 unit: hideListDelayed() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 93 end line: 99 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4751 unit: get targetId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 92 end line: 98 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4752 unit: export default function() file: client/client/app/components/ngbTargetPanel/ngbDiseaseContextMenu/ngbDiseaseContextMenu.factory.js start line: 1 end line: 7 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4753 unit: export default function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetContextMenu.factory.js start line: 1 end line: 7 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4754 unit: controller: function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetSavedIdentificationsDialog/ngbTargetSavedIdentificationsDialog.run.js start line: 20 end line: 238 size: 7 LOC McCabe index: 9 number of parameters: 1 id: 4755 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 143 end line: 158 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4756 unit: displayList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 59 end line: 65 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4757 unit: onChange() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 80 end line: 86 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4758 unit: hideListDelayed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 88 end line: 94 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4759 unit: putParasiteGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 842 end line: 848 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4760 unit: deleteParasiteTargetGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 863 end line: 869 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4761 unit: createTargetFromHomologs() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 888 end line: 894 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4762 unit: selectedGeneChanged() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 958 end line: 964 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4763 unit: displayList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 60 end line: 66 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4764 unit: onChange() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 96 end line: 102 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4765 unit: hideListDelayed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 104 end line: 110 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4766 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 188 end line: 202 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4767 unit: async setPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbGenesTablePagination/ngbGenesTablePagination.controller.js start line: 34 end line: 40 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4768 unit: displayList() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbMotifsResultsFilterList.controller.js start line: 117 end line: 123 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4769 unit: hideListDelayed() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbMotifsResultsFilterList.controller.js start line: 148 end line: 154 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4770 unit: $onChanges() file: client/client/app/components/ngbHomologsPanel/ngbHomologsDomains/ngbHomologsDomains.controller.js start line: 29 end line: 35 size: 7 LOC McCabe index: 4 number of parameters: 1 id: 4771 unit: static instance() file: client/client/app/components/ngbHomologsPanel/ngbHomologs.service.js start line: 38 end line: 44 size: 7 LOC McCabe index: 1 number of parameters: 6 id: 4772 unit: export default function() file: client/client/app/components/ngbHomologsPanel/ngbHomologsTableContextMenu/ngbHomologsTableContextMenu.factory.js start line: 1 end line: 7 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4773 unit: $onInit() file: client/client/app/components/ngbSashimiPlot/ngbSashimiPlot.controller.js start line: 44 end line: 50 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4774 unit: constructor() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbBookmarksFilterList.controller.js start line: 12 end line: 18 size: 7 LOC McCabe index: 1 number of parameters: 5 id: 4775 unit: displayList() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbBookmarksFilterList.controller.js start line: 96 end line: 102 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4776 unit: hideListDelayed() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbBookmarksFilterList.controller.js start line: 127 end line: 133 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4777 unit: export default function() file: client/client/app/components/ngbDataSets/internal/ngbDataSetContextMenu/ngbDataSetContextMenu.factory.js start line: 1 end line: 7 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4778 unit: template: require() file: client/client/app/components/ngbDataSets/internal/ngbDataSetContextMenu/ngbDataSetContextMenu.controller.js start line: 56 end line: 67 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4779 unit: export function findSelectedItems() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 447 end line: 464 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4780 unit: static getNodeAclClass() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.service.js start line: 19 end line: 25 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4781 unit: getUsers() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.service.js start line: 27 end line: 33 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4782 unit: searchPatternChanged() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 186 end line: 192 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4783 unit: getItemReference() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 187 end line: 193 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4784 unit: deselectAll() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 222 end line: 228 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4785 unit: constructor() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableDownload/ngbGenesTableDownloadDlg.controller.js start line: 18 end line: 25 size: 7 LOC McCabe index: 1 number of parameters: 4 id: 4786 unit: setDisplayGenesFilter() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 258 end line: 264 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4787 unit: getColumnDisplayName() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 483 end line: 489 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4788 unit: displayList() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbGenesFilterList.controller.js start line: 79 end line: 85 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4789 unit: hideListDelayed() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbGenesFilterList.controller.js start line: 110 end line: 116 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4790 unit: export default function() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableContextMenu/ngbGenesTableContextMenu.factory.js start line: 1 end line: 7 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4791 unit: displayList() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterList/ngbVariantsFilterList.controller.js start line: 81 end line: 87 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4792 unit: hideListDelayed() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterList/ngbVariantsFilterList.controller.js start line: 114 end line: 120 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4793 unit: displayList() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbCoverageFilterList.controller.js start line: 60 end line: 66 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4794 unit: hideListDelayed() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbCoverageFilterList.controller.js start line: 81 end line: 87 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4795 unit: async updateCoverageIndexes() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 48 end line: 54 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4796 unit: onExternalChange() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/ngbBlastSearchForm.controller.js start line: 94 end line: 100 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4797 unit: async initialize() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResult.controller.js start line: 32 end line: 38 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4798 unit: onExternalChange() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.controller.js start line: 91 end line: 97 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4799 unit: constructor() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignmentList.controller.js start line: 13 end line: 19 size: 7 LOC McCabe index: 1 number of parameters: 4 id: 4800 unit: constructor() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.service.js start line: 6 end line: 12 size: 7 LOC McCabe index: 1 number of parameters: 4 id: 4801 unit: $onChanges() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.controller.js start line: 62 end line: 68 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4802 unit: hotKeyListener() file: client/client/app/components/ngbTracksView/ngbTracksView.controller.js start line: 110 end line: 117 size: 7 LOC McCabe index: 5 number of parameters: 1 id: 4803 unit: convertDecimalToHex() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbBedColorPreference/ngbBedColorPreference.controller.js start line: 29 end line: 35 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4804 unit: convertDecimalToHex() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbMotifsColorPreference/ngbMotifsColorPreference.controller.js start line: 30 end line: 36 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4805 unit: $scope.save = function() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbHeatmapColorSchemePreference/ngbHeatmapColorSchemePreference.run.js start line: 19 end line: 25 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4806 unit: convertDecimalToHex() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbWigColorPreference/ngbWigColorPreference.controller.js start line: 33 end line: 39 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4807 unit: openOrCloseMinifiedMenu() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 535 end line: 541 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4808 unit: get types() file: client/client/app/components/ngbTracksView/ngbTracksSelectionMenu/ngbTracksSelectionMenu.controller.js start line: 80 end line: 86 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4809 unit: function getAllValuesList() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 87 end line: 93 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4810 unit: applyAnnotations() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.controller.js start line: 90 end line: 96 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4811 unit: onElementClick() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.controller.js start line: 152 end line: 158 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4812 unit: async searchGenes() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.service.js start line: 82 end line: 88 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4813 unit: displayList() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysFilterList/ngbInternalPathwaysFilterList.controller.js start line: 61 end line: 67 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4814 unit: hideListDelayed() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysFilterList/ngbInternalPathwaysFilterList.controller.js start line: 92 end line: 98 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4815 unit: static instance() file: client/client/app/components/ngbPathways/ngbPathways.service.js start line: 100 end line: 106 size: 7 LOC McCabe index: 1 number of parameters: 5 id: 4816 unit: recoverLocalState() file: client/client/app/components/ngbPathways/ngbPathways.service.js start line: 123 end line: 129 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4817 unit: updateBackground() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbPathwayAnnotationMark/ngbPathwayAnnotationMark.controller.js start line: 83 end line: 89 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4818 unit: onMouseDown() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbInternalPathwayNode.controller.js start line: 54 end line: 60 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4819 unit: wrapNodes() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 171 end line: 204 size: 7 LOC McCabe index: 2 number of parameters: 4 id: 4820 unit: zoomIn() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 317 end line: 323 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4821 unit: zoomOut() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 324 end line: 330 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4822 unit: onMouseDown() file: client/client/app/components/ngbStrainLineage/ngbStrainLineageNode/ngbStrainLineageNode.controller.js start line: 27 end line: 33 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4823 unit: navigate() file: client/client/app/components/ngbStrainLineage/ngbStrainLineageNode/ngbStrainLineageNode.controller.js start line: 61 end line: 67 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4824 unit: constructor() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 14 end line: 20 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4825 unit: _formatCutListToClient() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 116 end line: 122 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4826 unit: wrapNodes() file: client/client/app/components/ngbStrainLineage/ngbCytoscape/ngbCytoscape.controller.js start line: 90 end line: 109 size: 7 LOC McCabe index: 2 number of parameters: 3 id: 4827 unit: zoomIn() file: client/client/app/components/ngbStrainLineage/ngbCytoscape/ngbCytoscape.controller.js start line: 194 end line: 200 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4828 unit: zoomOut() file: client/client/app/components/ngbStrainLineage/ngbCytoscape/ngbCytoscape.controller.js start line: 201 end line: 207 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4829 unit: onElementClick() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.controller.js start line: 127 end line: 133 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4830 unit: navigate() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.controller.js start line: 194 end line: 200 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4831 unit: openMenu() file: client/client/app/components/ngbTracksSelection/ngbTracksSelection.controller.js start line: 58 end line: 64 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4832 unit: function dateString() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 3 end line: 9 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4833 unit: function getScreenResolution() file: client/client/modules/render/core/configuration/drawingConfiguration.js start line: 10 end line: 16 size: 7 LOC McCabe index: 4 number of parameters: 0 id: 4834 unit: _onMouseOut() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 125 end line: 131 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4835 unit: getScrollPosition() file: client/client/modules/render/core/track/scrollableTrack/scrollableTrack.js start line: 20 end line: 26 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4836 unit: cacheUpdateInitialParameters() file: client/client/modules/render/core/track/cachedTrack/cachedTrack.js start line: 67 end line: 73 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4837 unit: resize() file: client/client/modules/render/core/viewport/baseViewport.js start line: 109 end line: 115 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4838 unit: getShortenedPosition() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 265 end line: 271 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4839 unit: getShortenedRelativePosition() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 273 end line: 279 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4840 unit: start: parseFloat() file: client/client/modules/render/core/viewport/viewport.js start line: 370 end line: 376 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4841 unit: get: function() file: client/client/modules/render/core/menu/index.js start line: 28 end line: 34 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4842 unit: getSettings() file: client/client/modules/render/tracks/bed/index.js start line: 60 end line: 66 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4843 unit: function getCommonColor() file: client/client/modules/render/tracks/bed/menu/generalMenu.js start line: 8 end line: 14 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4844 unit: constructor() file: client/client/modules/render/tracks/wig/wigRenderer.js start line: 11 end line: 17 size: 7 LOC McCabe index: 2 number of parameters: 3 id: 4845 unit: getSettings() file: client/client/modules/render/tracks/wig/index.js start line: 73 end line: 79 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4846 unit: onMouseOut() file: client/client/modules/render/tracks/wig/index.js start line: 140 end line: 146 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4847 unit: getExtremumValues() file: client/client/modules/render/tracks/wig/wigTransformer.js start line: 16 end line: 22 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4848 unit: moveLineSlice() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderProcessor.js start line: 95 end line: 101 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4849 unit: function intersects() file: client/client/modules/render/tracks/bam/internal/renderer/features/spliceJunctions/sashimiRenderer.js start line: 7 end line: 13 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4850 unit: get spliceJunctionsTopMargin() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 155 end line: 161 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4851 unit: mateStrand: testBit() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 286 end line: 294 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4852 unit: onMouseOut() file: client/client/modules/render/tracks/bam/index.js start line: 594 end line: 600 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4853 unit: get stateKeys() file: client/client/modules/render/tracks/motifs/index.js start line: 74 end line: 80 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4854 unit: getSettings() file: client/client/modules/render/tracks/motifs/index.js start line: 101 end line: 107 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4855 unit: function getCommonColor() file: client/client/modules/render/tracks/motifs/exterior/motifsMenuConfig.js start line: 8 end line: 14 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4856 unit: static getStrandDirectionEnumValue() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/aminoacidFeatureRenderer.js start line: 81 end line: 87 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4857 unit: static getFeatureFillColor() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/geneFeatureRenderer.js start line: 106 end line: 112 size: 7 LOC McCabe index: 4 number of parameters: 3 id: 4858 unit: checkPosition() file: client/client/modules/render/tracks/gene/internal/renderer/features/geneHistogram.js start line: 56 end line: 62 size: 7 LOC McCabe index: 2 number of parameters: 3 id: 4859 unit: prepareRenderers() file: client/client/modules/render/tracks/gene/internal/renderer/features/featureRenderer.js start line: 105 end line: 111 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4860 unit: getSettings() file: client/client/modules/render/tracks/gene/index.js start line: 192 end line: 198 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4861 unit: globalSettingsChanged() file: client/client/modules/render/tracks/gene/index.js start line: 249 end line: 256 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4862 unit: getFeatureDisplayText() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/svFeatureRenderer.js start line: 5 end line: 11 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4863 unit: export function initializeContainer() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainerInitializer.js start line: 5 end line: 11 size: 7 LOC McCabe index: 2 number of parameters: 4 id: 4864 unit: render() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/statisticsContainer.js start line: 10 end line: 16 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4865 unit: isHovers() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/baseContainer.js start line: 61 end line: 67 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4866 unit: _drawChromosomeLine() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/vcfRenderer.js start line: 79 end line: 85 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4867 unit: getScrollPosition() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 234 end line: 240 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4868 unit: hoverVerticalScroll() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 304 end line: 310 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4869 unit: unhoverVerticalScroll() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 312 end line: 318 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4870 unit: static appendTickGraphics() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 394 end line: 400 size: 7 LOC McCabe index: 1 number of parameters: 4 id: 4871 unit: clearData() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 71 end line: 77 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4872 unit: get actualHeight() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 87 end line: 93 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4873 unit: static getFeatureFillColor() file: client/client/modules/render/tracks/featureCounts/internal/renderer/features/drawing/fcFeatureRenderer.js start line: 93 end line: 99 size: 7 LOC McCabe index: 4 number of parameters: 3 id: 4874 unit: function extractValues() file: client/client/modules/render/tracks/featureCounts/internal/data/featureCountsTransformer.js start line: 14 end line: 20 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4875 unit: getSettings() file: client/client/modules/render/tracks/seg/index.js start line: 30 end line: 36 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4876 unit: canScroll() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 117 end line: 123 size: 7 LOC McCabe index: 4 number of parameters: 1 id: 4877 unit: _clearAll() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 182 end line: 188 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4878 unit: render() file: client/client/modules/render/tracks/reference/referenceRenderer.js start line: 38 end line: 45 size: 7 LOC McCabe index: 4 number of parameters: 5 id: 4879 unit: getSettings() file: client/client/modules/render/tracks/reference/index.js start line: 65 end line: 71 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4880 unit: removeGroup() file: client/client/modules/render/utilities/groupAutoScaleManager.js start line: 91 end line: 97 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4881 unit: detachTrackData() file: client/client/modules/render/utilities/groupAutoScaleManager.js start line: 106 end line: 112 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4882 unit: getGroupData() file: client/client/modules/render/utilities/groupAutoScaleManager.js start line: 114 end line: 120 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4883 unit: reportTrackDataChangedForGroup() file: client/client/modules/render/utilities/groupAutoScaleManager.js start line: 193 end line: 199 size: 7 LOC McCabe index: 5 number of parameters: 1 id: 4884 unit: checkRenderRequest() file: client/client/modules/render/heatmap/interactions/index.js start line: 75 end line: 81 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4885 unit: onDoubleClick() file: client/client/modules/render/heatmap/interactions/interactive-zone.js start line: 158 end line: 164 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4886 unit: set visible() file: client/client/modules/render/heatmap/renderer/heatmap-options-renderer/index.js start line: 55 end line: 61 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4887 unit: getNodePosition() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/binary-tree-graphics.js start line: 198 end line: 204 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4888 unit: updatePosition() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 175 end line: 181 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4889 unit: onDragStart() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 135 end line: 141 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4890 unit: onDragEnd() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 169 end line: 175 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4891 unit: getGlobalDimension() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 191 end line: 197 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4892 unit: getGlobalPosition() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 199 end line: 205 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4893 unit: function splitWord() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/labels-formatter.js start line: 3 end line: 9 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4894 unit: get width() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/axis-label.js start line: 244 end line: 250 size: 7 LOC McCabe index: 5 number of parameters: 0 id: 4895 unit: test() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/axis-label.js start line: 380 end line: 386 size: 7 LOC McCabe index: 4 number of parameters: 1 id: 4896 unit: onClick() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 334 end line: 340 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4897 unit: onScroll() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 351 end line: 357 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4898 unit: updateTicksVisibility() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 433 end line: 439 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4899 unit: getViewportBounds() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 525 end line: 531 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4900 unit: getViewportBounds() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 572 end line: 578 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4901 unit: set enabled() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 155 end line: 161 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4902 unit: set hovered() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 167 end line: 173 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4903 unit: constructor() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 14 end line: 24 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4904 unit: reset() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 218 end line: 224 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4905 unit: getSessionFlags() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/webgl-graphics.js start line: 134 end line: 140 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4906 unit: build() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/index.js start line: 128 end line: 134 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4907 unit: constructor() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry-collection.js start line: 10 end line: 20 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4908 unit: clear() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry-collection.js start line: 85 end line: 91 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4909 unit: build() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry-collection.js start line: 99 end line: 105 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4910 unit: destroy() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry-collection.js start line: 107 end line: 113 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4911 unit: destroy() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 124 end line: 130 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4912 unit: testDataItem() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 417 end line: 423 size: 7 LOC McCabe index: 5 number of parameters: 1 id: 4913 unit: getScalePosition() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 271 end line: 277 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4914 unit: getDevicePosition() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 279 end line: 285 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4915 unit: checkViewportChanged() file: client/client/modules/render/heatmap/viewport/index.js start line: 218 end line: 224 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4916 unit: onViewportChanged() file: client/client/modules/render/heatmap/viewport/index.js start line: 226 end line: 232 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4917 unit: fitAxis() file: client/client/modules/render/heatmap/viewport/index.js start line: 241 end line: 247 size: 7 LOC McCabe index: 4 number of parameters: 3 id: 4918 unit: getFutureScale() file: client/client/modules/render/heatmap/viewport/heatmap-scale.js start line: 108 end line: 114 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4919 unit: parse() file: client/client/modules/render/heatmap/navigation/types.js start line: 26 end line: 32 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4920 unit: start() file: client/client/modules/render/heatmap/animation/animation.js start line: 52 end line: 58 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4921 unit: ensureContainerSize() file: client/client/modules/render/heatmap/index.js start line: 54 end line: 60 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4922 unit: resizeRenderer() file: client/client/modules/render/heatmap/index.js start line: 154 end line: 160 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4923 unit: get columns() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 277 end line: 283 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4924 unit: get rows() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 289 end line: 295 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4925 unit: export function pointFitsSection() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 193 end line: 199 size: 7 LOC McCabe index: 2 number of parameters: 3 id: 4926 unit: export function orthogonalVector() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 230 end line: 236 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4927 unit: b: rotate() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 339 end line: 352 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 4928 unit: getData() file: client/client/modules/render/heatmap/utilities/trie.js start line: 85 end line: 91 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4929 unit: getHeatMapItem() file: client/client/modules/render/heatmap/utilities/heatmap-trie.js start line: 261 end line: 267 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 4930 unit: removeEventListener() file: client/client/modules/render/heatmap/utilities/heatmap-event-dispatcher.js start line: 16 end line: 22 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 4931 unit: serialize() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 89 end line: 95 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4932 unit: set dendrogram() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 117 end line: 123 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4933 unit: set annotations() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 133 end line: 139 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4934 unit: function readStates() file: client/client/modules/render/heatmap/heatmap-view-options/manager.js start line: 3 end line: 9 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4935 unit: render() file: client/client/modules/render/heatmap/heatmap-view.js start line: 582 end line: 588 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4936 unit: set include() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 20 end line: 26 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 4937 unit: checkGradientRegions() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 299 end line: 305 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4938 unit: set dataType() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 317 end line: 323 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4939 unit: get singleValueModeAvailable() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 325 end line: 331 size: 7 LOC McCabe index: 3 number of parameters: 0 id: 4940 unit: set from() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 167 end line: 173 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4941 unit: set to() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 179 end line: 185 size: 7 LOC McCabe index: 2 number of parameters: 1 id: 4942 unit: getTotalHeight() file: client/client/modules/render/variant-render/renderers/zones/variant-zones-manager.js start line: 21 end line: 27 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4943 unit: render() file: client/client/modules/render/variant-render/renderers/base-renderer.js start line: 65 end line: 71 size: 7 LOC McCabe index: 4 number of parameters: 2 id: 4944 unit: pre() file: client/client/modules/uiGridGroupColumns/ui-grid-group-columns.js start line: 156 end line: 162 size: 7 LOC McCabe index: 1 number of parameters: 4 id: 4945 unit: export function isItemValue() file: export-templates/target-identification/src/model/utilities.ts start line: 15 end line: 21 size: 7 LOC McCabe index: 5 number of parameters: 1 id: 4946 unit: export function useTotalCountDrugs() file: export-templates/target-identification/src/model/main.ts start line: 39 end line: 45 size: 7 LOC McCabe index: 1 number of parameters: 0 id: 4947 unit: export function useSequencesGenes() file: export-templates/target-identification/src/model/main.ts start line: 84 end line: 90 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 4948 unit: export function useSortedData() file: export-templates/target-identification/src/model/sorted-data.ts start line: 66 end line: 72 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 4949 unit: function init() file: export-templates/target-identification/src/model/paged-data.ts start line: 8 end line: 14 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 4950 unit: exports.runCommand = function() file: desktop/src/ScriptUtils.js start line: 19 end line: 33 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 4951 unit: private void checkArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/Application.java start line: 334 end line: 339 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 4952 unit: public BlastDatabaseVO() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BlastDatabaseVO.java start line: 44 end line: 49 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 4953 unit: public NgbUser() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/NgbUser.java start line: 50 end line: 55 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 4954 unit: private void getItemFormat() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/NgbUser.java start line: 72 end line: 77 size: 6 LOC McCabe index: 2 number of parameters: 2 id: 4955 unit: public static BiologicalDataItemResourceType getById() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItemResourceType.java start line: 69 end line: 75 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 4956 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/simple/VersionCommandHandler.java start line: 22 end line: 27 size: 6 LOC McCabe index: 2 number of parameters: 2 id: 4957 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/simple/VersionCommandHandler.java start line: 30 end line: 35 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 4958 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/simple/SetPropertyCommandHandler.java start line: 50 end line: 55 size: 6 LOC McCabe index: 3 number of parameters: 2 id: 4959 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/species/SpeciesRemovingHandler.java start line: 69 end line: 74 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 4960 unit: Map getAdditionalFormats() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 381 end line: 386 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 4961 unit: static file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/GrantPermissionHandler.java start line: 74 end line: 79 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 4962 unit: private Integer mapPermissionToMask() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/GrantPermissionHandler.java start line: 248 end line: 253 size: 6 LOC McCabe index: 2 number of parameters: 2 id: 4963 unit: private String findValue() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandManager.java start line: 180 end line: 185 size: 6 LOC McCabe index: 2 number of parameters: 3 id: 4964 unit: def get_color_map() file: server/catgenome/src/main/resources/scripts/run_tmap.py start line: 0 end line: 0 size: 6 LOC McCabe index: 2 number of parameters: 3 id: 4965 unit: protected void configure() file: server/catgenome/src/main/java/com/epam/catgenome/app/NoSecurityConfiguration.java start line: 46 end line: 52 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 4966 unit: protected RequestMatcher getFullRequestMatcher() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 215 end line: 220 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 4967 unit: public SAMLAuthenticationProvider samlAuthenticationProvider() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 259 end line: 264 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 4968 unit: public WebSSOProfileConsumer webSSOprofileConsumer() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 297 end line: 302 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 4969 unit: public WebSSOProfileOptions defaultWebSSOProfileOptions() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 349 end line: 354 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 4970 unit: public ExtendedMetadata extendedMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 367 end line: 372 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 4971 unit: public CustomAwareAuthenticationSuccessHandler successRedirectHandler() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 425 end line: 430 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 4972 unit: public SimpleUrlAuthenticationFailureHandler authenticationFailureHandler() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 434 end line: 439 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 4973 unit: public SecurityContextLogoutHandler logoutHandler() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 476 end line: 481 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 4974 unit: private ArtifactResolutionProfile artifactResolutionProfile() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 502 end line: 507 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 4975 unit: static void validateResponseStatus() file: server/catgenome/src/main/java/com/epam/catgenome/util/QueryUtils.java start line: 54 end line: 59 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 4976 unit: public static void reverseRegex() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/RegexReverser.java start line: 40 end line: 45 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 4977 unit: public AzureBlobClient() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 126 end line: 131 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 4978 unit: public InfoFieldParser() file: server/catgenome/src/main/java/com/epam/catgenome/util/InfoFieldParser.java start line: 38 end line: 43 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 4979 unit: public static String removeFileExtension() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 129 end line: 134 size: 6 LOC McCabe index: 4 number of parameters: 2 id: 4980 unit: public static CloseableIterator query() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 320 end line: 325 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 4981 unit: public static void debugLogTime() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 369 end line: 374 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 4982 unit: public static String processUrl() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 437 end line: 442 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 4983 unit: public void add() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 81 end line: 87 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 4984 unit: public boolean addAll() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 229 end line: 234 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 4985 unit: public static synchronized S3Client getInstance() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 88 end line: 93 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 4986 unit: public static boolean isTabix() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 218 end line: 223 size: 6 LOC McCabe index: 3 number of parameters: 2 id: 4987 unit: public TabixFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixFeatureReader.java start line: 62 end line: 67 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 4988 unit: public static AbstractFeatureReader getFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractEnhancedFeatureReader.java start line: 72 end line: 77 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 4989 unit: public boolean isTabix() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractEnhancedFeatureReader.java start line: 166 end line: 171 size: 6 LOC McCabe index: 3 number of parameters: 2 id: 4990 unit: public TribbleIndexedFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 163 end line: 168 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 4991 unit: public final void writeInt() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 138 end line: 144 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 4992 unit: public final void writeBytes() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 200 end line: 205 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 4993 unit: public FeatureInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureInputStream.java start line: 43 end line: 48 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 4994 unit: public JwtTokenGenerator() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtTokenGenerator.java start line: 69 end line: 74 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 4995 unit: public UserContext() file: server/catgenome/src/main/java/com/epam/catgenome/security/UserContext.java start line: 74 end line: 79 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 4996 unit: public boolean isGeneRegisteredForReference() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 334 end line: 339 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 4997 unit: public boolean isLineageTreeRegisteredForReference() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 347 end line: 352 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 4998 unit: public Map getObjectIdentities() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 105 end line: 110 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 4999 unit: public boolean sessionIsReadable() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 153 end line: 158 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5000 unit: public boolean hasPermissionOnTargetGenes() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 230 end line: 235 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5001 unit: public AclSecuredEntry deleteAllPermissions() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 143 end line: 149 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5002 unit: private AclSecuredEntry convertAclToEntry() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 308 end line: 314 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5003 unit: public static void validateMask() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 22 end line: 27 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5004 unit: public OptionalSAMLLogoutFilter() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/OptionalSAMLLogoutFilter.java start line: 83 end line: 88 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5005 unit: public OptionalSAMLLogoutFilter() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/OptionalSAMLLogoutFilter.java start line: 97 end line: 102 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5006 unit: public void afterPropertiesSet() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/OptionalSAMLLogoutFilter.java start line: 237 end line: 242 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5007 unit: protected void populateGenericContext() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLContextProviderCustomSignKey.java start line: 85 end line: 91 size: 6 LOC McCabe index: 2 number of parameters: 3 id: 5008 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 134 end line: 139 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5009 unit: public String getResponse() file: server/catgenome/src/main/java/com/epam/catgenome/entity/llm/CustomChatResponse.java start line: 47 end line: 52 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5010 unit: public NgbUser() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/NgbUser.java start line: 57 end line: 62 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5011 unit: public static TrackDirectionType getById() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/TrackDirectionType.java start line: 65 end line: 70 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5012 unit: public SpliceJunctionsEntity() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/SpliceJunctionsEntity.java start line: 40 end line: 45 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5013 unit: public ProteinSequenceInfo() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceInfo.java start line: 45 end line: 50 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5014 unit: private void addAdditionalFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 295 end line: 300 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5015 unit: public boolean filterEmpty() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 108 end line: 113 size: 6 LOC McCabe index: 11 number of parameters: 0 id: 5016 unit: private void addFailedFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 177 end line: 182 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5017 unit: private void addExonFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 211 end line: 216 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5018 unit: public Variation() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/Variation.java start line: 68 end line: 74 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5019 unit: public static byte nibCodeToByteNucleotide() file: server/catgenome/src/main/java/com/epam/catgenome/entity/nucleotid/NibByteFormat.java start line: 192 end line: 197 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5020 unit: public static BiologicalDataItemResourceType getById() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItemResourceType.java start line: 107 end line: 112 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5021 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/entity/FeatureFile.java start line: 76 end line: 82 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5022 unit: public static BiologicalDataItemFormat getById() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItemFormat.java start line: 191 end line: 197 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5023 unit: public boolean overlap() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/motif/Region.java start line: 39 end line: 44 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5024 unit: public void createMafFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/maf/MafFileDao.java start line: 86 end line: 92 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5025 unit: public void createBedFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bed/BedFileDao.java start line: 68 end line: 74 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5026 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/activity/ActivityDao.java start line: 55 end line: 60 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5027 unit: public void insertUserRoles() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 160 end line: 166 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5028 unit: public List findUsers() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 184 end line: 189 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5029 unit: private void processBatchQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 240 end line: 245 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5030 unit: private MapSqlParameterSource buildUserGroupParameter() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 270 end line: 275 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5031 unit: private static MapSqlParameterSource getUserRoleParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 365 end line: 370 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5032 unit: public List loadAllRoles() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 112 end line: 117 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5033 unit: private static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 174 end line: 179 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5034 unit: public List loadFilesByNameStrict() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 221 end line: 226 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5035 unit: public List loadFilesByNameCaseInsensitive() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 229 end line: 234 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5036 unit: public List loadFilesByName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 253 end line: 258 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5037 unit: public void createGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/gene/GeneFileDao.java start line: 75 end line: 81 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5038 unit: public List loadGeneFiles() file: server/catgenome/src/main/java/com/epam/catgenome/dao/gene/GeneFileDao.java start line: 121 end line: 126 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5039 unit: public void updateOwner() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 586 end line: 592 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5040 unit: public void createVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/vcf/VcfFileDao.java start line: 82 end line: 88 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5041 unit: public void saveTask() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 91 end line: 96 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5042 unit: public PagingSearcher() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/searcher/PagingSearcher.java start line: 52 end line: 57 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5043 unit: public NextPageSearcher() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/searcher/NextPageSearcher.java start line: 52 end line: 57 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5044 unit: private void setBookmarks() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 890 end line: 895 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5045 unit: public void createSegFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 86 end line: 92 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5046 unit: public void updateHeatmapContent() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 134 end line: 140 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5047 unit: public InputStream loadHeatmapContent() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 210 end line: 215 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5048 unit: public InputStream loadCellAnnotation() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 217 end line: 222 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5049 unit: public InputStream loadHeatmapRowTree() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 224 end line: 229 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5050 unit: public InputStream loadHeatmapColumnTree() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 231 end line: 236 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5051 unit: private String convertEntitiesToString() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 151 end line: 156 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5052 unit: public PdbFile save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pdb/PdbFileDao.java start line: 76 end line: 81 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5053 unit: public void updateReferenceGeneFileId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 193 end line: 199 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5054 unit: public void updateSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 202 end line: 208 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5055 unit: public void updateProteinSeqFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 211 end line: 217 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5056 unit: public Reference loadReferenceGenome() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 235 end line: 240 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5057 unit: public Reference loadReferenceGenomeByBioItemId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 248 end line: 253 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5058 unit: public Reference loadReferenceGenomeByName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 255 end line: 260 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5059 unit: public Chromosome loadChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 312 end line: 317 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5060 unit: public List searchBookmarks() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 98 end line: 104 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5061 unit: public Optional load() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 77 end line: 82 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5062 unit: public static List convertTo() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/ProjectConverter.java start line: 96 end line: 102 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5063 unit: public List getPubmedReferences() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 151 end line: 157 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5064 unit: public List getBiosystemsReferences() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 163 end line: 168 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5065 unit: public Result deletePermissionsForUser() file: server/catgenome/src/main/java/com/epam/catgenome/controller/security/PermissionController.java start line: 72 end line: 77 size: 6 LOC McCabe index: 1 number of parameters: 5 id: 5066 unit: public Result deleteCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/controller/bam/BamCoverageController.java start line: 95 end line: 100 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5067 unit: public Result addProjectItem() file: server/catgenome/src/main/java/com/epam/catgenome/controller/project/ProjectController.java start line: 213 end line: 218 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5068 unit: public Result removeProjectItem() file: server/catgenome/src/main/java/com/epam/catgenome/controller/project/ProjectController.java start line: 229 end line: 234 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5069 unit: public Result upsertProjectDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/project/ProjectController.java start line: 516 end line: 521 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5070 unit: public Result loadFieldValues() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vcf/VcfController.java start line: 270 end line: 275 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5071 unit: public Result fetchEnsemblData() file: server/catgenome/src/main/java/com/epam/catgenome/controller/externaldb/ExternalDBController.java start line: 164 end line: 171 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5072 unit: public Result fetchNCBIGene() file: server/catgenome/src/main/java/com/epam/catgenome/controller/externaldb/ExternalDBController.java start line: 247 end line: 254 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5073 unit: public Result fetchNCBITaxonomyInfo() file: server/catgenome/src/main/java/com/epam/catgenome/controller/externaldb/ExternalDBController.java start line: 320 end line: 326 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5074 unit: public Result importHomologData() file: server/catgenome/src/main/java/com/epam/catgenome/controller/externaldb/HomologController.java start line: 87 end line: 92 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5075 unit: public AbstractSecuredEntity changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafFileManager.java start line: 91 end line: 96 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5076 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/ValidationStatus.java start line: 41 end line: 46 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5077 unit: private ExecutorService createExecutorService() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TaskExecutorService.java start line: 144 end line: 149 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5078 unit: private String checkFileNonEmpty() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 462 end line: 467 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5079 unit: public AbstractSecuredEntity changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedFileManager.java start line: 143 end line: 148 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5080 unit: public NggbMultiFormatBedCodec() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedCodec.java start line: 58 end line: 63 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5081 unit: private void parseAndSetName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 243 end line: 248 size: 6 LOC McCabe index: 2 number of parameters: 3 id: 5082 unit: public String getChatResponse() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/OpenAIChatGPT35.java start line: 80 end line: 85 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5083 unit: public String getChatResponse() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/LLMService.java start line: 91 end line: 96 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5084 unit: public String getArticleSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/LLMSecurityService.java start line: 44 end line: 49 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5085 unit: public String getChatResponse() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/LLMSecurityService.java start line: 52 end line: 57 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5086 unit: public String getPatentSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/LLMSecurityService.java start line: 60 end line: 65 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5087 unit: public String getChatResponse() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/OpenAIChatGPT40.java start line: 56 end line: 61 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5088 unit: public String getChatResponse() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/CustomLLMApiClient.java start line: 55 end line: 60 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5089 unit: default List adjustLastMessage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/LLMHandler.java start line: 48 end line: 53 size: 6 LOC McCabe index: 2 number of parameters: 2 id: 5090 unit: default List adjustFirstMessage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/LLMHandler.java start line: 55 end line: 60 size: 6 LOC McCabe index: 2 number of parameters: 2 id: 5091 unit: public Activity save() file: server/catgenome/src/main/java/com/epam/catgenome/manager/activity/ActivityService.java start line: 51 end line: 56 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5092 unit: List apply() file: server/catgenome/src/main/java/com/epam/catgenome/manager/TrackHelper.java start line: 326 end line: 332 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5093 unit: public BedGraphFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphFeature.java start line: 47 end line: 52 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5094 unit: public BedGraphFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphFeature.java start line: 54 end line: 59 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5095 unit: public WigFile unregisterWigFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/FacadeWigManager.java start line: 191 end line: 196 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5096 unit: public Track getWigTrack() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/FacadeWigManager.java start line: 204 end line: 209 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5097 unit: abstract Track getWigFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/AbstractWigProcessor.java start line: 66 end line: 74 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5098 unit: public AbstractSecuredEntity changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigFileManager.java start line: 131 end line: 136 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5099 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageManager.java start line: 370 end line: 375 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5100 unit: public StandardSAMRecordSifter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/StandardSAMRecordSifter.java start line: 75 end line: 82 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5101 unit: public AbstractSecuredEntity changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamFileManager.java start line: 121 end line: 126 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5102 unit: public List find() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BlatSearchManager.java start line: 67 end line: 72 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5103 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 130 end line: 135 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5104 unit: public BamTrackEmitter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamTrackEmitter.java start line: 60 end line: 66 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5105 unit: private void write() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamTrackEmitter.java start line: 128 end line: 134 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5106 unit: public BamFile unregisterBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamManager.java start line: 155 end line: 160 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5107 unit: private boolean isGeneOnReverseStrand() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceManager.java start line: 272 end line: 277 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5108 unit: public List findGroups() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 210 end line: 215 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5109 unit: public Role createRole() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 66 end line: 71 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5110 unit: private String getPrettyName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 140 end line: 145 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5111 unit: public List getDefaultRolesIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 147 end line: 152 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5112 unit: public GeneIndexEntry next() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GeneIndexIterator.java start line: 73 end line: 79 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5113 unit: public AbstractSecuredEntity changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneFileManager.java start line: 159 end line: 164 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5114 unit: public static String getTranscriptId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 242 end line: 248 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5115 unit: public static String getTranscriptId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 256 end line: 262 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5116 unit: public Track loadGenesFromIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneTrackManager.java start line: 129 end line: 135 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5117 unit: public String getGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 117 end line: 123 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5118 unit: private int parseIntOrDot() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 156 end line: 162 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5119 unit: private float parseFloatOrDot() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 164 end line: 170 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5120 unit: public static GffType forExt() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffCodec.java start line: 90 end line: 96 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5121 unit: private Activity setCommonFields() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneActivityService.java start line: 122 end line: 127 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5122 unit: public Set getTopLevelFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 61 end line: 66 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5123 unit: private void removeTopLevelFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 208 end line: 214 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5124 unit: private void addFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 297 end line: 302 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5125 unit: public void addFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 120 end line: 125 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5126 unit: public void addDirective() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 153 end line: 158 size: 6 LOC McCabe index: 2 number of parameters: 2 id: 5127 unit: public void addDirective() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 165 end line: 170 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5128 unit: private void setDictionarySequences() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 277 end line: 282 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5129 unit: public DimStructure getPBDItemsFromBD() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 917 end line: 922 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5130 unit: private Block createExon() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 1085 end line: 1090 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5131 unit: private Block mergeExons() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 1092 end line: 1098 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5132 unit: public Project load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 191 end line: 196 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5133 unit: public AbstractSecuredEntity changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 200 end line: 205 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5134 unit: private void deleteNestedProjects() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 494 end line: 499 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5135 unit: private String createPathFromUrlString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/DownloadFileManager.java start line: 160 end line: 165 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5136 unit: private static void setNoVariationOrganism() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 504 end line: 509 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5137 unit: private void indexVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 737 end line: 742 size: 6 LOC McCabe index: 2 number of parameters: 4 id: 5138 unit: private Map scourFilterList() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 917 end line: 922 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5139 unit: public AbstractSecuredEntity changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfFileManager.java start line: 106 end line: 111 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5140 unit: public AbstractSecuredEntity changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bucket/BucketManager.java start line: 86 end line: 91 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5141 unit: public void writeLuceneIndexForFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 578 end line: 583 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5142 unit: public void writeLuceneIndexForFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 585 end line: 590 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5143 unit: public void addDoc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIEnsemblIdsManager.java start line: 114 end line: 119 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5144 unit: public GeneId entryFromDoc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIEnsemblIdsManager.java start line: 121 end line: 126 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5145 unit: public void init() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 100 end line: 105 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5146 unit: public Pair getPubmedHistoryQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneManager.java start line: 144 end line: 149 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5147 unit: public List getSegment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/PdbBlock.java start line: 52 end line: 57 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5148 unit: public List getAlignment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/Dasalignment.java start line: 50 end line: 55 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5149 unit: public List getBlock() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/Alignment.java start line: 51 end line: 56 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5150 unit: public List getRecord() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/Dataset.java start line: 50 end line: 55 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5151 unit: public List getStrains() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 145 end line: 150 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5152 unit: public List getCitation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 198 end line: 203 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5153 unit: public List getFxnSet() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 98 end line: 103 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5154 unit: public List getMapLoc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 91 end line: 96 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5155 unit: public List getRs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 119 end line: 124 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5156 unit: public List getBaseURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 220 end line: 225 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5157 unit: public List getMapLoc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/PrimarySequence.java start line: 77 end line: 82 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5158 unit: public List getSs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 151 end line: 156 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5159 unit: public List getAssembly() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 158 end line: 163 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5160 unit: public List getPrimarySequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 165 end line: 170 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5161 unit: public List getRsStruct() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 171 end line: 176 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5162 unit: public List getRsLinkout() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 177 end line: 182 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5163 unit: public List getMergeHistory() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 183 end line: 188 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5164 unit: public List getHgvs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 190 end line: 195 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5165 unit: public List getAlleleOrigin() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 197 end line: 202 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5166 unit: public List getPhenotype() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 204 end line: 209 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5167 unit: public List getBioSource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 211 end line: 216 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5168 unit: public List getFrequency() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 218 end line: 223 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5169 unit: public List getGenome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 357 end line: 362 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5170 unit: public List getOrigin() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 364 end line: 369 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5171 unit: public List getClinicalSignificance() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 617 end line: 622 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5172 unit: public List getOtherPopBatchId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 795 end line: 800 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5173 unit: public List getTwoHit2AlleleBatchId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 802 end line: 807 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5174 unit: public List getFrequencyClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 809 end line: 814 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5175 unit: public List getHapMapPhase() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 816 end line: 821 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5176 unit: public List getTGPPhase() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 823 end line: 828 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5177 unit: public List getSuspectEvidence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 830 end line: 835 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5178 unit: public List getComponent() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 84 end line: 89 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5179 unit: private static StructureRequest buildSearchSummaryRequest() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbEntriesManager.java start line: 386 end line: 391 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5180 unit: private List loadTaskOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 256 end line: 261 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5181 unit: private List loadTaskExclOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 263 end line: 268 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5182 unit: private List mapTaxonomyIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 276 end line: 281 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5183 unit: public Query getByTermQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 250 end line: 255 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5184 unit: private String readPathway() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 325 end line: 330 size: 6 LOC McCabe index: 2 number of parameters: 2 id: 5185 unit: public AbstractSecuredEntity changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegFileManager.java start line: 136 end line: 141 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5186 unit: public NggbSegFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/NggbSegFeature.java start line: 40 end line: 45 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5187 unit: public String getReferenceDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 384 end line: 389 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5188 unit: public void makeVcfDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 416 end line: 422 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5189 unit: public String getGeneDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 448 end line: 453 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5190 unit: public void makeBedDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 461 end line: 467 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5191 unit: public void makeSegDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 475 end line: 481 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5192 unit: public void makeMafDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 489 end line: 494 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5193 unit: private void makeMafTempDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 496 end line: 501 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5194 unit: public void deleteMafTempDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 508 end line: 513 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5195 unit: public void makeWigDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 521 end line: 526 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5196 unit: public SimpleFSDirectory createIndexForProject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 949 end line: 956 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5197 unit: public boolean indexForProjectExists() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1003 end line: 1009 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5198 unit: public void makeGcIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1477 end line: 1482 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5199 unit: public AbstractFeatureReader makeBedReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1606 end line: 1611 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5200 unit: public void updateLabelAnnotation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapSecurityService.java start line: 75 end line: 80 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5201 unit: private String getSeparator() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 404 end line: 409 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5202 unit: public Map readGenbankFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/GenbankManager.java start line: 86 end line: 91 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5203 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/GenbankUtils.java start line: 49 end line: 54 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5204 unit: public ReferenceSequence nextSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/ChromosomeReferenceSequence.java start line: 89 end line: 94 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5205 unit: private boolean isGCNibCode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 436 end line: 441 size: 6 LOC McCabe index: 4 number of parameters: 1 id: 5206 unit: private boolean isGCCharCode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataWriter.java start line: 164 end line: 169 size: 6 LOC McCabe index: 4 number of parameters: 1 id: 5207 unit: private List getGCFromGCFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 563 end line: 569 size: 6 LOC McCabe index: 1 number of parameters: 5 id: 5208 unit: private List getGCFromNibFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 578 end line: 584 size: 6 LOC McCabe index: 1 number of parameters: 5 id: 5209 unit: public Reference getOnlyReference() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 344 end line: 349 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5210 unit: public Reference updateReferenceGeneFileId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 357 end line: 363 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5211 unit: public AbstractSecuredEntity changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 502 end line: 507 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5212 unit: public AbstractSecuredEntity changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/BookmarkManager.java start line: 165 end line: 170 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5213 unit: public NGBSession create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/session/NGBSessionManager.java start line: 56 end line: 61 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5214 unit: getBlatSearchResults() file: client/client/dataServices/bam/bam-data-service.js start line: 293 end line: 298 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5215 unit: set token() file: client/client/dataServices/data-service.js start line: 30 end line: 35 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5216 unit: getSettingsCopy() file: client/client/dataServices/local/local-data-service.js start line: 81 end line: 86 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5217 unit: getProject() file: client/client/dataServices/project/project-data-service.js start line: 49 end line: 54 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5218 unit: getProjectIdDescription() file: client/client/dataServices/project/project-data-service.js start line: 56 end line: 61 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5219 unit: function generateRandomItems() file: client/client/dataServices/heatmap/heatmap-data-service.js start line: 13 end line: 18 size: 6 LOC McCabe index: 3 number of parameters: 3 id: 5220 unit: emitReady() file: client/client/app/app.controller.js start line: 199 end line: 204 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5221 unit: link : function() file: client/client/app/shared/directives/autofocus.directive.js start line: 6 end line: 14 size: 6 LOC McCabe index: 2 number of parameters: 2 id: 5222 unit: set featureCoords() file: client/client/app/shared/targetContext/index.js start line: 60 end line: 65 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5223 unit: get routeInfo() file: client/client/app/shared/targetContext/index.js start line: 74 end line: 79 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5224 unit: get targetModelType() file: client/client/app/shared/targetContext/index.js start line: 126 end line: 131 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5225 unit: setCurrentTab() file: client/client/app/shared/targetContext/index.js start line: 148 end line: 153 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5226 unit: setCurrentDisease() file: client/client/app/shared/targetContext/index.js start line: 172 end line: 177 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5227 unit: set embedded() file: client/client/app/shared/appearanceContext/index.js start line: 10 end line: 15 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5228 unit: set preventCloseLastTrack() file: client/client/app/shared/appearanceContext/index.js start line: 21 end line: 26 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5229 unit: set closeTracks() file: client/client/app/shared/appearanceContext/index.js start line: 45 end line: 50 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5230 unit: set fitTracks() file: client/client/app/shared/appearanceContext/index.js start line: 56 end line: 61 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5231 unit: set organizeTracks() file: client/client/app/shared/appearanceContext/index.js start line: 67 end line: 72 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5232 unit: set genomeAnnotations() file: client/client/app/shared/appearanceContext/index.js start line: 78 end line: 83 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5233 unit: set projectInfo() file: client/client/app/shared/appearanceContext/index.js start line: 89 end line: 94 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5234 unit: set tracksSelection() file: client/client/app/shared/appearanceContext/index.js start line: 100 end line: 105 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5235 unit: set close() file: client/client/app/shared/appearanceContext/index.js start line: 111 end line: 116 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5236 unit: set maximise() file: client/client/app/shared/appearanceContext/index.js start line: 122 end line: 127 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5237 unit: set vcfColumns() file: client/client/app/shared/appearanceContext/index.js start line: 133 end line: 138 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5238 unit: set vcfDownload() file: client/client/app/shared/appearanceContext/index.js start line: 144 end line: 149 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5239 unit: set genesColumns() file: client/client/app/shared/appearanceContext/index.js start line: 155 end line: 160 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5240 unit: set genesDownload() file: client/client/app/shared/appearanceContext/index.js start line: 166 end line: 171 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5241 unit: set coverageActions() file: client/client/app/shared/appearanceContext/index.js start line: 177 end line: 182 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5242 unit: setTracksOfTypeAreSelected() file: client/client/app/shared/selectionContext/index.js start line: 105 end line: 110 size: 6 LOC McCabe index: 2 number of parameters: 3 id: 5243 unit: getTrackIsSelected() file: client/client/app/shared/selectionContext/index.js start line: 132 end line: 137 size: 6 LOC McCabe index: 2 number of parameters: 2 id: 5244 unit: getLastEvents() file: client/client/app/shared/dispatcher/dispatcher.js start line: 68 end line: 73 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5245 unit: set layout() file: client/client/app/shared/dispatcher/protocol/state.js start line: 69 end line: 74 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5246 unit: set tracksState() file: client/client/app/shared/dispatcher/protocol/state.js start line: 82 end line: 87 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5247 unit: function intToRGB() file: client/client/app/shared/utils/calculateColor.js start line: 13 end line: 19 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5248 unit: constructor() file: client/client/app/shared/eventHotkeys/index.js start line: 14 end line: 22 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5249 unit: update() file: client/client/app/shared/eventHotkeys/index.js start line: 63 end line: 68 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5250 unit: $timeout() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.directive.js start line: 35 end line: 40 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5251 unit: addError() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 74 end line: 79 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5252 unit: addError() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 124 end line: 129 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5253 unit: createUser() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 95 end line: 100 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5254 unit: getRolesAndGroups() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.service.js start line: 23 end line: 28 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5255 unit: getPathwaysState() file: client/client/app/shared/components/ngbMainToolbar/ngbBookmark/ngbBookmarkSaveDlg.controller.js start line: 69 end line: 74 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5256 unit: async didClickOnPath() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 202 end line: 207 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5257 unit: $scope.getModelName = function() file: client/client/app/shared/components/ngbLLM/ngbLLM.dialog.run.js start line: 19 end line: 24 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5258 unit: get modelType() file: client/client/app/shared/components/ngbLLM/ngbLLM.controller.js start line: 42 end line: 47 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5259 unit: createBrowserItemWithPosition() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.service.js start line: 88 end line: 93 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5260 unit: export function setTitle() file: client/client/app/shared/components/ngbGoldenLayout/internal/goldenLayout.js start line: 139 end line: 145 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5261 unit: hideCloseIcon() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 119 end line: 124 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5262 unit: showCloseIcon() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 125 end line: 130 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5263 unit: blastSearchPanelRemoved() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 535 end line: 541 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5264 unit: const mapHintFn = function() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.search.results.js start line: 7 end line: 12 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5265 unit: discardEdit() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 318 end line: 323 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5266 unit: function createFilterFor() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 414 end line: 419 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5267 unit: function getChromosome() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/parse-coordinates.js start line: 14 end line: 19 size: 6 LOC McCabe index: 2 number of parameters: 2 id: 5268 unit: constructor() file: client/client/app/shared/components/ngbPagination/ngbPagination.controller.js start line: 10 end line: 15 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5269 unit: getEmptyAffectedGenes() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 412 end line: 417 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5270 unit: copyEmptyGene() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 772 end line: 777 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5271 unit: constructor() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantInfo/ngbVariantInfo.controller.js start line: 17 end line: 22 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5272 unit: constructor() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantInfo/ngbVariantInfo.service.js start line: 15 end line: 20 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5273 unit: constructor() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantDbSnp/ngbVariantDbSnp.controller.js start line: 18 end line: 23 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5274 unit: constructor() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantAnnotations/ngbVariantAnnotations.controller.js start line: 13 end line: 18 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5275 unit: constructor() file: client/client/app/shared/components/ngbTags/ngbTags.controller.js start line: 6 end line: 11 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5276 unit: get items() file: client/client/app/shared/components/ngbTags/ngbTags.controller.js start line: 17 end line: 22 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5277 unit: template: require() file: client/client/app/shared/components/ngbPanelErrorList/ngbPanelErrorList.component.js start line: 2 end line: 7 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5278 unit: set layout() file: client/client/app/shared/projectContext/index.js start line: 415 end line: 420 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5279 unit: get browserHomePageUrl() file: client/client/app/shared/projectContext/index.js start line: 662 end line: 667 size: 6 LOC McCabe index: 4 number of parameters: 0 id: 5280 unit: getTrackDefaultSettings() file: client/client/app/shared/projectContext/index.js start line: 840 end line: 845 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5281 unit: addLastLocalTrack() file: client/client/app/shared/projectContext/index.js start line: 1041 end line: 1046 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5282 unit: scheduleFilterVariants() file: client/client/app/shared/projectContext/index.js start line: 1317 end line: 1322 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5283 unit: getItemAtIndex() file: client/client/app/shared/filter/filterList/ngbFilterList.elements.js start line: 89 end line: 94 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5284 unit: set totalPages() file: client/client/app/shared/services/clientPaginationService.js start line: 30 end line: 35 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5285 unit: changePage() file: client/client/app/shared/services/clientPaginationService.js start line: 57 end line: 62 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5286 unit: const getTrackParents = function() file: client/client/app/shared/services/api.service.js start line: 561 end line: 566 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5287 unit: editNote() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 76 end line: 81 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5288 unit: tickFormat :() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantDensityDiagram/ngbVariantDensityDiagram.controller.js start line: 49 end line: 54 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5289 unit: async changeState() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 157 end line: 162 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5290 unit: async changeDiseaseState() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 190 end line: 195 size: 6 LOC McCabe index: 4 number of parameters: 1 id: 5291 unit: showDiseasesTab() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 205 end line: 210 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5292 unit: setIdentificationData() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 124 end line: 129 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5293 unit: exportExcel() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 192 end line: 197 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5294 unit: exportHtml() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 199 end line: 204 size: 6 LOC McCabe index: 4 number of parameters: 1 id: 5295 unit: exportExcelGeneId() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 206 end line: 211 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5296 unit: exportHtmlGeneId() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 213 end line: 218 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5297 unit: diseaseChanged() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 103 end line: 108 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5298 unit: async diseaseChanged() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 293 end line: 298 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5299 unit: set sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 53 end line: 58 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5300 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 35 end line: 40 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5301 unit: get source() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 74 end line: 79 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5302 unit: function getNodeLinks() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesGraph/make.graph.js start line: 2 end line: 7 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5303 unit: get results() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesGraph/ngbDiseasesGraph.controller.js start line: 38 end line: 43 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5304 unit: get ontology() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesGraph/ngbDiseasesGraph.controller.js start line: 45 end line: 50 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5305 unit: set highlightedTreeNode() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesGraph/ngbDiseasesGraph.controller.js start line: 56 end line: 61 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5306 unit: getCurrentOntology() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 105 end line: 110 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5307 unit: selectedGeneChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 142 end line: 147 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5308 unit: get results() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 45 end line: 50 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5309 unit: set scoreFilter() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 80 end line: 85 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5310 unit: export function circlePath() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/utilities.js start line: 1 end line: 6 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5311 unit: export function rectanglePath() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/utilities.js start line: 8 end line: 13 size: 6 LOC McCabe index: 3 number of parameters: 2 id: 5312 unit: get results() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesBubbles/ngbDiseasesBubbles.controller.js start line: 29 end line: 34 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5313 unit: getColumnName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 87 end line: 92 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5314 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 162 end line: 175 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5315 unit: async sourceChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 193 end line: 198 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5316 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureViewer/ngbStructureViewer.controller.js start line: 13 end line: 19 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5317 unit: async sourceChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 151 end line: 156 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5318 unit: function findReferenceById() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 46 end line: 51 size: 6 LOC McCabe index: 5 number of parameters: 2 id: 5319 unit: get references() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 148 end line: 153 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5320 unit: function findReferenceById() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 15 end line: 20 size: 6 LOC McCabe index: 5 number of parameters: 2 id: 5321 unit: get taxId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 94 end line: 99 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5322 unit: get references() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 101 end line: 106 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5323 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 92 end line: 97 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5324 unit: get searchDisabled() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 235 end line: 240 size: 6 LOC McCabe index: 7 number of parameters: 0 id: 5325 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 265 end line: 270 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5326 unit: async setDrugs() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 289 end line: 294 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5327 unit: get headerText() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 107 end line: 112 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5328 unit: onChangeSource() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.controller.js start line: 70 end line: 75 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5329 unit: async searchByProteinName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 163 end line: 168 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5330 unit: get searchDisabled() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 197 end line: 202 size: 6 LOC McCabe index: 7 number of parameters: 0 id: 5331 unit: async sourceChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 137 end line: 142 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5332 unit: getColumnName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 191 end line: 196 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5333 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 58 end line: 63 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5334 unit: resetData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 145 end line: 150 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5335 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbDiseaseContextMenu/ngbDiseaseContextMenu.controller.js start line: 7 end line: 12 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5336 unit: export default function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/md-chips-trim/index.js start line: 1 end line: 12 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5337 unit: get itemType() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetAddUserRoleDlg.controller.js start line: 34 end line: 39 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5338 unit: get selectedOwner() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 70 end line: 75 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5339 unit: get availableUsers() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 93 end line: 98 size: 6 LOC McCabe index: 6 number of parameters: 0 id: 5340 unit: get availableRoles() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 100 end line: 105 size: 6 LOC McCabe index: 6 number of parameters: 0 id: 5341 unit: static getRoleDisplayName() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 111 end line: 116 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5342 unit: getUserInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 269 end line: 274 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5343 unit: async rowClick() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 252 end line: 257 size: 6 LOC McCabe index: 3 number of parameters: 2 id: 5344 unit: $timeout() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/disable-wheel-handler/index.js start line: 5 end line: 10 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5345 unit: get targetModel() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 137 end line: 142 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5346 unit: targetGenesChanged() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 219 end line: 224 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5347 unit: setMetadataFields() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 966 end line: 971 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5348 unit: async uploadFile() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 220 end line: 225 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5349 unit: onBlur() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterInput/ngbTargetGenesFilterInput.controller.js start line: 27 end line: 32 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5350 unit: applyConfirmed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterInput/ngbTargetGenesFilterInput.controller.js start line: 63 end line: 68 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5351 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterRange/ngbTargetGenesFilterRange.controller.js start line: 12 end line: 18 size: 6 LOC McCabe index: 5 number of parameters: 4 id: 5352 unit: onBlur() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterRange/ngbTargetGenesFilterRange.controller.js start line: 20 end line: 25 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5353 unit: applyCanceled() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 200 end line: 205 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5354 unit: showOthers() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 759 end line: 764 size: 6 LOC McCabe index: 2 number of parameters: 3 id: 5355 unit: get currentColumnFields() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 112 end line: 117 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5356 unit: getColumnName() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 241 end line: 246 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5357 unit: getColumnField() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 248 end line: 253 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5358 unit: constructor() file: client/client/app/components/ngbVariantPanel/ngbVariantPanel.controller.js start line: 11 end line: 16 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5359 unit: get emptyResults() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 72 end line: 77 size: 6 LOC McCabe index: 6 number of parameters: 0 id: 5360 unit: bioDataItemId: getName() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 348 end line: 353 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5361 unit: get chromosomeType() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbMotifsResultsFilterList.controller.js start line: 20 end line: 25 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5362 unit: export default function() file: client/client/app/components/ngbMotifsPanel/motif.sequence.directive.js start line: 28 end line: 41 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5363 unit: ngModel.$validators.motifSequence = function() file: client/client/app/components/ngbMotifsPanel/motif.sequence.directive.js start line: 33 end line: 38 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5364 unit: scheduleFilterResults() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 312 end line: 317 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5365 unit: get orthoParaColumns() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.service.js start line: 58 end line: 63 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5366 unit: async searchOrthoPara() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.service.js start line: 73 end line: 78 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5367 unit: constructor() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResult.service.js start line: 19 end line: 24 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5368 unit: get orthoParaResultColumns() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResult.service.js start line: 26 end line: 31 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5369 unit: get homologeneColumns() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.service.js start line: 59 end line: 64 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5370 unit: async searchHomologene() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.service.js start line: 74 end line: 79 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5371 unit: get homologeneResultColumns() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResult.service.js start line: 31 end line: 36 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5372 unit: export default function run() file: client/client/app/components/ngbSashimiPlot/ngbSashimiPlot.run.js start line: 1 end line: 24 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5373 unit: getItemAtIndex() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbFilterList.elements.js start line: 154 end line: 159 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5374 unit: $onChanges() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbBookmarksFilterList.controller.js start line: 24 end line: 29 size: 6 LOC McCabe index: 4 number of parameters: 1 id: 5375 unit: setDisplayBookmarksFilter() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 70 end line: 75 size: 6 LOC McCabe index: 2 number of parameters: 2 id: 5376 unit: scheduleFilterBookmarks() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 207 end line: 212 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5377 unit: getCustomName() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 99 end line: 104 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5378 unit: initSortable() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 181 end line: 223 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5379 unit: export function sortDatasets() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 142 end line: 186 size: 6 LOC McCabe index: 3 number of parameters: 2 id: 5380 unit: export function expandToProject() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 335 end line: 340 size: 6 LOC McCabe index: 2 number of parameters: 2 id: 5381 unit: get itemType() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbAddUserRoleDlg.controller.js start line: 39 end line: 44 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5382 unit: get selectedOwner() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 68 end line: 73 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5383 unit: getUserInfo() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 91 end line: 96 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5384 unit: displayName: userInfo ? getUserDisplayNameString() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 93 end line: 99 size: 6 LOC McCabe index: 5 number of parameters: 1 id: 5385 unit: static getRoleDisplayName() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 153 end line: 158 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5386 unit: get searchLength() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 117 end line: 122 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5387 unit: getCustomName() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 134 end line: 139 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5388 unit: getTemplateNode() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 141 end line: 146 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5389 unit: nameIsChanged() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 195 end line: 200 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5390 unit: constructor() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 19 end line: 24 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5391 unit: async getDatasets() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 26 end line: 31 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5392 unit: deselectItem() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 215 end line: 220 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5393 unit: get genesTableColumns() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 186 end line: 191 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5394 unit: scheduleFilterGenes() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 560 end line: 565 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5395 unit: refreshScope() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 102 end line: 107 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5396 unit: constructor() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterInput/ngbGenesFilterInput.controller.js start line: 5 end line: 10 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5397 unit: getItemAtIndex() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbFilterList.elements.js start line: 142 end line: 147 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5398 unit: constructor() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterRange/ngbGenesFilterRange.controller.js start line: 10 end line: 15 size: 6 LOC McCabe index: 6 number of parameters: 1 id: 5399 unit: onGenesRestoreViewClick() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableColumn/ngbGenesTableColumn.controller.js start line: 44 end line: 49 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5400 unit: get referenceContainsAnnotations() file: client/client/app/components/ngbGenomeAnnotations/ngbGenomeAnnotations.controller.js start line: 53 end line: 58 size: 6 LOC McCabe index: 4 number of parameters: 0 id: 5401 unit: constructor() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsTableFilter.controller.js start line: 18 end line: 23 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5402 unit: constructor() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableDownload/ngbVariantsTableDownloadDlg.controller.js start line: 18 end line: 24 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5403 unit: constructor() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 82 end line: 87 size: 6 LOC McCabe index: 1 number of parameters: 5 id: 5404 unit: resetCurrentPages() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 170 end line: 175 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5405 unit: constructor() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterRange/ngbCoverageFilterRange.controller.js start line: 15 end line: 20 size: 6 LOC McCabe index: 4 number of parameters: 2 id: 5406 unit: ngModel.$validators.customMaxLength = function() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/customMaxLength.directive.js start line: 17 end line: 22 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5407 unit: onRepeat() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistory.controller.js start line: 234 end line: 239 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5408 unit: get blastHistoryColumns() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 279 end line: 284 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5409 unit: initEvents() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 71 end line: 76 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5410 unit: get blastSearchResultColumns() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.service.js start line: 19 end line: 24 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5411 unit: editSearch() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.controller.js start line: 54 end line: 59 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5412 unit: handle() file: client/client/app/components/ngbTracksView/ngbTrackActions/ngbTrackActions.controller.js start line: 10 end line: 15 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5413 unit: constructor() file: client/client/app/components/ngbTracksView/managers/ngbTracksView.camera.manager.js start line: 13 end line: 18 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 5414 unit: _getCanvasHeight() file: client/client/app/components/ngbTracksView/managers/ngbTracksView.camera.manager.js start line: 109 end line: 114 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5415 unit: get fontSize() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackFontSize/ngbTrackFontSize.controller.js start line: 35 end line: 40 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5416 unit: get instanceConstructor() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 37 end line: 42 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5417 unit: changeTrackVisibility() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 399 end line: 404 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5418 unit: get isResizable() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 498 end line: 503 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5419 unit: clearCloseMinifiedMenuTimeout() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 543 end line: 548 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5420 unit: template: require() file: client/client/app/components/ngbTracksView/ngbTracksSelectionMenu/ngbTracksSelectionMenu.component.js start line: 5 end line: 10 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5421 unit: export default function() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/fileModel.directive.js start line: 1 end line: 20 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5422 unit: get vcfFiles() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 134 end line: 139 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5423 unit: get vcfFileId() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 141 end line: 146 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5424 unit: get heatmapId() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 197 end line: 202 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5425 unit: $onChanges() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 242 end line: 247 size: 6 LOC McCabe index: 3 number of parameters: 1 id: 5426 unit: searchInTree() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.controller.js start line: 73 end line: 78 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5427 unit: getItemAtIndex() file: 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client/client/app/components/ngbBrowser/ngbBrowser.service.js start line: 3 end line: 8 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5441 unit: template: require() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbInfoRows/ngbInfoRows.component.js start line: 4 end line: 9 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5442 unit: get heatmapId() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 86 end line: 91 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5443 unit: get heatmapProjectId() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 98 end line: 103 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5444 unit: get heatmapReferenceId() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 105 end line: 110 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5445 unit: getImageData() file: 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index: 4 number of parameters: 1 id: 5456 unit: async _transformViewportMove() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 348 end line: 353 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5457 unit: async _transformViewportLocal() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 383 end line: 388 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5458 unit: get factor() file: client/client/modules/render/core/viewport/viewport.js start line: 126 end line: 131 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5459 unit: get actualBrushSize() file: client/client/modules/render/core/viewport/viewport.js start line: 133 end line: 138 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5460 unit: get convert() file: client/client/modules/render/core/viewport/viewport.js start line: 140 end line: 145 size: 6 LOC McCabe index: 3 number of parameters: 0 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file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 370 end line: 375 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 5478 unit: clear() file: client/client/modules/render/tracks/bam/internal/transformers/layoutReads.js start line: 82 end line: 87 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 5479 unit: pair: getPairOrientation() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 287 end line: 294 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 5480 unit: get trackIsResizable() file: client/client/modules/render/tracks/bam/index.js start line: 163 end line: 168 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5481 unit: invalidateCache() file: client/client/modules/render/tracks/bam/index.js start line: 462 end line: 467 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5482 unit: isScrollable() file: client/client/modules/render/tracks/bam/index.js start line: 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start line: 206 end line: 211 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5577 unit: function dataItemIsObject() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 32 end line: 37 size: 6 LOC McCabe index: 4 number of parameters: 1 id: 5578 unit: setDepth() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 168 end line: 173 size: 6 LOC McCabe index: 3 number of parameters: 0 id: 5579 unit: function getAngleBetweenVectors() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 129 end line: 134 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 5580 unit: a: movePoint() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 271 end line: 283 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 5581 unit: c: rotate() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 340 end line: 352 size: 6 LOC 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client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 376 end line: 382 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5599 unit: function getItems() file: export-templates/target-identification/src/common/select/index.tsx start line: 118 end line: 123 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 5600 unit: function() file: desktop/src/ScriptUtils.js start line: 25 end line: 29 size: 5 LOC McCabe index: 2 number of parameters: 3 id: 5601 unit: protected void addAnnotationType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/heatmap/HeatmapCellAnnotationHandler.java start line: 42 end line: 46 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5602 unit: protected HttpRequestBase getRequestFromURLByType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 204 end line: 208 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5603 unit: public CommandManager() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandManager.java start line: 83 end line: 87 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5604 unit: public CommandConfiguration() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandConfiguration.java start line: 35 end line: 39 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5605 unit: public CommandConfiguration() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandConfiguration.java start line: 41 end line: 45 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5606 unit: public PermissionEvaluator permissionEvaluator() file: server/catgenome/src/main/java/com/epam/catgenome/app/AclSecurityConfiguration.java start line: 115 end line: 119 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5607 unit: public EhCacheManagerFactoryBean ehCacheManagerFactoryBean() file: server/catgenome/src/main/java/com/epam/catgenome/app/AclSecurityConfiguration.java start line: 170 end line: 174 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5608 unit: private RequestMatcher getRedirectRequestMatcher() file: server/catgenome/src/main/java/com/epam/catgenome/app/JWTSecurityConfiguration.java start line: 167 end line: 171 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5609 unit: public SingleLogoutProfile logoutprofile() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 329 end line: 333 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5610 unit: public SAMLEntryPoint samlEntryPoint() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 359 end line: 363 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5611 unit: public CachingMetadataManager metadata() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 397 end line: 401 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5612 unit: public SimpleUrlLogoutSuccessHandler successLogoutHandler() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 468 end line: 472 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5613 unit: public OptionalSAMLLogoutFilter samlLogoutFilter() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 495 end line: 499 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5614 unit: public static String getSeparatorByExtension() file: server/catgenome/src/main/java/com/epam/catgenome/util/FileFormat.java start line: 51 end line: 55 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5615 unit: public static Stream search() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/MotifSearcher.java start line: 41 end line: 45 size: 5 LOC McCabe index: 1 number of parameters: 6 id: 5616 unit: public Parser() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/Parser.java start line: 47 end line: 51 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5617 unit: public AbstractFeatureSorter() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/AbstractFeatureSorter.java start line: 59 end line: 63 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5618 unit: public SortableRecord() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/SortableRecord.java start line: 33 end line: 37 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5619 unit: public void seek() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobSeekableStream.java start line: 65 end line: 69 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5620 unit: public InputStream loadFromTo() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 138 end line: 142 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5621 unit: private BlobClient getBlobURL() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 152 end line: 156 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5622 unit: public static File getFile() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 183 end line: 187 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5623 unit: public static File getDirectory() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 196 end line: 200 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5624 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/util/InfoFieldParser.java start line: 32 end line: 36 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5625 unit: public static String serializeAttributes() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 520 end line: 524 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5626 unit: public static Map deSerialize() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 539 end line: 543 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5627 unit: public static DownsamplingSifter createSifter() file: server/catgenome/src/main/java/com/epam/catgenome/util/BamUtil.java start line: 208 end line: 213 size: 5 LOC McCabe index: 2 number of parameters: 4 id: 5628 unit: public static String getInClause() file: server/catgenome/src/main/java/com/epam/catgenome/util/db/DBQueryUtils.java start line: 47 end line: 51 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5629 unit: public DiskBasedList() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 62 end line: 66 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5630 unit: public void clear() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 89 end line: 93 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5631 unit: public boolean hasNext() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 136 end line: 141 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 5632 unit: public InputStream loadFrom() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 176 end line: 180 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5633 unit: public void seek() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3SeekableStream.java start line: 65 end line: 69 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5634 unit: public static AbstractFeatureReader getFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 71 end line: 75 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5635 unit: public static AbstractFeatureReader getFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 82 end line: 86 size: 5 LOC McCabe index: 1 number of parameters: 4 id: 5636 unit: public void putInCache() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/EhCacheBasedIndexCache.java start line: 66 end line: 71 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5637 unit: public static AbstractFeatureReader getFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractEnhancedFeatureReader.java start line: 61 end line: 65 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5638 unit: public static int readInt() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 231 end line: 235 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5639 unit: public static long readLong() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 237 end line: 241 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5640 unit: private void readIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 355 end line: 359 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5641 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 224 end line: 229 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5642 unit: public long skip() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureSeekableStream.java start line: 88 end line: 92 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5643 unit: public JwtAuthenticationToken() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtAuthenticationToken.java start line: 41 end line: 45 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5644 unit: public BrowserUser() file: server/catgenome/src/main/java/com/epam/catgenome/security/BrowserUser.java start line: 48 end line: 52 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5645 unit: public LookupStrategyImpl() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 84 end line: 88 size: 5 LOC McCabe index: 1 number of parameters: 4 id: 5646 unit: public boolean isGranted() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 642 end line: 646 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5647 unit: public boolean isHeatmapRegisteredForReference() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 341 end line: 345 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5648 unit: public Sid getSid() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 124 end line: 128 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 5649 unit: public void changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 166 end line: 170 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5650 unit: public void deleteAclIdentity() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/aspect/AclAspect.java start line: 115 end line: 119 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5651 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermission.java start line: 78 end line: 82 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5652 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermission.java start line: 85 end line: 89 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5653 unit: public AclSecuredEntry getPermissions() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 121 end line: 125 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5654 unit: private void clearAces() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 316 end line: 320 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5655 unit: public void doFilter() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/OptionalSAMLLogoutFilter.java start line: 105 end line: 109 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5656 unit: protected boolean isGlobalLogout() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/OptionalSAMLLogoutFilter.java start line: 194 end line: 198 size: 5 LOC McCabe index: 3 number of parameters: 2 id: 5657 unit: public String getRequestURI() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLContextProviderCustomSignKey.java start line: 120 end line: 124 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5658 unit: private void addRequiredRoles() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLUserDetailsServiceImpl.java start line: 254 end line: 258 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5659 unit: public FileExtensionMapping() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/FileExtensionMapping.java start line: 39 end line: 43 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5660 unit: public void addTail() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamReferenceBuffer.java start line: 49 end line: 53 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5661 unit: public void addHead() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamReferenceBuffer.java start line: 59 end line: 63 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5662 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/TrackDirectionType.java start line: 51 end line: 55 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5663 unit: public MrnaProteinSequenceVariants() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/MrnaProteinSequenceVariants.java start line: 48 end line: 52 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5664 unit: public ProteinSequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequence.java start line: 49 end line: 53 size: 5 LOC McCabe index: 1 number of parameters: 4 id: 5665 unit: public BaseEntity() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BaseEntity.java start line: 63 end line: 67 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5666 unit: public GeneTranscript() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneTranscript.java start line: 54 end line: 58 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5667 unit: public List getLeaves() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 72 end line: 76 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5668 unit: public Pointer() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/Pointer.java start line: 62 end line: 66 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5669 unit: public GenotypeData() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/GenotypeData.java start line: 66 end line: 70 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5670 unit: public InfoItem() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/InfoItem.java start line: 51 end line: 55 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5671 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ChainMinMax.java start line: 43 end line: 47 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5672 unit: public void addEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ChainMinMax.java start line: 81 end line: 85 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5673 unit: public void addOtherStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ChainMinMax.java start line: 87 end line: 91 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5674 unit: public void addOtherEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ChainMinMax.java start line: 93 end line: 97 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5675 unit: public void addStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ChainMinMax.java start line: 99 end line: 103 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5676 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/homolog/HomologType.java start line: 44 end line: 48 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5677 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/homolog/HomologType.java start line: 50 end line: 54 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5678 unit: public IndexSearchResult() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 68 end line: 72 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5679 unit: public IndexSearchResult() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 74 end line: 78 size: 5 LOC McCabe index: 1 number of parameters: 4 id: 5680 unit: public void mergeFrom() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 80 end line: 84 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5681 unit: public Region merge() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/motif/Region.java start line: 46 end line: 50 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5682 unit: public StrandSerializable getStrandFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/motif/MotifSearchRequest.java start line: 53 end line: 57 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5683 unit: public List getChromosomeFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/motif/MotifSearchRequest.java start line: 60 end line: 64 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5684 unit: public List getGeneFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/motif/MotifSearchRequest.java start line: 67 end line: 71 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5685 unit: public boolean isEmpty() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/motif/MotifFilter.java start line: 42 end line: 46 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 5686 unit: public Reference() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Reference.java start line: 78 end line: 82 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5687 unit: public StrandedSequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/StrandedSequence.java start line: 40 end line: 44 size: 5 LOC McCabe index: 1 number of parameters: 4 id: 5688 unit: public MafFile loadMafFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/maf/MafFileDao.java start line: 100 end line: 105 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5689 unit: public BedFile loadBedFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bed/BedFileDao.java start line: 92 end line: 97 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5690 unit: public WigFile loadWigFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/wig/WigFileDao.java start line: 72 end line: 76 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5691 unit: public BamFile loadBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamFileDao.java start line: 92 end line: 97 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5692 unit: public Boolean hasThisName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamFileDao.java start line: 105 end line: 109 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5693 unit: public NgbUser loadUserById() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 138 end line: 142 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5694 unit: public NgbUser updateUser() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 169 end line: 173 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5695 unit: public boolean isUserInGroup() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 218 end line: 222 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5696 unit: public List loadUsersList() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 224 end line: 228 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5697 unit: public List loadRoles() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 106 end line: 110 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5698 unit: private Optional loadRoleByParameter() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 155 end line: 159 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5699 unit: public ExtendedRole loadExtendedRole() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 161 end line: 165 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5700 unit: public static MapSqlParameterSource getIdListParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 223 end line: 227 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5701 unit: private static BiologicalDataItem mapBioDataItem() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 477 end line: 481 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5702 unit: public GeneFile loadGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/gene/GeneFileDao.java start line: 99 end line: 104 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5703 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 64 end line: 69 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5704 unit: public void deleteByProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 78 end line: 83 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5705 unit: public void deleteById() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 86 end line: 91 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5706 unit: public InputStream findContentById() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 93 end line: 97 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5707 unit: public ProjectDescription findById() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 99 end line: 103 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5708 unit: public Project loadProject() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 219 end line: 223 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5709 unit: public Project loadProject() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 231 end line: 235 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5710 unit: public VcfFile loadVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/vcf/VcfFileDao.java start line: 119 end line: 124 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5711 unit: public Bucket loadBucketById() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bucket/BucketDao.java start line: 91 end line: 95 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5712 unit: public void saveLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeDao.java start line: 69 end line: 73 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5713 unit: public LineageTree loadLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeDao.java start line: 104 end line: 108 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5714 unit: public void saveOrganism() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 146 end line: 150 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5715 unit: public void saveTaskParameter() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 213 end line: 217 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5716 unit: public BlastDatabase loadDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastDatabaseDao.java start line: 101 end line: 105 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5717 unit: private void closeIndices() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 967 end line: 971 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5718 unit: public E buildEntry() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/AbstractDocumentBuilder.java start line: 134 end line: 139 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5719 unit: public HomologGroup save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupDao.java start line: 67 end line: 71 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5720 unit: public Gene save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneDescDao.java start line: 66 end line: 70 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5721 unit: public HomologDatabase save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologDatabaseDao.java start line: 64 end line: 68 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5722 unit: public List loadGroupsByGeneIds() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupGeneDao.java start line: 126 end line: 130 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5723 unit: public NGBPathway loadPathway() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayDao.java start line: 94 end line: 98 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5724 unit: public SegFile loadSegFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 110 end line: 115 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5725 unit: private static Set dataToSet() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 297 end line: 301 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5726 unit: public MetadataVO get() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 61 end line: 65 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 5727 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pdb/PdbFileDao.java start line: 115 end line: 119 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5728 unit: public List loadReferenceGenomesByTaxId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 272 end line: 276 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5729 unit: public List loadAllChromosomesByReferenceId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 320 end line: 324 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5730 unit: public int searchBookmarkCount() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 107 end line: 112 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5731 unit: public Bookmark loadBookmarkById() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 120 end line: 124 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5732 unit: public Long createId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/DaoHelper.java start line: 78 end line: 82 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5733 unit: public static String getQueryFilledWithIdArray() file: server/catgenome/src/main/java/com/epam/catgenome/dao/DaoHelper.java start line: 84 end line: 88 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5734 unit: public static String getQueryFilledWithStringArray() file: server/catgenome/src/main/java/com/epam/catgenome/dao/DaoHelper.java start line: 90 end line: 94 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5735 unit: public static String getQueryFilledWithTempTable() file: server/catgenome/src/main/java/com/epam/catgenome/dao/DaoHelper.java start line: 96 end line: 100 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5736 unit: public static String replaceInClause() file: server/catgenome/src/main/java/com/epam/catgenome/dao/DaoHelper.java start line: 146 end line: 150 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5737 unit: public NGBSession create() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 64 end line: 68 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5738 unit: public List filter() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 71 end line: 75 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5739 unit: public Optional delete() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 84 end line: 88 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5740 unit: public FilesVO() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/FilesVO.java start line: 20 end line: 24 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5741 unit: public static Track convertToTrack() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/Query2TrackConverter.java start line: 56 end line: 60 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5742 unit: public static SampledTrack convertToSampledTrack() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/Query2TrackConverter.java start line: 69 end line: 73 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5743 unit: public String getGene() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 77 end line: 81 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5744 unit: public Result reindexBed() file: server/catgenome/src/main/java/com/epam/catgenome/controller/bed/BedController.java start line: 164 end line: 168 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5745 unit: public Result loadRead() file: server/catgenome/src/main/java/com/epam/catgenome/controller/bam/BamController.java start line: 201 end line: 205 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5746 unit: public final Result deleteFileBiBioItemId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/dataitem/DataItemController.java start line: 112 end line: 116 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5747 unit: public Result updateGeneFeatureByUid() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/GeneController.java start line: 430 end line: 434 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5748 unit: public Result loadProject() file: server/catgenome/src/main/java/com/epam/catgenome/controller/project/ProjectController.java start line: 146 end line: 150 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5749 unit: public Result saveProject() file: server/catgenome/src/main/java/com/epam/catgenome/controller/project/ProjectController.java start line: 165 end line: 169 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5750 unit: public Result hideProjectItem() file: server/catgenome/src/main/java/com/epam/catgenome/controller/project/ProjectController.java start line: 245 end line: 249 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5751 unit: public Result searchFeatureInProject() file: server/catgenome/src/main/java/com/epam/catgenome/controller/project/ProjectController.java start line: 260 end line: 264 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5752 unit: public Result setVcfAliases() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vcf/VcfController.java start line: 117 end line: 121 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5753 unit: public Result getFiltersInfo() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vcf/VcfController.java start line: 255 end line: 260 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5754 unit: public Result uploadTaxonomyDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/controller/externaldb/TaxonomyController.java start line: 86 end line: 90 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5755 unit: public Result importHomologeneDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/controller/externaldb/HomologeneController.java start line: 87 end line: 91 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5756 unit: public Result fetchCoordinates() file: server/catgenome/src/main/java/com/epam/catgenome/controller/blast/BlastUtilController.java start line: 58 end line: 62 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5757 unit: public Result updateRowTree() file: server/catgenome/src/main/java/com/epam/catgenome/controller/heatmap/HeatmapController.java start line: 152 end line: 156 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5758 unit: public Result updateColumnTree() file: server/catgenome/src/main/java/com/epam/catgenome/controller/heatmap/HeatmapController.java start line: 166 end line: 170 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5759 unit: private Result() file: server/catgenome/src/main/java/com/epam/catgenome/controller/Result.java start line: 56 end line: 60 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5760 unit: public Result getSequence() file: server/catgenome/src/main/java/com/epam/catgenome/controller/sequence/SequenceController.java start line: 74 end line: 78 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5761 unit: public Result updateMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/controller/pdb/PdbFileController.java start line: 115 end line: 119 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5762 unit: public void load() file: server/catgenome/src/main/java/com/epam/catgenome/controller/pdb/PdbFileController.java start line: 142 end line: 146 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5763 unit: public Result getAvailableFieldsToSearch() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 257 end line: 261 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5764 unit: public Result unregisterSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 364 end line: 368 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5765 unit: public MafFile load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafFileManager.java start line: 84 end line: 88 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5766 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/SequenceSource.java start line: 66 end line: 70 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5767 unit: public NggbMafFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 75 end line: 79 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5768 unit: public int getTaskNumberOfThreads() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TaskExecutorService.java start line: 133 end line: 137 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5769 unit: public NggbSimpleBedFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 54 end line: 58 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5770 unit: public NggbMultiFormatBedFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 42 end line: 46 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5771 unit: public String getSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/OpenAIChatGPT35.java start line: 73 end line: 77 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5772 unit: private LLMHandler getHandler() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/LLMService.java start line: 99 end line: 103 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5773 unit: public String getSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/OpenAIChatGPT40.java start line: 49 end line: 53 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5774 unit: public OpenAIClient() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/OpenAIClient.java start line: 51 end line: 55 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5775 unit: public String getSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/CustomLLMApiClient.java start line: 48 end line: 52 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5776 unit: public String getChatResponse() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/CustomLLMHandler.java start line: 80 end line: 84 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5777 unit: public Person loadPersonByNameAndPassword() file: server/catgenome/src/main/java/com/epam/catgenome/manager/person/PersonManager.java start line: 83 end line: 87 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5778 unit: public Chromosome validateUrlTrack() file: server/catgenome/src/main/java/com/epam/catgenome/manager/TrackHelper.java start line: 167 end line: 172 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5779 unit: private static void checkScaleFactor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/TrackHelper.java start line: 217 end line: 221 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5780 unit: private List getSupportedExts() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/FacadeWigManager.java start line: 263 end line: 267 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5781 unit: protected void assertFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/BedGraphProcessor.java start line: 132 end line: 136 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5782 unit: private boolean parseWig() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigProcessor.java start line: 114 end line: 118 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5783 unit: private BigWigFile readWig() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigProcessor.java start line: 131 end line: 135 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5784 unit: public void add() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/filters/MiddleSAMRecordFilter.java start line: 61 end line: 65 size: 5 LOC McCabe index: 1 number of parameters: 6 id: 5785 unit: private void assertNotFinished() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/ConstantMemorySAMRecordSampler.java start line: 145 end line: 149 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5786 unit: private void sendBuffer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/ConstantMemorySAMRecordSampler.java start line: 182 end line: 186 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5787 unit: protected void parseBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 273 end line: 277 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5788 unit: private Optional checkAreaForReads() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 384 end line: 388 size: 5 LOC McCabe index: 2 number of parameters: 4 id: 5789 unit: private SamInputResource getAzIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 542 end line: 546 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5790 unit: private SamInputResource getS3Index() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 571 end line: 575 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5791 unit: private void checkFinished() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamTrackEmitter.java start line: 141 end line: 145 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5792 unit: private List getSpliceJunctionsList() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 291 end line: 295 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5793 unit: private void processDeletion() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 412 end line: 417 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5794 unit: public Map getFormats() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemManager.java start line: 208 end line: 212 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5795 unit: public UserContext loadUserContext() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 108 end line: 112 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5796 unit: public NgbUser loadUserById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 126 end line: 130 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5797 unit: public NgbUser updateUser() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 142 end line: 146 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5798 unit: public boolean userUpdateRequired() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 171 end line: 176 size: 5 LOC McCabe index: 2 number of parameters: 3 id: 5799 unit: public Collection loadUsersByGroup() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 222 end line: 226 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5800 unit: public Role loadRole() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 124 end line: 128 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5801 unit: protected AbstractGeneReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 95 end line: 99 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5802 unit: protected void setExonsCountAndLength() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 633 end line: 637 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 5803 unit: protected void removeIfEmpty() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 639 end line: 643 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 5804 unit: private GeneIndexIterator indexIterator() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 673 end line: 677 size: 5 LOC McCabe index: 1 number of parameters: 4 id: 5805 unit: public GeneFile load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneFileManager.java start line: 133 end line: 137 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5806 unit: public List loadFiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneFileManager.java start line: 146 end line: 150 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5807 unit: public Track loadGenesFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneTrackManager.java start line: 114 end line: 119 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5808 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/StrandSerializable.java start line: 46 end line: 50 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5809 unit: private void addNumberActivityIfRequired() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneActivityService.java start line: 98 end line: 102 size: 5 LOC McCabe index: 3 number of parameters: 4 id: 5810 unit: public List loadExonsInViewPort() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 130 end line: 134 size: 5 LOC McCabe index: 1 number of parameters: 6 id: 5811 unit: public List loadExonsInTrack() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 137 end line: 141 size: 5 LOC McCabe index: 1 number of parameters: 6 id: 5812 unit: public Gff3FeatureImpl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 45 end line: 50 size: 5 LOC McCabe index: 1 number of parameters: 9 id: 5813 unit: public Set flatten() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 271 end line: 276 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5814 unit: private void addParentEdges() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 308 end line: 312 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5815 unit: private void addChildEdges() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 314 end line: 318 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5816 unit: public Gff3Writer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 34 end line: 40 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5817 unit: public void processRegistration() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 160 end line: 164 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5818 unit: private void indexFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 360 end line: 364 size: 5 LOC McCabe index: 2 number of parameters: 3 id: 5819 unit: private String buildGffFileNameFromFeatureCounts() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 1165 end line: 1169 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5820 unit: public ProjectDescription load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectDescriptionService.java start line: 93 end line: 97 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5821 unit: public ProjectDescription deleteById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectDescriptionService.java start line: 104 end line: 108 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5822 unit: private void loadProjectStuff() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 446 end line: 450 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5823 unit: private File createTmpFileFromURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/DownloadFileManager.java start line: 168 end line: 172 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5824 unit: public static VcfReader createVcfReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/AbstractVcfReader.java start line: 84 end line: 88 size: 5 LOC McCabe index: 2 number of parameters: 4 id: 5825 unit: public static boolean isVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 189 end line: 193 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 5826 unit: private boolean checkBounds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 321 end line: 327 size: 5 LOC McCabe index: 3 number of parameters: 4 id: 5827 unit: public Track loadVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfSecurityService.java start line: 87 end line: 91 size: 5 LOC McCabe index: 1 number of parameters: 6 id: 5828 unit: public VcfFieldValues loadFieldValues() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfSecurityService.java start line: 126 end line: 130 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5829 unit: public void setVcfAliases() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfFileManager.java start line: 159 end line: 163 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5830 unit: private LineageTree getLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeManager.java start line: 258 end line: 262 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5831 unit: public List groupVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 324 end line: 328 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5832 unit: private Query buildSearchQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 192 end line: 196 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5833 unit: public void deleteGenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 242 end line: 246 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5834 unit: private static void requireNonNull() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 516 end line: 520 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5835 unit: private static void ensemblExonVO2Transcript() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ExtenalDBUtils.java start line: 145 end line: 149 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5836 unit: private static BaseGeneEntity secondaryStructure2BaseGaneEntity() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ExtenalDBUtils.java start line: 188 end line: 192 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5837 unit: public ReferenceSource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 377 end line: 381 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5838 unit: private void resetProxy() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/HttpDataManager.java start line: 203 end line: 207 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 5839 unit: public int getParasitesPublicationsCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/PubMedService.java start line: 135 end line: 139 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5840 unit: public String getArticleAbstracts() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/PubMedService.java start line: 142 end line: 146 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5841 unit: public FullTextQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/dto/StructureRequest.java start line: 78 end line: 82 size: 5 LOC McCabe index: 1 number of parameters: 5 id: 5842 unit: public AttributesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/dto/StructureRequest.java start line: 93 end line: 97 size: 5 LOC McCabe index: 1 number of parameters: 5 id: 5843 unit: public List fetchGeneSequences() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/sequence/NCBISequenceManager.java start line: 69 end line: 73 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5844 unit: private void setProteinChains() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbEntriesManager.java start line: 156 end line: 160 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5845 unit: private long parseTotalCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbEntriesManager.java start line: 193 end line: 197 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5846 unit: private Dataset parseDataset() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbDataManager.java start line: 168 end line: 172 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5847 unit: private PdbBlock parsePdbBlock() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbDataManager.java start line: 188 end line: 192 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5848 unit: private Alignment parseAlignment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbDataManager.java start line: 194 end line: 198 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5849 unit: private Dasalignment parseDasalignment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbDataManager.java start line: 200 end line: 204 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5850 unit: public Result() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/dto/Result.java start line: 34 end line: 38 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5851 unit: public void delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastDatabaseManager.java start line: 54 end line: 58 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5852 unit: public BlastDatabase loadById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastDatabaseManager.java start line: 60 end line: 64 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5853 unit: public BlastTask getBlastTask() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 101 end line: 105 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5854 unit: public Query getByRangeQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 227 end line: 231 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5855 unit: protected TokenStreamComponents createComponents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/CaseInsensitiveWhitespaceAnalyzer.java start line: 34 end line: 38 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5856 unit: private static Sbgn readFromFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 373 end line: 377 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5857 unit: private NGBPathway getPathway() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 540 end line: 544 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5858 unit: public void checkIfUrlBrowsingAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 356 end line: 360 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5859 unit: private void makeTabixIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2206 end line: 2210 size: 5 LOC McCabe index: 1 number of parameters: 4 id: 5860 unit: public void updateCellAnnotation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapSecurityService.java start line: 83 end line: 87 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5861 unit: public void deleteHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 185 end line: 189 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5862 unit: private Heatmap getHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 366 end line: 370 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5863 unit: private HeatmapAnnotationType getAnnotationType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 473 end line: 477 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5864 unit: public NGBGenbankReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/NGBGenbankReader.java start line: 56 end line: 60 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5865 unit: public NGBGenbankReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/NGBGenbankReader.java start line: 75 end line: 79 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5866 unit: public void updateMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileManager.java start line: 92 end line: 96 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5867 unit: public void delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileManager.java start line: 99 end line: 103 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5868 unit: private PdbFile getPdbFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileManager.java start line: 146 end line: 150 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5869 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaUtils.java start line: 21 end line: 25 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5870 unit: public FastaSequenceFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaSequenceFile.java start line: 19 end line: 23 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5871 unit: private void writeNibHead() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataWriter.java start line: 124 end line: 128 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5872 unit: private List getGCForGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 571 end line: 576 size: 5 LOC McCabe index: 1 number of parameters: 4 id: 5873 unit: public Chromosome loadChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 302 end line: 306 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5874 unit: public List loadChromosomes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 318 end line: 322 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5875 unit: public Species updateSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 458 end line: 462 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5876 unit: public AbstractSecuredEntity changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/manager/session/NGBSessionManager.java start line: 88 end line: 92 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5877 unit: public GeneReadingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/GeneReadingException.java start line: 42 end line: 46 size: 5 LOC McCabe index: 1 number of parameters: 5 id: 5878 unit: public GeneReadingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/GeneReadingException.java start line: 48 end line: 52 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5879 unit: register() file: client/client/dataServices/bam/bam-data-service.js start line: 27 end line: 31 size: 5 LOC McCabe index: 2 number of parameters: 6 id: 5880 unit: constructor() file: client/client/dataServices/data-service.js start line: 36 end line: 40 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5881 unit: export function parseFullCondition() file: client/client/dataServices/utils/highlight-condition-service.js start line: 85 end line: 89 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5882 unit: this._currentUser.hasRole = function() file: client/client/dataServices/user/user-data-service.js start line: 57 end line: 61 size: 5 LOC McCabe index: 4 number of parameters: 1 id: 5883 unit: function s4() file: client/client/dataServices/local/local-data-service.js start line: 97 end line: 101 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5884 unit: resetCoverageStatistics() file: client/client/app/shared/bamCoverageContext/index.js start line: 93 end line: 97 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5885 unit: getTracks() file: client/client/app/shared/selectionContext/index.js start line: 38 end line: 42 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5886 unit: newPos: getCurrentPos() file: client/client/app/shared/dnd/index.js start line: 77 end line: 81 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5887 unit: constructor() file: client/client/app/shared/dispatcher/dispatcher.js start line: 14 end line: 18 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5888 unit: constructor() file: client/client/app/shared/utils/events.js start line: 64 end line: 69 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5889 unit: export function stringToDash() file: client/client/app/shared/utils/String.js start line: 1 end line: 5 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5890 unit: destroy() file: client/client/app/shared/eventHotkeys/index.js start line: 34 end line: 38 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5891 unit: export default function() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.directive.js start line: 3 end line: 134 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5892 unit: function closeContextMenu() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.directive.js start line: 106 end line: 110 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5893 unit: function closeContextMenuIfVisible() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.directive.js start line: 119 end line: 123 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 5894 unit: constructor() file: client/client/app/shared/components/ngbChat/ngbChat.controller.js start line: 8 end line: 12 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5895 unit: removeUser() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 146 end line: 150 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5896 unit: getDefaultRoles() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 16 end line: 20 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5897 unit: getRoles() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 22 end line: 26 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5898 unit: getUsers() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 28 end line: 32 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5899 unit: getUsersGroupsAndRoles() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 34 end line: 38 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5900 unit: getRoleUsers() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 40 end line: 44 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5901 unit: get docsUrl() file: client/client/app/shared/components/ngbMainToolbar/ngbInfoProduct/ngbInfoProduct.controller.js start line: 9 end line: 13 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 5902 unit: controller: function() file: client/client/app/shared/components/ngbMainToolbar/ngbVersion/ngbVersion.component.js start line: 3 end line: 7 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5903 unit: prepareDefaultHighlightProfiles() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.controller.js start line: 100 end line: 104 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5904 unit: _pickOutHotkey() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 108 end line: 112 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5905 unit: static decimalToHexString() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 133 end line: 137 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5906 unit: controller: function() file: client/client/app/shared/components/ngbLLM/ngbLLM.dialog.run.js start line: 17 end line: 59 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 5907 unit: reportModelChanged() file: client/client/app/shared/components/ngbLLM/ngbLLM.controller.js start line: 84 end line: 88 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5908 unit: blatSearchPanelRemoved() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 528 end line: 533 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5909 unit: loadLayout() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 725 end line: 729 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5910 unit: setPage() file: client/client/app/shared/components/ngbPagination/ngbPagination.controller.js start line: 26 end line: 30 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5911 unit: export function capitalizeFilter() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantDetails.controller.js start line: 35 end line: 39 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5912 unit: _handleError() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantInfo/ngbVariantInfo.controller.js start line: 53 end line: 57 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5913 unit: constructor() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantDbSnp/ngbVariantDbSnp.service.js start line: 13 end line: 17 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5914 unit: _handleError() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantDbSnp/ngbVariantDbSnp.controller.js start line: 58 end line: 62 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5915 unit: onHeatmapOptionsUpdated() file: client/client/app/shared/components/ngbHeatmap/ngbHeatmap.controller.js start line: 38 end line: 42 size: 5 LOC McCabe index: 4 number of parameters: 0 id: 5916 unit: onHeatmapOptionsChangeCallback() file: client/client/app/shared/components/ngbHeatmap/ngbHeatmap.controller.js start line: 64 end line: 68 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5917 unit: onHeatmapNavigationCallback() file: client/client/app/shared/components/ngbHeatmap/ngbHeatmap.controller.js start line: 70 end line: 74 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5918 unit: get newTagValueIsDuplicate() file: client/client/app/shared/components/ngbTags/ngbTags.controller.js start line: 24 end line: 28 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 5919 unit: constructor() file: client/client/app/shared/components/ngbSearch/ngbSearch.controller.js start line: 16 end line: 20 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5920 unit: controller: function() file: client/client/app/shared/components/ngbHeader/ngbVersion/ngbVersion.component.js start line: 3 end line: 7 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5921 unit: show() file: client/client/app/shared/components/widgets/ngbColorPicker/ngbColorPicker.controller.js start line: 71 end line: 75 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5922 unit: hideElement() file: client/client/app/shared/components/widgets/ngbColorPicker/ngbColorPicker.controller.js start line: 77 end line: 81 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 5923 unit: showElement() file: client/client/app/shared/components/widgets/ngbColorPicker/ngbColorPicker.controller.js start line: 83 end line: 87 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 5924 unit: export default function() file: client/client/app/shared/components/widgets/TextBox/ngAutoFocus.js start line: 1 end line: 10 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5925 unit: get variantsGroupError() file: client/client/app/shared/projectContext/index.js start line: 383 end line: 387 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 5926 unit: get layout() file: client/client/app/shared/projectContext/index.js start line: 409 end line: 413 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5927 unit: convertTracksStateToJson() file: client/client/app/shared/projectContext/index.js start line: 499 end line: 524 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5928 unit: hotkeyPressed() file: client/client/app/shared/projectContext/index.js start line: 819 end line: 823 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5929 unit: resetVariantsFilter() file: client/client/app/shared/projectContext/index.js start line: 825 end line: 829 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5930 unit: function findIndex() file: client/client/app/shared/projectContext/index.js start line: 2083 end line: 2087 size: 5 LOC McCabe index: 4 number of parameters: 3 id: 5931 unit: export default function() file: client/client/app/shared/filter/filterList/ngbFilterList.scroller.js start line: 1 end line: 16 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5932 unit: open: function() file: client/client/app/shared/browserDetect/index.js start line: 97 end line: 109 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5933 unit: createUrl() file: client/client/app/shared/services/stateParams.service.js start line: 13 end line: 18 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5934 unit: constructor() file: client/client/app/shared/services/trackNaming.service.js start line: 7 end line: 11 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5935 unit: setCustomNames() file: client/client/app/shared/services/trackNaming.service.js start line: 33 end line: 37 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5936 unit: rememberAction() file: client/client/app/shared/lastActionRepeater/index.js start line: 22 end line: 26 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 5937 unit: constructor() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoSections/ngbProjectInfoSections.controller.js start line: 8 end line: 12 size: 5 LOC McCabe index: 1 number of parameters: 4 id: 5938 unit: get referenceId() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 70 end line: 74 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 5939 unit: chromosomeChanged() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 405 end line: 409 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5940 unit: _finishCreating() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 503 end line: 507 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5941 unit: template: require() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoEditNote/ngbProjectInfoEditNote.component.js start line: 4 end line: 8 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5942 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetLLM.service.js start line: 15 end line: 19 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5943 unit: get isTableMode() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 85 end line: 89 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 5944 unit: changeTabState() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 164 end line: 168 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5945 unit: $scope.save = function() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 241 end line: 245 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5946 unit: get saveStatus() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 69 end line: 73 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 5947 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 99 end line: 103 size: 5 LOC McCabe index: 1 number of parameters: 4 id: 5948 unit: panelAddTargetPanel() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 109 end line: 113 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5949 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 37 end line: 41 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 5950 unit: get genesDisplay() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 5 end line: 9 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5951 unit: get llmModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 51 end line: 55 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5952 unit: set llmModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 57 end line: 61 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5953 unit: get llmModels() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 67 end line: 71 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5954 unit: onChangeLlmModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 158 end line: 162 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5955 unit: set llmModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 47 end line: 51 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5956 unit: updateGenomicsTotal() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 118 end line: 122 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 5957 unit: get tableLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 94 end line: 98 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5958 unit: get chartsLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 100 end line: 104 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5959 unit: get exportLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 105 end line: 109 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5960 unit: get loading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 73 end line: 77 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5961 unit: set loading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 79 end line: 83 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5962 unit: updateGenes() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 149 end line: 153 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5963 unit: get dataNotReady() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 52 end line: 56 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5964 unit: get dataIsMissing() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 58 end line: 62 size: 5 LOC McCabe index: 4 number of parameters: 0 id: 5965 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 70 end line: 74 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5966 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 75 end line: 79 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5967 unit: getHighlightColor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 68 end line: 72 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5968 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 211 end line: 215 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5969 unit: onClickLink() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 137 end line: 141 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5970 unit: async getDataOnPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 200 end line: 204 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5971 unit: async getDataOnPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 173 end line: 177 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5972 unit: getGenomicsResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 219 end line: 223 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5973 unit: getColor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsAlignment/ngbGenomicsAlignment.controller.js start line: 117 end line: 121 size: 5 LOC McCabe index: 2 number of parameters: 3 id: 5974 unit: panelAddBrowserPanel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 275 end line: 279 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5975 unit: async getDataOnPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 218 end line: 222 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5976 unit: async settingChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 234 end line: 238 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5977 unit: async getSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequenceTableContextMenu/ngbSequenceTableContextMenu.controller.js start line: 45 end line: 49 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5978 unit: panelAddBrowserPanel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 143 end line: 147 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5979 unit: async targetChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 124 end line: 128 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5980 unit: updateGenes() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 130 end line: 134 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5981 unit: setEmtyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 146 end line: 150 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5982 unit: applyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.controller.js start line: 125 end line: 129 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 5983 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSummary/ngbPatentsSummary.controller.js start line: 12 end line: 16 size: 5 LOC McCabe index: 1 number of parameters: 7 id: 5984 unit: get llmModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSummary/ngbPatentsSummary.controller.js start line: 34 end line: 38 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5985 unit: get llmModels() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSummary/ngbPatentsSummary.controller.js start line: 40 end line: 44 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5986 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.service.js start line: 24 end line: 28 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 5987 unit: get loading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 37 end line: 41 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5988 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 35 end line: 39 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 5989 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 103 end line: 107 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 5990 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 108 end line: 112 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5991 unit: template: require() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 300 end line: 305 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5992 unit: template: require() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 317 end line: 322 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 5993 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.service.js start line: 19 end line: 23 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 5994 unit: $scope.launch = function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetSavedIdentificationsDialog/ngbTargetSavedIdentificationsDialog.run.js start line: 197 end line: 201 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5995 unit: async showTargetsTable() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 341 end line: 345 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5996 unit: export default function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/disable-wheel-handler/index.js start line: 1 end line: 13 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 5997 unit: $scope.launch = function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetLaunchDialog/ngbTargetLaunchDialog.run.js start line: 140 end line: 144 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5998 unit: async backToTable() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 83 end line: 87 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 5999 unit: cancelImport() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 227 end line: 231 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6000 unit: removeTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 254 end line: 268 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6001 unit: applyCanceled() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterRange/ngbTargetGenesFilterRange.controller.js start line: 64 end line: 68 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6002 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 31 end line: 35 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 6003 unit: get columnsList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsFormActions/ngbTargetsFormActions.controller.js start line: 5 end line: 9 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6004 unit: resetColumnsSelection() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsFormActions/ngbTargetsFormActions.controller.js start line: 55 end line: 59 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6005 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 73 end line: 77 size: 5 LOC McCabe index: 5 number of parameters: 0 id: 6006 unit: setTableMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 116 end line: 120 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6007 unit: setAddMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 121 end line: 125 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6008 unit: setEditMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 126 end line: 130 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6009 unit: async getDetailedRead() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.service.js start line: 75 end line: 81 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6010 unit: name: camelPad() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.service.js start line: 119 end line: 123 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6011 unit: inputChanged() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbMotifsResultsFilterList.controller.js start line: 166 end line: 170 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6012 unit: async setMotifsPanel() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 161 end line: 165 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6013 unit: constructor() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.service.js start line: 24 end line: 28 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6014 unit: getOrthoParaSearch() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.service.js start line: 111 end line: 115 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6015 unit: getDataOnPage() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResultTable/ngbOrthoParaResultTable.controller.js start line: 132 end line: 136 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6016 unit: initEvents() file: client/client/app/components/ngbHomologsPanel/ngbHomologs.service.js start line: 54 end line: 58 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6017 unit: constructor() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.service.js start line: 24 end line: 28 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6018 unit: getHomologeneSearch() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.service.js start line: 112 end line: 116 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6019 unit: constructor() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResult.service.js start line: 25 end line: 29 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6020 unit: getDataOnPage() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResultTable/ngbHomologeneResultTable.controller.js start line: 130 end line: 134 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6021 unit: setPage() file: client/client/app/components/ngbHomologsPanel/ngbHomologsPanelPaginate/ngbHomologsPanelPaginate.controller.js start line: 25 end line: 29 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6022 unit: setPage() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTablePaginate/ngbBookmarksTablePaginate.controller.js start line: 39 end line: 43 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6023 unit: getDataOnPage() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.controller.js start line: 139 end line: 143 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6024 unit: refreshScope() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.controller.js start line: 212 end line: 216 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6025 unit: inputChanged() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbBookmarksFilterList.controller.js start line: 149 end line: 153 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6026 unit: resetBookmarksFilter() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 214 end line: 218 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6027 unit: export default function() file: client/client/app/components/ngbDataSets/internal/ngbDataSets.indeterminateCheckbox.js start line: 1 end line: 20 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6028 unit: userAttributes: getUserAttributesString() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 94 end line: 99 size: 5 LOC McCabe index: 4 number of parameters: 1 id: 6029 unit: get availableUsers() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 133 end line: 137 size: 5 LOC McCabe index: 6 number of parameters: 0 id: 6030 unit: get availableRoles() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 139 end line: 143 size: 5 LOC McCabe index: 6 number of parameters: 0 id: 6031 unit: template: require() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 287 end line: 292 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6032 unit: constructor() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.service.js start line: 13 end line: 17 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 6033 unit: deleteNodePermissions() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.service.js start line: 60 end line: 64 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6034 unit: grantPermission() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.service.js start line: 66 end line: 70 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 6035 unit: grantOwner() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.service.js start line: 72 end line: 76 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6036 unit: onResize() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 202 end line: 206 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6037 unit: applyGenomeFilter() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 39 end line: 43 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6038 unit: constructor() file: client/client/app/components/ngbVcfSampleAliases/ngbVcfSampleAliases.controller.js start line: 43 end line: 47 size: 5 LOC McCabe index: 1 number of parameters: 7 id: 6039 unit: prefixColumns() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 201 end line: 205 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6040 unit: resetPagination() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 221 end line: 225 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6041 unit: genesFieldIsFiltered() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 526 end line: 530 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6042 unit: resetGenesFilter() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 567 end line: 571 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6043 unit: inputChanged() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbGenesFilterList.controller.js start line: 122 end line: 126 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6044 unit: constructor() file: client/client/app/components/ngbMolecularViewer/ngbMolecularViewer.service.js start line: 8 end line: 12 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 6045 unit: openMenu() file: client/client/app/components/ngbGenomeAnnotations/ngbGenomeAnnotations.controller.js start line: 37 end line: 41 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 6046 unit: constructor() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterInput/ngbVariantsFilterInput.controller.js start line: 10 end line: 14 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6047 unit: inputChanged() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterList/ngbVariantsFilterList.controller.js start line: 126 end line: 130 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6048 unit: refreshScope() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 84 end line: 88 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6049 unit: onChange() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbCoverageFilterList.controller.js start line: 89 end line: 93 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6050 unit: async initialize() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 42 end line: 46 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6051 unit: async deleteBlastSearch() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 115 end line: 119 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6052 unit: async cancelBlastSearch() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 121 end line: 125 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6053 unit: clearSearchHistory() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 127 end line: 131 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6054 unit: static instance() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 65 end line: 69 size: 5 LOC McCabe index: 1 number of parameters: 7 id: 6055 unit: popCurrentAlignmentObject() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 292 end line: 296 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6056 unit: setPage() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanelPaginate/ngbBlastSearchPanelPaginate.controller.js start line: 25 end line: 29 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6057 unit: export default function() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearch.na.filter.js start line: 1 end line: 5 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6058 unit: async navigateToChromosome() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignmentList.controller.js start line: 51 end line: 55 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 6059 unit: async getChromosomeBySequenceId() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.service.js start line: 105 end line: 109 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6060 unit: link() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbPreventAutoClose/index.js start line: 7 end line: 11 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 6061 unit: preprocessColor() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbBedColorPreference/ngbBedColorPreference.controller.js start line: 41 end line: 45 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6062 unit: postprocessColors() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbBedColorPreference/ngbBedColorPreference.controller.js start line: 47 end line: 51 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 6063 unit: preprocessColor() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbMotifsColorPreference/ngbMotifsColorPreference.controller.js start line: 42 end line: 46 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6064 unit: postprocessColors() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbMotifsColorPreference/ngbMotifsColorPreference.controller.js start line: 48 end line: 52 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 6065 unit: constructor() file: client/client/app/components/ngbTracksView/ngbTrackNotification/ngbTrackNotification.controller.js start line: 9 end line: 13 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6066 unit: setCustomName() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 339 end line: 343 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6067 unit: _getGeneTracks() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.events.js start line: 22 end line: 26 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 6068 unit: get isStateValid() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotationDlg/ngbPathwaysAnnotationAddDlg.controller.js start line: 28 end line: 32 size: 5 LOC McCabe index: 4 number of parameters: 0 id: 6069 unit: template: require() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.controller.js start line: 104 end line: 108 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6070 unit: template: require() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.controller.js start line: 118 end line: 122 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6071 unit: constructor() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.service.js start line: 12 end line: 16 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 6072 unit: inputChanged() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysFilterList/ngbInternalPathwaysFilterList.controller.js start line: 104 end line: 108 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6073 unit: async loadSpeciesList() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 105 end line: 109 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6074 unit: initEvents() file: client/client/app/components/ngbPathways/ngbPathways.service.js start line: 108 end line: 112 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6075 unit: clearAnnotation() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbInternalPathwayNode.service.js start line: 14 end line: 18 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 6076 unit: template: require() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbInternalPathwayNode.component.js start line: 5 end line: 9 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6077 unit: constructor() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbPathwayAnnotationMark/ngbPathwayAnnotationMark.service.js start line: 11 end line: 15 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6078 unit: navigate() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbInternalPathwayNode.controller.js start line: 88 end line: 92 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 6079 unit: highlightNode() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbInternalPathwayNode.controller.js start line: 130 end line: 134 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6080 unit: get annotated() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 145 end line: 149 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 6081 unit: centerCytoscape() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 367 end line: 371 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6082 unit: setPage() file: client/client/app/components/ngbPathways/ngbPathwaysPanelPaginate/ngbPathwaysPanelPaginate.controller.js start line: 25 end line: 29 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6083 unit: template: require() file: client/client/app/components/ngbStrainLineage/ngbStrainLineageNode/ngbStrainLineageNode.component.js start line: 5 end line: 9 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6084 unit: highlightNode() file: client/client/app/components/ngbStrainLineage/ngbStrainLineageNode/ngbStrainLineageNode.controller.js start line: 92 end line: 96 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6085 unit: set selectedTreeId() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 32 end line: 36 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6086 unit: export default function() file: client/client/app/components/ngbStrainLineage/dateFilter.js start line: 15 end line: 19 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 6087 unit: centerCytoscape() file: client/client/app/components/ngbStrainLineage/ngbCytoscape/ngbCytoscape.controller.js start line: 236 end line: 240 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6088 unit: _transformUniprotData() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfo.service.js start line: 65 end line: 71 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6089 unit: _updateFeatureInfo() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfo.controller.js start line: 64 end line: 68 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6090 unit: $scope.yes = function() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.run.js start line: 101 end line: 105 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6091 unit: set heatmap() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 80 end line: 84 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6092 unit: resolution: getScreenResolution() file: client/client/modules/render/core/configuration/drawingConfiguration.js start line: 5 end line: 10 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6093 unit: moveBrush() file: client/client/modules/render/core/track/track.js start line: 99 end line: 103 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6094 unit: hideTrack() file: client/client/modules/render/core/track/track.js start line: 333 end line: 337 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6095 unit: showTrack() file: client/client/modules/render/core/track/track.js start line: 339 end line: 343 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6096 unit: refreshScope() file: client/client/modules/render/core/track/track.js start line: 388 end line: 392 size: 5 LOC McCabe index: 3 number of parameters: 0 id: 6097 unit: move() file: client/client/modules/render/core/track/tooltip.js start line: 81 end line: 85 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6098 unit: const handler = function() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 141 end line: 145 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6099 unit: _positionFitsScrollIndicatorBoundaries() file: client/client/modules/render/core/track/scrollableTrack/scrollableTrack.js start line: 96 end line: 100 size: 5 LOC McCabe index: 5 number of parameters: 1 id: 6100 unit: constructor() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRenderer.js start line: 18 end line: 22 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6101 unit: rebuildContainer() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRenderer.js start line: 80 end line: 84 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6102 unit: scrollIndicatorBoundaries() file: client/client/modules/render/core/track/cachedTrack/cachedTrackWithVerticalScroll.js start line: 29 end line: 33 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6103 unit: setScrollPosition() file: client/client/modules/render/core/track/cachedTrack/cachedTrackWithVerticalScroll.js start line: 35 end line: 39 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6104 unit: set maximumRange() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 70 end line: 74 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 6105 unit: start: normalize() file: client/client/modules/render/core/viewport/viewport.js start line: 325 end line: 330 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 6106 unit: constructor() file: client/client/modules/render/core/info/tableInfo.js start line: 4 end line: 9 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 6107 unit: export default function Menu() file: client/client/modules/render/core/menu/index.js start line: 45 end line: 49 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6108 unit: ensureLabel() file: client/client/modules/render/core/labelsManager/index.js start line: 137 end line: 141 size: 5 LOC McCabe index: 4 number of parameters: 3 id: 6109 unit: rerender() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 688 end line: 692 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6110 unit: get strandIndicatorConfig() file: client/client/modules/render/tracks/bed/internal/renderer/features/drawing/bedItemFeatureRenderer.js start line: 8 end line: 12 size: 5 LOC McCabe index: 4 number of parameters: 0 id: 6111 unit: startRender() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 62 end line: 66 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6112 unit: _renderMismatch() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 446 end line: 450 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6113 unit: constructor() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderProcessor.js start line: 27 end line: 31 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6114 unit: setYPositionFromCanvasPosition() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 134 end line: 138 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6115 unit: constructor() file: client/client/modules/render/tracks/bam/internal/transformers/bamReadsCoverageTransformer.js start line: 11 end line: 15 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6116 unit: clear() file: client/client/modules/render/tracks/bam/internal/transformers/layoutReads.js start line: 124 end line: 128 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6117 unit: pairSimplified: getPairOrientation() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 288 end line: 294 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 6118 unit: sortingModeChanged() file: client/client/modules/render/tracks/bam/index.js start line: 429 end line: 433 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6119 unit: onScroll() file: client/client/modules/render/tracks/bam/index.js start line: 531 end line: 535 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6120 unit: onDrag() file: client/client/modules/render/tracks/bam/index.js start line: 553 end line: 557 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6121 unit: clearData() file: client/client/modules/render/tracks/bam/index.js start line: 645 end line: 649 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6122 unit: function mapTrackFn() file: client/client/modules/render/tracks/bam/menu/sortingModeMenu.js start line: 4 end line: 8 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6123 unit: next: process() file: client/client/modules/render/tracks/motifs/index.js start line: 234 end line: 238 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 6124 unit: get strandIndicatorConfig() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/geneFeatureRenderer.js start line: 18 end line: 22 size: 5 LOC McCabe index: 4 number of parameters: 0 id: 6125 unit: get strandIndicatorConfig() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/transcriptFeatureRenderer.js start line: 19 end line: 23 size: 5 LOC McCabe index: 4 number of parameters: 0 id: 6126 unit: manageMask() file: client/client/modules/render/tracks/gene/internal/renderer/geneRenderer.js start line: 226 end line: 230 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6127 unit: onMouseOut() file: client/client/modules/render/tracks/gene/index.js start line: 318 end line: 322 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6128 unit: constructor() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 12 end line: 16 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 6129 unit: _positionFitsScrollIndicatorBoundaries() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 320 end line: 324 size: 5 LOC McCabe index: 5 number of parameters: 1 id: 6130 unit: createRulerBody() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 176 end line: 180 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6131 unit: createCursor() file: client/client/modules/render/tracks/ruler/rulerBrush.js start line: 155 end line: 159 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6132 unit: getTotalHeight() file: client/client/modules/render/tracks/ruler/index.js start line: 28 end line: 32 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6133 unit: get strandIndicatorConfig() file: client/client/modules/render/tracks/featureCounts/internal/renderer/features/drawing/fcFeatureRenderer.js start line: 9 end line: 13 size: 5 LOC McCabe index: 4 number of parameters: 0 id: 6134 unit: constructor() file: client/client/modules/render/tracks/featureCounts/sourcesManager/index.js start line: 9 end line: 13 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6135 unit: onScroll() file: client/client/modules/render/tracks/seg/index.js start line: 99 end line: 103 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6136 unit: constructor() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 66 end line: 70 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6137 unit: _gradientColor() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 255 end line: 259 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6138 unit: destructor() file: client/client/modules/render/tracks/heatmap/index.js start line: 55 end line: 59 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6139 unit: function setDendrogramMode() file: client/client/modules/render/tracks/heatmap/menu/displayMenu.js start line: 1 end line: 5 size: 5 LOC McCabe index: 3 number of parameters: 2 id: 6140 unit: function setAnnotationsMode() file: client/client/modules/render/tracks/heatmap/menu/displayMenu.js start line: 7 end line: 11 size: 5 LOC McCabe index: 3 number of parameters: 2 id: 6141 unit: function setColorSchemeMode() file: client/client/modules/render/tracks/heatmap/menu/colorSchemeMenu.js start line: 14 end line: 18 size: 5 LOC McCabe index: 4 number of parameters: 2 id: 6142 unit: static swap() file: client/client/modules/render/utilities/sorting.js start line: 39 end line: 43 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 6143 unit: constructor() file: client/client/modules/render/utilities/groupAutoScaleManager.js start line: 20 end line: 24 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6144 unit: function isLeftOpenRange() file: client/client/modules/render/utilities/linearDimensionsConflicts.js start line: 27 end line: 31 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 6145 unit: function isRightOpenRange() file: client/client/modules/render/utilities/linearDimensionsConflicts.js start line: 39 end line: 43 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 6146 unit: closestBase: round() file: client/client/modules/render/utilities/coordinateSystem.js start line: 21 end line: 26 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6147 unit: hideTooltip() file: client/client/modules/render/heatmap/interactions/index.js start line: 134 end line: 138 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6148 unit: constructor() file: client/client/modules/render/heatmap/interactions/interactive-zone.js start line: 24 end line: 28 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6149 unit: constructor() file: client/client/modules/render/heatmap/interactions/events/interactive-zone-click-event.js start line: 15 end line: 23 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 6150 unit: get visible() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 101 end line: 105 size: 5 LOC McCabe index: 4 number of parameters: 0 id: 6151 unit: getGlobalValue() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 216 end line: 220 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6152 unit: local: createSection() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 245 end line: 250 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6153 unit: getHoveredValue() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 511 end line: 515 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 6154 unit: getHoveredValue() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 558 end line: 562 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 6155 unit: onClick() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 195 end line: 199 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6156 unit: onDragEnd() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 201 end line: 205 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6157 unit: emitDestroy() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 80 end line: 84 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6158 unit: getGraphicsForUpdate() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/canvas-graphics.js start line: 33 end line: 37 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6159 unit: constructor() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/index.js start line: 10 end line: 18 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6160 unit: handleChange() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/index.js start line: 49 end line: 53 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6161 unit: clearGraphics() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/index.js start line: 84 end line: 88 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6162 unit: clear() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry.js start line: 92 end line: 96 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6163 unit: clearGraphics() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry-collection.js start line: 93 end line: 97 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6164 unit: void main() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/helpers.js start line: 55 end line: 59 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6165 unit: void main() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/helpers.js start line: 72 end line: 76 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6166 unit: requestRebuildAnimationFrame() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 166 end line: 170 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6167 unit: constructor() file: client/client/modules/render/heatmap/navigation/index.js start line: 55 end line: 59 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6168 unit: stop() file: client/client/modules/render/heatmap/animation/animation-set.js start line: 47 end line: 51 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6169 unit: onNavigated() file: client/client/modules/render/heatmap/index.js start line: 169 end line: 173 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6170 unit: anotherOptions() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 33 end line: 37 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 6171 unit: function parseDataItem() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 84 end line: 88 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 6172 unit: b: movePoint() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 272 end line: 283 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 6173 unit: d: rotate() file: client/client/modules/render/heatmap/utilities/vector-utilities.js start line: 341 end line: 352 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 6174 unit: export function reportInitialized() file: client/client/modules/render/heatmap/utilities/make-initializable.js start line: 8 end line: 12 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6175 unit: function onInitialized() file: client/client/modules/render/heatmap/utilities/make-initializable.js start line: 18 end line: 22 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6176 unit: constructor() file: client/client/modules/render/heatmap/utilities/trie.js start line: 21 end line: 33 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6177 unit: constructor() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 10 end line: 14 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 6178 unit: static fromColorConfigurations() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 280 end line: 284 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6179 unit: detachDispatcher() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 152 end line: 156 size: 5 LOC McCabe index: 2 number of parameters: 0 id: 6180 unit: displayTooltip() file: client/client/modules/render/variant-render/renderers/base-renderer.js start line: 45 end line: 49 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 6181 unit: onDragStart() file: client/client/modules/render/variant-render/renderers/interaction/drag-manager.js start line: 45 end line: 49 size: 5 LOC McCabe index: 1 number of parameters: 1 id: 6182 unit: constructor() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 68 end line: 72 size: 5 LOC McCabe index: 1 number of parameters: 6 id: 6183 unit: getConfig() file: client/client/modules/render/variant-render/variant-renderer.js start line: 153 end line: 157 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6184 unit: export function useGenomicsColumns() file: export-templates/target-identification/src/sections/comparative-genomics/columns.ts start line: 15 end line: 19 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6185 unit: export function useSequencesColumns() file: export-templates/target-identification/src/sections/sequences/columns.ts start line: 14 end line: 18 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 6186 unit: export function useKnownDrugs() file: export-templates/target-identification/src/model/main.ts start line: 72 end line: 76 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6187 unit: export function useAssociatedDiseases() file: export-templates/target-identification/src/model/main.ts start line: 78 end line: 82 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6188 unit: export function useStructuresData() file: export-templates/target-identification/src/model/main.ts start line: 122 end line: 126 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6189 unit: function createSorter() file: export-templates/target-identification/src/model/sorted-data.ts start line: 60 end line: 64 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 6190 unit: function getValueFn() file: export-templates/target-identification/src/model/filtered-data.ts start line: 53 end line: 57 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 6191 unit: public static void main() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/Application.java start line: 301 end line: 304 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6192 unit: public String formatHeader() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BlastDatabase.java start line: 79 end line: 82 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6193 unit: public ProjectItem() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/ProjectItem.java start line: 45 end line: 48 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6194 unit: public String formatHeader() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionsContainer.java start line: 75 end line: 78 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6195 unit: public String formatHeader() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/lineage/LineageTree.java start line: 89 end line: 92 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6196 unit: public String formatHeader() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/SpeciesEntity.java start line: 87 end line: 90 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6197 unit: public NgbUser() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/NgbUser.java start line: 57 end line: 60 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6198 unit: public String formatHeader() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/NgbUser.java start line: 94 end line: 97 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6199 unit: public String formatHeader() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/pathway/NGBPathway.java start line: 88 end line: 91 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6200 unit: public Role() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Role.java start line: 52 end line: 55 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6201 unit: public Role() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Role.java start line: 57 end line: 60 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6202 unit: public Role() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Role.java start line: 62 end line: 65 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6203 unit: public String formatItem() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Role.java start line: 96 end line: 99 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6204 unit: public String formatHeader() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Role.java start line: 102 end line: 105 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6205 unit: public String formatHeader() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/heatmap/Heatmap.java start line: 93 end line: 96 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6206 unit: public static BiologicalDataItemResourceType translateRequestType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItemResourceType.java start line: 77 end line: 80 size: 4 LOC McCabe index: 3 number of parameters: 1 id: 6207 unit: public String formatHeader() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/coverage/BamCoverage.java start line: 82 end line: 85 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6208 unit: public String formatHeader() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/pdb/PdbFile.java start line: 87 end line: 90 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6209 unit: public void parseAndVerifyArguments() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/simple/SetServerCommandHandler.java start line: 39 end line: 42 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6210 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/simple/SetServerCommandHandler.java start line: 45 end line: 48 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6211 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/simple/SetTokenCommandHandler.java start line: 54 end line: 57 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6212 unit: private HttpPost prepareHttpPost() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/SortHandler.java start line: 149 end line: 152 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6213 unit: private String getUrl() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/UrlGeneratorHandler.java start line: 133 end line: 136 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6214 unit: private UrlRequest() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/UrlGeneratorHandler.java start line: 142 end line: 145 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6215 unit: protected void parseAnnotationType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/heatmap/HeatmapLabelAnnotationHandler.java start line: 39 end line: 42 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6216 unit: private static Map deSerialize() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/pdb/PdbFileRegistrationHandler.java start line: 95 end line: 98 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6217 unit: protected AbstractHTTPCommandHandler() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 147 end line: 150 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6218 unit: protected HttpRequestBase getRequest() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 182 end line: 185 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6219 unit: private int mergeMasks() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/GrantPermissionHandler.java start line: 211 end line: 214 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6220 unit: public int run() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandManager.java start line: 95 end line: 98 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6221 unit: public LookupStrategy lookupStrategy() file: server/catgenome/src/main/java/com/epam/catgenome/app/AclSecurityConfiguration.java start line: 127 end line: 130 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6222 unit: public AclCache aclCache() file: server/catgenome/src/main/java/com/epam/catgenome/app/AclSecurityConfiguration.java start line: 148 end line: 151 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6223 unit: public void startupLoggingListener() file: server/catgenome/src/main/java/com/epam/catgenome/app/Application.java start line: 68 end line: 71 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6224 unit: public void configureAsyncSupport() file: server/catgenome/src/main/java/com/epam/catgenome/app/AppMVCConfiguration.java start line: 90 end line: 93 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6225 unit: public void configurePathMatch() file: server/catgenome/src/main/java/com/epam/catgenome/app/AppMVCConfiguration.java start line: 130 end line: 133 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6226 unit: protected void configure() file: server/catgenome/src/main/java/com/epam/catgenome/app/JWTSecurityConfiguration.java start line: 90 end line: 93 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6227 unit: public SAMLLogoutProcessingFilter samlLogoutProcessingFilter() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 487 end line: 490 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6228 unit: public NggbIntervalTreeMap() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 50 end line: 53 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6229 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/util/FileFormat.java start line: 41 end line: 44 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6230 unit: static String normalizeUrl() file: server/catgenome/src/main/java/com/epam/catgenome/util/QueryUtils.java start line: 38 end line: 41 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6231 unit: public static String combineIupacRegex() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/IupacRegexConverter.java start line: 43 end line: 46 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6232 unit: public final void write() file: server/catgenome/src/main/java/com/epam/catgenome/util/PositionalOutputStream.java start line: 59 end line: 62 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6233 unit: public final void write() file: server/catgenome/src/main/java/com/epam/catgenome/util/PositionalOutputStream.java start line: 65 end line: 68 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6234 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/util/PositionalOutputStream.java start line: 76 end line: 79 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6235 unit: public AzureBlobInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobInputStream.java start line: 38 end line: 41 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6236 unit: public InputStream loadFrom() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 180 end line: 183 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6237 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 123 end line: 126 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6238 unit: private static File checkPath() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 190 end line: 193 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6239 unit: public static boolean isFullyOnTrack() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 333 end line: 336 size: 4 LOC McCabe index: 4 number of parameters: 2 id: 6240 unit: public static Chromosome getFromChromosomeMap() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 346 end line: 349 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 6241 unit: public static boolean chromosomeMapContains() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 359 end line: 362 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 6242 unit: public static Map makeChromosomeMap() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 444 end line: 447 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6243 unit: public static String getUrlWithoutTrailingSlash() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 449 end line: 452 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6244 unit: public static String serialize() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 527 end line: 530 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6245 unit: public static String serialize() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 533 end line: 536 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6246 unit: public static boolean validateReadParams() file: server/catgenome/src/main/java/com/epam/catgenome/util/BamUtil.java start line: 196 end line: 199 size: 4 LOC McCabe index: 3 number of parameters: 4 id: 6247 unit: private static boolean validDownsempleParams() file: server/catgenome/src/main/java/com/epam/catgenome/util/BamUtil.java start line: 219 end line: 222 size: 4 LOC McCabe index: 5 number of parameters: 2 id: 6248 unit: public boolean add() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 213 end line: 216 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6249 unit: public static synchronized S3Client configure() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 83 end line: 86 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6250 unit: private String replaceSchema() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 206 end line: 209 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6251 unit: protected AbstractFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 146 end line: 149 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6252 unit: public TPair64() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 92 end line: 95 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6253 unit: public TPair64() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 97 end line: 100 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6254 unit: public TabixReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 156 end line: 159 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6255 unit: public TabixReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 165 end line: 168 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6256 unit: public int chr2tid() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 369 end line: 372 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6257 unit: public final void writeShort() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 117 end line: 120 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6258 unit: public final void writeChar() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 127 end line: 131 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6259 unit: public TabixLineReaderIterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 420 end line: 423 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6260 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbSeekableStreamFactory.java start line: 49 end line: 52 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6261 unit: public void commence() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/RestAuthenticationEntryPoint.java start line: 42 end line: 45 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6262 unit: public void eraseCredentials() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtAuthenticationToken.java start line: 67 end line: 70 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6263 unit: private Long fetchUserIdFromToken() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtTokenVerifier.java start line: 96 end line: 99 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6264 unit: public final void setLookupObjectIdentitiesWhereClause() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 476 end line: 479 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6265 unit: public AclSecuredEntry setPermissions() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermissionSecurityService.java start line: 51 end line: 54 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6266 unit: public boolean isOwner() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 212 end line: 215 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6267 unit: public boolean isOwner() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 217 end line: 220 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6268 unit: public boolean isAdmin() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 222 end line: 225 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6269 unit: public Integer getPermissionsMask() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 227 end line: 230 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6270 unit: public List getSids() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 242 end line: 245 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6271 unit: public PermissionGrantingStrategyImpl() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionGrantingStrategyImpl.java start line: 17 end line: 20 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6272 unit: public JdbcMutableAclServiceImpl() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 56 end line: 59 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6273 unit: public void deleteSidById() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 113 end line: 116 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6274 unit: public Sid createOrGetSid() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 119 end line: 122 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 6275 unit: public Long getSidId() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 130 end line: 133 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 6276 unit: public Integer loadEntriesBySidsCount() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 172 end line: 175 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6277 unit: public void setMaskForList() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/aspect/AclAspect.java start line: 131 end line: 134 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6278 unit: public boolean hasPermissionOnTargetGenes() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 225 end line: 228 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6279 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermission.java start line: 72 end line: 75 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6280 unit: public AclPermission() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermission.java start line: 101 end line: 104 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6281 unit: public AclPermission getDenyPermission() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermission.java start line: 106 end line: 109 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6282 unit: public static boolean permissionIsNotDenied() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 76 end line: 79 size: 4 LOC McCabe index: 2 number of parameters: 3 id: 6283 unit: public static boolean permissionIsNotDenied() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 81 end line: 84 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6284 unit: public static boolean containsPermission() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 86 end line: 89 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 6285 unit: public static boolean containsPermission() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 91 end line: 94 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 6286 unit: private static boolean containsOppositeMask() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 96 end line: 99 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6287 unit: public void setSamlLogger() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/OptionalSAMLLogoutFilter.java start line: 206 end line: 209 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6288 unit: public void setProfile() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/OptionalSAMLLogoutFilter.java start line: 217 end line: 220 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6289 unit: public void setContextProvider() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/OptionalSAMLLogoutFilter.java start line: 228 end line: 231 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6290 unit: public void setFilterProcessesUrl() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/OptionalSAMLLogoutFilter.java start line: 249 end line: 252 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6291 unit: public SAMLContextProviderCustomSignKey() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLContextProviderCustomSignKey.java start line: 48 end line: 51 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6292 unit: public Track() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Track.java start line: 70 end line: 73 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6293 unit: public SampledTrack() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/SampledTrack.java start line: 68 end line: 71 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6294 unit: public Block() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Block.java start line: 56 end line: 59 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6295 unit: public Block() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Block.java start line: 65 end line: 68 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6296 unit: public AclSid() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AclSid.java start line: 40 end line: 43 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6297 unit: public AbstractSecuredEntity() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AbstractSecuredEntity.java start line: 44 end line: 47 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6298 unit: public AbstractSecuredEntity() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AbstractSecuredEntity.java start line: 49 end line: 52 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6299 unit: public AclPermissionEntry() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AclPermissionEntry.java start line: 41 end line: 44 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6300 unit: public NgbUser() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/NgbUser.java start line: 64 end line: 67 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6301 unit: public Wig() file: server/catgenome/src/main/java/com/epam/catgenome/entity/wig/Wig.java start line: 50 end line: 53 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6302 unit: public NgbSamTagAndValue() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/NgbSamTagAndValue.java start line: 19 end line: 22 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6303 unit: public BasePosition() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BasePosition.java start line: 59 end line: 62 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6304 unit: public BamTrack() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrack.java start line: 65 end line: 68 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6305 unit: public BaseCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 55 end line: 58 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6306 unit: public BaseCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 60 end line: 63 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6307 unit: public ProteinSequenceEntry() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 60 end line: 63 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6308 unit: public void setProteinSequences() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/MrnaProteinSequenceVariants.java start line: 58 end line: 61 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6309 unit: public Role() file: server/catgenome/src/main/java/com/epam/catgenome/entity/user/Role.java start line: 47 end line: 50 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6310 unit: public Role() file: server/catgenome/src/main/java/com/epam/catgenome/entity/user/Role.java start line: 52 end line: 55 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6311 unit: public Role() file: server/catgenome/src/main/java/com/epam/catgenome/entity/user/Role.java start line: 57 end line: 60 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6312 unit: public OrderBy() file: server/catgenome/src/main/java/com/epam/catgenome/entity/AbstractFilterForm.java start line: 56 end line: 59 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6313 unit: public GeneTranscript() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneTranscript.java start line: 49 end line: 52 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6314 unit: public List getFileIds() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 316 end line: 319 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6315 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/ProjectItem.java start line: 58 end line: 61 size: 4 LOC McCabe index: 3 number of parameters: 1 id: 6316 unit: public FilterSection() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 445 end line: 448 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6317 unit: public void setInfoItemMap() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterInfo.java start line: 49 end line: 52 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6318 unit: public VcfSample() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfSample.java start line: 42 end line: 45 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6319 unit: public InfoField() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/Variation.java start line: 85 end line: 88 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6320 unit: public Filter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/Filter.java start line: 43 end line: 46 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6321 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ExternalDBType.java start line: 42 end line: 45 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6322 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ExternalDB.java start line: 41 end line: 44 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6323 unit: public Group() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/Group.java start line: 14 end line: 17 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6324 unit: public static FeatureType forValue() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/FeatureType.java start line: 175 end line: 178 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6325 unit: public static BiologicalDataItemResourceType translateRequestType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItemResourceType.java start line: 114 end line: 117 size: 4 LOC McCabe index: 3 number of parameters: 1 id: 6326 unit: public Sequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Sequence.java start line: 59 end line: 62 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6327 unit: public Sequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Sequence.java start line: 68 end line: 71 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6328 unit: public Sequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Sequence.java start line: 73 end line: 76 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6329 unit: public Chromosome() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Chromosome.java start line: 70 end line: 73 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6330 unit: public Reference() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Reference.java start line: 73 end line: 76 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6331 unit: public void createBedFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bed/BedFileDao.java start line: 81 end line: 84 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6332 unit: public Person loadPersonById() file: server/catgenome/src/main/java/com/epam/catgenome/dao/person/PersonDao.java start line: 78 end line: 81 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6333 unit: public void createWigFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/wig/WigFileDao.java start line: 61 end line: 64 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6334 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamCoverageDao.java start line: 65 end line: 68 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6335 unit: public void delete() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamCoverageDao.java start line: 74 end line: 77 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6336 unit: public List loadByBamId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamCoverageDao.java start line: 88 end line: 91 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6337 unit: public List findGroups() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 200 end line: 203 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6338 unit: public List loadUsersByGroup() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 205 end line: 208 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6339 unit: public List loadBiologicalDataItems() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 174 end line: 177 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6340 unit: public void setLoadBiologicalDataItemsByNameStrictQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 688 end line: 691 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6341 unit: public void setLoadBiologicalDataItemsByNameCaseInsensitiveQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 704 end line: 707 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6342 unit: public void createGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/gene/GeneFileDao.java start line: 88 end line: 91 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6343 unit: public void update() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 72 end line: 75 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6344 unit: public List findByProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 105 end line: 108 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6345 unit: static RowMapper getContentRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 135 end line: 138 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6346 unit: public List loadTopLevelProjectsOrderByLastOpened() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 145 end line: 148 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6347 unit: public List loadProjectsByBioDataItemId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 238 end line: 241 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6348 unit: public List loadProjectItemsByProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 285 end line: 288 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6349 unit: public void deleteProjectNotes() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 415 end line: 418 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6350 unit: public void createVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/vcf/VcfFileDao.java start line: 96 end line: 99 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6351 unit: public void deleteVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/vcf/VcfFileDao.java start line: 107 end line: 110 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6352 unit: public void createBucket() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bucket/BucketDao.java start line: 70 end line: 73 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6353 unit: public List loadAllBucket() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bucket/BucketDao.java start line: 80 end line: 83 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6354 unit: public List loadLineageTreeNodes() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeNodeDao.java start line: 93 end line: 96 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6355 unit: public List loadLineageTreeNodesByReference() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeNodeDao.java start line: 102 end line: 105 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6356 unit: public List loadLineageTreeNodesById() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeNodeDao.java start line: 111 end line: 114 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6357 unit: public List loadLineageTrees() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeDao.java start line: 114 end line: 117 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6358 unit: public List loadLineageTreeEdges() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeEdgeDao.java start line: 96 end line: 99 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6359 unit: public List loadLineageTreeEdgesById() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeEdgeDao.java start line: 105 end line: 108 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6360 unit: public BlastTask loadTaskById() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 109 end line: 112 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6361 unit: public List loadAllTasks() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 114 end line: 117 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6362 unit: public long getTasksCount() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 119 end line: 122 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6363 unit: public void deleteTasks() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 140 end line: 143 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6364 unit: public void deleteOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 186 end line: 189 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6365 unit: public void deleteExclOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 207 end line: 210 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6366 unit: public void deleteParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 239 end line: 242 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6367 unit: public List loadDatabases() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastDatabaseDao.java start line: 91 end line: 94 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6368 unit: protected TopDocs performSearch() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/searcher/AbstractIndexSearcher.java start line: 108 end line: 111 size: 4 LOC McCabe index: 1 number of parameters: 5 id: 6369 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedStringField.java start line: 44 end line: 47 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6370 unit: public SortedStringField() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedStringField.java start line: 49 end line: 52 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 6371 unit: public SortedStringField() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedStringField.java start line: 54 end line: 57 size: 4 LOC McCabe index: 3 number of parameters: 3 id: 6372 unit: public IndexSearchResult searchFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 277 end line: 280 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6373 unit: public IndexSearchResult searchLuceneIndexForProject() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 379 end line: 382 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6374 unit: private void createIndexEntries() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 1140 end line: 1143 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6375 unit: public VcfIndexEntry build() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 237 end line: 240 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6376 unit: public void clear() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 402 end line: 405 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6377 unit: public String findFieldValue() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/AbstractDocumentBuilder.java start line: 296 end line: 299 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 6378 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupDao.java start line: 108 end line: 111 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6379 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneDomainDao.java start line: 66 end line: 69 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6380 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneDomainDao.java start line: 98 end line: 101 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6381 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneDescDao.java start line: 98 end line: 101 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6382 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneAliasDao.java start line: 66 end line: 69 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6383 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneAliasDao.java start line: 98 end line: 101 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6384 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologDatabaseDao.java start line: 83 end line: 86 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6385 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupGeneDao.java start line: 79 end line: 82 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6386 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupGeneDao.java start line: 111 end line: 114 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6387 unit: public List loadGroupIds() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupGeneDao.java start line: 116 end line: 119 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6388 unit: public List loadAllGroupIds() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupGeneDao.java start line: 121 end line: 124 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6389 unit: public void savePathway() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayDao.java start line: 71 end line: 74 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6390 unit: public List loadAllPathways() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayDao.java start line: 104 end line: 107 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6391 unit: public List loadPathwayOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayOrganismDao.java start line: 92 end line: 95 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6392 unit: public void createSegFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 99 end line: 102 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6393 unit: public void deleteSegFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 122 end line: 125 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6394 unit: public Heatmap loadHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 120 end line: 123 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6395 unit: public void update() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pdb/PdbFileDao.java start line: 92 end line: 95 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6396 unit: public PdbFile load() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pdb/PdbFileDao.java start line: 102 end line: 105 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6397 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pdb/PdbFileDao.java start line: 121 end line: 124 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6398 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pdb/PdbFileDao.java start line: 126 end line: 129 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6399 unit: public long getTotalCount() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pdb/PdbFileDao.java start line: 131 end line: 134 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6400 unit: private static String serialize() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pdb/PdbFileDao.java start line: 186 end line: 189 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6401 unit: private static Map deSerialize() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pdb/PdbFileDao.java start line: 192 end line: 195 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6402 unit: public void unregisterReferenceGenome() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 224 end line: 227 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6403 unit: public List loadAllReferenceGenomes() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 267 end line: 270 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6404 unit: public List loadAllFileByReferenceId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 327 end line: 330 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6405 unit: public Species saveSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/SpeciesDao.java start line: 56 end line: 59 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6406 unit: public Species updateSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/SpeciesDao.java start line: 62 end line: 65 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6407 unit: public NGBSession update() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 90 end line: 93 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6408 unit: public MessageHelper() file: server/catgenome/src/main/java/com/epam/catgenome/component/MessageHelper.java start line: 73 end line: 76 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6409 unit: public String getAlleles() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 84 end line: 87 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6410 unit: public String getMafSource() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 106 end line: 109 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6411 unit: public Result unregisterBedFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/bed/BedController.java start line: 100 end line: 103 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6412 unit: public Result getPatents() file: server/catgenome/src/main/java/com/epam/catgenome/controller/patents/PatentsController.java start line: 128 end line: 131 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6413 unit: public Result deleteAllPermissions() file: server/catgenome/src/main/java/com/epam/catgenome/controller/security/PermissionController.java start line: 87 end line: 90 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6414 unit: public Result getPermissions() file: server/catgenome/src/main/java/com/epam/catgenome/controller/security/PermissionController.java start line: 100 end line: 103 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6415 unit: public Result changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/controller/security/PermissionController.java start line: 113 end line: 116 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6416 unit: public Result assignRole() file: server/catgenome/src/main/java/com/epam/catgenome/controller/person/RoleController.java start line: 87 end line: 90 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6417 unit: public Result removeRole() file: server/catgenome/src/main/java/com/epam/catgenome/controller/person/RoleController.java start line: 101 end line: 104 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6418 unit: public Result createRole() file: server/catgenome/src/main/java/com/epam/catgenome/controller/person/RoleController.java start line: 117 end line: 120 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6419 unit: public Result deleteUser() file: server/catgenome/src/main/java/com/epam/catgenome/controller/person/UserController.java start line: 155 end line: 158 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6420 unit: public Result unregisterWigFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/wig/WigController.java start line: 116 end line: 119 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6421 unit: public Result unregisterBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/bam/BamController.java start line: 163 end line: 166 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6422 unit: public final Result findFileBiBioItemId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/dataitem/DataItemController.java start line: 127 end line: 130 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6423 unit: public final Result generateDownloadUrl() file: server/catgenome/src/main/java/com/epam/catgenome/controller/dataitem/DataItemController.java start line: 173 end line: 176 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6424 unit: public ProteinSequenceVariationQuery() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/ProteinSequenceVariationQuery.java start line: 58 end line: 61 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6425 unit: public Result registerGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/GeneController.java start line: 121 end line: 124 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6426 unit: public Result unregisterGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/GeneController.java start line: 130 end line: 133 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6427 unit: public Result getPBDentity() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/GeneController.java start line: 235 end line: 238 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6428 unit: public Result constructAminoAcidSequence() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/GeneController.java start line: 299 end line: 302 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6429 unit: public Result loadGeneFeatureByUid() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/GeneController.java start line: 416 end line: 419 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6430 unit: public Result moveProject() file: server/catgenome/src/main/java/com/epam/catgenome/controller/project/ProjectController.java start line: 199 end line: 202 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6431 unit: public Result unregisterVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vcf/VcfController.java start line: 137 end line: 140 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6432 unit: public Result loadDirectoryContents() file: server/catgenome/src/main/java/com/epam/catgenome/controller/UtilsController.java start line: 136 end line: 139 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6433 unit: public Result isFilesBrowsingAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/controller/UtilsController.java start line: 150 end line: 153 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6434 unit: public Result isUrlsBrowsingAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/controller/UtilsController.java start line: 183 end line: 186 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6435 unit: public Result loadLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/controller/lineage/LineageTreeController.java start line: 78 end line: 81 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6436 unit: public Result createLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/controller/lineage/LineageTreeController.java start line: 103 end line: 106 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6437 unit: public Result deleteLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/controller/lineage/LineageTreeController.java start line: 116 end line: 119 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6438 unit: public Result getProteinPatents() file: server/catgenome/src/main/java/com/epam/catgenome/controller/compound/CompoundController.java start line: 56 end line: 59 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6439 unit: public Result importNCBIGeneIdsData() file: server/catgenome/src/main/java/com/epam/catgenome/controller/externaldb/ExternalDBController.java start line: 415 end line: 418 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6440 unit: public Result importNCBIGenesInfoData() file: server/catgenome/src/main/java/com/epam/catgenome/controller/externaldb/ExternalDBController.java start line: 429 end line: 432 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6441 unit: public Result deleteTasks() file: server/catgenome/src/main/java/com/epam/catgenome/controller/blast/BlastController.java start line: 157 end line: 160 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6442 unit: public Result createTask() file: server/catgenome/src/main/java/com/epam/catgenome/controller/blast/BlastController.java start line: 170 end line: 173 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6443 unit: public Result createDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/controller/blast/BlastController.java start line: 183 end line: 186 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6444 unit: public Result cancelTask() file: server/catgenome/src/main/java/com/epam/catgenome/controller/blast/BlastController.java start line: 196 end line: 199 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6445 unit: public Result deleteTask() file: server/catgenome/src/main/java/com/epam/catgenome/controller/blast/BlastController.java start line: 209 end line: 212 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6446 unit: public Result saveDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/controller/blast/BlastDatabaseController.java start line: 62 end line: 65 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6447 unit: public Result deleteDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/controller/blast/BlastDatabaseController.java start line: 100 end line: 103 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6448 unit: public Result loadPathway() file: server/catgenome/src/main/java/com/epam/catgenome/controller/pathway/PathwayController.java start line: 70 end line: 73 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6449 unit: public Result registerPathway() file: server/catgenome/src/main/java/com/epam/catgenome/controller/pathway/PathwayController.java start line: 124 end line: 127 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6450 unit: public Result registerBioPAX() file: server/catgenome/src/main/java/com/epam/catgenome/controller/pathway/PathwayController.java start line: 137 end line: 140 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6451 unit: public Result deletePathway() file: server/catgenome/src/main/java/com/epam/catgenome/controller/pathway/PathwayController.java start line: 150 end line: 153 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6452 unit: public Result unregisterSegFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/seg/SegController.java start line: 92 end line: 95 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6453 unit: public Result loadHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/controller/heatmap/HeatmapController.java start line: 67 end line: 70 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6454 unit: public Result getTree() file: server/catgenome/src/main/java/com/epam/catgenome/controller/heatmap/HeatmapController.java start line: 139 end line: 142 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6455 unit: public Result deleteHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/controller/heatmap/HeatmapController.java start line: 192 end line: 195 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6456 unit: public Result getFieldInfo() file: server/catgenome/src/main/java/com/epam/catgenome/controller/filter/FilterController.java start line: 93 end line: 96 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6457 unit: public Result getFasta() file: server/catgenome/src/main/java/com/epam/catgenome/controller/sequence/SequenceController.java start line: 61 end line: 64 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6458 unit: public Result delete() file: server/catgenome/src/main/java/com/epam/catgenome/controller/pdb/PdbFileController.java start line: 129 end line: 132 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6459 unit: public Result saveBookmark() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/BookmarkController.java start line: 88 end line: 91 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6460 unit: public Result deleteBookmark() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/BookmarkController.java start line: 95 end line: 98 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6461 unit: public Result registerFastaFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 294 end line: 297 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6462 unit: public Result updateReferenceGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 301 end line: 304 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6463 unit: public Result unregisterFastaFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 328 end line: 331 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6464 unit: public Result updateSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 384 end line: 387 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6465 unit: public Result updateProteinSeq() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 391 end line: 394 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6466 unit: public void createBiologicalDataItem() file: server/catgenome/src/main/java/com/epam/catgenome/manager/BiologicalDataItemManager.java start line: 92 end line: 95 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6467 unit: public MafFile create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafFileManager.java start line: 73 end line: 76 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6468 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/VerificationStatus.java start line: 39 end line: 42 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6469 unit: public TreeListMultiset() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 49 end line: 52 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6470 unit: public void init() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TaskExecutorService.java start line: 78 end line: 81 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6471 unit: public Collection getFormats() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedManager.java start line: 648 end line: 651 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6472 unit: public BedFile create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedFileManager.java start line: 78 end line: 81 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6473 unit: public NggbBedCodec() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 75 end line: 78 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6474 unit: public Track loadFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedSecurityService.java start line: 67 end line: 70 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6475 unit: public String getSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/GCPPaLM2.java start line: 89 end line: 92 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6476 unit: public CustomLLMApiClient() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/CustomLLMApiClient.java start line: 42 end line: 45 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6477 unit: public String getSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/CustomLLMHandler.java start line: 74 end line: 77 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6478 unit: public IndexSearchResult searchFeaturesByReference() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexSecurityService.java start line: 70 end line: 73 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6479 unit: public IndexSearchResult searchFeaturesByReference() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexSecurityService.java start line: 76 end line: 79 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6480 unit: public Set searchGenesInVcfFiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexSecurityService.java start line: 83 end line: 86 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6481 unit: public IndexSearchResult searchFeaturesInProject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexSecurityService.java start line: 109 end line: 112 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6482 unit: public IndexSearchResult filterVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexSecurityService.java start line: 116 end line: 119 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6483 unit: public Set searchGenesInVcfFilesInProject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexSecurityService.java start line: 128 end line: 131 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6484 unit: public GeneFilterInfo getAvailableFieldsToSearch() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexSecurityService.java start line: 138 end line: 141 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6485 unit: public Set getAvailableFieldValues() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexSecurityService.java start line: 143 end line: 146 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6486 unit: public Chromosome validateTrack() file: server/catgenome/src/main/java/com/epam/catgenome/manager/TrackHelper.java start line: 155 end line: 159 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6487 unit: public static void validateHistogramTrack() file: server/catgenome/src/main/java/com/epam/catgenome/manager/TrackHelper.java start line: 193 end line: 196 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6488 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/FacadeWigManager.java start line: 109 end line: 112 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6489 unit: public AbstractWigProcessor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/AbstractWigProcessor.java start line: 54 end line: 57 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6490 unit: boolean dontNeedToUseDownsampling() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/AbstractWigProcessor.java start line: 59 end line: 62 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 6491 unit: public RightSAMRecordFilter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/filters/RightSAMRecordFilter.java start line: 48 end line: 51 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6492 unit: public LeftSAMRecordFilter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/filters/LeftSAMRecordFilter.java start line: 48 end line: 51 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6493 unit: public FullResultSifter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/FullResultSifter.java start line: 51 end line: 56 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6494 unit: public List getDownsampleCoverageResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/StandardSAMRecordSifter.java start line: 124 end line: 127 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6495 unit: public int getFilteredReadsCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/StandardSAMRecordSifter.java start line: 130 end line: 133 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6496 unit: public SamReader makeSamReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 480 end line: 483 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6497 unit: public void sendBamTrackToEmitter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamSecurityService.java start line: 78 end line: 81 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6498 unit: public void sendBamTrackToEmitterFromUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamSecurityService.java start line: 84 end line: 87 size: 4 LOC McCabe index: 1 number of parameters: 5 id: 6499 unit: private void sendBuffer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamTrackEmitter.java start line: 136 end line: 139 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6500 unit: private void checkItemName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemManager.java start line: 276 end line: 279 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6501 unit: public BiologicalDataItemFile loadItemFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemSecurityService.java start line: 88 end line: 91 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6502 unit: public BiologicalDataItemDownloadUrl generateDownloadUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemSecurityService.java start line: 94 end line: 97 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6503 unit: public Track loadProteinSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceSecurityService.java start line: 65 end line: 68 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6504 unit: public Track loadProteinSequenceWithVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/protein/ProteinSequenceSecurityService.java start line: 71 end line: 74 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6505 unit: public UserManager() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 61 end line: 64 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6506 unit: public boolean checkUserByGroup() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 234 end line: 237 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6507 unit: public UserSecurityService() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserSecurityService.java start line: 55 end line: 58 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6508 unit: public Role loadRoleByName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 162 end line: 165 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6509 unit: public GffReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GffReader.java start line: 70 end line: 73 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6510 unit: public GtfReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GtfReader.java start line: 63 end line: 66 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6511 unit: public GeneFile create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneFileManager.java start line: 87 end line: 90 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6512 unit: public boolean geneFileExists() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneFileManager.java start line: 172 end line: 175 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6513 unit: public static boolean belongsToChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 270 end line: 273 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 6514 unit: public static Gene getCanonical() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 301 end line: 304 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6515 unit: public Track loadGenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneTrackManager.java start line: 101 end line: 104 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 6516 unit: public Track loadGenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneTrackManager.java start line: 169 end line: 172 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6517 unit: public GffCodec() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffCodec.java start line: 113 end line: 116 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6518 unit: public static StrandSerializable forValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/StrandSerializable.java start line: 64 end line: 67 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6519 unit: private Activity buildAttributeUpdateActivity() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneActivityService.java start line: 149 end line: 152 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6520 unit: public Track loadGenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 91 end line: 94 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6521 unit: public List convertGeneTrackForClient() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 102 end line: 105 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6522 unit: public Track loadGenesTranscript() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 108 end line: 111 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6523 unit: public Gene getNextOrPreviousFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 124 end line: 127 size: 4 LOC McCabe index: 1 number of parameters: 5 id: 6524 unit: public Gff3Writer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 42 end line: 45 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6525 unit: private void writeWithNewLine() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 55 end line: 58 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6526 unit: public void addComment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 177 end line: 180 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6527 unit: protected Object decode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Codec.java start line: 52 end line: 55 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6528 unit: private static BufferedReader getReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsToGffConvertor.java start line: 85 end line: 88 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6529 unit: public void reIndexFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 166 end line: 169 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6530 unit: public List loadGeneActivity() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 924 end line: 927 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6531 unit: private boolean isFeatureCounts() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GffManager.java start line: 1171 end line: 1174 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6532 unit: public Project removeProjectItem() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 429 end line: 432 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6533 unit: public void hideProjectItem() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 441 end line: 444 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6534 unit: private void attachMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 557 end line: 560 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6535 unit: private void checkProjectName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 705 end line: 708 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6536 unit: public ProjectDescription upsertProjectDescription() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 123 end line: 126 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6537 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/AbstractVcfReader.java start line: 59 end line: 62 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6538 unit: public VcfFileReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 96 end line: 99 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6539 unit: public VcfGa4ghReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfGa4ghReader.java start line: 86 end line: 89 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6540 unit: private boolean isExtendedInfoLine() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 924 end line: 927 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6541 unit: public Track loadVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfSecurityService.java start line: 81 end line: 84 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6542 unit: public Variation loadVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfSecurityService.java start line: 99 end line: 102 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6543 unit: public VcfFilterInfo getFiltersInfo() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfSecurityService.java start line: 115 end line: 118 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6544 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/genepred/GenePredUtils.java start line: 38 end line: 41 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6545 unit: public Set searchGenesInVcfFiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 201 end line: 204 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6546 unit: public IndexSearchResult filterVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 337 end line: 340 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6547 unit: private List getGenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 495 end line: 498 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6548 unit: private static List deserializeGenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 550 end line: 553 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6549 unit: private static String serializeGenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 555 end line: 558 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6550 unit: public SearchResult searchHomologenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneSecurityService.java start line: 47 end line: 50 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6551 unit: public SearchResult getProteinPatents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/PatentsSecurityService.java start line: 52 end line: 55 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6552 unit: public SearchResult getDrugPatents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/PatentsSecurityService.java start line: 63 end line: 66 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6553 unit: public List getDrugPatents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/PatentsSecurityService.java start line: 69 end line: 72 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6554 unit: public NCBIEnsemblIdsManager() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIEnsemblIdsManager.java start line: 62 end line: 65 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6555 unit: public String link() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 120 end line: 123 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6556 unit: public String searchById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 156 end line: 159 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6557 unit: public String searchById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 161 end line: 164 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6558 unit: public String fetchXmlById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 189 end line: 192 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6559 unit: public String fetchTextById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 194 end line: 197 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6560 unit: public String fetchJsonById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 199 end line: 202 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6561 unit: private static boolean isSmiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pug/NCBIPugManager.java start line: 246 end line: 249 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6562 unit: public String getResultFromURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/HttpDataManager.java start line: 135 end line: 138 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6563 unit: public String getResultFromURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/HttpDataManager.java start line: 140 end line: 143 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6564 unit: public List searchOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomySecurityService.java start line: 43 end line: 46 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6565 unit: private String getScientificName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 196 end line: 199 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6566 unit: private List getSynonyms() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 202 end line: 205 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6567 unit: private String getCommonName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 208 end line: 211 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6568 unit: public void saveData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homolog/HomologManager.java start line: 215 end line: 218 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6569 unit: public SearchResult searchHomolog() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homolog/HomologSecurityService.java start line: 47 end line: 50 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6570 unit: public void importHomologData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homolog/HomologSecurityService.java start line: 59 end line: 62 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6571 unit: public int getPublicationsCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/PubMedService.java start line: 129 end line: 132 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6572 unit: public String getSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/sequence/SequenceSecurityService.java start line: 54 end line: 57 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6573 unit: private String validateUniprotName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbDataManager.java start line: 151 end line: 154 size: 4 LOC McCabe index: 3 number of parameters: 1 id: 6574 unit: public BlastRequestResult getResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 210 end line: 213 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6575 unit: public Collection getGroupedResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 215 end line: 218 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6576 unit: public ResponseBody getRawResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 220 end line: 223 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6577 unit: private Map loadTaskParameters() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 270 end line: 273 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6578 unit: public BlastFeatureLocatable fetchCoordinates() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastUtilSecurityService.java start line: 42 end line: 45 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6579 unit: public AbstractIndexManager() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 63 end line: 66 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6580 unit: public Sort getDefaultSort() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 214 end line: 217 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6581 unit: private Sort getSortBySortInfo() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 301 end line: 304 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6582 unit: public BlockCompressedDataInputStream makeRefInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 588 end line: 591 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6583 unit: public BlockCompressedDataInputStream makeGCInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 602 end line: 605 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6584 unit: private DataOutputStream makeGCIndexOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 607 end line: 610 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6585 unit: private DataOutputStream makeRefIndexOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 612 end line: 615 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6586 unit: public DataInputStream makeGCIndexInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 626 end line: 629 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6587 unit: public DataInputStream makeRefIndexInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 640 end line: 643 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6588 unit: public void deleteDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2184 end line: 2187 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6589 unit: private void updateHeatmapLabels() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 361 end line: 364 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6590 unit: private static String getFileHeader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/ExportUtils.java start line: 70 end line: 73 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6591 unit: private String getQualifierByKey() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/GenbankManager.java start line: 203 end line: 206 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6592 unit: public Reference updateReferenceAnnotationFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 112 end line: 115 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6593 unit: public Track fillTrackWithMotifSearch() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 163 end line: 166 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6594 unit: public int getSequenceSize() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaIndex.java start line: 29 end line: 32 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6595 unit: public static boolean hasIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaUtils.java start line: 200 end line: 203 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6596 unit: static file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandReader.java start line: 73 end line: 76 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6597 unit: public CytobandRecord() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandRecord.java start line: 54 end line: 57 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6598 unit: private void putInHeap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataWriter.java start line: 191 end line: 194 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6599 unit: private List getAnnotationFilesByReferenceId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 204 end line: 207 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6600 unit: public List getReferenceAnnotationFiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 394 end line: 397 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6601 unit: public List getReferenceAnnotationFiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 400 end line: 403 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6602 unit: private void checkSizeOfMotifSearchResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 541 end line: 545 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6603 unit: public NGBSession load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/session/NGBSessionManager.java start line: 69 end line: 72 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6604 unit: public NGBSession delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/session/NGBSessionManager.java start line: 75 end line: 78 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6605 unit: public NGBSession update() file: server/catgenome/src/main/java/com/epam/catgenome/manager/session/NGBSessionManager.java start line: 81 end line: 84 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6606 unit: public HistogramReadingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/HistogramReadingException.java start line: 16 end line: 19 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6607 unit: updateBookmarks() file: client/client/dataServices/local/local-data-service.js start line: 60 end line: 63 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6608 unit: loadAllReference() file: client/client/dataServices/genome/genome-data-service.js start line: 20 end line: 23 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6609 unit: redirectToAuthentication() file: client/client/app/app.controller.js start line: 392 end line: 395 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6610 unit: setCurrentState() file: client/client/app/shared/heatmapContext/index.js start line: 148 end line: 151 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6611 unit: setTargetsFormActionsVisibility() file: client/client/app/shared/targetContext/index.js start line: 220 end line: 223 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6612 unit: getSelected() file: client/client/app/shared/selectionContext/index.js start line: 28 end line: 31 size: 4 LOC McCabe index: 3 number of parameters: 1 id: 6613 unit: setSelected() file: client/client/app/shared/selectionContext/index.js start line: 33 end line: 36 size: 4 LOC McCabe index: 3 number of parameters: 2 id: 6614 unit: clearSelection() file: client/client/app/shared/selectionContext/index.js start line: 64 end line: 67 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6615 unit: onTracksStateChanged() file: client/client/app/shared/selectionContext/index.js start line: 69 end line: 72 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6616 unit: emitGlobalEvent() file: client/client/app/shared/dispatcher/dispatcher.js start line: 32 end line: 35 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6617 unit: emitServiceError() file: client/client/app/shared/dispatcher/dispatcher.js start line: 59 end line: 62 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6618 unit: _preventDuplicate() file: client/client/app/shared/dispatcher/dispatcher.js start line: 75 end line: 78 size: 4 LOC McCabe index: 3 number of parameters: 1 id: 6619 unit: get layout() file: client/client/app/shared/dispatcher/protocol/state.js start line: 64 end line: 67 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6620 unit: get tracksState() file: client/client/app/shared/dispatcher/protocol/state.js start line: 77 end line: 80 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6621 unit: constructor() file: client/client/app/shared/dispatcher/events/dispatcher-event.js start line: 10 end line: 13 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6622 unit: link: function() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.directive.js start line: 6 end line: 132 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6623 unit: removeRoleFromGrid() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 81 end line: 84 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6624 unit: close() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 137 end line: 140 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6625 unit: cancel() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 142 end line: 145 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6626 unit: userAttributes: getUserAttributesString() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 96 end line: 99 size: 4 LOC McCabe index: 3 number of parameters: 1 id: 6627 unit: close() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 156 end line: 159 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6628 unit: cancel() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 161 end line: 164 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6629 unit: constructor() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 11 end line: 14 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6630 unit: constructor() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.service.js start line: 14 end line: 17 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6631 unit: constructor() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagement.controller.js start line: 10 end line: 13 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6632 unit: openMenu() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFile.controller.js start line: 21 end line: 24 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6633 unit: constructor() file: client/client/app/shared/components/ngbMainToolbar/ngbShareLink/ngbShareLink.controller.js start line: 12 end line: 16 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6634 unit: $onInit() file: client/client/app/shared/components/ngbMainToolbar/ngbToolWindows/ngbToolWindows.controller.js start line: 29 end line: 32 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6635 unit: toggle() file: client/client/app/shared/components/ngbMainToolbar/ngbToolWindows/ngbToolWindows.controller.js start line: 62 end line: 65 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6636 unit: _clearMessages() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 38 end line: 41 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6637 unit: constructor() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettings.controller.js start line: 10 end line: 13 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6638 unit: template: require() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettings.controller.js start line: 21 end line: 24 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6639 unit: setToDefaultCustomizations() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.controller.js start line: 85 end line: 88 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6640 unit: getSettings() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 30 end line: 33 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6641 unit: getDefaultSettings() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 43 end line: 46 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6642 unit: constructor() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.service.js start line: 13 end line: 16 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6643 unit: $onDestroy() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 91 end line: 94 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6644 unit: onInitLayout() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 96 end line: 99 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6645 unit: panelAdd() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 397 end line: 400 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6646 unit: constructor() file: client/client/app/shared/components/ngbGoldenLayout/ngbViewActions/ngbCloseAllTracks/ngbCloseAllTracks.controller.js start line: 10 end line: 13 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6647 unit: constructor() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.search.results.js start line: 6 end line: 19 size: 4 LOC McCabe index: 3 number of parameters: 2 id: 6648 unit: const mapItemFn = function() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.search.results.js start line: 13 end line: 16 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6649 unit: start: correctPosition() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/parse-coordinates.js start line: 151 end line: 154 size: 4 LOC McCabe index: 4 number of parameters: 2 id: 6650 unit: start: correctPosition() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/parse-coordinates.js start line: 184 end line: 187 size: 4 LOC McCabe index: 3 number of parameters: 2 id: 6651 unit: refresh() file: client/client/app/shared/components/ngbPagination/ngbPagination.controller.js start line: 21 end line: 24 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6652 unit: const callback = function() file: client/client/app/shared/components/ngbUiParts/ngbProjectTitle.component.js start line: 8 end line: 11 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6653 unit: constructor() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantDetails.controller.js start line: 9 end line: 12 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6654 unit: loadChromosomeData() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 68 end line: 71 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6655 unit: constructor() file: client/client/app/shared/components/ngbHeader/ngbShareLink/ngbShareLink.controller.js start line: 12 end line: 16 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6656 unit: hide() file: client/client/app/shared/components/widgets/ngbColorPicker/ngbColorPicker.controller.js start line: 37 end line: 40 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6657 unit: hidePickerContainer() file: client/client/app/shared/components/widgets/ngbColorPicker/ngbColorPicker.controller.js start line: 93 end line: 96 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6658 unit: showPickerContainer() file: client/client/app/shared/components/widgets/ngbColorPicker/ngbColorPicker.controller.js start line: 102 end line: 105 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6659 unit: async getDefaultTrackSettings() file: client/client/app/shared/projectContext/index.js start line: 835 end line: 838 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6660 unit: convertTracksStateFromJson() file: client/client/app/shared/projectContext/index.js start line: 847 end line: 871 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6661 unit: const onStart = function() file: client/client/app/shared/projectContext/index.js start line: 924 end line: 927 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6662 unit: const onFinish = function() file: client/client/app/shared/projectContext/index.js start line: 928 end line: 931 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6663 unit: changeVcfInfoFields() file: client/client/app/shared/projectContext/index.js start line: 1293 end line: 1296 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6664 unit: filterVariants() file: client/client/app/shared/projectContext/index.js start line: 1324 end line: 1327 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6665 unit: id: decodeURIComponent() file: client/client/app/shared/projectContext/index.js start line: 1692 end line: 1695 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6666 unit: $() file: client/client/app/shared/filter/filterList/ngbFilterList.scroller.js start line: 5 end line: 8 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6667 unit: $() file: client/client/app/shared/filter/filterList/ngbFilterList.scroller.js start line: 9 end line: 12 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6668 unit: _toggleSelected() file: client/client/app/shared/services/api.service.js start line: 585 end line: 589 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6669 unit: constructor() file: client/client/app/shared/lastActionRepeater/index.js start line: 9 end line: 12 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6670 unit: export default function Interceptor() file: client/client/app/app.interceptor.js start line: 2 end line: 16 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6671 unit: '': function() file: client/client/app/app.interceptor.js start line: 10 end line: 14 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6672 unit: template: require() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoSections/ngbProjectInfoSections.component.js start line: 4 end line: 8 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6673 unit: openMenu() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoSections/ngbProjectInfoSections.controller.js start line: 60 end line: 63 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6674 unit: get currentMode() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 33 end line: 36 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6675 unit: refreshProjectInfo() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 83 end line: 86 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6676 unit: get currentDescription() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 213 end line: 216 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6677 unit: _finishEditing() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 498 end line: 501 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6678 unit: constructor() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoEditNote/ngbProjectInfoEditNote.controller.js start line: 5 end line: 8 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6679 unit: tickFormat :() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantTypeDiagram/ngbVariantTypeDiagram.controller.js start line: 54 end line: 57 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6680 unit: get identificationTabIsShown() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 24 end line: 27 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6681 unit: get isTranslational() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 29 end line: 32 size: 4 LOC McCabe index: 3 number of parameters: 0 id: 6682 unit: get geneIdsOfInterest() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 55 end line: 58 size: 4 LOC McCabe index: 3 number of parameters: 0 id: 6683 unit: get translationalGeneIds() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 60 end line: 63 size: 4 LOC McCabe index: 3 number of parameters: 0 id: 6684 unit: refreshData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 50 end line: 53 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6685 unit: async searchDisease() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 134 end line: 137 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6686 unit: resetDrugsData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 283 end line: 286 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6687 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 112 end line: 115 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6688 unit: preventListFromClosing() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 57 end line: 60 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6689 unit: stopPreventListFromClosing() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 62 end line: 65 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6690 unit: resetFilters() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 179 end line: 182 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6691 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTablePagination/ngbDiseasesDrugsTablePagination.controller.js start line: 29 end line: 32 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6692 unit: preventListFromClosing() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbDiseasesTargetsFilterList.controller.js start line: 60 end line: 63 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6693 unit: stopPreventListFromClosing() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbDiseasesTargetsFilterList.controller.js start line: 65 end line: 68 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6694 unit: resetFilters() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbDiseasesTargetsFilterList.controller.js start line: 211 end line: 214 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6695 unit: resetFilters() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterInput/ngbDiseasesTargetsFilterInput.controller.js start line: 28 end line: 31 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6696 unit: async openMenu() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbTargetsTableMenu/ngbTargetsTableMenu.controller.js start line: 88 end line: 91 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6697 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 90 end line: 93 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6698 unit: showOthers() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 218 end line: 221 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6699 unit: showLess() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 223 end line: 226 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6700 unit: resetDrugsData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 300 end line: 303 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6701 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbTargetsTablePagination/ngbTargetsTablePagination.controller.js start line: 30 end line: 33 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6702 unit: async searchPublications() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 164 end line: 167 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6703 unit: onClickClear() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 186 end line: 189 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6704 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPagination/ngbBibliographyPagination.controller.js start line: 29 end line: 32 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6705 unit: get targetId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 134 end line: 137 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6706 unit: get targetName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 76 end line: 79 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6707 unit: identificationChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 101 end line: 104 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6708 unit: get tableResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 114 end line: 117 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6709 unit: targetChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 123 end line: 126 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6710 unit: increaseSelectedGeneToken() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 128 end line: 131 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6711 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 103 end line: 106 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6712 unit: $onDestroy() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 108 end line: 111 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6713 unit: clearTimeouts() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 172 end line: 175 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6714 unit: preventListFromClosing() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 47 end line: 50 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6715 unit: stopPreventListFromClosing() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 52 end line: 55 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6716 unit: resetFilters() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 169 end line: 172 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6717 unit: resetFilters() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterInput/ngbDiseasesFilterInput.controller.js start line: 29 end line: 32 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6718 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTablePagination/ngbDiseasesTablePagination.controller.js start line: 31 end line: 34 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6719 unit: getTarget() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 166 end line: 169 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6720 unit: resetDiseasesData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 157 end line: 160 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6721 unit: get tableResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.controller.js start line: 38 end line: 41 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6722 unit: async targetChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 229 end line: 232 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6723 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTablePagination/ngbStructureTablePagination.controller.js start line: 31 end line: 34 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6724 unit: resetFilters() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTableFilter/ngbStructureTableFilter.controller.js start line: 42 end line: 45 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6725 unit: resetStructureData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 332 end line: 335 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6726 unit: preventListFromClosing() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 60 end line: 63 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6727 unit: stopPreventListFromClosing() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 65 end line: 68 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6728 unit: resetFilters() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 208 end line: 211 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6729 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTablePagination/ngbGenomicsTablePagination.controller.js start line: 31 end line: 34 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6730 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 95 end line: 98 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6731 unit: get interestGenes() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 116 end line: 119 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6732 unit: setTotalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 335 end line: 338 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6733 unit: setTotalCount() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 340 end line: 343 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6734 unit: getTarget() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 437 end line: 440 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6735 unit: get targetId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 131 end line: 134 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6736 unit: _increaseRequestToken() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 84 end line: 87 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6737 unit: targetChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 98 end line: 101 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6738 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.service.js start line: 16 end line: 19 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6739 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTablePagination/ngbSequencesTablePagination.controller.js start line: 31 end line: 34 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6740 unit: async geneChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 224 end line: 227 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6741 unit: resetSequenceResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 229 end line: 232 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6742 unit: get tableResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 112 end line: 115 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6743 unit: getLocalReference() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 344 end line: 347 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6744 unit: get isParasite() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 119 end line: 122 size: 4 LOC McCabe index: 3 number of parameters: 0 id: 6745 unit: updateSettings() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 136 end line: 139 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6746 unit: getTarget() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 141 end line: 144 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6747 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbChemicalTablePagination/ngbChemicalTablePagination.controller.js start line: 31 end line: 34 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6748 unit: async searchChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 95 end line: 98 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6749 unit: targetChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 272 end line: 275 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6750 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 132 end line: 135 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6751 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.controller.js start line: 50 end line: 53 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6752 unit: onChangeProtein() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 120 end line: 123 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6753 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbProteinTablePagination/ngbProteinTablePagination.controller.js start line: 31 end line: 34 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6754 unit: async searchChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 95 end line: 98 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6755 unit: set sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.service.js start line: 37 end line: 40 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6756 unit: get tableResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 47 end line: 50 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6757 unit: get drugResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 71 end line: 74 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6758 unit: resetDrugsData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 105 end line: 108 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6759 unit: preventListFromClosing() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 54 end line: 57 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6760 unit: stopPreventListFromClosing() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 59 end line: 62 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6761 unit: resetFilters() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 176 end line: 179 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6762 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTablePagination/ngbDrugsTablePagination.controller.js start line: 31 end line: 34 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6763 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 174 end line: 177 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6764 unit: getTarget() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 218 end line: 221 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6765 unit: mdChipsCtrl.onInputBlur = function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/md-chips-trim/index.js start line: 6 end line: 9 size: 4 LOC McCabe index: 3 number of parameters: 0 id: 6766 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetContextMenu.controller.js start line: 18 end line: 21 size: 4 LOC McCabe index: 1 number of parameters: 5 id: 6767 unit: deleteNodePermissions() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.service.js start line: 62 end line: 65 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6768 unit: grantPermission() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.service.js start line: 67 end line: 70 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6769 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTablePaginate/ngbTargetsTablePaginate.controller.js start line: 18 end line: 21 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6770 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 82 end line: 85 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6771 unit: showOthers() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 319 end line: 322 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6772 unit: showLess() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 324 end line: 327 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6773 unit: onClickIdentifications() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 347 end line: 350 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6774 unit: resetFilters() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterInput/ngbTargetsFilterInput.controller.js start line: 42 end line: 45 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6775 unit: preventListFromClosing() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 49 end line: 52 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6776 unit: stopPreventListFromClosing() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 54 end line: 57 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6777 unit: resetFilters() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 175 end line: 178 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6778 unit: get showDiseaseTags() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 71 end line: 74 size: 4 LOC McCabe index: 3 number of parameters: 0 id: 6779 unit: get showProductTags() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 75 end line: 78 size: 4 LOC McCabe index: 3 number of parameters: 0 id: 6780 unit: $scope.delete = function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 259 end line: 262 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6781 unit: async deleteTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 270 end line: 273 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6782 unit: async initialize() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterInput/ngbTargetGenesFilterInput.controller.js start line: 22 end line: 25 size: 4 LOC McCabe index: 5 number of parameters: 0 id: 6783 unit: applyCanceled() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterInput/ngbTargetGenesFilterInput.controller.js start line: 58 end line: 61 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6784 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesTableFilter.controller.js start line: 11 end line: 14 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6785 unit: preventListFromClosing() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 50 end line: 53 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6786 unit: stopPreventListFromClosing() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 55 end line: 58 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6787 unit: get removeColumnName() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 204 end line: 207 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6788 unit: get launchColumnName() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 209 end line: 212 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6789 unit: refreshColumns() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 253 end line: 256 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6790 unit: $scope.delete = function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 481 end line: 484 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6791 unit: openConfirmDialog() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 743 end line: 757 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6792 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbGenesTablePagination/ngbGenesTablePagination.controller.js start line: 29 end line: 32 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6793 unit: setAdditionalColumns() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 157 end line: 160 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6794 unit: template: require() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.component.js start line: 5 end line: 8 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6795 unit: showResults() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 261 end line: 264 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6796 unit: preventListFromClosing() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbMotifsResultsFilterList.controller.js start line: 125 end line: 128 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6797 unit: stopPreventListFromClosing() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbMotifsResultsFilterList.controller.js start line: 130 end line: 133 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6798 unit: showParams() file: client/client/app/components/ngbMotifsPanel/ngbMotifsParamsTable/ngbMotifsParamsTable.controller.js start line: 100 end line: 103 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6799 unit: async showSearchMotifResults() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 229 end line: 232 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6800 unit: initialize() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResult.controller.js start line: 28 end line: 31 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6801 unit: initialize() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResult.controller.js start line: 28 end line: 31 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6802 unit: setTotalPages() file: client/client/app/components/ngbHomologsPanel/ngbHomologsPanelPaginate/ngbHomologsPanelPaginate.controller.js start line: 20 end line: 23 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6803 unit: setTotalPages() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTablePaginate/ngbBookmarksTablePaginate.controller.js start line: 34 end line: 37 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6804 unit: refresh() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTablePaginate/ngbBookmarksTablePaginate.controller.js start line: 45 end line: 48 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6805 unit: openBookmarksPanel() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.controller.js start line: 218 end line: 221 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6806 unit: preventListFromClosing() file: 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LOC McCabe index: 1 number of parameters: 0 id: 6815 unit: async onProjectChanged() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 83 end line: 86 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6816 unit: async loadingStarted() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 88 end line: 91 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6817 unit: get maxTracksToOpen() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 112 end line: 115 size: 4 LOC McCabe index: 3 number of parameters: 0 id: 6818 unit: toggleSelected() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 208 end line: 211 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6819 unit: expanded() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 224 end line: 227 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6820 unit: initEvents() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 231 end line: 234 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6821 unit: preventListFromClosing() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbGenesFilterList.controller.js start line: 87 end line: 90 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6822 unit: stopPreventListFromClosing() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbGenesFilterList.controller.js start line: 92 end line: 95 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6823 unit: loadColumns() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableColumn/ngbGenesTableColumn.controller.js start line: 51 end line: 54 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6824 unit: template: require() file: 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parameters: 2 id: 6893 unit: registerGroupAutoScaleManager() file: client/client/modules/render/tracks/wig/wigTransformer.js start line: 11 end line: 14 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6894 unit: const skipItem = function() file: client/client/modules/render/tracks/wig/wigTransformer.js start line: 184 end line: 187 size: 4 LOC McCabe index: 5 number of parameters: 1 id: 6895 unit: render() file: client/client/modules/render/tracks/wig/wigArea.js start line: 51 end line: 54 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6896 unit: constructor() file: client/client/modules/render/tracks/bam/internal/renderer/features/coverageRenderer.js start line: 9 end line: 12 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6897 unit: constructor() file: client/client/modules/render/tracks/bam/internal/renderer/features/sashimiRenderer.js start line: 5 end line: 8 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6898 unit: constructor() file: 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6908 unit: this._removeListener = function() file: client/client/modules/render/tracks/bam/index.js start line: 211 end line: 214 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6909 unit: setScrollPosition() file: client/client/modules/render/tracks/bam/index.js start line: 515 end line: 518 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6910 unit: hoverVerticalScroll() file: client/client/modules/render/tracks/bam/index.js start line: 635 end line: 638 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6911 unit: unhoverVerticalScroll() file: client/client/modules/render/tracks/bam/index.js start line: 640 end line: 643 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6912 unit: constructor() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/geneFeatureRenderer.js start line: 13 end line: 16 size: 4 LOC McCabe index: 1 number of parameters: 6 id: 6913 unit: constructor() file: 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client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/variantAltFeatureRenderer.js start line: 10 end line: 13 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6919 unit: constructor() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/vcfRenderer.js start line: 5 end line: 8 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6920 unit: set scrollerHovered() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/scroll.js start line: 52 end line: 55 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6921 unit: translateContainer() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/coverage.js start line: 28 end line: 31 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6922 unit: value: getNucleotideData() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/coverage.js start line: 72 end line: 75 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6923 unit: value: getNucleotideData() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/coverage.js start line: 76 end line: 79 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6924 unit: value: getNucleotideData() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/coverage.js start line: 80 end line: 83 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6925 unit: value: getNucleotideData() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/coverage.js start line: 84 end line: 87 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6926 unit: onClick() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/index.js start line: 671 end line: 674 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6927 unit: buildComponent() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/statisticsContainer.js start line: 18 end line: 21 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6928 unit: constructor() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 20 end line: 23 size: 4 LOC McCabe index: 1 number of parameters: 4 id: 6929 unit: static getBubbleRadius() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 34 end line: 37 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6930 unit: const intersects = function() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 295 end line: 298 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 6931 unit: constructor() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 30 end line: 33 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6932 unit: static _labelsIntersects() file: client/client/modules/render/tracks/ruler/rulerRenderer.js start line: 195 end line: 198 size: 4 LOC McCabe index: 4 number of parameters: 3 id: 6933 unit: clearData() file: client/client/modules/render/tracks/ruler/index.js start line: 56 end line: 59 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6934 unit: destructor() file: client/client/modules/render/tracks/ruler/index.js start line: 61 end line: 64 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6935 unit: scroll() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 238 end line: 241 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6936 unit: layer: getLayerIndex() file: client/client/modules/render/tracks/featureCounts/internal/renderer/features/drawing/fcFeatureRenderer.js start line: 49 end line: 52 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6937 unit: constructor() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcRenderer.js start line: 5 end line: 8 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6938 unit: scroll() file: client/client/modules/render/tracks/blast/renderer.js start line: 25 end line: 28 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6939 unit: translateContainer() file: client/client/modules/render/tracks/blast/renderer.js start line: 30 end line: 33 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6940 unit: destructor() file: client/client/modules/render/tracks/blast/index.js start line: 189 end line: 192 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6941 unit: scroll() file: client/client/modules/render/tracks/comparison/renderer.js start line: 21 end line: 24 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6942 unit: translateContainer() file: client/client/modules/render/tracks/comparison/renderer.js start line: 26 end line: 29 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6943 unit: destructor() file: client/client/modules/render/tracks/comparison/index.js start line: 134 end line: 137 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6944 unit: constructor() file: client/client/modules/render/tracks/seg/index.js start line: 25 end line: 28 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6945 unit: _drawTrackRow() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 216 end line: 225 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6946 unit: rebuildContainer() file: client/client/modules/render/tracks/reference/referenceRenderer.js start line: 28 end line: 31 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6947 unit: translateContainer() file: client/client/modules/render/tracks/reference/referenceRenderer.js start line: 33 end line: 36 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6948 unit: getGroup() file: client/client/modules/render/utilities/groupAutoScaleManager.js start line: 122 end line: 125 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6949 unit: constructor() file: client/client/modules/render/utilities/placeholderRenderer.js start line: 14 end line: 17 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6950 unit: static _rectangleFitBoundaries() file: client/client/modules/render/utilities/zonesManager.js start line: 386 end line: 389 size: 4 LOC McCabe index: 6 number of parameters: 2 id: 6951 unit: constructor() file: client/client/modules/render/heatmap/interactions/interactive-zone.js start line: 134 end line: 137 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6952 unit: initialize() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/index.js start line: 73 end line: 76 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6953 unit: onDragStart() file: client/client/modules/render/heatmap/renderer/viewport-renderer/index.js start line: 86 end line: 89 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6954 unit: get labelFitsTick() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 141 end line: 144 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6955 unit: markAsChanged() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 133 end line: 136 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6956 unit: onHover() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 215 end line: 218 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6957 unit: destroy() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 62 end line: 65 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6958 unit: emitAnimate() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 75 end line: 78 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6959 unit: colorSchemeChanged() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 205 end line: 208 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6960 unit: getSessionFlags() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 226 end line: 229 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6961 unit: updateSessionFlags() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 231 end line: 234 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6962 unit: handleUpdate() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 233 end line: 236 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6963 unit: getChild() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/collapsed-tree.js start line: 161 end line: 164 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6964 unit: constructor() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/webgl-graphics.js start line: 5 end line: 12 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6965 unit: render() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/webgl-graphics.js start line: 149 end line: 152 size: 4 LOC McCabe index: 3 number of parameters: 0 id: 6966 unit: merge() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/index.js start line: 24 end line: 27 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6967 unit: render() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/index.js start line: 149 end line: 152 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6968 unit: function getVec3Color() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/helpers.js start line: 37 end line: 40 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6969 unit: updateSessionFlags() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 462 end line: 465 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6970 unit: constructor() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 27 end line: 30 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6971 unit: onMove() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 287 end line: 290 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6972 unit: set deviceAvailableWidth() file: client/client/modules/render/heatmap/viewport/index.js start line: 84 end line: 87 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6973 unit: set deviceAvailableHeight() file: client/client/modules/render/heatmap/viewport/index.js start line: 93 end line: 96 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6974 unit: constructor() file: client/client/modules/render/heatmap/viewport/heatmap-scale.js start line: 19 end line: 22 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6975 unit: onScale() file: client/client/modules/render/heatmap/viewport/heatmap-scale.js start line: 39 end line: 42 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6976 unit: destroy() file: client/client/modules/render/heatmap/animation/animated.js start line: 9 end line: 12 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6977 unit: constructor() file: client/client/modules/render/heatmap/animation/animation-set.js start line: 5 end line: 12 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6978 unit: start() file: client/client/modules/render/heatmap/animation/animation-set.js start line: 32 end line: 35 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6979 unit: destroy() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 39 end line: 42 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6980 unit: prepare() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 163 end line: 166 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6981 unit: emit() file: client/client/modules/render/heatmap/utilities/heatmap-event-dispatcher.js start line: 28 end line: 31 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6982 unit: export function readHeatmapState() file: client/client/modules/render/heatmap/heatmap-view-options/manager.js start line: 15 end line: 18 size: 4 LOC McCabe index: 2 number of parameters: 1 id: 6983 unit: destroy() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 123 end line: 126 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6984 unit: set missingColor() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 404 end line: 407 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6985 unit: set highColor() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 413 end line: 416 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6986 unit: set lowColor() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 422 end line: 425 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6987 unit: set mediumColor() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 431 end line: 434 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6988 unit: function getColor() file: client/client/modules/render/heatmap/color-scheme/helpers.js start line: 46 end line: 49 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 6989 unit: set domainsInfo() file: client/client/modules/render/variant-render/renderers/drawing/utilities/domain-colors-manager.js start line: 12 end line: 15 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6990 unit: constructor() file: client/client/modules/render/variant-render/renderers/zones/variant-zones-manager.js start line: 16 end line: 19 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6991 unit: constructor() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 71 end line: 74 size: 4 LOC McCabe index: 1 number of parameters: 6 id: 6992 unit: constructor() file: client/client/modules/render/variant-render/renderers/interaction/drag-manager.js start line: 13 end line: 16 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 6993 unit: width: convertation() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 378 end line: 382 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 6994 unit: onRendererHeightChanged() file: client/client/modules/render/variant-render/variant-renderer.js start line: 136 end line: 139 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6995 unit: function useTotalCount() file: export-templates/target-identification/src/model/main.ts start line: 34 end line: 37 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6996 unit: export function useComparativeGenomics() file: export-templates/target-identification/src/model/main.ts start line: 117 end line: 120 size: 4 LOC McCabe index: 2 number of parameters: 0 id: 6997 unit: export function usePublications() file: export-templates/target-identification/src/model/main.ts start line: 128 end line: 131 size: 4 LOC McCabe index: 1 number of parameters: 0 id: 6998 unit: env: createEnv() file: desktop/src/ScriptUtils.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 6999 unit: exports.sleep = function() file: desktop/src/ScriptUtils.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7000 unit: public Properties loadCommandProperties() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/ConfigurationLoader.java start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7001 unit: protected void exit() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/Application.java start line: 407 end line: 409 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7002 unit: public SpeciesEntity getSpecies() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7003 unit: public void setSpecies() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7004 unit: public String getType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7005 unit: public void setType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7006 unit: public String getPath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7007 unit: public void setPath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7008 unit: public String getSource() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7009 unit: public void setSource() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7010 unit: public BiologicalDataItemFormat getFormat() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7011 unit: public void setFormat() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7012 unit: public Date getCreatedDate() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7013 unit: public void setCreatedDate() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7014 unit: public Long getBioDataItemId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7015 unit: public void setBioDataItemId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItem.java start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7016 unit: public SpeciesEntity getSpecies() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7017 unit: public void setSpecies() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7018 unit: public String getPath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7019 unit: public void setPath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7020 unit: public String getName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7021 unit: public void setName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7022 unit: public String getIndexPath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7023 unit: public void setIndexPath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7024 unit: public Long getReferenceId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7025 unit: public void setReferenceId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7026 unit: public List getItems() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7027 unit: public void setItems() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7028 unit: public RegistrationRequest getGeneFileRequest() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7029 unit: public void setGeneFileRequest() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7030 unit: public Long getGeneFileId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7031 unit: public void setGeneFileId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7032 unit: public Boolean getDoIndex() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7033 unit: public void setDoIndex() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7034 unit: public Boolean getNoGCContent() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7035 unit: public void setNoGCContent() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7036 unit: public BiologicalDataItemResourceType getType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7037 unit: public void setType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7038 unit: public BiologicalDataItemResourceType getIndexType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7039 unit: public void setIndexType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7040 unit: public String getPrettyName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 143 end line: 145 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7041 unit: public void setPrettyName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/RegistrationRequest.java start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7042 unit: public String formatItem() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BlastDatabase.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7043 unit: public Long getBioDataItemId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/ProjectItem.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7044 unit: public void setBioDataItemId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/ProjectItem.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7045 unit: public boolean isHidden() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/ProjectItem.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7046 unit: public void setHidden() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/ProjectItem.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7047 unit: public String formatItem() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionsContainer.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7048 unit: public Long getId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BaseEntity.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7049 unit: public void setId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BaseEntity.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7050 unit: public String getName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BaseEntity.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7051 unit: public void setName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BaseEntity.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7052 unit: public String getPrettyName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BaseEntity.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7053 unit: public void setPrettyName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BaseEntity.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7054 unit: public String formatItem() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/SpeciesEntity.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7055 unit: private String getTaxIdValue() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/SpeciesEntity.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7056 unit: public String formatItem() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/NgbUser.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7057 unit: public Date getCreatedDate() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7058 unit: public List getNestedProjects() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7059 unit: public void setNestedProjects() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7060 unit: public void setCreatedDate() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7061 unit: public List getItems() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7062 unit: public void setItems() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7063 unit: public Integer getItemsCount() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7064 unit: public void setItemsCount() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7065 unit: public Map getItemsCountPerFormat() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7066 unit: public void setItemsCountPerFormat() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7067 unit: public Date getLastOpenedDate() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7068 unit: public void setLastOpenedDate() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7069 unit: public Long getParentId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 209 end line: 211 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7070 unit: public void setParentId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/Project.java start line: 213 end line: 215 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7071 unit: public String getOriginalFilePath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/SortRequest.java start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7072 unit: public void setOriginalFilePath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/SortRequest.java start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7073 unit: public String getSortedFilePath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/SortRequest.java start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7074 unit: public void setSortedFilePath() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/SortRequest.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7075 unit: public Integer getMaxMemory() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/SortRequest.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7076 unit: public void setMaxMemory() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/SortRequest.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7077 unit: public long getId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItemResourceType.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7078 unit: public boolean isRequireIndex() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/BiologicalDataItemFormat.java start line: 159 end line: 161 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7079 unit: public final T getPayload() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/ResponseResult.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7080 unit: public final void setPayload() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/ResponseResult.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7081 unit: public final String getStatus() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/ResponseResult.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7082 unit: public final void setStatus() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/ResponseResult.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7083 unit: public final String getMessage() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/ResponseResult.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7084 unit: public final void setMessage() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/ResponseResult.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7085 unit: public Boolean getPrincipal() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionGrantRequest.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7086 unit: public void setPrincipal() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionGrantRequest.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7087 unit: public String getUserName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionGrantRequest.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7088 unit: public void setUserName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionGrantRequest.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7089 unit: public Integer getMask() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionGrantRequest.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7090 unit: public void setMask() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionGrantRequest.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7091 unit: public AclClass getAclClass() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionGrantRequest.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7092 unit: public void setAclClass() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionGrantRequest.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7093 unit: public Long getId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionGrantRequest.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7094 unit: public void setId() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionGrantRequest.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7095 unit: public static String getMessage() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/constants/MessageConstants.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7096 unit: public void printSimple() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/printer/AbstractResultPrinter.java start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7097 unit: private TablePrinter() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/printer/AbstractResultPrinter.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7098 unit: public int runCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/simple/SetPropertyCommandHandler.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7099 unit: Properties getProperties() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/simple/SetPropertyCommandHandler.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7100 unit: public CommandConfiguration getConfiguration() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/simple/AbstractSimpleCommandHandler.java start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7101 unit: public void setConfiguration() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/simple/AbstractSimpleCommandHandler.java start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7102 unit: public String getCommand() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/simple/AbstractSimpleCommandHandler.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7103 unit: private HttpRequestBase createListingRequest() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/dataset/DatasetListHandler.java start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7104 unit: public String getDataset() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/UrlGeneratorHandler.java start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7105 unit: public void setDataset() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/UrlGeneratorHandler.java start line: 151 end line: 153 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7106 unit: public List getIds() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/UrlGeneratorHandler.java start line: 155 end line: 157 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7107 unit: public void setIds() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/UrlGeneratorHandler.java start line: 159 end line: 161 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7108 unit: protected void parseAnnotationType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/heatmap/HeatmapCellAnnotationHandler.java start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7109 unit: private static Comparator getSidComparator() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/PrintPermissionsHelper.java start line: 114 end line: 116 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 7110 unit: protected boolean isRemoving() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/reference/AnnotationReferenceRemovingHandler.java start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7111 unit: protected boolean isRemoving() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/reference/AnnotationReferenceAddingHandler.java start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7112 unit: public ServerParameters getServerParameters() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 152 end line: 154 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7113 unit: public void setServerParameters() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 156 end line: 158 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7114 unit: public String getRequestType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7115 unit: public String getRequestUrl() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 164 end line: 166 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7116 unit: public void setRequestUrl() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 168 end line: 170 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7117 unit: public void setRequestType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 172 end line: 174 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7118 unit: protected HttpRequestBase getRequestFromURL() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 193 end line: 195 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7119 unit: protected ObjectMapper getMapper() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 250 end line: 252 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7120 unit: private List loadItemsByName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 806 end line: 808 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7121 unit: CommandHandler getCommandHandler() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandManager.java start line: 168 end line: 170 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7122 unit: private String findServerUrl() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandManager.java start line: 172 end line: 174 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7123 unit: private String findToken() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandManager.java start line: 176 end line: 178 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7124 unit: public String getName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandConfiguration.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7125 unit: public void setName() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandConfiguration.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7126 unit: public String getRequestUrl() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandConfiguration.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7127 unit: public void setRequestUrl() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandConfiguration.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7128 unit: public String getRequestType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandConfiguration.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7129 unit: public void setRequestType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/CommandConfiguration.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7130 unit: public static JsonMapper getMapper() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/JsonMapper.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7131 unit: public ApplicationException() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/exception/ApplicationException.java start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7132 unit: public ApplicationException() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/exception/ApplicationException.java start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7133 unit: public SidRetrievalStrategy sidRetrievalStrategy() file: server/catgenome/src/main/java/com/epam/catgenome/app/AclSecurityConfiguration.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7134 unit: public AuditLogger auditLogger() file: server/catgenome/src/main/java/com/epam/catgenome/app/AclSecurityConfiguration.java start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7135 unit: public AclAuthorizationStrategy aclAuthorizationStrategy() file: server/catgenome/src/main/java/com/epam/catgenome/app/AclSecurityConfiguration.java start line: 138 end line: 140 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7136 unit: public PermissionGrantingStrategy permissionGrantingStrategy() file: server/catgenome/src/main/java/com/epam/catgenome/app/AclSecurityConfiguration.java start line: 143 end line: 145 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7137 unit: public static void main() file: server/catgenome/src/main/java/com/epam/catgenome/app/Application.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7138 unit: private void print() file: server/catgenome/src/main/java/com/epam/catgenome/app/Application.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7139 unit: ISeekableStreamFactory ngbSeekableStreamFactory() file: server/catgenome/src/main/java/com/epam/catgenome/app/Application.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7140 unit: S3Client s3Client() file: server/catgenome/src/main/java/com/epam/catgenome/app/Application.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7141 unit: public ObjectMapper objectMapper() file: server/catgenome/src/main/java/com/epam/catgenome/app/AppMVCConfiguration.java start line: 136 end line: 138 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7142 unit: public SwaggerConfig swaggerConfig() file: server/catgenome/src/main/java/com/epam/catgenome/app/AppMVCConfiguration.java start line: 141 end line: 143 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7143 unit: private boolean useEmbeddedContainer() file: server/catgenome/src/main/java/com/epam/catgenome/app/AppMVCConfiguration.java start line: 155 end line: 157 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 7144 unit: protected String getPublicKey() file: server/catgenome/src/main/java/com/epam/catgenome/app/JWTSecurityConfiguration.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7145 unit: protected JwtAuthenticationProvider jwtAuthenticationProvider() file: server/catgenome/src/main/java/com/epam/catgenome/app/JWTSecurityConfiguration.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7146 unit: public JwtTokenVerifier jwtTokenVerifier() file: server/catgenome/src/main/java/com/epam/catgenome/app/JWTSecurityConfiguration.java start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7147 unit: protected JwtFilterAuthenticationFilter getJwtAuthenticationFilter() file: server/catgenome/src/main/java/com/epam/catgenome/app/JWTSecurityConfiguration.java start line: 132 end line: 134 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7148 unit: protected RequestMatcher getFullRequestMatcher() file: server/catgenome/src/main/java/com/epam/catgenome/app/JWTSecurityConfiguration.java start line: 136 end line: 138 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7149 unit: protected String getSecuredResources() file: server/catgenome/src/main/java/com/epam/catgenome/app/JWTSecurityConfiguration.java start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7150 unit: protected void configure() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 229 end line: 231 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7151 unit: public VelocityEngine velocityEngine() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 235 end line: 237 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7152 unit: public StaticBasicParserPool parserPool() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 241 end line: 243 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7153 unit: public ParserPoolHolder parserPoolHolder() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 246 end line: 248 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7154 unit: public HttpClient httpClient() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 252 end line: 254 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7155 unit: public static SAMLBootstrap sAMLBootstrap() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 285 end line: 287 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7156 unit: public SAMLDefaultLogger samlLogger() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 291 end line: 293 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7157 unit: public WebSSOProfileConsumerHoKImpl hokWebSSOprofileConsumer() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 306 end line: 308 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7158 unit: public WebSSOProfile webSSOprofile() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 312 end line: 314 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7159 unit: public WebSSOProfileConsumerHoKImpl hokWebSSOProfile() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 318 end line: 320 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7160 unit: public WebSSOProfileECPImpl ecpprofile() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 324 end line: 326 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7161 unit: public SAMLDiscovery samlIDPDiscovery() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 376 end line: 378 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7162 unit: public MetadataDisplayFilter metadataDisplayFilter() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 419 end line: 421 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7163 unit: public MetadataGeneratorFilter metadataGeneratorFilter() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 462 end line: 464 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7164 unit: public HTTPArtifactBinding artifactBinding() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 510 end line: 512 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7165 unit: public HTTPSOAP11Binding soapBinding() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 515 end line: 517 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7166 unit: public HTTPPostBinding httpPostBinding() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 520 end line: 522 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7167 unit: public HTTPRedirectDeflateBinding httpRedirectDeflateBinding() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 525 end line: 527 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7168 unit: public HTTPSOAP11Binding httpSOAP11Binding() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 530 end line: 532 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7169 unit: public HTTPPAOS11Binding httpPAOS11Binding() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 535 end line: 537 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7170 unit: public AuthenticationManager authenticationManagerBean() file: server/catgenome/src/main/java/com/epam/catgenome/app/SAMLSecurityConfiguration.java start line: 586 end line: 588 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7171 unit: public NggbIntervalTreeMap() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7172 unit: public IntervalTree debugGetTree() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7173 unit: public void clear() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7174 unit: public boolean containsKey() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7175 unit: public boolean containsKey() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7176 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7177 unit: public T get() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7178 unit: public T get() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7179 unit: public boolean isEmpty() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7180 unit: public T put() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7181 unit: public T remove() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7182 unit: public T remove() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7183 unit: public int size() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7184 unit: public boolean containsOverlapping() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7185 unit: public Collection getOverlapping() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 150 end line: 152 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7186 unit: public boolean containsContained() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 155 end line: 157 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7187 unit: public Collection getContained() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7188 unit: public IntervalTreeMap getTreeMap() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 164 end line: 166 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7189 unit: public int getMinStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 171 end line: 173 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7190 unit: public void setMinStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 175 end line: 177 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7191 unit: public int getMaxEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7192 unit: public void setMaxEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/NggbIntervalTreeMap.java start line: 186 end line: 188 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7193 unit: public boolean hasNext() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureIterator.java start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7194 unit: public void remove() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureIterator.java start line: 172 end line: 174 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7195 unit: public long getPosition() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureIterator.java start line: 180 end line: 182 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 7196 unit: public Iterator iterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureIterator.java start line: 185 end line: 187 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7197 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureIterator.java start line: 190 end line: 192 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7198 unit: static String buildContentDispositionHeader() file: server/catgenome/src/main/java/com/epam/catgenome/util/QueryUtils.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7199 unit: private Match createMatch() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/MotifSearchIterator.java start line: 98 end line: 100 size: 3 LOC McCabe index: 2 number of parameters: 3 id: 7200 unit: public boolean hasNext() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/MotifSearchIterator.java start line: 103 end line: 105 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 7201 unit: public static boolean validateReversibleRegex() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/IupacRegexConverter.java start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7202 unit: public static boolean validatePlainMotif() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/IupacRegexConverter.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7203 unit: public PositionalOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/PositionalOutputStream.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7204 unit: public final void write() file: server/catgenome/src/main/java/com/epam/catgenome/util/PositionalOutputStream.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7205 unit: public final long getPosition() file: server/catgenome/src/main/java/com/epam/catgenome/util/PositionalOutputStream.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7206 unit: public BlockCompressedDataInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataInputStream.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7207 unit: public BlockCompressedDataInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataInputStream.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7208 unit: public BlockCompressedDataInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataInputStream.java start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7209 unit: public BlockCompressedDataInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataInputStream.java start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7210 unit: public BlockCompressedDataInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataInputStream.java start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7211 unit: public float readFloat() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataInputStream.java start line: 207 end line: 209 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7212 unit: public double readDouble() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataInputStream.java start line: 216 end line: 218 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7213 unit: public VCFSorter() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/VCFSorter.java start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 7214 unit: Parser getParser() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/VCFSorter.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7215 unit: public BedSorter() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/BedSorter.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 7216 unit: Parser getParser() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/BedSorter.java start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7217 unit: public void setOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/SortableRecordCodec.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7218 unit: public void setInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/SortableRecordCodec.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7219 unit: public String getChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/SortableRecord.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7220 unit: public int getStart() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/SortableRecord.java start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7221 unit: public String getText() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/SortableRecord.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7222 unit: public GFFSorter() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/GFFSorter.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 7223 unit: Parser getParser() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/GFFSorter.java start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7224 unit: public static AzureSeekableStreamFactory getInstance() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureSeekableStreamFactory.java start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7225 unit: public SeekableStream getStreamFor() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureSeekableStreamFactory.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7226 unit: public SeekableStream getStreamFor() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureSeekableStreamFactory.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7227 unit: public SeekableStream getBufferedStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureSeekableStreamFactory.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7228 unit: BlobServiceClientBuilder configureCredential() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7229 unit: public void init() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7230 unit: public boolean blobExists() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 144 end line: 146 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7231 unit: public long getFileSize() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7232 unit: public InputStream loadFully() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 193 end line: 195 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7233 unit: public static boolean isAzSource() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 198 end line: 200 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7234 unit: public static AzureBlobClient getClient() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 202 end line: 204 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7235 unit: public static BiologicalDataItemFormat getFormatByExtension() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 146 end line: 148 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7236 unit: public static boolean isFileBrowsingAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 166 end line: 168 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7237 unit: public static boolean isGzCompressed() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7238 unit: public static boolean isRemotePath() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 174 end line: 176 size: 3 LOC McCabe index: 3 number of parameters: 1 id: 7239 unit: public static String getCellValue() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 178 end line: 180 size: 3 LOC McCabe index: 3 number of parameters: 1 id: 7240 unit: public static String getBioDataItemName() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 202 end line: 204 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 7241 unit: public boolean isExtendedInfoField() file: server/catgenome/src/main/java/com/epam/catgenome/util/InfoFieldParser.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7242 unit: public HdfsSeekableInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/HdfsSeekableInputStream.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7243 unit: public long length() file: server/catgenome/src/main/java/com/epam/catgenome/util/HdfsSeekableInputStream.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7244 unit: public long position() file: server/catgenome/src/main/java/com/epam/catgenome/util/HdfsSeekableInputStream.java start line: 61 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7245 unit: public void seek() file: server/catgenome/src/main/java/com/epam/catgenome/util/HdfsSeekableInputStream.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7246 unit: public int read() file: server/catgenome/src/main/java/com/epam/catgenome/util/HdfsSeekableInputStream.java start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7247 unit: public int read() file: server/catgenome/src/main/java/com/epam/catgenome/util/HdfsSeekableInputStream.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 7248 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/util/HdfsSeekableInputStream.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7249 unit: public boolean eof() file: server/catgenome/src/main/java/com/epam/catgenome/util/HdfsSeekableInputStream.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7250 unit: public String getSource() file: server/catgenome/src/main/java/com/epam/catgenome/util/HdfsSeekableInputStream.java start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7251 unit: public static Date getTimeForS3URL() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7252 unit: public static Double getSystemTimeMilliseconds() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7253 unit: public static String getHashFromUrlString() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 264 end line: 266 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7254 unit: public static String addClauseToQuery() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 482 end line: 484 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 7255 unit: public static List dataToList() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 545 end line: 547 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 7256 unit: public static String listToData() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 549 end line: 551 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7257 unit: public static boolean checkFlag() file: server/catgenome/src/main/java/com/epam/catgenome/util/BamUtil.java start line: 215 end line: 217 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7258 unit: public String getValue() file: server/catgenome/src/main/java/com/epam/catgenome/util/db/Condition.java start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7259 unit: public static String getGeneIdsClause() file: server/catgenome/src/main/java/com/epam/catgenome/util/db/DBQueryUtils.java start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7260 unit: public static String getInClause() file: server/catgenome/src/main/java/com/epam/catgenome/util/db/DBQueryUtils.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7261 unit: public DiskBasedList() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7262 unit: public List adaptToList() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7263 unit: private boolean hasMoreInCurrentFile() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 166 end line: 168 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 7264 unit: public int size() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 180 end line: 182 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7265 unit: public boolean isEmpty() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 185 end line: 187 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7266 unit: public boolean contains() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 190 end line: 192 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7267 unit: public Iterator iterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 196 end line: 198 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7268 unit: public boolean remove() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 219 end line: 221 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7269 unit: public boolean containsAll() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 224 end line: 226 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7270 unit: public boolean addAll() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 237 end line: 239 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7271 unit: public boolean removeAll() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 242 end line: 244 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7272 unit: public boolean retainAll() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 247 end line: 249 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7273 unit: public void clear() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 252 end line: 254 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7274 unit: public T get() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 257 end line: 259 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7275 unit: public T set() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 262 end line: 264 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7276 unit: public void add() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 267 end line: 269 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7277 unit: public T remove() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 272 end line: 274 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7278 unit: public int indexOf() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 277 end line: 279 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7279 unit: public int lastIndexOf() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 282 end line: 284 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7280 unit: public ListIterator listIterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 288 end line: 290 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7281 unit: public ListIterator listIterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 294 end line: 296 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7282 unit: public List subList() file: server/catgenome/src/main/java/com/epam/catgenome/util/DiskBasedList.java start line: 300 end line: 302 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7283 unit: public ListMapCollector() file: server/catgenome/src/main/java/com/epam/catgenome/util/ListMapCollector.java start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7284 unit: public Set characteristics() file: server/catgenome/src/main/java/com/epam/catgenome/util/ListMapCollector.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7285 unit: public static boolean isS3Source() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 95 end line: 97 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 7286 unit: public long getFileSize() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7287 unit: public InputStream loadFully() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 190 end line: 192 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7288 unit: private CloudType getCloudType() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3Client.java start line: 211 end line: 213 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 7289 unit: public S3ObjectChunkInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3ObjectChunkInputStream.java start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 7290 unit: public static S3SeekableStreamFactory getInstance() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3SeekableStreamFactory.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7291 unit: public SeekableStream getStreamFor() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3SeekableStreamFactory.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7292 unit: public SeekableStream getStreamFor() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3SeekableStreamFactory.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7293 unit: public SeekableStream getBufferedStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3SeekableStreamFactory.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7294 unit: public boolean hasIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 156 end line: 158 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7295 unit: public static void setComponentMethods() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7296 unit: public static boolean hasBlockCompressedExtension() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 183 end line: 185 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7297 unit: public static boolean hasBlockCompressedExtension() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 192 end line: 194 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7298 unit: public Object getHeader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 200 end line: 202 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7299 unit: public Iterator iterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 205 end line: 207 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7300 unit: public boolean hasNext() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 208 end line: 210 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7301 unit: public T next() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 211 end line: 213 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7302 unit: public boolean isTabix() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractFeatureReader.java start line: 227 end line: 229 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7303 unit: public void clearCache() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/EhCacheBasedIndexCache.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7304 unit: public boolean hasIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixFeatureReader.java start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7305 unit: public List getSequenceNames() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixFeatureReader.java start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7306 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixFeatureReader.java start line: 174 end line: 176 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7307 unit: public boolean hasNext() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixFeatureReader.java start line: 226 end line: 228 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7308 unit: public void remove() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixFeatureReader.java start line: 241 end line: 243 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7309 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixFeatureReader.java start line: 245 end line: 247 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7310 unit: public Iterator iterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixFeatureReader.java start line: 249 end line: 251 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7311 unit: protected AbstractEnhancedFeatureReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/AbstractEnhancedFeatureReader.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7312 unit: public int compareTo() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 102 end line: 104 size: 3 LOC McCabe index: 3 number of parameters: 1 id: 7313 unit: public FeatureCodecHeader getHeader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7314 unit: public void setHeader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7315 unit: public FeatureCodec getCodec() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7316 unit: public void setCodec() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 138 end line: 140 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7317 unit: private static boolean less64() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7318 unit: public TabixReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 174 end line: 176 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 7319 unit: public String getSource() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 197 end line: 199 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7320 unit: public String readLine() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 364 end line: 366 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7321 unit: public Set getChromosomes() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 375 end line: 377 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7322 unit: public String next() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 483 end line: 485 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7323 unit: public String toString() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixReader.java start line: 695 end line: 697 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7324 unit: public TabixIteratorLineReader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixIteratorLineReader.java start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7325 unit: private boolean reuseStreamInQuery() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 220 end line: 222 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7326 unit: public List getSequenceNames() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 236 end line: 238 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 7327 unit: public CloseableTribbleIterator iterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 339 end line: 341 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7328 unit: public boolean hasNext() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 381 end line: 383 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7329 unit: public void remove() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 428 end line: 430 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7330 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 433 end line: 435 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7331 unit: public WFIterator iterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 438 end line: 440 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7332 unit: public boolean hasNext() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 469 end line: 471 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7333 unit: public void remove() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 555 end line: 557 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7334 unit: public Iterator iterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 572 end line: 574 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7335 unit: public int read() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 593 end line: 595 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 7336 unit: public Index getIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 616 end line: 618 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7337 unit: public void setIndex() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 620 end line: 622 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7338 unit: public FeatureCodecHeader getHeader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 624 end line: 626 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7339 unit: public void setHeader() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 628 end line: 630 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7340 unit: public FeatureCodec getCodec() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 632 end line: 634 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7341 unit: public void setCodec() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TribbleIndexedFeatureReader.java start line: 636 end line: 638 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7342 unit: public S3Helper() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/EnhancedUrlHelper.java start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7343 unit: public FeatureSeekableStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureSeekableStream.java start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7344 unit: public long length() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureSeekableStream.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7345 unit: public long position() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureSeekableStream.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7346 unit: public int read() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureSeekableStream.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7347 unit: public int read() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureSeekableStream.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 7348 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureSeekableStream.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7349 unit: public boolean eof() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureSeekableStream.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7350 unit: public String getSource() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureSeekableStream.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7351 unit: public CountingWithSkipInputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureSeekableStream.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7352 unit: public BlockCompressedDataOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7353 unit: public BlockCompressedDataOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7354 unit: public BlockCompressedDataOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7355 unit: public BlockCompressedDataOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7356 unit: public BlockCompressedDataOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7357 unit: public BlockCompressedDataOutputStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 7358 unit: public final void writeBoolean() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 99 end line: 101 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 7359 unit: public final void writeByte() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7360 unit: public final void writeFloat() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 168 end line: 170 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7361 unit: public final void writeDouble() file: server/catgenome/src/main/java/com/epam/catgenome/util/BlockCompressedDataOutputStream.java start line: 177 end line: 179 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7362 unit: protected int getNextByte() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureInputStream.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7363 unit: protected boolean chunckEndReached() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureInputStream.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7364 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/util/FeatureInputStream.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7365 unit: public long getPosition() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 331 end line: 333 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 7366 unit: private TupleIterator() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 463 end line: 465 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7367 unit: public static String serialize() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 591 end line: 593 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7368 unit: public static List deserialize() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 595 end line: 597 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7369 unit: public static Query buildTermQuery() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 599 end line: 601 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7370 unit: public static String getField() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 603 end line: 605 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7371 unit: public static ISeekableStreamFactory getInstance() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbSeekableStreamFactory.java start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7372 unit: private NgbSeekableStreamFactory() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbSeekableStreamFactory.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7373 unit: public SeekableStream getBufferedStream() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbSeekableStreamFactory.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7374 unit: private Integer getUserIdClaim() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtTokenGenerator.java start line: 125 end line: 127 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 7375 unit: private Date toDate() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtTokenGenerator.java start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7376 unit: public TokenVerificationException() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/TokenVerificationException.java start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7377 unit: public TokenVerificationException() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/TokenVerificationException.java start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7378 unit: public JwtFilterAuthenticationFilter() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtFilterAuthenticationFilter.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7379 unit: private String extractAuthHeader() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtFilterAuthenticationFilter.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7380 unit: public JwtInitializationException() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtInitializationException.java start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7381 unit: public Object getCredentials() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtAuthenticationToken.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7382 unit: public Object getPrincipal() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtAuthenticationToken.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7383 unit: public boolean supports() file: server/catgenome/src/main/java/com/epam/catgenome/security/jwt/JwtAuthenticationProvider.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7384 unit: public Person getPerson() file: server/catgenome/src/main/java/com/epam/catgenome/security/BrowserUser.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7385 unit: public UserContext() file: server/catgenome/src/main/java/com/epam/catgenome/security/UserContext.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7386 unit: public String getPassword() file: server/catgenome/src/main/java/com/epam/catgenome/security/UserContext.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7387 unit: public String getUsername() file: server/catgenome/src/main/java/com/epam/catgenome/security/UserContext.java start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7388 unit: public boolean isAccountNonExpired() file: server/catgenome/src/main/java/com/epam/catgenome/security/UserContext.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7389 unit: public boolean isAccountNonLocked() file: server/catgenome/src/main/java/com/epam/catgenome/security/UserContext.java start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7390 unit: public boolean isCredentialsNonExpired() file: server/catgenome/src/main/java/com/epam/catgenome/security/UserContext.java start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7391 unit: public boolean isEnabled() file: server/catgenome/src/main/java/com/epam/catgenome/security/UserContext.java start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7392 unit: public final void setPermissionFactory() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 447 end line: 449 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7393 unit: public final void setBatchSize() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 451 end line: 453 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7394 unit: public final void setSelectClause() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 462 end line: 464 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7395 unit: public final void setLookupPrimaryKeysWhereClause() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 469 end line: 471 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7396 unit: public final void setOrderByClause() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 484 end line: 486 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7397 unit: public List getEntries() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 618 end line: 620 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7398 unit: public Long getId() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 622 end line: 624 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7399 unit: public ObjectIdentity getObjectIdentity() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 626 end line: 628 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7400 unit: public Sid getOwner() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 630 end line: 632 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7401 unit: public Acl getParentAcl() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 634 end line: 636 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7402 unit: public boolean isEntriesInheriting() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 638 end line: 640 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7403 unit: public boolean isSidLoaded() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/LookupStrategyImpl.java start line: 648 end line: 650 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7404 unit: public AclSecuredEntry getPermissions() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermissionSecurityService.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7405 unit: public AclSecuredEntry deletePermissions() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermissionSecurityService.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 7406 unit: public AclSecuredEntry deleteAllPermissions() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermissionSecurityService.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7407 unit: public AclSecuredEntry changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermissionSecurityService.java start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 7408 unit: public void syncEntities() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermissionSecurityService.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7409 unit: public boolean isAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7410 unit: public boolean isAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 138 end line: 140 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 7411 unit: public Long findProjectIdByDescription() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionHelper.java start line: 378 end line: 380 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7412 unit: public void setDeleteSidByIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 178 end line: 180 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7413 unit: public void setDeleteEntriesBySidQuery() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 183 end line: 185 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7414 unit: public void setLoadEntriesBySidsCountQuery() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/JdbcMutableAclServiceImpl.java start line: 188 end line: 190 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7415 unit: public void setMask() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/aspect/AclAspect.java start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7416 unit: public void filterTree() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/aspect/AclAspect.java start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7417 unit: public void filterListOfTrees() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/aspect/AclAspect.java start line: 146 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7418 unit: public void extendFilter() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/aspect/AclAspect.java start line: 152 end line: 154 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7419 unit: public void extendMapFilter() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/aspect/AclAspect.java start line: 157 end line: 159 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7420 unit: public NGBMethodSecurityExpressionRoot() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7421 unit: public boolean isAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 7422 unit: public boolean isAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7423 unit: public boolean isOwner() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7424 unit: public boolean isTargetOwner() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 119 end line: 121 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 7425 unit: public boolean projectCanBeMoved() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 209 end line: 211 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7426 unit: public boolean projectCanBeDeleted() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 213 end line: 215 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7427 unit: public boolean hasPermissionByBioItemId() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 217 end line: 219 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7428 unit: public boolean hasPermissionOnTarget() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 221 end line: 223 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7429 unit: public void setFilterObject() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 238 end line: 240 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7430 unit: public Object getFilterObject() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 243 end line: 245 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7431 unit: public void setReturnObject() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 248 end line: 250 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7432 unit: public Object getReturnObject() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 253 end line: 255 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7433 unit: public Object getThis() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 258 end line: 260 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7434 unit: public void setThis() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 262 end line: 264 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7435 unit: public void setPermissionHelper() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionRoot.java start line: 266 end line: 268 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7436 unit: public void setPermissionHelper() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/customexpression/NGBMethodSecurityExpressionHandler.java start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7437 unit: public AclPermissionFactory() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermissionFactory.java start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7438 unit: public AclPermission() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermission.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7439 unit: public AclPermission() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermission.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7440 unit: public int getSimpleMask() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermission.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7441 unit: public static List getBasicPermissions() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermission.java start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7442 unit: public static AclPermission getAclPermissionByName() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/AclPermission.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7443 unit: public boolean filterTree() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 192 end line: 194 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7444 unit: public boolean filterTree() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/GrantPermissionManager.java start line: 196 end line: 198 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 7445 unit: public static List getBasicPermissions() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7446 unit: public static Integer mergeMask() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7447 unit: private static boolean maskIncludes() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7448 unit: private static boolean maskIncludes() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7449 unit: public static boolean isMaskBitSet() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7450 unit: private static boolean isMaskBitSet() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7451 unit: private static boolean bothBitsSet() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 129 end line: 131 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 7452 unit: public static boolean isPermissionGranted() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7453 unit: protected boolean requiresLogout() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/OptionalSAMLLogoutFilter.java start line: 183 end line: 185 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7454 unit: public String getFilterProcessesUrl() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/OptionalSAMLLogoutFilter.java start line: 258 end line: 260 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7455 unit: public SAMLContextProviderCustomSignKey() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLContextProviderCustomSignKey.java start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7456 unit: private LPRequestWrapper() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLContextProviderCustomSignKey.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7457 unit: public String getContextPath() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLContextProviderCustomSignKey.java start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7458 unit: public String getScheme() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLContextProviderCustomSignKey.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7459 unit: public String getServerName() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLContextProviderCustomSignKey.java start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7460 unit: public int getServerPort() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLContextProviderCustomSignKey.java start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7461 unit: public boolean isSecure() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/SAMLContextProviderCustomSignKey.java start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7462 unit: public CustomSAMLProcessingFilter() file: server/catgenome/src/main/java/com/epam/catgenome/security/saml/CustomSAMLProcessingFilter.java start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7463 unit: public BiologicalDataItem() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7464 unit: public AbstractSecuredEntity getParent() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7465 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7466 unit: public BiologicalDataItemResourceType getType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7467 unit: public void setType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7468 unit: public String getPath() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7469 unit: public void setPath() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7470 unit: public String getSource() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7471 unit: public void setSource() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7472 unit: public BiologicalDataItemFormat getFormat() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7473 unit: public final void setFormat() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7474 unit: public Date getCreatedDate() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7475 unit: public void setCreatedDate() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7476 unit: public Long getBucketId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7477 unit: public void setBucketId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7478 unit: public Map getMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7479 unit: public void setMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7480 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7481 unit: public String getUrl() file: server/catgenome/src/main/java/com/epam/catgenome/entity/UrlWithAliasItem.java start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7482 unit: public void setUrl() file: server/catgenome/src/main/java/com/epam/catgenome/entity/UrlWithAliasItem.java start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7483 unit: public String getAlias() file: server/catgenome/src/main/java/com/epam/catgenome/entity/UrlWithAliasItem.java start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7484 unit: public void setAlias() file: server/catgenome/src/main/java/com/epam/catgenome/entity/UrlWithAliasItem.java start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7485 unit: public String getSampleName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7486 unit: public void setSampleName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7487 unit: public String getHugoSymbol() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7488 unit: public void setHugoSymbol() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7489 unit: public int getEntrezGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7490 unit: public void setEntrezGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 143 end line: 145 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7491 unit: public String getCenter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7492 unit: public void setCenter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 151 end line: 153 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7493 unit: public String getNcbiBuild() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 155 end line: 157 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7494 unit: public void setNcbiBuild() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 159 end line: 161 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7495 unit: public String getChr() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 163 end line: 165 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7496 unit: public void setChr() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 167 end line: 169 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7497 unit: public StrandSerializable getStrand() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 171 end line: 173 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7498 unit: public void setStrand() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 175 end line: 177 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7499 unit: public VariantClassification getVariantClassification() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 179 end line: 181 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7500 unit: public void setVariantClassification() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 183 end line: 185 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7501 unit: public VariationType getVariationType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 187 end line: 189 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7502 unit: public void setVariationType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 191 end line: 193 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7503 unit: public String getRef() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 195 end line: 197 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7504 unit: public void setRef() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 199 end line: 201 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7505 unit: public String getTumorSeqAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 203 end line: 205 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7506 unit: public void setTumorSeqAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 207 end line: 209 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7507 unit: public String getTumorSeqAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 211 end line: 213 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7508 unit: public void setTumorSeqAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 215 end line: 217 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7509 unit: public String getDbSnpRS() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 219 end line: 221 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7510 unit: public void setDbSnpRS() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 223 end line: 225 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7511 unit: public String getDbSnpValStatus() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 227 end line: 229 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7512 unit: public void setDbSnpValStatus() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 231 end line: 233 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7513 unit: public String getTumorSampleBarcode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 235 end line: 237 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7514 unit: public void setTumorSampleBarcode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 239 end line: 241 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7515 unit: public String getMatchedNormSampleBarcode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 243 end line: 245 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7516 unit: public void setMatchedNormSampleBarcode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 247 end line: 249 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7517 unit: public String getMatchNormSeqAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 251 end line: 253 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7518 unit: public void setMatchNormSeqAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 255 end line: 257 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7519 unit: public String getMatchNormSeqAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 259 end line: 261 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7520 unit: public void setMatchNormSeqAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 263 end line: 265 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7521 unit: public String getTumorValidationAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 267 end line: 269 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7522 unit: public void setTumorValidationAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 271 end line: 273 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7523 unit: public String getTumorValidationAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 275 end line: 277 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7524 unit: public void setTumorValidationAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 279 end line: 281 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7525 unit: public String getMatchNormValidationAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 283 end line: 285 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7526 unit: public void setMatchNormValidationAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 287 end line: 289 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7527 unit: public String getMatchNormValidationAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 291 end line: 293 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7528 unit: public void setMatchNormValidationAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 295 end line: 297 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7529 unit: public VerificationStatus getVerificationStatus() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 299 end line: 301 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7530 unit: public void setVerificationStatus() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 303 end line: 305 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7531 unit: public ValidationStatus getValidationStatus() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 307 end line: 309 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7532 unit: public void setValidationStatus() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 311 end line: 313 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7533 unit: public MutationStatus getMutationStatus() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 315 end line: 317 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7534 unit: public void setMutationStatus() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 319 end line: 321 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7535 unit: public String getSequencingPhase() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 323 end line: 325 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7536 unit: public void setSequencingPhase() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 327 end line: 329 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7537 unit: public SequenceSource getSequenceSource() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 331 end line: 333 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7538 unit: public void setSequenceSource() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 335 end line: 337 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7539 unit: public String getValidationMethod() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 339 end line: 341 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7540 unit: public void setValidationMethod() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 343 end line: 345 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7541 unit: public Integer getScore() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 347 end line: 349 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7542 unit: public void setScore() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 351 end line: 353 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7543 unit: public String getBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 355 end line: 357 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7544 unit: public void setBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 359 end line: 361 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7545 unit: public String getSequencer() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 363 end line: 365 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7546 unit: public void setSequencer() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 367 end line: 369 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7547 unit: public String getTumorSampleUUID() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 371 end line: 373 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7548 unit: public void setTumorSampleUUID() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 375 end line: 377 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7549 unit: public String getMatchedNormSampleUUID() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 379 end line: 381 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7550 unit: public void setMatchedNormSampleUUID() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 383 end line: 385 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7551 unit: public MafFile() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafFile.java start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7552 unit: public String getRealPath() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafFile.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7553 unit: public void setRealPath() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafFile.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7554 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafFile.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7555 unit: public BiologicalDataItem getIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/IndexedDataItem.java start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7556 unit: public void setIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/IndexedDataItem.java start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7557 unit: public BedFile() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedFile.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7558 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedFile.java start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7559 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7560 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7561 unit: public Float getScore() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7562 unit: public void setScore() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7563 unit: public Strand getStrand() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7564 unit: public void setStrand() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7565 unit: public Integer getThickStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7566 unit: public void setThickStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7567 unit: public Integer getThickEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7568 unit: public void setThickEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7569 unit: public String getRgb() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7570 unit: public void setRgb() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7571 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 157 end line: 159 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7572 unit: public Integer getBlockCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 161 end line: 163 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7573 unit: public void setBlockCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 165 end line: 167 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7574 unit: public void setBlockSizes() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 173 end line: 175 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7575 unit: public void setBlockStarts() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 181 end line: 183 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7576 unit: public String getId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 185 end line: 187 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7577 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 189 end line: 191 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7578 unit: public String getDescription() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 193 end line: 195 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7579 unit: public void setDescription() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 197 end line: 199 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7580 unit: public Map getAdditional() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 201 end line: 203 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7581 unit: public void setAdditional() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 205 end line: 207 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7582 unit: public List getMapping() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/FileExtensionMapping.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7583 unit: public String getRole() file: server/catgenome/src/main/java/com/epam/catgenome/entity/llm/LLMRole.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7584 unit: public Track() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Track.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7585 unit: public final List getBlocks() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Track.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7586 unit: public final void setBlocks() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Track.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7587 unit: public SampledTrack() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/SampledTrack.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7588 unit: public void setTracks() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/SampledTrack.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7589 unit: public TrackType getType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/AbstractTrack.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7590 unit: public final void setType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/AbstractTrack.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7591 unit: public Integer getEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/AbstractTrack.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7592 unit: public void setEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/AbstractTrack.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7593 unit: public Integer getStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/AbstractTrack.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7594 unit: public void setStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/AbstractTrack.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7595 unit: public Double getScaleFactor() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/AbstractTrack.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7596 unit: public void setScaleFactor() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/AbstractTrack.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7597 unit: public Chromosome getChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/AbstractTrack.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7598 unit: public void setChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/AbstractTrack.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7599 unit: public ReferenceTrackMode getMode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/AbstractTrack.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7600 unit: public void setMode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/AbstractTrack.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7601 unit: public Long getProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/AbstractTrack.java start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7602 unit: public void setProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/AbstractTrack.java start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7603 unit: public Block() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Block.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7604 unit: public final Integer getEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Block.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7605 unit: public final void setEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Block.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7606 unit: public final Integer getStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Block.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7607 unit: public final void setStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Block.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7608 unit: public FsDirectory() file: server/catgenome/src/main/java/com/epam/catgenome/entity/file/FsDirectory.java start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7609 unit: public String getPath() file: server/catgenome/src/main/java/com/epam/catgenome/entity/file/FsDirectory.java start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7610 unit: public void setPath() file: server/catgenome/src/main/java/com/epam/catgenome/entity/file/FsDirectory.java start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7611 unit: public Integer getFileCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/file/FsDirectory.java start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7612 unit: public void setFileCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/file/FsDirectory.java start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7613 unit: public FsItemType getType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/file/AbstractFsItem.java start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7614 unit: public FsFile() file: server/catgenome/src/main/java/com/epam/catgenome/entity/file/FsFile.java start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7615 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/file/FsFile.java start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7616 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/file/FsFile.java start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7617 unit: public BiologicalDataItemFormat getFormat() file: server/catgenome/src/main/java/com/epam/catgenome/entity/file/FsFile.java start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7618 unit: public void setFormat() file: server/catgenome/src/main/java/com/epam/catgenome/entity/file/FsFile.java start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7619 unit: public Long getSize() file: server/catgenome/src/main/java/com/epam/catgenome/entity/file/FsFile.java start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7620 unit: public void setSize() file: server/catgenome/src/main/java/com/epam/catgenome/entity/file/FsFile.java start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7621 unit: public AbstractHierarchicalEntity() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AbstractHierarchicalEntity.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7622 unit: public AbstractHierarchicalEntity() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AbstractHierarchicalEntity.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7623 unit: public AbstractHierarchicalEntity() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AbstractHierarchicalEntity.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7624 unit: public AbstractSecuredEntity() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AbstractSecuredEntity.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7625 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AbstractSecuredEntity.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7626 unit: public AclSecuredEntry() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AclSecuredEntry.java start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7627 unit: public void addPermission() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AclSecuredEntry.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7628 unit: public Long getRoleId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/person/PersonRole.java start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7629 unit: public String getPasswordHash() file: server/catgenome/src/main/java/com/epam/catgenome/entity/person/Person.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7630 unit: public void setPasswordHash() file: server/catgenome/src/main/java/com/epam/catgenome/entity/person/Person.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7631 unit: public String getEmail() file: server/catgenome/src/main/java/com/epam/catgenome/entity/person/Person.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7632 unit: public void setEmail() file: server/catgenome/src/main/java/com/epam/catgenome/entity/person/Person.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7633 unit: public PersonRole getRole() file: server/catgenome/src/main/java/com/epam/catgenome/entity/person/Person.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7634 unit: public void setRole() file: server/catgenome/src/main/java/com/epam/catgenome/entity/person/Person.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7635 unit: public Long getId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/person/Person.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7636 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/person/Person.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7637 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/person/Person.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7638 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/person/Person.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7639 unit: public WigFile() file: server/catgenome/src/main/java/com/epam/catgenome/entity/wig/WigFile.java start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7640 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/wig/WigFile.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7641 unit: public Wig() file: server/catgenome/src/main/java/com/epam/catgenome/entity/wig/Wig.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7642 unit: public Float getValue() file: server/catgenome/src/main/java/com/epam/catgenome/entity/wig/Wig.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7643 unit: public void setValue() file: server/catgenome/src/main/java/com/epam/catgenome/entity/wig/Wig.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7644 unit: public String getQualities() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7645 unit: public void setQualities() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7646 unit: public String getPairedReadName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7647 unit: public void setPairedReadName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7648 unit: public List getDifferentBase() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7649 unit: public void setDifferentBase() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7650 unit: public String getHeadSequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7651 unit: public void setHeadSequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7652 unit: public String getTailSequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7653 unit: public void setTailSequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7654 unit: public String getRName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7655 unit: public void setRName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7656 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7657 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 138 end line: 140 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7658 unit: public Boolean getStand() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7659 unit: public void setStand() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 146 end line: 148 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7660 unit: public Integer getMappingQuality() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 150 end line: 152 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7661 unit: public void setMappingQuality() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7662 unit: public Integer getTLen() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7663 unit: public void setTLen() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 162 end line: 164 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7664 unit: public String getRNext() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 166 end line: 168 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7665 unit: public void setRNext() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7666 unit: public List getCigar() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 174 end line: 176 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7667 unit: public void setCigar() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 178 end line: 180 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7668 unit: public Integer getFlagMask() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7669 unit: public void setFlagMask() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 186 end line: 188 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7670 unit: public String getCigarString() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 190 end line: 192 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7671 unit: public void setCigarString() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 194 end line: 196 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7672 unit: public Integer getPNext() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 198 end line: 200 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7673 unit: public void setPNext() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 202 end line: 204 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7674 unit: public List getTags() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 206 end line: 208 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7675 unit: public void setTags() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 210 end line: 212 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7676 unit: public String getSequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 214 end line: 216 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7677 unit: public void setSequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 218 end line: 220 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7678 unit: public String getReadGroup() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 222 end line: 224 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7679 unit: public void setReadGroup() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/Read.java start line: 226 end line: 228 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7680 unit: public String getTag() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/NgbSamTagAndValue.java start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7681 unit: public void setTag() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/NgbSamTagAndValue.java start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7682 unit: public Object getValue() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/NgbSamTagAndValue.java start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7683 unit: public void setValue() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/NgbSamTagAndValue.java start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7684 unit: public static List fromSAMTags() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/NgbSamTagAndValue.java start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7685 unit: public BamFile() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamFile.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7686 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamFile.java start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7687 unit: public int getMatch() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7688 unit: public void setMatch() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7689 unit: public int getMismatch() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7690 unit: public void setMismatch() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7691 unit: public int getRepMatch() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7692 unit: public void setRepMatch() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7693 unit: public int getqGapCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7694 unit: public void setqGapCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7695 unit: public int gettGapCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7696 unit: public void settGapCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7697 unit: public int getqSize() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7698 unit: public void setqSize() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7699 unit: public int getNs() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7700 unit: public void setNs() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7701 unit: public int getqGapBases() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7702 unit: public void setqGapBases() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7703 unit: public int gettGapBases() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7704 unit: public void settGapBases() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7705 unit: public String getChr() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7706 unit: public void setChr() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7707 unit: public int getScore() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7708 unit: public void setScore() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7709 unit: public StrandSerializable getStrand() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 143 end line: 145 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7710 unit: public void setStrand() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7711 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 151 end line: 153 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7712 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/PSLRecord.java start line: 155 end line: 157 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7713 unit: public BamReferenceBuffer() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamReferenceBuffer.java start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7714 unit: public String getBuffer() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamReferenceBuffer.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7715 unit: public void setBuffer() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamReferenceBuffer.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7716 unit: public long getId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/TrackDirectionType.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7717 unit: public BasePosition() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BasePosition.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7718 unit: public String getBase() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BasePosition.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7719 unit: public void setBase() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BasePosition.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7720 unit: public Integer getRelativePosition() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BasePosition.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7721 unit: public void setRelativePosition() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BasePosition.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7722 unit: public int getStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/SpliceJunctionsEntity.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7723 unit: public void setStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/SpliceJunctionsEntity.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7724 unit: public int getEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/SpliceJunctionsEntity.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7725 unit: public void setEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/SpliceJunctionsEntity.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7726 unit: public int getCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/SpliceJunctionsEntity.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7727 unit: public void setCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/SpliceJunctionsEntity.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7728 unit: public void inc() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/SpliceJunctionsEntity.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7729 unit: public boolean isStrand() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/SpliceJunctionsEntity.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7730 unit: public void setStrand() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/SpliceJunctionsEntity.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7731 unit: public BamQueryOption() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 60 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7732 unit: public Boolean getShowClipping() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7733 unit: public void setShowClipping() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7734 unit: public TrackDirectionType getTrackDirection() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7735 unit: public void setTrackDirection() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7736 unit: public String getChromosomeName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7737 unit: public void setChromosomeName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7738 unit: public Integer getFrame() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7739 unit: public void setFrame() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7740 unit: public Integer getCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 132 end line: 134 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7741 unit: public void setCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 136 end line: 138 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7742 unit: public Boolean getShowSpliceJunction() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7743 unit: public void setShowSpliceJunction() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 144 end line: 146 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7744 unit: public void setRefID() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7745 unit: public Long getRefID() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 152 end line: 154 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7746 unit: public boolean isDownSampling() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 156 end line: 158 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7747 unit: public void setDownSampling() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7748 unit: public boolean isFilterNotPrimary() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 164 end line: 166 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7749 unit: public void setFilterNotPrimary() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 168 end line: 170 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7750 unit: public boolean isFilterVendorQualityFail() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 172 end line: 174 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7751 unit: public void setFilterVendorQualityFail() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 176 end line: 178 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7752 unit: public boolean isFilterDuplicate() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 180 end line: 182 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7753 unit: public void setFilterDuplicate() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 184 end line: 186 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7754 unit: public boolean isFilterSupplementaryAlignment() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 188 end line: 190 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7755 unit: public void setFilterSupplementaryAlignment() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 192 end line: 194 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7756 unit: public BamTrackMode getMode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 196 end line: 198 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7757 unit: public void setMode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamQueryOption.java start line: 200 end line: 202 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7758 unit: public BamTrack() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrack.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7759 unit: public String getReferenceBuffer() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrack.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7760 unit: public void setReferenceBuffer() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrack.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7761 unit: public List getDownsampleCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrack.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7762 unit: public void setDownsampleCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrack.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7763 unit: public List getBaseCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrack.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7764 unit: public void setBaseCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrack.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7765 unit: public List getSpliceJunctions() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrack.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7766 unit: public void setSpliceJunctions() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrack.java start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7767 unit: public Integer getMinPosition() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrack.java start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7768 unit: public void setMinPosition() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrack.java start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7769 unit: public List getRegions() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrack.java start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7770 unit: public void setRegions() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrack.java start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7771 unit: public Integer getCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrackQuery.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7772 unit: public void setCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrackQuery.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7773 unit: public Integer getFrame() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrackQuery.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7774 unit: public void setFrame() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BamTrackQuery.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7775 unit: public Integer getcCov() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7776 unit: public void setcCov() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7777 unit: public Integer getaCov() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7778 unit: public void setaCov() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7779 unit: public Integer gettCov() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7780 unit: public void settCov() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7781 unit: public Integer getgCov() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7782 unit: public void setgCov() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7783 unit: public Integer getnCov() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7784 unit: public void setnCov() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7785 unit: public Integer getDelCov() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7786 unit: public void setDelCov() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7787 unit: public Integer getInsCov() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7788 unit: public void setInsCov() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7789 unit: public Float getValue() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7790 unit: public void setValue() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7791 unit: public String getText() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7792 unit: public void setText() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7793 unit: public Long getGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7794 unit: public void setGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7795 unit: public Long getCdsStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7796 unit: public void setCdsStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7797 unit: public Long getCdsEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7798 unit: public void setCdsEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7799 unit: public Long getTripleStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7800 unit: public void setTripleStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7801 unit: public Long getTripleEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7802 unit: public void setTripleEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7803 unit: public Long getIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7804 unit: public void setIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7805 unit: public ProteinSequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequence.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7806 unit: public String getText() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequence.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7807 unit: public void setText() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequence.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7808 unit: public Long getIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequence.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7809 unit: public void setIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequence.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7810 unit: public String getTranscriptId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceInfo.java start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7811 unit: public void setTranscriptId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceInfo.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7812 unit: public List getProteinSequences() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceInfo.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7813 unit: public void setProteinSequences() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceInfo.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7814 unit: public BaseEntity() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BaseEntity.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7815 unit: public final Long getId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BaseEntity.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7816 unit: public final void setId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BaseEntity.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7817 unit: public final String getName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BaseEntity.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7818 unit: public final void setName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BaseEntity.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7819 unit: public String getPrettyName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BaseEntity.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7820 unit: public void setPrettyName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BaseEntity.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7821 unit: public Long getId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/user/DefaultRoles.java start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7822 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/user/DefaultRoles.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7823 unit: public String getField() file: server/catgenome/src/main/java/com/epam/catgenome/entity/AbstractFilterForm.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7824 unit: public void setField() file: server/catgenome/src/main/java/com/epam/catgenome/entity/AbstractFilterForm.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7825 unit: public boolean isDesc() file: server/catgenome/src/main/java/com/epam/catgenome/entity/AbstractFilterForm.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7826 unit: public void setDesc() file: server/catgenome/src/main/java/com/epam/catgenome/entity/AbstractFilterForm.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7827 unit: public String getPosition() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/PBDGaneEntity.java start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7828 unit: public void setPosition() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/PBDGaneEntity.java start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7829 unit: public String getMessage() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneTranscript.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7830 unit: public void setMessage() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneTranscript.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7831 unit: public ResultStatus getStatus() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneTranscript.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7832 unit: public void setStatus() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneTranscript.java start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7833 unit: public List getDomain() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Transcript.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7834 unit: public void setDomain() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Transcript.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7835 unit: public List getExon() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Transcript.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7836 unit: public void setExon() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Transcript.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7837 unit: public List getUtr() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Transcript.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7838 unit: public void setUtr() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Transcript.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7839 unit: public List getPdb() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Transcript.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7840 unit: public void setPdb() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Transcript.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7841 unit: public List getSecondaryStructure() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Transcript.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7842 unit: public void setSecondaryStructure() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Transcript.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7843 unit: public String getBioType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Transcript.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7844 unit: public void setBioType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Transcript.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7845 unit: public GeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFile.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7846 unit: public ExternalDBType getExternalDBType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFile.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7847 unit: public void setExternalDBType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFile.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7848 unit: public ExternalDB getExternalDB() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFile.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7849 unit: public void setExternalDB() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFile.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7850 unit: public String getExternalDBOrganism() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFile.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7851 unit: public void setExternalDBOrganism() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFile.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7852 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFile.java start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7853 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/Gene.java start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7854 unit: public Long getStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/BaseGeneEntity.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7855 unit: public void setStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/BaseGeneEntity.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7856 unit: public Long getEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/BaseGeneEntity.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7857 unit: public void setEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/BaseGeneEntity.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7858 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/BaseGeneEntity.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7859 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/BaseGeneEntity.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7860 unit: public String getId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/BaseGeneEntity.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7861 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/BaseGeneEntity.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7862 unit: public String getType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/BaseGeneEntity.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7863 unit: public void setType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/BaseGeneEntity.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7864 unit: public String getStrand() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/BaseGeneEntity.java start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7865 unit: public void setStrand() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/BaseGeneEntity.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7866 unit: public boolean filterEmpty() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 303 end line: 305 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7867 unit: public List getAdditionalFields() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 307 end line: 309 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7868 unit: public Integer getPage() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneFilterForm.java start line: 312 end line: 314 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7869 unit: public ProjectItem() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/ProjectItem.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7870 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/ProjectItem.java start line: 64 end line: 66 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 7871 unit: public Project() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7872 unit: public List getChildren() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 79 end line: 81 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 7873 unit: public AbstractSecuredEntity getParent() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 138 end line: 140 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 7874 unit: public List getItems() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7875 unit: public void setItems() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 146 end line: 148 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7876 unit: public Integer getItemsCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 150 end line: 152 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7877 unit: public void setItemsCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7878 unit: public Map getItemsCountPerFormat() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7879 unit: public void setItemsCountPerFormat() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 162 end line: 164 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7880 unit: public Date getLastOpenedDate() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 166 end line: 168 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7881 unit: public void setLastOpenedDate() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7882 unit: public List getNestedProjects() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 174 end line: 176 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7883 unit: public void setNestedProjects() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 178 end line: 180 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7884 unit: public Long getParentId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7885 unit: public void setParentId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 186 end line: 188 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7886 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 191 end line: 193 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7887 unit: public Map getMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 195 end line: 197 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7888 unit: public void setMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 199 end line: 201 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7889 unit: public List getNotes() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 203 end line: 205 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7890 unit: public void setNotes() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 207 end line: 209 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7891 unit: public List getDescriptions() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 211 end line: 213 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7892 unit: public void setDescriptions() file: server/catgenome/src/main/java/com/epam/catgenome/entity/project/Project.java start line: 215 end line: 217 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7893 unit: public BooleanQuery computeQuery() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7894 unit: private boolean isFilterEmpty() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 115 end line: 117 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 7895 unit: public void setVariationTypes() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 321 end line: 323 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7896 unit: public List getChromosomeIds() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 325 end line: 327 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7897 unit: public void setChromosomeIds() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 329 end line: 331 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7898 unit: public void setGenes() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 333 end line: 335 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7899 unit: public void setEffects() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 341 end line: 343 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7900 unit: public void setImpacts() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 349 end line: 351 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7901 unit: public String getFailedFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 353 end line: 355 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7902 unit: public void setFailedFilter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 357 end line: 359 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7903 unit: public void setVcfFileIdsByProject() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 373 end line: 375 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7904 unit: public Map getAdditionalFilters() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 377 end line: 379 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7905 unit: public void setAdditionalFilters() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 381 end line: 383 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7906 unit: public List getQuality() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 385 end line: 387 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7907 unit: public void setQuality() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 389 end line: 391 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7908 unit: public List getAdditionalFields() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 393 end line: 395 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7909 unit: public void setInfoFields() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 397 end line: 399 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7910 unit: public Boolean getExon() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 401 end line: 403 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7911 unit: public void setExon() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 405 end line: 407 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7912 unit: public Integer getPage() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 409 end line: 411 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7913 unit: public void setPage() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 413 end line: 415 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7914 unit: public Integer getStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 417 end line: 419 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7915 unit: public void setStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 421 end line: 423 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7916 unit: public Integer getEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 425 end line: 427 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7917 unit: public void setEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 429 end line: 431 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7918 unit: public void setSampleNames() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 437 end line: 439 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7919 unit: public FilterSection() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 450 end line: 452 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7920 unit: public T getField() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 458 end line: 460 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7921 unit: public boolean isConjunction() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 462 end line: 464 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7922 unit: public void setField() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 466 end line: 468 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7923 unit: public void setConjunction() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 470 end line: 472 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7924 unit: public List getVcfFileIds() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 476 end line: 478 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7925 unit: public int getIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfSample.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7926 unit: public void setIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfSample.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7927 unit: public final Long getId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VariationQuery.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7928 unit: public final void setId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VariationQuery.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7929 unit: public final Long getSampleId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VariationQuery.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7930 unit: public final void setSampleId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VariationQuery.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7931 unit: public final Integer getPosition() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VariationQuery.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7932 unit: public final void setPosition() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VariationQuery.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7933 unit: public final Long getChromosomeId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VariationQuery.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7934 unit: public final void setChromosomeId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VariationQuery.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7935 unit: public Long getProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VariationQuery.java start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7936 unit: public void setProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VariationQuery.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7937 unit: public VcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFile.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7938 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFile.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7939 unit: public static VariationType forMafValue() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VariationType.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7940 unit: public String toMafFileValue() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VariationType.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7941 unit: public String getValue() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/Filter.java start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7942 unit: public void setValue() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/Filter.java start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7943 unit: public String getDescription() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/Filter.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7944 unit: public void setDescription() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/Filter.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7945 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/InfoItem.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7946 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/InfoItem.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7947 unit: public VCFHeaderLineType getType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/InfoItem.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7948 unit: public void setType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/InfoItem.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7949 unit: public String getDescription() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/InfoItem.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7950 unit: public void setDescription() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/InfoItem.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7951 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/InfoItem.java start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7952 unit: public String getBucketName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bucket/Bucket.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7953 unit: public void setBucketName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bucket/Bucket.java start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7954 unit: public String getAccessKeyId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bucket/Bucket.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7955 unit: public void setAccessKeyId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bucket/Bucket.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7956 unit: public String getSecretAccessKey() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bucket/Bucket.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7957 unit: public void setSecretAccessKey() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bucket/Bucket.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7958 unit: public AbstractSecuredEntity getParent() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bucket/Bucket.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7959 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bucket/Bucket.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7960 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/lineage/LineageTree.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7961 unit: public final int getSignature() file: server/catgenome/src/main/java/com/epam/catgenome/entity/nucleotid/Signature.java start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7962 unit: public static int fastaByteFormatToByteNibFormat() file: server/catgenome/src/main/java/com/epam/catgenome/entity/nucleotid/NibByteFormat.java start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 7963 unit: public static int fastaByteFormatToByteNibFormat() file: server/catgenome/src/main/java/com/epam/catgenome/entity/nucleotid/NibByteFormat.java start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7964 unit: public final byte getByteCode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/nucleotid/NibByteFormat.java start line: 199 end line: 201 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7965 unit: public final char getNucleobase() file: server/catgenome/src/main/java/com/epam/catgenome/entity/nucleotid/NibByteFormat.java start line: 203 end line: 205 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7966 unit: public final byte getCharCode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/nucleotid/NibByteFormat.java start line: 207 end line: 209 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7967 unit: public static ExternalDBType getById() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ExternalDBType.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7968 unit: public long getId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ExternalDBType.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7969 unit: public String getStructureId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimStructure.java start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7970 unit: public void setStructureId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimStructure.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7971 unit: public String getStructureTitle() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimStructure.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7972 unit: public void setStructureTitle() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimStructure.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7973 unit: public String getClassification() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimStructure.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7974 unit: public void setClassification() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimStructure.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7975 unit: public List getEntities() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimStructure.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7976 unit: public void setEntities() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimStructure.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7977 unit: public void addToEntities() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimStructure.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7978 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ChainMinMax.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7979 unit: public int getStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ChainMinMax.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7980 unit: public void setStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ChainMinMax.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7981 unit: public int getEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ChainMinMax.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7982 unit: public void setEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ChainMinMax.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7983 unit: public int getOtherStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ChainMinMax.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7984 unit: public void setOtherStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ChainMinMax.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7985 unit: public int getOtherEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ChainMinMax.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7986 unit: public void setOtherEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ChainMinMax.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7987 unit: public String getDbName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ExternalDB.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7988 unit: public long getId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ExternalDB.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7989 unit: public static ExternalDB getById() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/ExternalDB.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7990 unit: public static HomologType getById() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/homolog/HomologType.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7991 unit: public static HomologType getByName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/homolog/HomologType.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7992 unit: public String getCompound() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimEntity.java start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7993 unit: public void setCompound() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimEntity.java start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7994 unit: public String getChainId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimEntity.java start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7995 unit: public void setChainId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimEntity.java start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7996 unit: public Integer getPdbStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimEntity.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7997 unit: public void setPdbStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimEntity.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 7998 unit: public Integer getPdbEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimEntity.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 7999 unit: public void setPdbEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimEntity.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8000 unit: public Integer getUnpStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimEntity.java start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8001 unit: public void setUnpStart() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimEntity.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8002 unit: public Integer getUnpEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimEntity.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8003 unit: public void setUnpEnd() file: server/catgenome/src/main/java/com/epam/catgenome/entity/externaldb/DimEntity.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8004 unit: public int getId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/blast/BlastTaskStatus.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8005 unit: public boolean isFinal() file: server/catgenome/src/main/java/com/epam/catgenome/entity/blast/BlastTaskStatus.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8006 unit: public static BlastTaskStatus getById() file: server/catgenome/src/main/java/com/epam/catgenome/entity/blast/BlastTaskStatus.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8007 unit: public Long getTypeId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/blast/BlastDatabaseType.java start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8008 unit: public Long getSourceId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/blast/BlastDatabaseSource.java start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8009 unit: public String getGroupName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/Group.java start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8010 unit: public void setGroupName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/Group.java start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8011 unit: public Integer getEntriesCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/Group.java start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8012 unit: public void setEntriesCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/Group.java start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8013 unit: public GeneIndexEntry() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/GeneIndexEntry.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8014 unit: public String getCustomFeatureType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/GeneIndexEntry.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8015 unit: public String getFileValue() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/FeatureType.java start line: 180 end line: 182 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8016 unit: public boolean isExceedsLimit() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8017 unit: public void setExceedsLimit() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8018 unit: public List getEntries() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8019 unit: public void setEntries() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8020 unit: public int getTotalResultsCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8021 unit: public void setTotalResultsCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8022 unit: public Integer getTotalPagesCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8023 unit: public void setTotalPagesCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8024 unit: public Pointer getPointer() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8025 unit: public void setPointer() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8026 unit: public static IndexSearchResult empty() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8027 unit: public VcfIndexEntry() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/VcfIndexEntry.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8028 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/FeatureIndexEntry.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8029 unit: public String getCustomFeatureType() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/FeatureIndexEntry.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8030 unit: public BookmarkIndexEntry() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/BookmarkIndexEntry.java start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8031 unit: public Bookmark getBookmark() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/BookmarkIndexEntry.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8032 unit: public void setBookmark() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/BookmarkIndexEntry.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8033 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/pathway/NGBPathway.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8034 unit: public void incACount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8035 unit: public void incTCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8036 unit: public void incGCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8037 unit: public void incCCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8038 unit: public void incTotalNumberOfNucleotides() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8039 unit: public int getACount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8040 unit: public void setACount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8041 unit: public int getTCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8042 unit: public void setTCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8043 unit: public int getGCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8044 unit: public void setGCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8045 unit: public int getCCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8046 unit: public void setCCount() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8047 unit: public int getTotalNumberOfNucleotides() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8048 unit: public void setTotalNumberOfNucleotides() file: server/catgenome/src/main/java/com/epam/catgenome/entity/NucleotideContent.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8049 unit: public String getId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegRecord.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8050 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegRecord.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8051 unit: public Integer getNumMark() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegRecord.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8052 unit: public void setNumMark() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegRecord.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8053 unit: public Float getSegMean() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegRecord.java start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8054 unit: public void setSegMean() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegRecord.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8055 unit: public SegSample() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegSample.java start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8056 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegSample.java start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8057 unit: public boolean equals() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegSample.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8058 unit: public SegFile() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegFile.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8059 unit: public List getSamples() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegFile.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8060 unit: public void setSamples() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegFile.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8061 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegFile.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8062 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/heatmap/Heatmap.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8063 unit: public static HeatmapDataType getById() file: server/catgenome/src/main/java/com/epam/catgenome/entity/heatmap/HeatmapDataType.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8064 unit: public static HeatmapDataType getByName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/heatmap/HeatmapDataType.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8065 unit: public long getId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItemResourceType.java start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8066 unit: public Long getReferenceId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/FeatureFile.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8067 unit: public void setReferenceId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/FeatureFile.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8068 unit: public Boolean getCompressed() file: server/catgenome/src/main/java/com/epam/catgenome/entity/FeatureFile.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8069 unit: public void setCompressed() file: server/catgenome/src/main/java/com/epam/catgenome/entity/FeatureFile.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8070 unit: public Long getBioDataItemId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/FeatureFile.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8071 unit: public void setBioDataItemId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/FeatureFile.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8072 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/FeatureFile.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8073 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/pdb/PdbFile.java start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8074 unit: public long getId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItemFormat.java start line: 178 end line: 180 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8075 unit: public boolean isIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItemFormat.java start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8076 unit: public Sequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Sequence.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8077 unit: public final String getText() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Sequence.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8078 unit: public final void setText() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Sequence.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8079 unit: public final Float getContentGC() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Sequence.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8080 unit: public final void setContentGC() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Sequence.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8081 unit: public Chromosome getChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Bookmark.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8082 unit: public void setChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Bookmark.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8083 unit: public List getOpenedItems() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Bookmark.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8084 unit: public void setOpenedItems() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Bookmark.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8085 unit: public Integer getStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Bookmark.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8086 unit: public void setStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Bookmark.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8087 unit: public Integer getEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Bookmark.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8088 unit: public void setEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Bookmark.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8089 unit: public AbstractSecuredEntity getParent() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Bookmark.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8090 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Bookmark.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8091 unit: public Chromosome() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Chromosome.java start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8092 unit: public final String getPath() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Chromosome.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8093 unit: public final void setPath() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Chromosome.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8094 unit: public final String getHeader() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Chromosome.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8095 unit: public final void setHeader() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Chromosome.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8096 unit: public final Integer getSize() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Chromosome.java start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8097 unit: public final void setSize() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Chromosome.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8098 unit: public final Long getReferenceId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Chromosome.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8099 unit: public final void setReferenceId() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Chromosome.java start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8100 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Chromosome.java start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8101 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Reference.java start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8102 unit: public String value() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/cytoband/GiemsaStain.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8103 unit: public final String getName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/cytoband/Cytoband.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8104 unit: public final void setName() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/cytoband/Cytoband.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8105 unit: public final String getChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/cytoband/Cytoband.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8106 unit: public final void setChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/cytoband/Cytoband.java start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8107 unit: public final GiemsaStain getGiemsaStain() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/cytoband/Cytoband.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8108 unit: public final void setGiemsaStain() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/cytoband/Cytoband.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8109 unit: public AbstractSecuredEntity getParent() file: server/catgenome/src/main/java/com/epam/catgenome/entity/session/NGBSession.java start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8110 unit: public AclClass getAclClass() file: server/catgenome/src/main/java/com/epam/catgenome/entity/session/NGBSession.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8111 unit: public Long createMafFileId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/maf/MafFileDao.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8112 unit: public void deleteMafFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/maf/MafFileDao.java start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8113 unit: public void setMafFileSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/maf/MafFileDao.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8114 unit: public void setCreateMafFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/maf/MafFileDao.java start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8115 unit: public void setLoadMafFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/maf/MafFileDao.java start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8116 unit: public void setDeleteMafFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/maf/MafFileDao.java start line: 132 end line: 134 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8117 unit: public Long createBedFileId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bed/BedFileDao.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8118 unit: public void deleteBedFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bed/BedFileDao.java start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8119 unit: public void setBedFileSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bed/BedFileDao.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8120 unit: public void setCreateBedFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bed/BedFileDao.java start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8121 unit: public void setLoadBedFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bed/BedFileDao.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8122 unit: public void setDeleteBedFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bed/BedFileDao.java start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8123 unit: public void setPersonSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/person/PersonDao.java start line: 173 end line: 175 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8124 unit: public void setInsertPersonQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/person/PersonDao.java start line: 178 end line: 180 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8125 unit: public void setLoadPersonByIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/person/PersonDao.java start line: 183 end line: 185 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8126 unit: public void setLoadPersonByNameAndPasswordQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/person/PersonDao.java start line: 188 end line: 190 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8127 unit: public void setLoadPersonByNameQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/person/PersonDao.java start line: 193 end line: 195 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8128 unit: public void setUpdatePersonQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/person/PersonDao.java start line: 198 end line: 200 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8129 unit: public List getByItemIdAndUid() file: server/catgenome/src/main/java/com/epam/catgenome/dao/activity/ActivityDao.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8130 unit: public void deleteByItemId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/activity/ActivityDao.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8131 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/activity/ActivityDao.java start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8132 unit: public void setActivitySequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/activity/ActivityDao.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8133 unit: public void setInsertActivityQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/activity/ActivityDao.java start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8134 unit: public void setLoadActivityByItemIdAndUidQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/activity/ActivityDao.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8135 unit: public void setDeleteActivityByItemIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/activity/ActivityDao.java start line: 136 end line: 138 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8136 unit: public void deleteWigFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/wig/WigFileDao.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8137 unit: public void setDeleteWigFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/wig/WigFileDao.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8138 unit: public String getDeleteWigFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/wig/WigFileDao.java start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8139 unit: public Long createWigFileId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/wig/WigFileDao.java start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8140 unit: public void setWigFileSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/wig/WigFileDao.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8141 unit: public void setCreateWigFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/wig/WigFileDao.java start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8142 unit: public void setLoadWigFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/wig/WigFileDao.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8143 unit: public Long createBamFileId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamFileDao.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8144 unit: public void deleteBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamFileDao.java start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8145 unit: public void setDeleteBamFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamFileDao.java start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8146 unit: public void setBamFileSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamFileDao.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8147 unit: public void setLoadBamFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamFileDao.java start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8148 unit: public void setCreateBamFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamFileDao.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8149 unit: public void setSearchByNameBamFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamFileDao.java start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8150 unit: public Long createId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamCoverageDao.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8151 unit: public List loadAll() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamCoverageDao.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8152 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bam/BamCoverageDao.java start line: 141 end line: 143 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8153 unit: public void deleteExpiredUrls() file: server/catgenome/src/main/java/com/epam/catgenome/dao/UrlShorterDao.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8154 unit: public void setLoadUrlByIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/UrlShorterDao.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8155 unit: public void setInsertUrlQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/UrlShorterDao.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8156 unit: public void setDeleteExpiredUrlsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/UrlShorterDao.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8157 unit: public List loadAllUsers() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8158 unit: public void deleteUser() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8159 unit: public void deleteUserGroups() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 150 end line: 152 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8160 unit: public void deleteUserRoles() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 155 end line: 157 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8161 unit: public List loadAllGroups() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 196 end line: 198 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8162 unit: public void assignRoleToUsers() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 231 end line: 233 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8163 unit: public void removeRoleFromUsers() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 236 end line: 238 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8164 unit: private static RowMapper getUserRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 380 end line: 382 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8165 unit: public void setFindUsersByPrefixQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 456 end line: 458 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8166 unit: public void setLoadGroupsByUserIdsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 461 end line: 463 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8167 unit: public void setUserSequence() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 466 end line: 468 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8168 unit: public void setGroupSequence() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 471 end line: 473 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8169 unit: public void setCreateUserQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 476 end line: 478 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8170 unit: public void setAddRoleToUserQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 481 end line: 483 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8171 unit: public void setInsertGroupQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 486 end line: 488 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8172 unit: public void setLoadExistingGroupsFromListQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 491 end line: 493 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8173 unit: public void setInsertUserGroupQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 496 end line: 498 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8174 unit: public void setLoadUserByNameQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 501 end line: 503 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8175 unit: public void setLoadAllUsersQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 506 end line: 508 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8176 unit: public void setLoadUserByIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 511 end line: 513 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8177 unit: public void setUpdateUserQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 516 end line: 518 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8178 unit: public void setDeleteUserRolesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 521 end line: 523 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8179 unit: public void setDeleteUserQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 526 end line: 528 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8180 unit: public void setLoadAllGroupsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 531 end line: 533 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8181 unit: public void setFindGroupsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 536 end line: 538 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8182 unit: public void setLoadUsersByGroupQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 541 end line: 543 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8183 unit: public void setLoadUsersByNamesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 546 end line: 548 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8184 unit: public void setLoadUserByNameAndGroupQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 551 end line: 553 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8185 unit: public void setDeleteUserGroupsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 556 end line: 558 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8186 unit: public void setDeleteUserGroupByUserIdAndGroupIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 561 end line: 563 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8187 unit: public void setLoadUserListQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 566 end line: 568 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8188 unit: public void setDeleteRoleFromUserQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/UserDao.java start line: 571 end line: 573 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8189 unit: public Role createRole() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8190 unit: public void updateRole() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8191 unit: public void deleteRole() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8192 unit: public void deleteRoleReferences() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8193 unit: public List loadAllRoles() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8194 unit: public Optional loadRole() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 143 end line: 145 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8195 unit: public Optional loadRoleByName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8196 unit: public List loadDefaultRoles() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 151 end line: 153 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8197 unit: public void setLoadRolesByUserIdsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 232 end line: 234 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8198 unit: public void setRoleSequence() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 236 end line: 238 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8199 unit: public void setCreateRoleQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 241 end line: 243 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8200 unit: public void setUpdateRoleQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 246 end line: 248 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8201 unit: public void setDeleteRoleQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 251 end line: 253 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8202 unit: public void setLoadAllRolesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 256 end line: 258 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8203 unit: public void setLoadRolesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 261 end line: 263 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8204 unit: public void setLoadRoleQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 266 end line: 268 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8205 unit: public void setLoadRoleByNameQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 271 end line: 273 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8206 unit: public void setDeleteRolesReferencesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 276 end line: 278 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8207 unit: public void setLoadDefaultRolesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 281 end line: 283 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8208 unit: public void setLoadRoleWithUsersQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 286 end line: 288 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8209 unit: public void setLoadRolesWithUsersQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/user/RoleDao.java start line: 291 end line: 293 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8210 unit: public List loadBiologicalDataItems() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 169 end line: 171 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8211 unit: public Integer countBiologicalDataItems() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 180 end line: 182 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8212 unit: public Long createBioItemId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 185 end line: 187 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8213 unit: public void deleteBiologicalDataItem() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 194 end line: 196 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8214 unit: public static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 347 end line: 349 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8215 unit: public static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 351 end line: 353 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8216 unit: public void setInsertBiologicalDataItemQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 658 end line: 660 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8217 unit: public void setLoadBiologicalDataItemsByIdsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 663 end line: 665 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8218 unit: public void setLoadBiologicalDataItemsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 668 end line: 670 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8219 unit: public void setUpdateBiologicalDataItemQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 673 end line: 675 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8220 unit: public void setBiologicalDataItemSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 678 end line: 680 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8221 unit: public void setDeleteBiologicalDataItemQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 683 end line: 685 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8222 unit: public void setLoadBiologicalDataItemsByNameQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 694 end line: 696 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8223 unit: public void setLoadBiologicalDataItemsByNamesStrictQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 699 end line: 701 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8224 unit: public void setUpdateOwnerQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 710 end line: 712 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8225 unit: public void setCountBiologicalDataItemsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/BiologicalDataItemDao.java start line: 715 end line: 717 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8226 unit: public void deleteGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/gene/GeneFileDao.java start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8227 unit: public Long createGeneFileId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/gene/GeneFileDao.java start line: 143 end line: 145 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8228 unit: public void setGeneFileSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/gene/GeneFileDao.java start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8229 unit: public void setCreateGeneFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/gene/GeneFileDao.java start line: 153 end line: 155 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8230 unit: public void setLoadGeneFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/gene/GeneFileDao.java start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8231 unit: public void setLoadAllGeneFilesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/gene/GeneFileDao.java start line: 163 end line: 165 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8232 unit: public void setDeleteGeneFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/gene/GeneFileDao.java start line: 168 end line: 170 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8233 unit: public void setLoadGeneFilesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/gene/GeneFileDao.java start line: 173 end line: 175 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8234 unit: public void setProjectDescriptionSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 159 end line: 161 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8235 unit: public void setSaveProjectDescriptionQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 164 end line: 166 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8236 unit: public void setUpdateProjectDescriptionQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 169 end line: 171 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8237 unit: public void setDeleteProjectDescriptionByProjectIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 174 end line: 176 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8238 unit: public void setDeleteProjectDescriptionByIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 179 end line: 181 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8239 unit: public void setFindProjectDescriptionContentByIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 184 end line: 186 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8240 unit: public void setFindProjectDescriptionsByProjectIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 189 end line: 191 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8241 unit: public void setFindProjectDescriptionByIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 194 end line: 196 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8242 unit: public void setFindProjectDescriptionsByProjectIdsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 199 end line: 201 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8243 unit: public void setFindProjectDescriptionsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDescriptionDao.java start line: 204 end line: 206 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8244 unit: public List loadAllProjects() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8245 unit: public List loadNestedProjects() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 192 end line: 194 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8246 unit: public void updateLastOpenedDate() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 248 end line: 250 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8247 unit: public void deleteProject() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 275 end line: 277 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8248 unit: public void deleteAllProjectNotes() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 421 end line: 423 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8249 unit: public List loadProjectNotes() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 425 end line: 427 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8250 unit: public void deleteProjectItems() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 526 end line: 528 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8251 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 741 end line: 743 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8252 unit: static RowMapper getSimpleItemMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 745 end line: 747 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8253 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/project/ProjectDao.java start line: 790 end line: 792 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8254 unit: public Long createVcfFileId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/vcf/VcfFileDao.java start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8255 unit: public List loadSamplesForFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/vcf/VcfFileDao.java start line: 201 end line: 203 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8256 unit: public Long createBucketFileId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bucket/BucketDao.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8257 unit: public void updateOwner() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bucket/BucketDao.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8258 unit: public void setBucketName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bucket/BucketDao.java start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8259 unit: public void setCreateBucketQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bucket/BucketDao.java start line: 153 end line: 155 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8260 unit: public void setLoadBucketByIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bucket/BucketDao.java start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8261 unit: public void setLoadAllBucketQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bucket/BucketDao.java start line: 163 end line: 165 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8262 unit: public void setUpdateBucketOwnerQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/bucket/BucketDao.java start line: 168 end line: 170 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8263 unit: public void deleteLineageTreeNodes() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeNodeDao.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8264 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeNodeDao.java start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8265 unit: public void deleteLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeDao.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8266 unit: public List loadAllLineageTrees() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeDao.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8267 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeDao.java start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8268 unit: public void deleteLineageTreeEdges() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeEdgeDao.java start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8269 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/lineage/LineageTreeEdgeDao.java start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8270 unit: public void updateTask() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8271 unit: public void deleteTask() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8272 unit: public List loadOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 157 end line: 159 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8273 unit: public List loadExclOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 166 end line: 168 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8274 unit: public void deleteOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 176 end line: 178 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8275 unit: public void deleteExclOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 197 end line: 199 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8276 unit: public List loadTaskParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 219 end line: 221 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8277 unit: public void deleteParameters() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 229 end line: 231 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8278 unit: public void setOrganismSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 445 end line: 447 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8279 unit: public void setExclOrganismSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 450 end line: 452 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8280 unit: public void setTaskParameterSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 455 end line: 457 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8281 unit: public void setInsertTaskQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 460 end line: 462 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8282 unit: public void setLoadTaskByIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 465 end line: 467 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8283 unit: public void setLoadAllTasksQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 470 end line: 472 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8284 unit: public void setUpdateTaskStatusQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 475 end line: 477 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8285 unit: public void setDeleteTaskQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 480 end line: 482 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8286 unit: public void setDeleteTasksQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 485 end line: 487 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8287 unit: public void setInsertTaskOrganismsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 490 end line: 492 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8288 unit: public void setDeleteTaskOrganismsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 495 end line: 497 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8289 unit: public void setLoadTaskOrganismsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 500 end line: 502 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8290 unit: public void setInsertTaskExclOrganismsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 505 end line: 507 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8291 unit: public void setDeleteTaskExclOrganismsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 510 end line: 512 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8292 unit: public void setLoadTaskExclOrganismsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 515 end line: 517 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8293 unit: public void setInsertTaskParametersQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 520 end line: 522 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8294 unit: public void setDeleteTaskParametersQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 525 end line: 527 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8295 unit: public void setLoadTaskParametersQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 530 end line: 532 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8296 unit: public void setDeleteOrganismsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 535 end line: 537 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8297 unit: public void setDeleteExclOrganismsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 540 end line: 542 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8298 unit: public void setDeleteParametersQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 545 end line: 547 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8299 unit: public void setGetTaskCountQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 550 end line: 552 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8300 unit: public void setTaskSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastTaskDao.java start line: 555 end line: 557 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8301 unit: public void deleteDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastDatabaseDao.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8302 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/blast/BlastDatabaseDao.java start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8303 unit: public FeatureIndexFields getField() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/VcfIndexSortField.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8304 unit: public String getFieldName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/VcfIndexSortField.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8305 unit: public static VcfIndexSortField getByName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/VcfIndexSortField.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8306 unit: public SortedIntPoint() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedIntPoint.java start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8307 unit: public void setIntValue() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedIntPoint.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8308 unit: public void setBytesValue() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedIntPoint.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8309 unit: public static void encodeDimension() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedIntPoint.java start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 8310 unit: public static int decodeDimension() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedIntPoint.java start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8311 unit: public void setFloatValue() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedFloatPoint.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8312 unit: public void setBytesValue() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedFloatPoint.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8313 unit: public SortedFloatPoint() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedFloatPoint.java start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8314 unit: public SortedSetFloatPoint() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/SortedSetFloatPoint.java start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8315 unit: public FeatureIndexFields getField() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/GeneIndexSortField.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8316 unit: public String getFieldName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/GeneIndexSortField.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8317 unit: public static GeneIndexSortField getByName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/field/GeneIndexSortField.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8318 unit: public String getFieldName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 212 end line: 214 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8319 unit: public String getGroupName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 216 end line: 218 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8320 unit: public static String getGroupName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 220 end line: 222 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8321 unit: public String getFacetName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 224 end line: 226 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8322 unit: public static String getFacetName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 228 end line: 230 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8323 unit: public long getLuceneIndexMaxSizeForGrouping() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/FeatureIndexDao.java start line: 963 end line: 965 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8324 unit: public void setVcfInfoFields() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/BigVcfDocumentBuilder.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8325 unit: public VCFHeader getVcfHeader() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8326 unit: private boolean isVariableLength() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 232 end line: 234 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8327 unit: public VcfFilterInfo getFilterInfo() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfFeatureIndexBuilder.java start line: 397 end line: 399 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8328 unit: public void setVcfInfoFields() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/VcfDocumentBuilder.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8329 unit: public void setGeneAttributes() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/indexer/GeneDocumentBuilder.java start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8330 unit: public long nextVal() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupDao.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8331 unit: public List nextVal() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupDao.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8332 unit: public void delete() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupDao.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8333 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupDao.java start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8334 unit: public void deleteAll() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneDomainDao.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8335 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneDomainDao.java start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8336 unit: public void deleteAll() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneDescDao.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8337 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneDescDao.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8338 unit: public void deleteAll() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneAliasDao.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8339 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGeneAliasDao.java start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8340 unit: public void delete() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologDatabaseDao.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8341 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologDatabaseDao.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8342 unit: public void delete() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupGeneDao.java start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8343 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/homolog/HomologGroupGeneDao.java start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8344 unit: public void deletePathway() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayDao.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8345 unit: public Long createPathwayId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayDao.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8346 unit: public long getTotalCount() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayDao.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8347 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayDao.java start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8348 unit: public void deletePathwayOrganisms() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayOrganismDao.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8349 unit: public List loadPathwaySpecies() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayOrganismDao.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8350 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pathway/PathwayOrganismDao.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8351 unit: public Long createSegFileId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8352 unit: public List loadSamplesForFile() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 161 end line: 163 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8353 unit: public void setSegFileSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 243 end line: 245 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8354 unit: public void setCreateSegFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 248 end line: 250 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8355 unit: public void setLoadSegFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 253 end line: 255 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8356 unit: public void setDeleteSegFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 258 end line: 260 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8357 unit: public void setCreateSamplesForFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 263 end line: 265 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8358 unit: public void setLoadSamplesForFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 268 end line: 270 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8359 unit: public void setLoadSamplesByFileIdsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 273 end line: 275 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8360 unit: public void setLoadSamplesForFilesByReferenceIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 278 end line: 280 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8361 unit: public void setSegSampleSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 283 end line: 285 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8362 unit: public void setDeleteSamplesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/seg/SegFileDao.java start line: 288 end line: 290 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8363 unit: public void deleteHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8364 unit: public List loadHeatmaps() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8365 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/heatmap/HeatmapDao.java start line: 312 end line: 314 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8366 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8367 unit: public void update() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8368 unit: public void delete() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8369 unit: static Map parseData() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8370 unit: public void setInsertMetadataQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8371 unit: public void setLoadMetadataQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 132 end line: 134 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8372 unit: public void setUpdateMetadataQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8373 unit: public void setDeleteMetadataQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8374 unit: public void setLoadMetadataItemsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/metadata/MetadataDao.java start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8375 unit: public void delete() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pdb/PdbFileDao.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8376 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pdb/PdbFileDao.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8377 unit: static RowMapper getRowMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/pdb/PdbFileDao.java start line: 161 end line: 163 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8378 unit: public Long createReferenceGenomeId() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8379 unit: public void setLoadChromosomeByIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 307 end line: 309 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8380 unit: public List loadAllAnnotationFileIds() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 351 end line: 353 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8381 unit: public void setReferenceGenomeSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 401 end line: 403 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8382 unit: public void setChromosomeSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 406 end line: 408 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8383 unit: public void setCreateChromosomeQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 411 end line: 413 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8384 unit: public void setLoadAllChromosomesByReferenceIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 416 end line: 418 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8385 unit: public void setCreateReferenceGenomeQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 421 end line: 423 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8386 unit: public void setLoadReferenceGenomeByIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 426 end line: 428 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8387 unit: public void setLoadReferenceGenomeByBioIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 431 end line: 433 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8388 unit: public void setLoadAllReferenceGenomesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 436 end line: 438 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8389 unit: public void setDeleteReferenceQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 441 end line: 443 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8390 unit: public void setDeleteReferenceChromosomeQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 446 end line: 448 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8391 unit: public void setLoadBiologicalItemsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 451 end line: 453 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8392 unit: public String getLoadBiologicalItemsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 456 end line: 458 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8393 unit: public void setUpdateReferenceGeneFileIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 461 end line: 463 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8394 unit: public void setLoadAnnotationDataIdsByReferenceIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 466 end line: 468 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8395 unit: public void setLoadAllAnnotationDataIdsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 471 end line: 473 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8396 unit: public void setAddAnnotationDataItemByReferenceIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 476 end line: 478 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8397 unit: public String getDeleteAnnotationDataItemByReferenceIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 481 end line: 483 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8398 unit: public void setDeleteAnnotationDataItemByReferenceIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 486 end line: 488 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8399 unit: public String getLoadGenomeIdsByAnnotationDataItemIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 491 end line: 493 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8400 unit: public void setLoadGenomeIdsByAnnotationDataItemIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 496 end line: 498 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8401 unit: public void setLoadReferenceGenomeByNameQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 501 end line: 503 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8402 unit: public void setUpdateSpeciesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 506 end line: 508 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8403 unit: public void setLoadReferenceGenomesByTaxIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 511 end line: 513 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8404 unit: public void setUpdateProteinSequenceFileQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 516 end line: 518 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8405 unit: static RowMapper getReferenceGenomeMapper() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/ReferenceGenomeDao.java start line: 583 end line: 585 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8406 unit: public List loadAllSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/SpeciesDao.java start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8407 unit: public void deleteSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/SpeciesDao.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8408 unit: public void setLoadSpeciesByVersionQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/SpeciesDao.java start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8409 unit: public void setSaveSpeciesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/SpeciesDao.java start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8410 unit: public void setLoadAllSpeciesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/SpeciesDao.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8411 unit: public void setDeleteSpeciesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/SpeciesDao.java start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8412 unit: public void setUpdateSpeciesQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/SpeciesDao.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8413 unit: public List loadAllBookmarks() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8414 unit: public void deleteBookmark() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8415 unit: public void deleteBookmarkItems() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 168 end line: 170 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8416 unit: public void setBookmarkSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 268 end line: 270 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8417 unit: public void setBookmarkItemSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 273 end line: 275 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8418 unit: public void setInsertBookmarkQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 278 end line: 280 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8419 unit: public void setUpdateBookmarkQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 283 end line: 285 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8420 unit: public void setLoadAllBookmarksQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 288 end line: 290 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8421 unit: public void setInsertBookmarkItemsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 293 end line: 295 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8422 unit: public void setDeleteBookmarkItemsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 298 end line: 300 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8423 unit: public void setLoadBookmarksItemsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 303 end line: 305 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8424 unit: public void setDeleteBookmarkQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 308 end line: 310 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8425 unit: public void setLoadBookmarkByIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 313 end line: 315 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8426 unit: public void setLoadBookmarksByIdsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 318 end line: 320 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8427 unit: public void setSearchBookmarksQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 323 end line: 325 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8428 unit: public void setSearchBookmarkCountQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/reference/BookmarkDao.java start line: 328 end line: 330 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8429 unit: public void setCreateIdQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/DaoHelper.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8430 unit: public void setCreateIdsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/DaoHelper.java start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8431 unit: public String escapeUnderscore() file: server/catgenome/src/main/java/com/epam/catgenome/dao/DaoHelper.java start line: 136 end line: 138 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8432 unit: public void setNgbSessionSequenceName() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 198 end line: 200 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8433 unit: public void setUpdateNgbSessionQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 202 end line: 204 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8434 unit: public void setCreateNgbSessionQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 206 end line: 208 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8435 unit: public void setFilterNgbSessionsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 210 end line: 212 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8436 unit: public void setLoadNgbSessionQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 214 end line: 216 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8437 unit: public void setDeleteNgbSessionQuery() file: server/catgenome/src/main/java/com/epam/catgenome/dao/session/NGBSessionDao.java start line: 218 end line: 220 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8438 unit: public MessageSource getMessageSource() file: server/catgenome/src/main/java/com/epam/catgenome/component/MessageHelper.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8439 unit: public static void setInstance() file: server/catgenome/src/main/java/com/epam/catgenome/component/MessageHelper.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8440 unit: public static String getMessage() file: server/catgenome/src/main/java/com/epam/catgenome/component/MessageHelper.java start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8441 unit: public static String getMessage() file: server/catgenome/src/main/java/com/epam/catgenome/component/MessageHelper.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8442 unit: public final String getCode() file: server/catgenome/src/main/java/com/epam/catgenome/component/MessageCode.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8443 unit: public Integer getViewPortSize() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ExonViewPortQuery.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8444 unit: public void setViewPortSize() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ExonViewPortQuery.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8445 unit: public Integer getCenterPosition() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ExonViewPortQuery.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8446 unit: public void setCenterPosition() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ExonViewPortQuery.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8447 unit: public String getIndexPath() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/IndexedFileRegistrationRequest.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8448 unit: public void setIndexPath() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/IndexedFileRegistrationRequest.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8449 unit: public Long getIndexS3BucketId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/IndexedFileRegistrationRequest.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8450 unit: public void setIndexS3BucketId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/IndexedFileRegistrationRequest.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8451 unit: public BiologicalDataItemResourceType getIndexType() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/IndexedFileRegistrationRequest.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8452 unit: public void setIndexType() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/IndexedFileRegistrationRequest.java start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8453 unit: public BiologicalDataItemResourceType getType() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/ReferenceRegistrationRequest.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8454 unit: public void setType() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/ReferenceRegistrationRequest.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8455 unit: public Long getGeneFileId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/ReferenceRegistrationRequest.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8456 unit: public void setGeneFileId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/ReferenceRegistrationRequest.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8457 unit: public FeatureIndexedFileRegistrationRequest getGeneFileRequest() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/ReferenceRegistrationRequest.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8458 unit: public void setGeneFileRequest() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/ReferenceRegistrationRequest.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8459 unit: public boolean isNoGCContent() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/ReferenceRegistrationRequest.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8460 unit: public void setNoGCContent() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/ReferenceRegistrationRequest.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8461 unit: public Species getSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/ReferenceRegistrationRequest.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8462 unit: public void setSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/ReferenceRegistrationRequest.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8463 unit: public boolean isDoIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/FeatureIndexedFileRegistrationRequest.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8464 unit: public void setDoIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/FeatureIndexedFileRegistrationRequest.java start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8465 unit: public Long getReferenceId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/FileRegistrationRequest.java start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8466 unit: public void setReferenceId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/FileRegistrationRequest.java start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8467 unit: public Long getS3BucketId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/FileRegistrationRequest.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8468 unit: public void setS3BucketId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/FileRegistrationRequest.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8469 unit: public BiologicalDataItemResourceType getType() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/FileRegistrationRequest.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8470 unit: public void setType() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/FileRegistrationRequest.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8471 unit: public String getPath() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/DefaultFileRegistrationRequest.java start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8472 unit: public void setPath() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/DefaultFileRegistrationRequest.java start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8473 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/DefaultFileRegistrationRequest.java start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8474 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/DefaultFileRegistrationRequest.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8475 unit: public String getPrettyName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/DefaultFileRegistrationRequest.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8476 unit: public void setPrettyName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/registration/DefaultFileRegistrationRequest.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8477 unit: public Integer getStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkVO.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8478 unit: public void setStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkVO.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8479 unit: public Integer getEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkVO.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8480 unit: public void setEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkVO.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8481 unit: public Chromosome getChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkVO.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8482 unit: public void setChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkVO.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8483 unit: public List getOpenedItems() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkVO.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8484 unit: public void setOpenedItems() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkVO.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8485 unit: public static List convertTo() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/BookmarkConverter.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8486 unit: public static List convertFrom() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/BookmarkConverter.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8487 unit: public static List convertFrom() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/BookmarkConverter.java start line: 138 end line: 140 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8488 unit: public static List convertTo() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/BookmarkConverter.java start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8489 unit: public List getFiles() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/FilesVO.java start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8490 unit: public void setFiles() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/FilesVO.java start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8491 unit: public String getRoot() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/FilesVO.java start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8492 unit: public void setRoot() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/FilesVO.java start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8493 unit: public String getSeparator() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/FilesVO.java start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8494 unit: public void setSeparator() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/FilesVO.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8495 unit: public final Long getSampleId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/VcfTrackQuery.java start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8496 unit: public final void setSampleId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/VcfTrackQuery.java start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8497 unit: public Species getSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/SpeciesVO.java start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8498 unit: public void setSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/SpeciesVO.java start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8499 unit: public Long getId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8500 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8501 unit: public Long getBioDataItemId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8502 unit: public void setBioDataItemId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8503 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8504 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8505 unit: public BiologicalDataItemResourceType getType() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8506 unit: public void setType() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8507 unit: public String getPath() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8508 unit: public void setPath() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8509 unit: public BiologicalDataItemFormat getFormat() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8510 unit: public void setFormat() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8511 unit: public Date getCreatedDate() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8512 unit: public void setCreatedDate() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8513 unit: public Long getReferenceId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8514 unit: public void setReferenceId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8515 unit: public Boolean getCompressed() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8516 unit: public void setCompressed() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/BookmarkItemVO.java start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8517 unit: public String getSearch() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/GeneSearchQuery.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8518 unit: public void setSearch() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/GeneSearchQuery.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8519 unit: public void setVcfIdsByProject() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/GeneSearchQuery.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8520 unit: public String getId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8521 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8522 unit: public String getMd5checksum() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8523 unit: public void setMd5checksum() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8524 unit: public Integer getNcbiTaxonId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8525 unit: public void setNcbiTaxonId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8526 unit: public String getDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8527 unit: public void setDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8528 unit: public String getAssemblyId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8529 unit: public void setAssemblyId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 132 end line: 134 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8530 unit: public String getSourceURI() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 136 end line: 138 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8531 unit: public void setSourceURI() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8532 unit: public List getSourceAccessions() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 144 end line: 146 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8533 unit: public void setSourceAccessions() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8534 unit: public Boolean getDerived() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 152 end line: 154 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8535 unit: public void setDerived() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 156 end line: 158 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8536 unit: public List getReferenceIds() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8537 unit: public void setReferenceIds() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceSet.java start line: 164 end line: 166 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8538 unit: public List getCallSets() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/CallSetSearch.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8539 unit: public void setCallSets() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/CallSetSearch.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8540 unit: public String getNextPageToken() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/CallSetSearch.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8541 unit: public void setNextPageToken() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/CallSetSearch.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8542 unit: public String getVariantName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8543 unit: public void setVariantName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8544 unit: public List getCallSetIds() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8545 unit: public void setCallSetIds() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8546 unit: public String getReferenceName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8547 unit: public void setReferenceName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8548 unit: public String getStart() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8549 unit: public void setStart() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8550 unit: public String getEnd() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8551 unit: public void setEnd() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8552 unit: public String getPageToken() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8553 unit: public void setPageToken() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8554 unit: public String getPageSize() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 141 end line: 143 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8555 unit: public void setPageSize() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8556 unit: public String getMaxCalls() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8557 unit: public void setMaxCalls() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 153 end line: 155 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8558 unit: public String getVariantSetId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8559 unit: public void setVariantSetId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8560 unit: public List getNames() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8561 unit: public void setNames() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8562 unit: public String getReferenceBases() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8563 unit: public void setReferenceBases() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8564 unit: public List getAlternateBases() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8565 unit: public void setAlternateBases() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8566 unit: public Double getQuality() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8567 unit: public void setQuality() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8568 unit: public List getFilter() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8569 unit: public void setFilter() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8570 unit: public List getCalls() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8571 unit: public void setCalls() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8572 unit: public Integer getOffset() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceBasesGA4GH.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8573 unit: public void setOffset() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceBasesGA4GH.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8574 unit: public String getSequence() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceBasesGA4GH.java start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8575 unit: public void setSequence() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceBasesGA4GH.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8576 unit: public Integer getNextPageToken() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceBasesGA4GH.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8577 unit: public void setNextPageToken() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceBasesGA4GH.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8578 unit: public List getAlleles() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/GenotypeGA4GH.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8579 unit: public Allele getAllele() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/GenotypeGA4GH.java start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8580 unit: public boolean isPhased() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/GenotypeGA4GH.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8581 unit: public int getDP() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/GenotypeGA4GH.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8582 unit: public int getGQ() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/GenotypeGA4GH.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8583 unit: public Map getExtendedAttributes() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/GenotypeGA4GH.java start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8584 unit: public String getId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceGA4GH.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8585 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceGA4GH.java start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8586 unit: public String getLength() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceGA4GH.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8587 unit: public void setLength() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceGA4GH.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8588 unit: public List getSourceAccessions() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceGA4GH.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8589 unit: public void setSourceAccessions() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceGA4GH.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8590 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceGA4GH.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8591 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceGA4GH.java start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8592 unit: public void setReferenceName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceBound.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8593 unit: public String getReferenceName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceBound.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8594 unit: public String getUpperBound() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceBound.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8595 unit: public void setUpperBound() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceBound.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8596 unit: public List getVariants() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsSearch.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8597 unit: public void setVariants() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsSearch.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8598 unit: public String getNextPageToken() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsSearch.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8599 unit: public void setNextPageToken() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsSearch.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8600 unit: public String getCallSetId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantCall.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8601 unit: public void setCallSetId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantCall.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8602 unit: public String getCallSetName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantCall.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8603 unit: public void setCallSetName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantCall.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8604 unit: public List getGenotype() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantCall.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8605 unit: public void setGenotype() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantCall.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8606 unit: public String getPhaseset() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantCall.java start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8607 unit: public void setPhaseset() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantCall.java start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8608 unit: public List getGenotypeLikelihood() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantCall.java start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8609 unit: public void setGenotypeLikelihood() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantCall.java start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8610 unit: public String getDatasetId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8611 unit: public void setDatasetId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8612 unit: public String getId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8613 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8614 unit: public String getReferenceSetId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8615 unit: public void setReferenceSetId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8616 unit: public List getReferenceBounds() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8617 unit: public void setReferenceBounds() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8618 unit: public List getMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8619 unit: public void setMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8620 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8621 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8622 unit: public String getDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8623 unit: public void setDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8624 unit: public String getKey() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSetMetadata.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8625 unit: public void setKey() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSetMetadata.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8626 unit: public String getValue() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSetMetadata.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8627 unit: public void setValue() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSetMetadata.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8628 unit: public String getId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSetMetadata.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8629 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSetMetadata.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8630 unit: public Type getType() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSetMetadata.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8631 unit: public void setType() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSetMetadata.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8632 unit: public String getNumber() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSetMetadata.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8633 unit: public void setNumber() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSetMetadata.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8634 unit: public String getDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSetMetadata.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8635 unit: public void setDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSetMetadata.java start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8636 unit: public void setInfo() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSetMetadata.java start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8637 unit: public String getSampleId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/CallSet.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8638 unit: public void setSampleId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/CallSet.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8639 unit: public List getVariantSetIds() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/CallSet.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8640 unit: public void setVariantSetIds() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/CallSet.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8641 unit: public String getCreated() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/CallSet.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8642 unit: public void setCreated() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/CallSet.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8643 unit: public void setInfo() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/CallSet.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8644 unit: public ItemsByProject() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ItemsByProject.java start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8645 unit: public ItemsByProject() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ItemsByProject.java start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8646 unit: public void setValue() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ItemsByProject.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8647 unit: public List getFileIds() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ItemsByProject.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8648 unit: public String getDataset() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/UrlRequestVO.java start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8649 unit: public void setDataset() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/UrlRequestVO.java start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8650 unit: public List getIds() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/UrlRequestVO.java start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8651 unit: public void setIds() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/UrlRequestVO.java start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8652 unit: public BamQueryOption getOption() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8653 unit: public void setOption() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8654 unit: public final Long getId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8655 unit: public final void setId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8656 unit: public final Long getChromosomeId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8657 unit: public final void setChromosomeId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8658 unit: public final Integer getStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8659 unit: public final void setStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8660 unit: public final Integer getEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8661 unit: public final void setEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8662 unit: public final Double getScaleFactor() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8663 unit: public final void setScaleFactor() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8664 unit: public Boolean getCollapsed() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8665 unit: public void setCollapsed() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8666 unit: public Long getProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8667 unit: public void setProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/TrackQuery.java start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8668 unit: public String getSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/RegionQuery.java start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8669 unit: public void setSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/RegionQuery.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8670 unit: public String getChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/RegionQuery.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8671 unit: public void setChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/RegionQuery.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8672 unit: public String getStart() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/RegionQuery.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8673 unit: public void setStart() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/RegionQuery.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8674 unit: public String getFinish() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/RegionQuery.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8675 unit: public void setFinish() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/RegionQuery.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8676 unit: public String getReadSequence() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ReadSequenceVO.java start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8677 unit: public void setReadSequence() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ReadSequenceVO.java start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8678 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ReadQuery.java start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8679 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ReadQuery.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8680 unit: public Integer getEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ReadQuery.java start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8681 unit: public void setEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ReadQuery.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8682 unit: public Integer getStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ReadQuery.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8683 unit: public void setStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ReadQuery.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8684 unit: public Long getChromosomeId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ReadQuery.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8685 unit: public void setChromosomeId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ReadQuery.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8686 unit: public Long getId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ReadQuery.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8687 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ReadQuery.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8688 unit: public Long getProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ReadQuery.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8689 unit: public void setProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ReadQuery.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8690 unit: public Long getSnpId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8691 unit: public void setSnpId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8692 unit: public String getOrganism() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8693 unit: public void setOrganism() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8694 unit: public String getAccession() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8695 unit: public void setAccession() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8696 unit: public String getChromosomePosition() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8697 unit: public void setChromosomePosition() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8698 unit: public String getContigPosition() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8699 unit: public void setContigPosition() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8700 unit: public String getFasta() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8701 unit: public void setFasta() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8702 unit: public String getGlobalMaf() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8703 unit: public void setGlobalMaf() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8704 unit: public String getClinicalSignificance() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 144 end line: 146 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8705 unit: public void setClinicalSignificance() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8706 unit: public String getChr() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 152 end line: 154 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8707 unit: public void setChr() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 156 end line: 158 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8708 unit: public String getSnpClass() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8709 unit: public void setSnpClass() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 164 end line: 166 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8710 unit: public String getHgvsNames() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 168 end line: 170 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8711 unit: public void setHgvsNames() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 172 end line: 174 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8712 unit: public String getTaxId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 176 end line: 178 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8713 unit: public void setTaxId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 180 end line: 182 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8714 unit: public String getHandle() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 184 end line: 186 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8715 unit: public void setHandle() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 188 end line: 190 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8716 unit: public String getGenomeLabel() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 192 end line: 194 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8717 unit: public void setGenomeLabel() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 196 end line: 198 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8718 unit: public String getContigLabel() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 200 end line: 202 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8719 unit: public void setContigLabel() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 204 end line: 206 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8720 unit: public String getAssemblyNumber() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 208 end line: 210 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8721 unit: public void setAssemblyNumber() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 212 end line: 214 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8722 unit: public List getGenes() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 216 end line: 218 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8723 unit: public void setGenes() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 220 end line: 222 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8724 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 231 end line: 233 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8725 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 235 end line: 237 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8726 unit: public String getGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 239 end line: 241 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8727 unit: public void setGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIShortVarVO.java start line: 243 end line: 245 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8728 unit: public String getAccession() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8729 unit: public void setAccession() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8730 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8731 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8732 unit: public List getProteinNames() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8733 unit: public void setProteinNames() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8734 unit: public List getGeneNames() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8735 unit: public void setGeneNames() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8736 unit: public String getOrganismName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8737 unit: public void setOrganismName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8738 unit: public List getLineage() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8739 unit: public void setLineage() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8740 unit: public String getStatus() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8741 unit: public void setStatus() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8742 unit: public String getUrl() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8743 unit: public void setUrl() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8744 unit: public String getFunction() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8745 unit: public void setFunction() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/UniprotEntryVO.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8746 unit: public boolean isPathogenic() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8747 unit: public String getOrganism() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8748 unit: public String getAssemblyNumber() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8749 unit: public String getAssemblyName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8750 unit: public String getRefSeqGene() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 146 end line: 148 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8751 unit: public void setRefSeqGene() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 150 end line: 152 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8752 unit: public String getGene() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8753 unit: public void setGene() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8754 unit: public String getPosition() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 162 end line: 164 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8755 unit: public void setPosition() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 166 end line: 168 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8756 unit: public String getAllele() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8757 unit: public void setAllele() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIVariationVO.java start line: 174 end line: 176 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8758 unit: public String getOrganismCommon() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8759 unit: public void setOrganismCommon() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8760 unit: public String getOrganismScientific() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8761 unit: public void setOrganismScientific() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8762 unit: public String getPrimarySource() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8763 unit: public void setPrimarySource() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8764 unit: public String getGeneType() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8765 unit: public void setGeneType() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8766 unit: public String getRefSeqStatus() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8767 unit: public void setRefSeqStatus() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8768 unit: public String getGeneSummary() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8769 unit: public void setGeneSummary() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8770 unit: public List getInteractions() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 143 end line: 145 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8771 unit: public void setInteractions() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8772 unit: public void setPubmedReferences() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 159 end line: 161 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8773 unit: public void setBiosystemsReferences() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8774 unit: public String getOfficialSymbol() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 174 end line: 176 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8775 unit: public void setOfficialSymbol() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 178 end line: 180 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8776 unit: public String getOfficialFullName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8777 unit: public void setOfficialFullName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 186 end line: 188 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8778 unit: public String getLocusTag() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 190 end line: 192 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8779 unit: public void setLocusTag() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 194 end line: 196 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8780 unit: public List getAlsoKnownAs() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 198 end line: 200 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8781 unit: public void setAlsoKnownAs() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 202 end line: 204 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8782 unit: public String getPrimarySourcePrefix() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 206 end line: 208 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8783 unit: public void setPrimarySourcePrefix() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 210 end line: 212 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8784 unit: public String getRnaName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 214 end line: 216 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8785 unit: public void setRnaName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 218 end line: 220 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8786 unit: public String getLineage() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 222 end line: 224 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8787 unit: public void setLineage() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 226 end line: 228 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8788 unit: public int getPubNumber() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 230 end line: 232 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8789 unit: public void setPubNumber() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 234 end line: 236 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8790 unit: public int getPathwaysNumber() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 238 end line: 240 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8791 unit: public void setPathwaysNumber() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 242 end line: 244 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8792 unit: public String getGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 246 end line: 248 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8793 unit: public void setGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 250 end line: 252 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8794 unit: public String getLinkToCitations() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 254 end line: 256 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8795 unit: public void setLinkToCitations() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 258 end line: 260 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8796 unit: public String getLinkToHomologsCitations() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 262 end line: 264 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8797 unit: public void setLinkToHomologsCitations() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 266 end line: 268 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8798 unit: public String getGeneLink() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 270 end line: 272 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8799 unit: public void setGeneLink() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 274 end line: 276 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8800 unit: public String getProductRef() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 316 end line: 318 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8801 unit: public void setProductRef() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 320 end line: 322 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8802 unit: public String getProductName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 324 end line: 326 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8803 unit: public void setProductName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 328 end line: 330 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8804 unit: public String getProductId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 332 end line: 334 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8805 unit: public void setProductId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 336 end line: 338 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8806 unit: public String getInteractantRef() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 340 end line: 342 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8807 unit: public void setInteractantRef() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 344 end line: 346 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8808 unit: public String getInteractantName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 348 end line: 350 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8809 unit: public void setInteractantName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 352 end line: 354 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8810 unit: public String getInteractantId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 356 end line: 358 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8811 unit: public void setInteractantId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 360 end line: 362 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8812 unit: public String getOtherGeneRef() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 364 end line: 366 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8813 unit: public void setOtherGeneRef() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 368 end line: 370 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8814 unit: public String getOtherGeneName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 372 end line: 374 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8815 unit: public void setOtherGeneName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 376 end line: 378 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8816 unit: public String getOtherGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 380 end line: 382 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8817 unit: public void setOtherGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 384 end line: 386 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8818 unit: public String getComplexLabel() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 388 end line: 390 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8819 unit: public void setComplexLabel() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 392 end line: 394 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8820 unit: public String getSourceName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 396 end line: 398 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8821 unit: public void setSourceName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 400 end line: 402 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8822 unit: public String getSourceId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 404 end line: 406 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8823 unit: public void setSourceId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 408 end line: 410 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8824 unit: public List getPubmedIdList() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 412 end line: 414 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8825 unit: public void setPubmedIdList() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 416 end line: 418 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8826 unit: public String getDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 420 end line: 422 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8827 unit: public void setDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIGeneVO.java start line: 424 end line: 426 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8828 unit: public String getUid() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8829 unit: public void setUid() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8830 unit: public String getTitle() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8831 unit: public void setTitle() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8832 unit: public String getSource() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8833 unit: public void setSource() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8834 unit: public List getAuthors() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8835 unit: public void setAuthors() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8836 unit: public NCBIBiosystem getBiosystem() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8837 unit: public void setBiosystem() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8838 unit: public NCBIAuthor getAuthor() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8839 unit: public void setAuthor() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8840 unit: public Boolean getMultipleAuthors() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8841 unit: public void setMultipleAuthors() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8842 unit: public String getLink() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 141 end line: 143 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8843 unit: public void setLink() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8844 unit: public String getDate() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8845 unit: public void setDate() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 153 end line: 155 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8846 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 162 end line: 164 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8847 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 166 end line: 168 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8848 unit: public String getAuthtype() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8849 unit: public void setAuthtype() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 174 end line: 176 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8850 unit: public String getBiosystemname() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 191 end line: 193 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8851 unit: public void setBiosystemname() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 195 end line: 197 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8852 unit: public String getBiosystemtype() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 199 end line: 201 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8853 unit: public void setBiosystemtype() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 203 end line: 205 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8854 unit: public String getDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 207 end line: 209 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8855 unit: public void setDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBISummaryVO.java start line: 211 end line: 213 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8856 unit: public String getClinvarLink() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8857 unit: public void setClinvarLink() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8858 unit: public NCBIClinicalSignificance getClinicalSignificance() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8859 unit: public void setClinicalSignificance() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8860 unit: public List getVariationSet() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8861 unit: public void setVariationSet() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8862 unit: public List getTraitSet() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8863 unit: public void setTraitSet() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8864 unit: public boolean isPathogenic() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8865 unit: public String getDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8866 unit: public void setDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8867 unit: public String getReviewStatus() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8868 unit: public void setReviewStatus() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8869 unit: public String getLastEvaluated() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8870 unit: public void setLastEvaluated() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8871 unit: public List getVariationXrefs() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 138 end line: 140 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8872 unit: public void setVariationXrefs() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8873 unit: public List getTraitXrefList() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 156 end line: 158 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8874 unit: public void setTraitXrefList() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8875 unit: public String getTraitName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 164 end line: 166 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8876 unit: public void setTraitName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 168 end line: 170 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8877 unit: public String getDbSource() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 183 end line: 185 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8878 unit: public void setDbSource() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 187 end line: 189 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8879 unit: public String getDbId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 191 end line: 193 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8880 unit: public void setDbId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIClinVarVO.java start line: 195 end line: 197 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8881 unit: public String getOrganism() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIStructVarVO.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8882 unit: public void setOrganism() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/externaldb/NCBIStructVarVO.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8883 unit: public Integer getStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ExonRangeQuery.java start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8884 unit: public void setStartIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ExonRangeQuery.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8885 unit: public Integer getEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ExonRangeQuery.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8886 unit: public void setEndIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ExonRangeQuery.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8887 unit: public Long getId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/AbstractExonQuery.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8888 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/AbstractExonQuery.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8889 unit: public Long getChromosomeId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/AbstractExonQuery.java start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8890 unit: public void setChromosomeId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/AbstractExonQuery.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8891 unit: public Integer getIntronLength() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/AbstractExonQuery.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8892 unit: public void setIntronLength() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/AbstractExonQuery.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8893 unit: public Long getProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/AbstractExonQuery.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8894 unit: public void setProjectId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/AbstractExonQuery.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8895 unit: public String getOriginalFilePath() file: server/catgenome/src/main/java/com/epam/catgenome/controller/tools/FeatureFileSortRequest.java start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8896 unit: public void setOriginalFilePath() file: server/catgenome/src/main/java/com/epam/catgenome/controller/tools/FeatureFileSortRequest.java start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8897 unit: public String getSortedFilePath() file: server/catgenome/src/main/java/com/epam/catgenome/controller/tools/FeatureFileSortRequest.java start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8898 unit: public void setSortedFilePath() file: server/catgenome/src/main/java/com/epam/catgenome/controller/tools/FeatureFileSortRequest.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8899 unit: public int getMaxMemory() file: server/catgenome/src/main/java/com/epam/catgenome/controller/tools/FeatureFileSortRequest.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8900 unit: public void setMaxMemory() file: server/catgenome/src/main/java/com/epam/catgenome/controller/tools/FeatureFileSortRequest.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8901 unit: public Result sortFeatureFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/tools/ToolsController.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8902 unit: public Result registerBedFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/bed/BedController.java start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8903 unit: public Result getPatents() file: server/catgenome/src/main/java/com/epam/catgenome/controller/patents/PatentsController.java start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8904 unit: public Result grantPermissions() file: server/catgenome/src/main/java/com/epam/catgenome/controller/security/PermissionController.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8905 unit: public void syncAclEntities() file: server/catgenome/src/main/java/com/epam/catgenome/controller/security/PermissionController.java start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8906 unit: public Result updateRole() file: server/catgenome/src/main/java/com/epam/catgenome/controller/person/RoleController.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8907 unit: public Result getRole() file: server/catgenome/src/main/java/com/epam/catgenome/controller/person/RoleController.java start line: 144 end line: 146 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8908 unit: public Result deleteRole() file: server/catgenome/src/main/java/com/epam/catgenome/controller/person/RoleController.java start line: 157 end line: 159 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8909 unit: public Result loadRoleByName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/person/RoleController.java start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8910 unit: public Result currentUser() file: server/catgenome/src/main/java/com/epam/catgenome/controller/person/UserController.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8911 unit: public Result getToken() file: server/catgenome/src/main/java/com/epam/catgenome/controller/person/UserController.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8912 unit: public Result createUser() file: server/catgenome/src/main/java/com/epam/catgenome/controller/person/UserController.java start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8913 unit: public Result loadUser() file: server/catgenome/src/main/java/com/epam/catgenome/controller/person/UserController.java start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8914 unit: public Result updateUser() file: server/catgenome/src/main/java/com/epam/catgenome/controller/person/UserController.java start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8915 unit: public Result loadUserByName() file: server/catgenome/src/main/java/com/epam/catgenome/controller/person/UserController.java start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8916 unit: public Result registerWigFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/wig/WigController.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8917 unit: public Result createCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/controller/bam/BamCoverageController.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8918 unit: public Result registerBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/bam/BamController.java start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8919 unit: public Track loadConsensusSequence() file: server/catgenome/src/main/java/com/epam/catgenome/controller/bam/BamController.java start line: 188 end line: 190 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8920 unit: public void setVariations() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/ProteinSequenceVariationQuery.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8921 unit: public void setTrackQuery() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/ProteinSequenceVariationQuery.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8922 unit: public Track getVariations() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/ProteinSequenceVariationQuery.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8923 unit: public TrackQuery getTrackQuery() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/ProteinSequenceVariationQuery.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8924 unit: public Result loadProject() file: server/catgenome/src/main/java/com/epam/catgenome/controller/project/ProjectController.java start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8925 unit: public Result erg() file: server/catgenome/src/main/java/com/epam/catgenome/controller/project/ProjectController.java start line: 486 end line: 488 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8926 unit: public Result deleteProjectDescription() file: server/catgenome/src/main/java/com/epam/catgenome/controller/project/ProjectController.java start line: 564 end line: 566 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8927 unit: public Result registerVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vcf/VcfController.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8928 unit: public Result loadVersion() file: server/catgenome/src/main/java/com/epam/catgenome/controller/UtilsController.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8929 unit: public Result isRoleModelEnabled() file: server/catgenome/src/main/java/com/epam/catgenome/controller/UtilsController.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8930 unit: public Result sessionExpirationBehaviour() file: server/catgenome/src/main/java/com/epam/catgenome/controller/UtilsController.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8931 unit: public Result getPathToExistingIndex() file: server/catgenome/src/main/java/com/epam/catgenome/controller/UtilsController.java start line: 249 end line: 251 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8932 unit: public Result loadTaxonomy() file: server/catgenome/src/main/java/com/epam/catgenome/controller/externaldb/TaxonomyController.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8933 unit: public Result loadTask() file: server/catgenome/src/main/java/com/epam/catgenome/controller/blast/BlastController.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8934 unit: public Result getResult() file: server/catgenome/src/main/java/com/epam/catgenome/controller/blast/BlastController.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8935 unit: public Result getTasksCount() file: server/catgenome/src/main/java/com/epam/catgenome/controller/blast/BlastController.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8936 unit: public Result loadTasks() file: server/catgenome/src/main/java/com/epam/catgenome/controller/blast/BlastController.java start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8937 unit: public Result loadDataBase() file: server/catgenome/src/main/java/com/epam/catgenome/controller/blast/BlastDatabaseController.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8938 unit: public Result registerSegFile() file: server/catgenome/src/main/java/com/epam/catgenome/controller/seg/SegController.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8939 unit: public Result createHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/controller/heatmap/HeatmapController.java start line: 180 end line: 182 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8940 unit: private Result() file: server/catgenome/src/main/java/com/epam/catgenome/controller/Result.java start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8941 unit: public T getPayload() file: server/catgenome/src/main/java/com/epam/catgenome/controller/Result.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8942 unit: public String getMessage() file: server/catgenome/src/main/java/com/epam/catgenome/controller/Result.java start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8943 unit: public ResultStatus getStatus() file: server/catgenome/src/main/java/com/epam/catgenome/controller/Result.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8944 unit: public static Result success() file: server/catgenome/src/main/java/com/epam/catgenome/controller/Result.java start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8945 unit: public static Result success() file: server/catgenome/src/main/java/com/epam/catgenome/controller/Result.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8946 unit: public static Result error() file: server/catgenome/src/main/java/com/epam/catgenome/controller/Result.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8947 unit: public static Result info() file: server/catgenome/src/main/java/com/epam/catgenome/controller/Result.java start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8948 unit: public static Result warn() file: server/catgenome/src/main/java/com/epam/catgenome/controller/Result.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8949 unit: public static Result error() file: server/catgenome/src/main/java/com/epam/catgenome/controller/Result.java start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8950 unit: public static Result result() file: server/catgenome/src/main/java/com/epam/catgenome/controller/Result.java start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 8951 unit: public static JsonMapper getInstance() file: server/catgenome/src/main/java/com/epam/catgenome/controller/JsonMapper.java start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8952 unit: public Result upsertMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/controller/metadata/MetadataController.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8953 unit: public Result getMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/controller/metadata/MetadataController.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 8954 unit: public Result load() file: server/catgenome/src/main/java/com/epam/catgenome/controller/pdb/PdbFileController.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8955 unit: public Result create() file: server/catgenome/src/main/java/com/epam/catgenome/controller/pdb/PdbFileController.java start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8956 unit: public Result loadBookmark() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/BookmarkController.java start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8957 unit: public final Result loadReference() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8958 unit: public final Result loadReferenceBuBioId() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8959 unit: public final Result loadChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 167 end line: 169 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8960 unit: public Result registerSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 342 end line: 344 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8961 unit: public Result updatedSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 355 end line: 357 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8962 unit: public Result loadMotifTable() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 420 end line: 422 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8963 unit: public Result loadNextMotif() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 435 end line: 437 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8964 unit: public Result loadPrevMotif() file: server/catgenome/src/main/java/com/epam/catgenome/controller/reference/ReferenceController.java start line: 450 end line: 452 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8965 unit: public Result loadSession() file: server/catgenome/src/main/java/com/epam/catgenome/controller/session/SessionController.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8966 unit: public Result deleteSession() file: server/catgenome/src/main/java/com/epam/catgenome/controller/session/SessionController.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8967 unit: public Result createSession() file: server/catgenome/src/main/java/com/epam/catgenome/controller/session/SessionController.java start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8968 unit: public Result update() file: server/catgenome/src/main/java/com/epam/catgenome/controller/session/SessionController.java start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8969 unit: public AuthManager() file: server/catgenome/src/main/java/com/epam/catgenome/manager/AuthManager.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8970 unit: public void updateBiologicalDataItems() file: server/catgenome/src/main/java/com/epam/catgenome/manager/BiologicalDataItemManager.java start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8971 unit: public void deleteBiologicalDataItem() file: server/catgenome/src/main/java/com/epam/catgenome/manager/BiologicalDataItemManager.java start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8972 unit: public List loadAllItems() file: server/catgenome/src/main/java/com/epam/catgenome/manager/BiologicalDataItemManager.java start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8973 unit: public List loadAllItems() file: server/catgenome/src/main/java/com/epam/catgenome/manager/BiologicalDataItemManager.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8974 unit: public Integer countItems() file: server/catgenome/src/main/java/com/epam/catgenome/manager/BiologicalDataItemManager.java start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8975 unit: public String getB() file: server/catgenome/src/main/java/com/epam/catgenome/manager/BiologicalDataItemManager.java start line: 270 end line: 272 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8976 unit: public void setB() file: server/catgenome/src/main/java/com/epam/catgenome/manager/BiologicalDataItemManager.java start line: 274 end line: 276 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8977 unit: public String getP() file: server/catgenome/src/main/java/com/epam/catgenome/manager/BiologicalDataItemManager.java start line: 278 end line: 280 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8978 unit: public void setP() file: server/catgenome/src/main/java/com/epam/catgenome/manager/BiologicalDataItemManager.java start line: 282 end line: 284 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8979 unit: public AclClass getSupportedClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafFileManager.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8980 unit: public MafFile loadMafFileNullable() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafFileManager.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8981 unit: public Long createMafFileId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/MafFileManager.java start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8982 unit: public static SequenceSource forValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/SequenceSource.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8983 unit: public String getFileValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/SequenceSource.java start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8984 unit: public Object readActualHeader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/MafCodec.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8985 unit: public boolean canDecode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/MafCodec.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8986 unit: private void parseFileName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/MafCodec.java start line: 180 end line: 182 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8987 unit: public static MutationStatus forValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/MutationStatus.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 8988 unit: public String getFileValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/MutationStatus.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8989 unit: public String getChr() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8990 unit: public String getContig() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8991 unit: public int getStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8992 unit: public int getEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8993 unit: public String getSampleName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8994 unit: public String getHugoSymbol() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8995 unit: public Integer getEntrezGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8996 unit: public String getCenter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8997 unit: public String getNcbiBuild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8998 unit: public StrandSerializable getStrand() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 8999 unit: public VariantClassification getVariantClassification() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 132 end line: 134 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9000 unit: public VariationType getVariationType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9001 unit: public String getRef() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9002 unit: public String getTumorSeqAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9003 unit: public String getTumorSeqAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 152 end line: 154 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9004 unit: public String getDbSnpRS() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 157 end line: 159 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9005 unit: public String getDbSnpValStatus() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 162 end line: 164 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9006 unit: public String getTumorSampleBarcode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 167 end line: 169 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9007 unit: public String getMatchedNormSampleBarcode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 172 end line: 174 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9008 unit: public String getMatchNormSeqAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 177 end line: 179 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9009 unit: public String getMatchNormSeqAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9010 unit: public String getTumorValidationAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 187 end line: 189 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9011 unit: public String getTumorValidationAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 192 end line: 194 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9012 unit: public String getMatchNormValidationAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 197 end line: 199 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9013 unit: public String getMatchNormValidationAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 202 end line: 204 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9014 unit: public VerificationStatus getVerificationStatus() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 207 end line: 209 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9015 unit: public ValidationStatus getValidationStatus() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 212 end line: 214 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9016 unit: public MutationStatus getMutationStatus() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 217 end line: 219 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9017 unit: public String getSequencingPhase() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 222 end line: 224 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9018 unit: public SequenceSource getSequenceSource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 227 end line: 229 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9019 unit: public String getValidationMethod() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 232 end line: 234 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9020 unit: public Integer getScore() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 237 end line: 239 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9021 unit: public String getBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 242 end line: 244 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9022 unit: public String getSequencer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 247 end line: 249 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9023 unit: public String getTumorSampleUUID() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 252 end line: 254 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9024 unit: public String getMatchedNormSampleUUID() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 257 end line: 259 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9025 unit: public void setHugoSymbol() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 261 end line: 263 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9026 unit: public void setEntrezGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 265 end line: 267 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9027 unit: public void setCenter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 269 end line: 271 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9028 unit: public void setStrand() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 273 end line: 275 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9029 unit: public void setVariantClassification() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 277 end line: 279 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9030 unit: public void setVariationType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 281 end line: 283 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9031 unit: public void setRef() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 285 end line: 287 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9032 unit: public void setTumorSeqAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 289 end line: 291 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9033 unit: public void setTumorSeqAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 293 end line: 295 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9034 unit: public void setDbSnpRS() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 297 end line: 299 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9035 unit: public void setDbSnpValStatus() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 301 end line: 303 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9036 unit: public void setTumorSampleBarcode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 305 end line: 307 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9037 unit: public void setNcbiBuild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 309 end line: 311 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9038 unit: public void setMatchedNormSampleBarcode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 313 end line: 315 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9039 unit: public void setMatchNormSeqAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 317 end line: 319 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9040 unit: public void setMatchNormSeqAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 321 end line: 323 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9041 unit: public void setTumorValidationAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 325 end line: 327 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9042 unit: public void setTumorValidationAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 329 end line: 331 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9043 unit: public void setMatchNormValidationAllele1() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 333 end line: 335 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9044 unit: public void setMatchNormValidationAllele2() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 337 end line: 339 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9045 unit: public void setVerificationStatus() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 341 end line: 343 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9046 unit: public void setValidationStatus() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 345 end line: 347 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9047 unit: public void setMutationStatus() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 349 end line: 351 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9048 unit: public void setSequencingPhase() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 353 end line: 355 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9049 unit: public void setSequenceSource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 357 end line: 359 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9050 unit: public void setValidationMethod() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 361 end line: 363 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9051 unit: public void setSequencer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 365 end line: 367 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9052 unit: public void setTumorSampleUUID() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 369 end line: 371 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9053 unit: public void setMatchedNormSampleUUID() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 373 end line: 375 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9054 unit: public void setSampleName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/NggbMafFeature.java start line: 377 end line: 379 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9055 unit: public static VariantClassification forValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/VariantClassification.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9056 unit: public String getFileValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/VariantClassification.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9057 unit: public static ValidationStatus forValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/ValidationStatus.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9058 unit: public String getFileValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/ValidationStatus.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9059 unit: public static VerificationStatus forValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/VerificationStatus.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9060 unit: public String getFileValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/maf/parser/VerificationStatus.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9061 unit: public static int splitFileReadingInterval() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/ParallelTaskExecutionUtils.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 9062 unit: public Iterator iterator() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9063 unit: public int size() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9064 unit: public boolean isEmpty() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9065 unit: public boolean contains() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9066 unit: public boolean remove() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9067 unit: public boolean containsAll() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9068 unit: public boolean addAll() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9069 unit: public boolean removeAll() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9070 unit: public boolean retainAll() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 132 end line: 134 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9071 unit: public void clear() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9072 unit: public boolean hasNext() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TreeListMultiset.java start line: 158 end line: 160 size: 3 LOC McCabe index: 3 number of parameters: 0 id: 9073 unit: public ExecutorService getSearchExecutor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TaskExecutorService.java start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9074 unit: public synchronized void setForceSequential() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/TaskExecutorService.java start line: 151 end line: 153 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9075 unit: public String sortFeatureFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/tools/ToolSecurityService.java start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9076 unit: private String getSubject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/UpdateItemPathManager.java start line: 226 end line: 228 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9077 unit: public BedFile load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedFileManager.java start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9078 unit: public Long createBedFileId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedFileManager.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9079 unit: public AclClass getSupportedClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedFileManager.java start line: 151 end line: 153 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9080 unit: public Map getAdditional() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9081 unit: public Strand getStrand() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9082 unit: public String getType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9083 unit: public Color getColor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9084 unit: public String getDescription() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9085 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9086 unit: public Float getScore() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9087 unit: public String getLink() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9088 unit: public Integer getThickStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9089 unit: public Integer getThickEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9090 unit: public String getChr() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9091 unit: public String getContig() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9092 unit: public int getStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9093 unit: public int getEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9094 unit: public void setStrand() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9095 unit: public void setColor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9096 unit: public void setScore() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 138 end line: 140 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9097 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9098 unit: public void setThickStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 146 end line: 148 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9099 unit: public void setThickEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 150 end line: 152 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9100 unit: public Integer getBlockCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 155 end line: 157 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9101 unit: public void setBlockCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 159 end line: 161 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9102 unit: public void setBlockSizes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 168 end line: 170 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9103 unit: public void setBlockStarts() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 177 end line: 179 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9104 unit: public String getId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9105 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 186 end line: 188 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9106 unit: public void setDescription() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbSimpleBedFeature.java start line: 190 end line: 192 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9107 unit: public NggbMultiFormatBedCodec() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedCodec.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9108 unit: public Object readActualHeader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedCodec.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9109 unit: public boolean canDecode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedCodec.java start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9110 unit: public int getStartOffset() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedCodec.java start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9111 unit: private boolean readHeaderLine() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedCodec.java start line: 137 end line: 140 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9112 unit: public int value() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedCodec.java start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9113 unit: public Map getAdditional() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9114 unit: public Strand getStrand() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9115 unit: public String getType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9116 unit: public Color getColor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9117 unit: public String getDescription() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9118 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9119 unit: public Float getScore() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9120 unit: public String getLink() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9121 unit: public Integer getThickStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9122 unit: public Integer getThickEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9123 unit: public String getChr() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9124 unit: public String getContig() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9125 unit: public int getStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9126 unit: public int getEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9127 unit: public Integer getBlockCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9128 unit: public String getId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 161 end line: 163 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9129 unit: public NggbBedCodec() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9130 unit: public Object readActualHeader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9131 unit: public boolean canDecode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9132 unit: public int getStartOffset() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9133 unit: private boolean readHeaderLine() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 261 end line: 264 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9134 unit: public int value() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbBedCodec.java start line: 282 end line: 284 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9135 unit: public BedFile registerBed() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedSecurityService.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9136 unit: public BedFile unregisterBedFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedSecurityService.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9137 unit: public Track loadFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedSecurityService.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9138 unit: public BedFile reindexBedFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedSecurityService.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9139 unit: public Track loadHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/BedSecurityService.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9140 unit: public String getSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/OpenAIChatGPT35.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9141 unit: public LLMProvider getProvider() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/OpenAIChatGPT35.java start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9142 unit: public String getSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/CustomOpenAILLMClient.java start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9143 unit: public String getChatResponse() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/CustomOpenAILLMClient.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9144 unit: public LLMProvider getProvider() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/GCPPaLM2.java start line: 159 end line: 161 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9145 unit: public String getSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/OpenAIChatGPT40.java start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9146 unit: public LLMProvider getProvider() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/OpenAIChatGPT40.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9147 unit: public String getSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/CustomLLMHandler.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9148 unit: public LLMProvider getProvider() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/CustomLLMHandler.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9149 unit: default String buildPrompt() file: server/catgenome/src/main/java/com/epam/catgenome/manager/llm/LLMHandler.java start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 9150 unit: public Person loadPersonById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/person/PersonManager.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9151 unit: public IndexSearchResult filterVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexSecurityService.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9152 unit: public List groupVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexSecurityService.java start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9153 unit: public List groupVariations() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexSecurityService.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 9154 unit: public VcfFilterInfo loadVcfFilterInfoForProject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexSecurityService.java start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9155 unit: public List getByItemIdAndUid() file: server/catgenome/src/main/java/com/epam/catgenome/manager/activity/ActivityService.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9156 unit: public void deleteByFileId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/activity/ActivityService.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9157 unit: public BedGraphCodec() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphCodec.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9158 unit: public boolean canDecode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphCodec.java start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9159 unit: public String getChr() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphFeature.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9160 unit: public String getContig() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphFeature.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9161 unit: public int getStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphFeature.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9162 unit: public int getEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphFeature.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9163 unit: public float getValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphFeature.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9164 unit: public Iterator query() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphReader.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 9165 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/reader/BedGraphReader.java start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9166 unit: public WigFile registerWigFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigSecurityService.java start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9167 unit: public Track getWigTrack() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigSecurityService.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9168 unit: public WigFile unregisterWigFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigSecurityService.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9169 unit: public BedGraphProcessor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/BedGraphProcessor.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9170 unit: private String getDownsampledBedGraphIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/BedGraphProcessor.java start line: 188 end line: 190 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9171 unit: public Long create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigFileManager.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9172 unit: public WigFile load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigFileManager.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9173 unit: public AclClass getSupportedClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigFileManager.java start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9174 unit: public WigProcessor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigProcessor.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9175 unit: protected void assertFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/wig/WigProcessor.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9176 unit: public DownsamplingSifter getSifter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/filters/RightSAMRecordFilter.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9177 unit: public MiddleSAMRecordFilter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/filters/MiddleSAMRecordFilter.java start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9178 unit: public DownsamplingSifter getSifter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/filters/MiddleSAMRecordFilter.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9179 unit: public DownsamplingSifter getSifter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/filters/LeftSAMRecordFilter.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9180 unit: public List loadAll() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageManager.java start line: 150 end line: 152 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9181 unit: public List loadByBamId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageManager.java start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9182 unit: private Sort getDefaultSort() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageManager.java start line: 226 end line: 228 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9183 unit: public void deleteCoverageDocument() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageManager.java start line: 335 end line: 337 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9184 unit: private static IndexField getByName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageManager.java start line: 377 end line: 379 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9185 unit: public List getDownsampleCoverageResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/ConstantMemorySAMRecordSampler.java start line: 141 end line: 143 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9186 unit: public int getFilteredReadsCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/ConstantMemorySAMRecordSampler.java start line: 152 end line: 155 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9187 unit: public List getDownsampleCoverageResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/FullResultSifter.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9188 unit: public int getFilteredReadsCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/FullResultSifter.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9189 unit: public void finish() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/StandardSAMRecordSifter.java start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9190 unit: public int getTotalReadsCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/StandardSAMRecordSifter.java start line: 196 end line: 198 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9191 unit: public BamFile load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamFileManager.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9192 unit: public AclClass getSupportedClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamFileManager.java start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9193 unit: private SamInputResource getS3SamInputResource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 608 end line: 610 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9194 unit: private SamInputResource getAZSamInputResource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 612 end line: 614 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9195 unit: public String getPath() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamHelper.java start line: 653 end line: 655 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9196 unit: public BamFile registerBam() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamSecurityService.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9197 unit: public Read loadRead() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamSecurityService.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 9198 unit: public BamFile unregisterBamFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamSecurityService.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9199 unit: public Track calculateConsensusSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamSecurityService.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9200 unit: private void writeHeader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamTrackEmitter.java start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9201 unit: public Integer getMinPosition() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 238 end line: 240 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9202 unit: public String getReferenceBuff() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 258 end line: 260 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 9203 unit: public DownsamplingSifter getSifter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 263 end line: 265 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9204 unit: public Filter getFilter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 268 end line: 270 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9205 unit: private boolean checkIfBiasOutOfBound() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/handlers/SAMRecordHandler.java start line: 456 end line: 458 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 9206 unit: public BamCoverage createCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageSecurityService.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9207 unit: public List loadAll() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageSecurityService.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9208 unit: public List loadByBamId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageSecurityService.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9209 unit: public Page loadCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageSecurityService.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9210 unit: public void deleteCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/BamCoverageSecurityService.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9211 unit: public List findFilesByName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemSecurityService.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9212 unit: public BiologicalDataItem deleteFileByBioItemId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemSecurityService.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9213 unit: public void renameFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemSecurityService.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 9214 unit: public BiologicalDataItem findFileByBioItemId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemSecurityService.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9215 unit: public Map getFormats() file: server/catgenome/src/main/java/com/epam/catgenome/manager/dataitem/DataItemSecurityService.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9216 unit: public Optional getOriginalUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/UrlShorterManager.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9217 unit: public NgbUser loadUserByName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9218 unit: public List loadAllUsers() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9219 unit: public List loadUsersByNames() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9220 unit: public NgbUser createUser() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserManager.java start line: 179 end line: 181 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9221 unit: public List loadAllUsers() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserSecurityService.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9222 unit: public NgbUser loadUserByName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserSecurityService.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9223 unit: public NgbUser createUser() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserSecurityService.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9224 unit: public NgbUser updateUser() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserSecurityService.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9225 unit: public NgbUser loadUser() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserSecurityService.java start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9226 unit: public void deleteUser() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserSecurityService.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9227 unit: public NgbUser updateUserRoles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserSecurityService.java start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9228 unit: public List loadUsers() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserSecurityService.java start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9229 unit: public JwtRawToken issueTokenForCurrentUser() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserSecurityService.java start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9230 unit: public UserContext getUserContext() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserSecurityService.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9231 unit: public Collection loadUsersByNames() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserSecurityService.java start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9232 unit: public Collection findGroups() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/UserSecurityService.java start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9233 unit: public Collection loadRolesWithUsers() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleSecurityService.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9234 unit: public Collection loadRoles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleSecurityService.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9235 unit: public Role loadRole() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleSecurityService.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9236 unit: public Role createRole() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleSecurityService.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9237 unit: public Role updateRole() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleSecurityService.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9238 unit: public Role deleteRole() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleSecurityService.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9239 unit: public ExtendedRole assignRole() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleSecurityService.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9240 unit: public Role loadRoleByName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleSecurityService.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9241 unit: public ExtendedRole removeRole() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleSecurityService.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9242 unit: public List loadDefaultRoles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9243 unit: public List loadRoles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9244 unit: public Optional findRoleByName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 167 end line: 169 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9245 unit: public List loadAllRoles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 175 end line: 177 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9246 unit: public Role loadRoleWithUsers() file: server/catgenome/src/main/java/com/epam/catgenome/manager/user/RoleManager.java start line: 179 end line: 181 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9247 unit: public SecuredEntityManager getEntityManager() file: server/catgenome/src/main/java/com/epam/catgenome/manager/CompositeSecuredEntityManager.java start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9248 unit: public AbstractSecuredEntity load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/CompositeSecuredEntityManager.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9249 unit: public AbstractSecuredEntity changeOwner() file: server/catgenome/src/main/java/com/epam/catgenome/manager/CompositeSecuredEntityManager.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 9250 unit: public GffReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GffReader.java start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 9251 unit: protected GeneFeature convertGeneIndexEntry() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GffReader.java start line: 192 end line: 194 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9252 unit: public GtfReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GtfReader.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 9253 unit: protected GeneFeature convertGeneIndexEntry() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/GtfReader.java start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9254 unit: protected boolean passesScaleFactor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/reader/AbstractGeneReader.java start line: 513 end line: 515 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9255 unit: public List loadFiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneFileManager.java start line: 153 end line: 155 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9256 unit: public AclClass getSupportedClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneFileManager.java start line: 167 end line: 169 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9257 unit: public Long createGeneFileId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneFileManager.java start line: 183 end line: 185 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9258 unit: public static boolean isGene() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9259 unit: public static boolean isGene() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9260 unit: public static boolean isChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9261 unit: public static boolean isExon() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 146 end line: 148 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9262 unit: public static boolean isExon() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 155 end line: 157 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9263 unit: public static boolean isTranscript() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 164 end line: 166 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9264 unit: public static boolean isTranscript() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 173 end line: 175 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9265 unit: public String getId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9266 unit: public String getParentId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9267 unit: public Map getAttributes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9268 unit: public String getFeatureId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9269 unit: public String getFeatureName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 152 end line: 154 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9270 unit: public String getSeqName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 187 end line: 189 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9271 unit: public String getSource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 192 end line: 194 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9272 unit: public String getFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 197 end line: 199 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9273 unit: public float getScore() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 202 end line: 204 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9274 unit: public StrandSerializable getStrand() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 207 end line: 209 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9275 unit: public int getFrame() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 212 end line: 214 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9276 unit: public boolean isCodingExon() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 217 end line: 219 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9277 unit: public String getChr() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 222 end line: 224 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9278 unit: public String getContig() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 227 end line: 229 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9279 unit: public int getStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 232 end line: 234 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9280 unit: public int getEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 237 end line: 239 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9281 unit: public String getGroupId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 272 end line: 274 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9282 unit: public void setGroupId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 276 end line: 278 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9283 unit: public String getUid() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 280 end line: 282 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9284 unit: public void setUid() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 284 end line: 286 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9285 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 289 end line: 291 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9286 unit: private String encodeAttribute() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffFeature.java start line: 339 end line: 341 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 9287 unit: public Object readActualHeader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffCodec.java start line: 155 end line: 157 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9288 unit: public boolean canDecode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GffCodec.java start line: 160 end line: 162 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 9289 unit: public GtfFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GtfFeature.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9290 unit: public GtfFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GtfFeature.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9291 unit: public String getTransriptId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GtfFeature.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9292 unit: public String getGroupValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GtfFeature.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9293 unit: public Map getAttributes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GtfFeature.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9294 unit: public String getFeatureName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/GtfFeature.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9295 unit: public String toString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/StrandSerializable.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9296 unit: public String getFileValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/parser/StrandSerializable.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9297 unit: private Activity buildAttributeCreateActivity() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneActivityService.java start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9298 unit: private Activity buildAttributeDeleteActivity() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneActivityService.java start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9299 unit: public GeneFile registerGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9300 unit: public GeneFile unregisterGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9301 unit: public GeneFile reindexGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 9302 unit: public Track loadGenes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9303 unit: public DimStructure getPBDItemsFromBD() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9304 unit: public Track loadHistogram() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9305 unit: public ProteinSequence loadProteinSequenceForFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 144 end line: 146 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9306 unit: public GeneHighLevel loadGeneFeatureByUid() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9307 unit: public GeneHighLevel updateGeneFeatureByUid() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 9308 unit: public List loadGeneActivity() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 159 end line: 161 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9309 unit: public IndexSearchResult searchFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneSecurityService.java start line: 164 end line: 166 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9310 unit: public Gff3FeatureImpl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9311 unit: public boolean isTopLevelFeature() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9312 unit: public Set getParents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9313 unit: public Set getChildren() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9314 unit: public Gff3BaseData getBaseData() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9315 unit: public Set getCoFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9316 unit: public boolean hasParents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 165 end line: 167 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9317 unit: public boolean hasChildren() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9318 unit: public boolean hasCoFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 176 end line: 178 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9319 unit: private void addChild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 194 end line: 196 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9320 unit: public int hashCode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 261 end line: 264 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9321 unit: public String getChr() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 279 end line: 281 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9322 unit: private void addNode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3FeatureImpl.java start line: 304 end line: 306 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9323 unit: default String getSource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Feature.java start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9324 unit: default int getEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Feature.java start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9325 unit: default StrandSerializable getStrand() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Feature.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9326 unit: default String getPhase() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Feature.java start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9327 unit: default String getType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Feature.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9328 unit: default String getContig() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Feature.java start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9329 unit: default int getStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Feature.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9330 unit: default List getAttribute() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Feature.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9331 unit: default String getID() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Feature.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9332 unit: default String getName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Feature.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9333 unit: default List getAliases() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Feature.java start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9334 unit: default String getScore() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Feature.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9335 unit: protected String escapeString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9336 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Writer.java start line: 183 end line: 185 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9337 unit: protected Object decode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Codec.java start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9338 unit: public List getAttribute() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3BaseData.java start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9339 unit: private List buildFeatureIdAttribute() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsToGffConvertor.java start line: 204 end line: 206 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9340 unit: private String buildAdditionalColumnValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsToGffConvertor.java start line: 235 end line: 237 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 9341 unit: public SortingCollection getResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsLineProcessor.java start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9342 unit: private boolean notEnoughColumns() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsLineProcessor.java start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9343 unit: private int getMemory() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsLineProcessor.java start line: 144 end line: 146 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 9344 unit: private long getFilePosition() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneRegisterer.java start line: 473 end line: 475 size: 3 LOC McCabe index: 2 number of parameters: 3 id: 9345 unit: public InputStream loadContent() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectDescriptionService.java start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9346 unit: public List loadDescriptions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectDescriptionService.java start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9347 unit: public List loadTopLevelProjects() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9348 unit: public AclClass getSupportedClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 208 end line: 210 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9349 unit: public Project create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 249 end line: 251 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9350 unit: private void updateLastOpenedDate() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectManager.java start line: 452 end line: 454 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9351 unit: public List loadTopLevelProjects() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9352 unit: public List loadProjectTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9353 unit: public Project load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9354 unit: public Project load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9355 unit: public Project create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9356 unit: public void moveProjectToParent() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9357 unit: public Project addProjectItem() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9358 unit: public Project removeProjectItem() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9359 unit: public void hideProjectItem() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9360 unit: public Project deleteProject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9361 unit: public void renameProject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 9362 unit: public List loadProjectDescriptions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9363 unit: public InputStream loadProjectDescription() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9364 unit: public ProjectDescription deleteProjectDescription() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9365 unit: public List deleteProjectDescriptions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/project/ProjectSecurityService.java start line: 144 end line: 146 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9366 unit: public String getFileNameFromUrlString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/DownloadFileManager.java start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9367 unit: private long getMaxFileSizeInMByte() file: server/catgenome/src/main/java/com/epam/catgenome/manager/DownloadFileManager.java start line: 197 end line: 199 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9368 unit: private long getMaxFileDownloadTimeSec() file: server/catgenome/src/main/java/com/epam/catgenome/manager/DownloadFileManager.java start line: 201 end line: 203 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9369 unit: public static boolean isEmptyStrain() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 185 end line: 187 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9370 unit: private boolean isOutOfBounds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/reader/VcfFileReader.java start line: 233 end line: 235 size: 3 LOC McCabe index: 4 number of parameters: 3 id: 9371 unit: public void setIndexBufferSize() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 521 end line: 523 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9372 unit: private boolean checkMetaMapKey() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 744 end line: 746 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 9373 unit: protected void setExtendedInfoTemplates() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfManager.java start line: 929 end line: 931 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9374 unit: public VcfFile registerVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfSecurityService.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9375 unit: public VcfFile reindexVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfSecurityService.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9376 unit: public VcfFile unregisterVcfFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfSecurityService.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9377 unit: public Variation loadVariation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfSecurityService.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9378 unit: public void setVcfAliases() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfSecurityService.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9379 unit: public AclClass getSupportedClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfFileManager.java start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9380 unit: public Long createVcfFileId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/vcf/VcfFileManager.java start line: 171 end line: 173 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9381 unit: public Bucket load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bucket/BucketManager.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9382 unit: public AclClass getSupportedClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bucket/BucketManager.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9383 unit: public List loadAllBucket() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bucket/BucketManager.java start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9384 unit: public LineageTree loadLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeSecurityService.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9385 unit: public List loadLineageTrees() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeSecurityService.java start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 9386 unit: public List loadAllLineageTrees() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeSecurityService.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9387 unit: public LineageTree createLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeSecurityService.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9388 unit: public void deleteLineageTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeSecurityService.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9389 unit: public void updateLineageTreePaths() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeManager.java start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9390 unit: public List loadAllLineageTrees() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeManager.java start line: 138 end line: 140 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9391 unit: private Map getNodesMap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/lineage/LineageTreeManager.java start line: 254 end line: 256 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9392 unit: public static Set getGenePredExtensions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genepred/GenePredUtils.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9393 unit: public static boolean isGenePred() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genepred/GenePredUtils.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9394 unit: public void deleteFromIndexByFileId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 162 end line: 164 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9395 unit: private FeatureFile getGeneFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FeatureIndexManager.java start line: 782 end line: 784 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9396 unit: private PrefixQuery buildPrefixQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 475 end line: 477 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9397 unit: private long getGroupId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 479 end line: 481 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9398 unit: private long getVersion() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 483 end line: 485 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9399 unit: private String getCaption() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 487 end line: 489 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9400 unit: private long getTaxId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneManager.java start line: 491 end line: 493 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9401 unit: public void importHomologeneDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/homologene/HomologeneSecurityService.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9402 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ParameterNameValue.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9403 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ParameterNameValue.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9404 unit: public String getValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ParameterNameValue.java start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9405 unit: public void setValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ParameterNameValue.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9406 unit: public SearchResult getProteinPatentsGoogle() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/PatentsManager.java start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9407 unit: public SearchResult getProteinPatentsGoogle() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/PatentsSecurityService.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9408 unit: public BlastTask getPatents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/PatentsSecurityService.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9409 unit: public BlastTask getPatents() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/patents/PatentsSecurityService.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9410 unit: public FilterType getFilterType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneInfoManager.java start line: 150 end line: 152 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9411 unit: public SortField getDefaultSortField() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneInfoManager.java start line: 155 end line: 157 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9412 unit: public List processEntries() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneInfoManager.java start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9413 unit: public void setNcbiClinVarManager() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIShortVarManager.java start line: 220 end line: 222 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9414 unit: public List searchByEntrezIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIEnsemblIdsManager.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9415 unit: public SortField getDefaultSortField() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIEnsemblIdsManager.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9416 unit: public List processEntries() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIEnsemblIdsManager.java start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9417 unit: public FilterType getFilterType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIEnsemblIdsManager.java start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9418 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 383 end line: 385 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9419 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 387 end line: 389 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9420 unit: public String getId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 391 end line: 393 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9421 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 395 end line: 397 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9422 unit: public String getAnchor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 399 end line: 401 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9423 unit: public void setAnchor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/parser/NCBIGeneInfoParser.java start line: 403 end line: 405 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9424 unit: public static String extractSequenceId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBISequencesManager.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9425 unit: public static List getEntrezGeneIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneIdsManager.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9426 unit: public void generateClinVarLink() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIClinVarManager.java start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9427 unit: public List searchDbForIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIAuxiliaryManager.java start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9428 unit: public JsonNode fetchAnnotationInfoById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIAuxiliaryManager.java start line: 224 end line: 226 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9429 unit: private JsonNode getIdsByTerm() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIAuxiliaryManager.java start line: 246 end line: 248 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9430 unit: public String searchById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 152 end line: 154 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9431 unit: public ObjectMapper getMapper() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 318 end line: 320 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9432 unit: public void setMapper() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIDataManager.java start line: 322 end line: 324 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9433 unit: public void setGeneInfoParser() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ncbi/NCBIGeneManager.java start line: 278 end line: 280 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9434 unit: private static boolean isInChI() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pug/NCBIPugManager.java start line: 251 end line: 253 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9435 unit: private static String replaceHttpSymbols() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pug/NCBIPugManager.java start line: 255 end line: 257 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9436 unit: public String getSmiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pug/NCBIPugSecurityService.java start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9437 unit: public String getResultFromURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/HttpDataManager.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9438 unit: public Taxonomy searchOrganismById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomySecurityService.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9439 unit: public void writeLuceneTaxonomyIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomySecurityService.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9440 unit: private PrefixQuery buildPrefixQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 191 end line: 193 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9441 unit: private long getTaxId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 213 end line: 215 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9442 unit: private boolean taxonomyIdIsComplete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 238 end line: 240 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 9443 unit: private static boolean excludeLine() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/taxonomy/TaxonomyManager.java start line: 290 end line: 292 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9444 unit: public void setSegment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/PdbBlock.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9445 unit: public String getIntObjectId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/Segment.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9446 unit: public void setIntObjectId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/Segment.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9447 unit: public Integer getStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/Segment.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9448 unit: public void setStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/Segment.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9449 unit: public Integer getEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/Segment.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9450 unit: public void setEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/Segment.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9451 unit: public String getDbAccessionId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/AlignObject.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9452 unit: public void setDbAccessionId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/AlignObject.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9453 unit: public String getDbSource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/AlignObject.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9454 unit: public void setDbSource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/AlignObject.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9455 unit: public void setAlignment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/Dasalignment.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9456 unit: public Dasalignment createDasalignment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/ObjectFactory.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9457 unit: public Alignment createAlignment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/ObjectFactory.java start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9458 unit: public AlignObject createAlignObject() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/ObjectFactory.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9459 unit: public PdbBlock createPdbBlock() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/ObjectFactory.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9460 unit: public Segment createSegment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/ObjectFactory.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9461 unit: public void setBlock() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/ecsbpdbmap/Alignment.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9462 unit: public void setRecord() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/Dataset.java start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9463 unit: public Record createRecord() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/ObjectFactory.java start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9464 unit: public Dataset createDataset() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/ObjectFactory.java start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9465 unit: public String getStructureId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/Record.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9466 unit: public void setStructureId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/Record.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9467 unit: public String getStructureTitle() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/Record.java start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9468 unit: public void setStructureTitle() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/Record.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9469 unit: public String getClassification() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/Record.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9470 unit: public void setClassification() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/Record.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9471 unit: public String getCompound() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/Record.java start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9472 unit: public void setCompound() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/Record.java start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9473 unit: public String getChainId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/Record.java start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9474 unit: public void setChainId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/Record.java start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9475 unit: public String getUniprotRecommendedName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/Record.java start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9476 unit: public void setUniprotRecommendedName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/rcsbpbd/Record.java start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9477 unit: public void setMethod() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9478 unit: public void setTaxonomy() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9479 unit: public String getComment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9480 unit: public void setComment() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 172 end line: 174 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9481 unit: public String getHandle() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 213 end line: 215 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9482 unit: public void setHandle() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 225 end line: 227 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9483 unit: public String getBatch() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 237 end line: 239 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9484 unit: public void setBatch() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 249 end line: 251 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9485 unit: public Integer getBatchId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 261 end line: 263 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9486 unit: public void setBatchId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 273 end line: 275 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9487 unit: public String getBatchType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 285 end line: 287 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9488 unit: public void setBatchType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 297 end line: 299 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9489 unit: public String getMolType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 309 end line: 311 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9490 unit: public void setMolType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 321 end line: 323 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9491 unit: public Integer getSampleSize() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 333 end line: 335 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9492 unit: public void setSampleSize() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 345 end line: 347 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9493 unit: public String getPopulation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 357 end line: 359 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9494 unit: public void setPopulation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 369 end line: 371 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9495 unit: public String getLinkoutUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 381 end line: 383 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9496 unit: public void setLinkoutUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 393 end line: 395 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9497 unit: public String getException() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 440 end line: 442 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9498 unit: public void setException() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 452 end line: 454 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9499 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 464 end line: 466 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9500 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 476 end line: 478 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9501 unit: public String getId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 488 end line: 490 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9502 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 500 end line: 502 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9503 unit: public int getId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 538 end line: 540 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9504 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 546 end line: 548 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9505 unit: public String getOrganism() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 558 end line: 560 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9506 unit: public void setOrganism() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assay.java start line: 570 end line: 572 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9507 unit: public BigInteger getAsnFrom() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9508 unit: public void setAsnFrom() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9509 unit: public BigInteger getAsnTo() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9510 unit: public void setAsnTo() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9511 unit: public String getLocType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 161 end line: 163 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9512 unit: public void setLocType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 173 end line: 175 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9513 unit: public Double getAlnQuality() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 185 end line: 187 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9514 unit: public void setAlnQuality() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 197 end line: 199 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9515 unit: public String getOrient() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 209 end line: 211 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9516 unit: public void setOrient() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 221 end line: 223 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9517 unit: public Integer getPhysMapInt() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 233 end line: 235 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9518 unit: public void setPhysMapInt() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 245 end line: 247 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9519 unit: public Integer getLeftFlankNeighborPos() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 257 end line: 259 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9520 unit: public void setLeftFlankNeighborPos() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 269 end line: 271 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9521 unit: public Integer getRightFlankNeighborPos() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 281 end line: 283 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9522 unit: public void setRightFlankNeighborPos() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 293 end line: 295 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9523 unit: public Integer getLeftContigNeighborPos() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 305 end line: 307 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9524 unit: public void setLeftContigNeighborPos() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 317 end line: 319 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9525 unit: public Integer getRightContigNeighborPos() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 329 end line: 331 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9526 unit: public void setRightContigNeighborPos() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 341 end line: 343 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9527 unit: public Integer getNumberOfMismatches() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 353 end line: 355 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9528 unit: public void setNumberOfMismatches() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 365 end line: 367 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9529 unit: public Integer getNumberOfDeletions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 377 end line: 379 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9530 unit: public void setNumberOfDeletions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 389 end line: 391 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9531 unit: public Integer getNumberOfInsertions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 401 end line: 403 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9532 unit: public void setNumberOfInsertions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 413 end line: 415 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9533 unit: public String getRefAllele() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 425 end line: 427 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9534 unit: public void setRefAllele() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/MapLoc.java start line: 437 end line: 439 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9535 unit: public String getProtAcc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9536 unit: public void setProtAcc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9537 unit: public Integer getProtGi() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9538 unit: public void setProtGi() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9539 unit: public Integer getProtLoc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 136 end line: 138 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9540 unit: public void setProtLoc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9541 unit: public String getProtResidue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9542 unit: public void setProtResidue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 172 end line: 174 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9543 unit: public String getRsResidue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 184 end line: 186 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9544 unit: public void setRsResidue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 196 end line: 198 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9545 unit: public Integer getStructGi() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 208 end line: 210 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9546 unit: public void setStructGi() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 220 end line: 222 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9547 unit: public Integer getStructLoc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 232 end line: 234 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9548 unit: public void setStructLoc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 244 end line: 246 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9549 unit: public String getStructResidue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 256 end line: 258 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9550 unit: public void setStructResidue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsStruct.java start line: 268 end line: 270 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9551 unit: public String getComponentType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9552 unit: public void setComponentType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9553 unit: public Integer getCtgId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9554 unit: public void setCtgId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9555 unit: public String getAccession() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9556 unit: public void setAccession() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 166 end line: 168 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9557 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 178 end line: 180 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9558 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 190 end line: 192 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9559 unit: public String getChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 202 end line: 204 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9560 unit: public void setChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 214 end line: 216 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9561 unit: public Integer getStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 226 end line: 228 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9562 unit: public void setStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 238 end line: 240 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9563 unit: public Integer getEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 250 end line: 252 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9564 unit: public void setEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 262 end line: 264 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9565 unit: public String getOrientation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 274 end line: 276 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9566 unit: public void setOrientation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 286 end line: 288 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9567 unit: public String getGi() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 298 end line: 300 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9568 unit: public void setGi() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 310 end line: 312 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9569 unit: public String getGroupTerm() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 322 end line: 324 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9570 unit: public void setGroupTerm() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 334 end line: 336 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9571 unit: public String getContigLabel() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 346 end line: 348 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9572 unit: public void setContigLabel() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Component.java start line: 358 end line: 360 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9573 unit: public Ss createSs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ObjectFactory.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9574 unit: public Assay createAssay() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ObjectFactory.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9575 unit: public ExchangeSet createExchangeSet() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ObjectFactory.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9576 unit: public Rs createRs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ObjectFactory.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9577 unit: public Assembly createAssembly() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ObjectFactory.java start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9578 unit: public Component createComponent() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ObjectFactory.java start line: 163 end line: 165 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9579 unit: public MapLoc createMapLoc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ObjectFactory.java start line: 171 end line: 173 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9580 unit: public FxnSet createFxnSet() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ObjectFactory.java start line: 179 end line: 181 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9581 unit: public PrimarySequence createPrimarySequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ObjectFactory.java start line: 195 end line: 197 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9582 unit: public RsStruct createRsStruct() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ObjectFactory.java start line: 203 end line: 205 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9583 unit: public RsLinkout createRsLinkout() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ObjectFactory.java start line: 211 end line: 213 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9584 unit: public BaseURL createBaseURL() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ObjectFactory.java start line: 275 end line: 277 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9585 unit: public void setSourceDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9586 unit: public Assay getAssay() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9587 unit: public void setAssay() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 146 end line: 148 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9588 unit: public void setQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9589 unit: public void setSummary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 194 end line: 196 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9590 unit: public String getSetType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 235 end line: 237 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9591 unit: public void setSetType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 247 end line: 249 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9592 unit: public String getSetDepth() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 259 end line: 261 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9593 unit: public void setSetDepth() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 271 end line: 273 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9594 unit: public String getSpecVersion() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 283 end line: 285 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9595 unit: public void setSpecVersion() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 295 end line: 297 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9596 unit: public Integer getDbSnpBuild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 307 end line: 309 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9597 unit: public void setDbSnpBuild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 319 end line: 321 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9598 unit: public String getGenerated() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 331 end line: 333 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9599 unit: public void setGenerated() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 343 end line: 345 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9600 unit: public String getDate() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 383 end line: 385 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9601 unit: public void setDate() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 395 end line: 397 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9602 unit: public String getString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 407 end line: 409 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9603 unit: public void setString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 419 end line: 421 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9604 unit: public int getTaxId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 463 end line: 465 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9605 unit: public void setTaxId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 471 end line: 473 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9606 unit: public String getOrganism() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 483 end line: 485 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9607 unit: public void setOrganism() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 495 end line: 497 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9608 unit: public String getDbSnpOrgAbbr() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 507 end line: 509 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9609 unit: public void setDbSnpOrgAbbr() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 519 end line: 521 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9610 unit: public String getGpipeOrgAbbr() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 531 end line: 533 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9611 unit: public void setGpipeOrgAbbr() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 543 end line: 545 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9612 unit: public BigInteger getNumRsIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 606 end line: 608 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9613 unit: public void setNumRsIds() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 618 end line: 620 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9614 unit: public BigInteger getTotalSeqLength() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 630 end line: 632 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9615 unit: public void setTotalSeqLength() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 642 end line: 644 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9616 unit: public BigInteger getNumContigHits() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 654 end line: 656 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9617 unit: public void setNumContigHits() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 666 end line: 668 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9618 unit: public BigInteger getNumGeneHits() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 678 end line: 680 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9619 unit: public void setNumGeneHits() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 690 end line: 692 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9620 unit: public BigInteger getNumGiHits() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 702 end line: 704 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9621 unit: public void setNumGiHits() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 714 end line: 716 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9622 unit: public BigInteger getNum3DStructs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 726 end line: 728 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9623 unit: public void setNum3DStructs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 738 end line: 740 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9624 unit: public BigInteger getNumAlleleFreqs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 750 end line: 752 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9625 unit: public void setNumAlleleFreqs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 762 end line: 764 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9626 unit: public BigInteger getNumStsHits() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 774 end line: 776 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9627 unit: public void setNumStsHits() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 786 end line: 788 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9628 unit: public BigInteger getNumUnigeneCids() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 798 end line: 800 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9629 unit: public void setNumUnigeneCids() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/ExchangeSet.java start line: 810 end line: 812 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9630 unit: public void setSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 195 end line: 197 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9631 unit: public int getSsId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 202 end line: 204 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9632 unit: public void setSsId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 209 end line: 211 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9633 unit: public String getHandle() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 219 end line: 221 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9634 unit: public void setHandle() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 229 end line: 231 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9635 unit: public int getBatchId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 236 end line: 238 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9636 unit: public void setBatchId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 243 end line: 245 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9637 unit: public String getLocSnpId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 253 end line: 255 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9638 unit: public void setLocSnpId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 263 end line: 265 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9639 unit: public String getSubSnpClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 273 end line: 275 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9640 unit: public void setSubSnpClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 283 end line: 285 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9641 unit: public String getOrient() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 293 end line: 295 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9642 unit: public void setOrient() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 303 end line: 305 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9643 unit: public String getStrand() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 313 end line: 315 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9644 unit: public void setStrand() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 323 end line: 325 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9645 unit: public String getMolType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 333 end line: 335 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9646 unit: public void setMolType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 343 end line: 345 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9647 unit: public Integer getBuildId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 353 end line: 355 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9648 unit: public void setBuildId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 363 end line: 365 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9649 unit: public String getMethodClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 373 end line: 375 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9650 unit: public void setMethodClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 383 end line: 385 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9651 unit: public String getValidated() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 393 end line: 395 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9652 unit: public void setValidated() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 403 end line: 405 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9653 unit: public String getLinkoutUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 413 end line: 415 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9654 unit: public void setLinkoutUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 423 end line: 425 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9655 unit: public String getSsAlias() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 433 end line: 435 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9656 unit: public void setSsAlias() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 443 end line: 445 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9657 unit: public BigInteger getAlleleOrigin() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 453 end line: 455 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9658 unit: public void setAlleleOrigin() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 463 end line: 465 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9659 unit: public String getClinicalSignificance() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 473 end line: 475 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9660 unit: public void setClinicalSignificance() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 483 end line: 485 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9661 unit: public String getSeq5() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 528 end line: 530 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9662 unit: public void setSeq5() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 538 end line: 540 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9663 unit: public String getObserved() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 548 end line: 550 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9664 unit: public void setObserved() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 558 end line: 560 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9665 unit: public String getSeq3() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 568 end line: 570 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9666 unit: public void setSeq3() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Ss.java start line: 578 end line: 580 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9667 unit: public int getDbSnpBuild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/PrimarySequence.java start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9668 unit: public void setDbSnpBuild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/PrimarySequence.java start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9669 unit: public int getGi() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/PrimarySequence.java start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9670 unit: public void setGi() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/PrimarySequence.java start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9671 unit: public String getSource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/PrimarySequence.java start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9672 unit: public void setSource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/PrimarySequence.java start line: 136 end line: 138 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9673 unit: public String getAccession() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/PrimarySequence.java start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9674 unit: public void setAccession() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/PrimarySequence.java start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9675 unit: public void setHet() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9676 unit: public void setValidation() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9677 unit: public void setCreate() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9678 unit: public void setUpdate() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9679 unit: public void setSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9680 unit: public int getRsId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 225 end line: 227 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9681 unit: public void setRsId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 229 end line: 231 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9682 unit: public String getSnpClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 233 end line: 235 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9683 unit: public void setSnpClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 237 end line: 239 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9684 unit: public String getSnpType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 241 end line: 243 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9685 unit: public void setSnpType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 245 end line: 247 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9686 unit: public String getMolType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 249 end line: 251 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9687 unit: public void setMolType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 253 end line: 255 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9688 unit: public BigInteger getValidProbMin() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 257 end line: 259 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9689 unit: public void setValidProbMin() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 261 end line: 263 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9690 unit: public BigInteger getValidProbMax() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 265 end line: 267 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9691 unit: public void setValidProbMax() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 269 end line: 271 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9692 unit: public Boolean isGenotype() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 273 end line: 275 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9693 unit: public void setGenotype() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 277 end line: 279 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9694 unit: public String getBitField() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 281 end line: 283 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9695 unit: public void setBitField() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 286 end line: 288 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9696 unit: public Integer getTaxId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 290 end line: 292 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9697 unit: public void setTaxId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 294 end line: 296 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9698 unit: public BigInteger getValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 327 end line: 329 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9699 unit: public void setValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 331 end line: 333 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9700 unit: public String getAllele() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 335 end line: 337 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9701 unit: public void setAllele() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 339 end line: 341 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9702 unit: public Integer getBuild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 401 end line: 403 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9703 unit: public void setBuild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 405 end line: 407 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9704 unit: public String getDate() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 409 end line: 411 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9705 unit: public void setDate() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 413 end line: 415 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9706 unit: public Double getFreq() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 453 end line: 455 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9707 unit: public void setFreq() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 457 end line: 459 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9708 unit: public String getAllele() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 461 end line: 463 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9709 unit: public void setAllele() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 465 end line: 467 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9710 unit: public BigInteger getPopId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 469 end line: 471 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9711 unit: public void setPopId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 473 end line: 475 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9712 unit: public BigInteger getSampleSize() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 477 end line: 479 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9713 unit: public void setSampleSize() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 481 end line: 483 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9714 unit: public String getType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 525 end line: 527 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9715 unit: public void setType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 529 end line: 531 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9716 unit: public float getValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 533 end line: 535 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9717 unit: public void setValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 537 end line: 539 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9718 unit: public Float getStdError() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 541 end line: 543 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9719 unit: public void setStdError() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 545 end line: 547 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9720 unit: public int getRsId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 582 end line: 584 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9721 unit: public void setRsId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 586 end line: 588 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9722 unit: public Integer getBuildId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 590 end line: 592 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9723 unit: public void setBuildId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 594 end line: 596 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9724 unit: public Boolean isOrientFlip() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 598 end line: 600 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9725 unit: public void setOrientFlip() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 602 end line: 604 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9726 unit: public String getSeq5() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 669 end line: 671 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9727 unit: public void setSeq5() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 673 end line: 675 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9728 unit: public String getObserved() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 677 end line: 679 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9729 unit: public void setObserved() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 681 end line: 683 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9730 unit: public String getSeq3() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 685 end line: 687 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9731 unit: public void setSeq3() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 689 end line: 691 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9732 unit: public int getExemplarSs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 693 end line: 695 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9733 unit: public void setExemplarSs() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 697 end line: 699 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9734 unit: public String getAncestralAllele() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 701 end line: 703 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9735 unit: public void setAncestralAllele() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 705 end line: 707 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9736 unit: public Integer getBuild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 739 end line: 741 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9737 unit: public void setBuild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 743 end line: 745 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9738 unit: public String getDate() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 747 end line: 749 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9739 unit: public void setDate() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 751 end line: 753 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9740 unit: public Boolean isByCluster() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 837 end line: 839 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9741 unit: public void setByCluster() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 841 end line: 843 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9742 unit: public Boolean isByFrequency() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 845 end line: 847 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9743 unit: public void setByFrequency() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 849 end line: 851 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9744 unit: public Boolean isByOtherPop() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 853 end line: 855 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9745 unit: public void setByOtherPop() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 857 end line: 859 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9746 unit: public Boolean isBy2Hit2Allele() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 861 end line: 863 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9747 unit: public void setBy2Hit2Allele() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 865 end line: 867 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9748 unit: public Boolean isByHapMap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 869 end line: 871 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9749 unit: public void setByHapMap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 873 end line: 875 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9750 unit: public Boolean isBy1000G() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 877 end line: 879 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9751 unit: public void setBy1000G() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 881 end line: 883 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9752 unit: public Boolean isSuspect() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 885 end line: 887 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9753 unit: public void setSuspect() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Rs.java start line: 889 end line: 891 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9754 unit: public String getValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/BaseURL.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9755 unit: public void setValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/BaseURL.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9756 unit: public Integer getUrlId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/BaseURL.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9757 unit: public void setUrlId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/BaseURL.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9758 unit: public String getResourceName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/BaseURL.java start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9759 unit: public void setResourceName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/BaseURL.java start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9760 unit: public String getResourceId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/BaseURL.java start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9761 unit: public void setResourceId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/BaseURL.java start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9762 unit: public void setSnpStat() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9763 unit: public int getDbSnpBuild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9764 unit: public void setDbSnpBuild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9765 unit: public String getGenomeBuild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9766 unit: public void setGenomeBuild() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 151 end line: 153 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9767 unit: public String getGroupLabel() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 163 end line: 165 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9768 unit: public void setGroupLabel() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 175 end line: 177 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9769 unit: public String getAssemblySource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 187 end line: 189 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9770 unit: public void setAssemblySource() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 199 end line: 201 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9771 unit: public Boolean isCurrent() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 211 end line: 213 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9772 unit: public void setCurrent() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 223 end line: 225 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9773 unit: public Boolean isReference() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 235 end line: 237 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9774 unit: public void setReference() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 247 end line: 249 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9775 unit: public String getMapWeight() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 309 end line: 311 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9776 unit: public void setMapWeight() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 321 end line: 323 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9777 unit: public Integer getChromCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 333 end line: 335 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9778 unit: public void setChromCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 345 end line: 347 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9779 unit: public Integer getPlacedContigCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 357 end line: 359 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9780 unit: public void setPlacedContigCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 369 end line: 371 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9781 unit: public Integer getUnplacedContigCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 381 end line: 383 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9782 unit: public void setUnplacedContigCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 393 end line: 395 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9783 unit: public Integer getSeqlocCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 405 end line: 407 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9784 unit: public void setSeqlocCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 417 end line: 419 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9785 unit: public Integer getHapCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 429 end line: 431 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9786 unit: public void setHapCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/Assembly.java start line: 441 end line: 443 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9787 unit: public String getResourceId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsLinkout.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9788 unit: public void setResourceId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsLinkout.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9789 unit: public String getLinkValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsLinkout.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9790 unit: public void setLinkValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/RsLinkout.java start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9791 unit: public Integer getGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9792 unit: public void setGeneId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9793 unit: public String getSymbol() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9794 unit: public void setSymbol() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9795 unit: public String getMrnaAcc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9796 unit: public void setMrnaAcc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9797 unit: public Integer getMrnaVer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9798 unit: public void setMrnaVer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 157 end line: 159 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9799 unit: public String getProtAcc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 169 end line: 171 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9800 unit: public void setProtAcc() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 181 end line: 183 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9801 unit: public Integer getProtVer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 193 end line: 195 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9802 unit: public void setProtVer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 205 end line: 207 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9803 unit: public String getFxnClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 217 end line: 219 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9804 unit: public void setFxnClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 229 end line: 231 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9805 unit: public Integer getReadingFrame() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 241 end line: 243 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9806 unit: public void setReadingFrame() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 253 end line: 255 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9807 unit: public String getAllele() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 265 end line: 267 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9808 unit: public void setAllele() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 277 end line: 279 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9809 unit: public String getResidue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 289 end line: 291 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9810 unit: public void setResidue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 301 end line: 303 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9811 unit: public Integer getAaPosition() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 313 end line: 315 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9812 unit: public void setAaPosition() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 325 end line: 327 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9813 unit: public Integer getMrnaPosition() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 337 end line: 339 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9814 unit: public void setMrnaPosition() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 349 end line: 351 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9815 unit: public String getSoTerm() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 361 end line: 363 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9816 unit: public void setSoTerm() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/bindings/dbsnp/FxnSet.java start line: 373 end line: 375 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9817 unit: public String getFasta() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/sequence/NCBISequenceManager.java start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9818 unit: private String getProteinsGenbank() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/sequence/NCBISequenceManager.java start line: 179 end line: 181 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9819 unit: public String getFasta() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/sequence/SequenceSecurityService.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9820 unit: public PdbDataManager() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbDataManager.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9821 unit: private String replaceHttpSymbols() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/pdb/PdbDataManager.java start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9822 unit: private String getNcbiDbType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastUtilManager.java start line: 129 end line: 131 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 9823 unit: public T getPayload() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/dto/Result.java start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9824 unit: public void setPayload() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/dto/Result.java start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9825 unit: public String getMessage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/dto/Result.java start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9826 unit: public void setMessage() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/dto/Result.java start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9827 unit: public String getStatus() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/dto/Result.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9828 unit: public void setStatus() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/dto/Result.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9829 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastDatabaseManager.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9830 unit: public void updateTask() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 187 end line: 189 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9831 unit: public long getTasksCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 191 end line: 193 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9832 unit: public CreateDatabaseResponse createDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskManager.java start line: 225 end line: 227 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9833 unit: public void save() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastDatabaseSecurityService.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9834 unit: public void delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastDatabaseSecurityService.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9835 unit: public BlastDatabase loadById() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastDatabaseSecurityService.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9836 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastDatabaseSecurityService.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9837 unit: public BlastTask load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskSecurityService.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9838 unit: public BlastTask create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskSecurityService.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9839 unit: public void deleteTask() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskSecurityService.java start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9840 unit: public TaskPage loadAllTasks() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskSecurityService.java start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9841 unit: public long getTasksCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskSecurityService.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9842 unit: public void cancel() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskSecurityService.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9843 unit: public BlastRequestResult getResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskSecurityService.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9844 unit: public Collection getGroupedResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskSecurityService.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9845 unit: public ResponseBody getRawResult() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskSecurityService.java start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9846 unit: public void deleteTasks() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskSecurityService.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9847 unit: public CreateDatabaseResponse createDatabase() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastTaskSecurityService.java start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9848 unit: private void validateBlastEnabled() file: server/catgenome/src/main/java/com/epam/catgenome/manager/blast/BlastRequestManager.java start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9849 unit: public SearchResult search() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9850 unit: public Query getByPrefixQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 242 end line: 244 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9851 unit: public Query getByTermsQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/index/AbstractIndexManager.java start line: 246 end line: 248 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9852 unit: public void updateItemPath() file: server/catgenome/src/main/java/com/epam/catgenome/manager/UpdateItemPathScheduledService.java start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9853 unit: public NGBPathway loadPathway() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 200 end line: 202 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9854 unit: public List loadPathways() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 256 end line: 258 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9855 unit: public List loadPathwaySpecies() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 260 end line: 262 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9856 unit: private String getDocValue() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 436 end line: 438 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 9857 unit: private long getId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 440 end line: 442 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9858 unit: private Query buildQuery() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwayManager.java start line: 521 end line: 523 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 9859 unit: public NGBPathway loadPathway() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwaySecurityService.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9860 unit: public Page loadPathways() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwaySecurityService.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9861 unit: public List loadPathways() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwaySecurityService.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9862 unit: public NGBPathway registerPathway() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwaySecurityService.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9863 unit: public void registerBioPAX() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwaySecurityService.java start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9864 unit: public void deletePathway() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwaySecurityService.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9865 unit: public List loadSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pathway/PathwaySecurityService.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9866 unit: public static void setInstance() file: server/catgenome/src/main/java/com/epam/catgenome/manager/aws/S3Manager.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9867 unit: public S3Manager() file: server/catgenome/src/main/java/com/epam/catgenome/manager/aws/S3Manager.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9868 unit: public static String generateSignedUrl() file: server/catgenome/src/main/java/com/epam/catgenome/manager/aws/S3Manager.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9869 unit: AmazonS3 getClient() file: server/catgenome/src/main/java/com/epam/catgenome/manager/aws/S3Manager.java start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9870 unit: public Long createSegFileId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegFileManager.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9871 unit: public AclClass getSupportedClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegFileManager.java start line: 144 end line: 146 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9872 unit: public SegCodec() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/SegCodec.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9873 unit: public Object readActualHeader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/SegCodec.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9874 unit: public boolean canDecode() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/SegCodec.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9875 unit: public String getChr() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/NggbSegFeature.java start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9876 unit: public String getContig() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/NggbSegFeature.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9877 unit: public int getStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/NggbSegFeature.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9878 unit: public void setStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/NggbSegFeature.java start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9879 unit: public int getEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/NggbSegFeature.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9880 unit: public void setEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/NggbSegFeature.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9881 unit: public String getId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/NggbSegFeature.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9882 unit: public Integer getNumMark() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/NggbSegFeature.java start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9883 unit: public void setNumMark() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/NggbSegFeature.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9884 unit: public Float getSegMean() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/NggbSegFeature.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9885 unit: public void setSegMean() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/parser/NggbSegFeature.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9886 unit: public SegFile registerSegFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegSecurityService.java start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9887 unit: public SegFile unregisterSegFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegSecurityService.java start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9888 unit: public SampledTrack loadFeatures() file: server/catgenome/src/main/java/com/epam/catgenome/manager/seg/SegSecurityService.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9889 unit: public final String getPath() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 274 end line: 276 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9890 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 289 end line: 291 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9891 unit: public String getBaseDirPath() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 324 end line: 326 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9892 unit: public boolean isFilesBrowsingAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 333 end line: 335 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9893 unit: public boolean isUrlsBrowsingAllowed() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 342 end line: 344 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9894 unit: public File getTempDir() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 352 end line: 354 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9895 unit: public void makeMafIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1760 end line: 1762 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9896 unit: public void makeBigMafIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 1815 end line: 1817 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9897 unit: public String getNgsDataRootPath() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2202 end line: 2204 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9898 unit: private String toRealPath() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2243 end line: 2245 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9899 unit: private String substitute() file: server/catgenome/src/main/java/com/epam/catgenome/manager/FileManager.java start line: 2289 end line: 2291 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9900 unit: public Heatmap loadHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapSecurityService.java start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9901 unit: public List loadHeatmaps() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapSecurityService.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9902 unit: public Heatmap createHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapSecurityService.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9903 unit: public void deleteHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapSecurityService.java start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9904 unit: public HeatmapTree getTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapSecurityService.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9905 unit: public void updateRowTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapSecurityService.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9906 unit: public void updateColumnTree() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapSecurityService.java start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9907 unit: public void updateHeatmapPaths() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 180 end line: 182 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9908 unit: public Heatmap loadHeatmap() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 191 end line: 193 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9909 unit: public List loadHeatmaps() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 195 end line: 197 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9910 unit: private HeatmapAnnotationType getAnnotationType() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 469 end line: 471 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9911 unit: private Set getLabelSet() file: server/catgenome/src/main/java/com/epam/catgenome/manager/heatmap/HeatmapManager.java start line: 491 end line: 493 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9912 unit: public static String getString() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/ExcelExportUtils.java start line: 89 end line: 91 size: 3 LOC McCabe index: 3 number of parameters: 1 id: 9913 unit: public static VcfField getByField() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/VcfField.java start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9914 unit: public Function getGetter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/VcfField.java start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9915 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/VcfField.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9916 unit: public static GeneField getByField() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/GeneField.java start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9917 unit: public Function getGetter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/GeneField.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9918 unit: public String getName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/GeneField.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9919 unit: public LinkedHashMap process() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/NGBGenbankReader.java start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9920 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/NGBGenbankReader.java start line: 159 end line: 161 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9921 unit: public static Set getGenbankExtensions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/GenbankUtils.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9922 unit: public static boolean isGenbank() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/GenbankUtils.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9923 unit: private static String parseSequenceNameFromHeader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/GenbankUtils.java start line: 85 end line: 87 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 9924 unit: public MetadataVO get() file: server/catgenome/src/main/java/com/epam/catgenome/manager/metadata/MetadataManager.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9925 unit: public MetadataVO delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/metadata/MetadataManager.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9926 unit: public MetadataVO upsert() file: server/catgenome/src/main/java/com/epam/catgenome/manager/metadata/MetadataSecurityService.java start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9927 unit: public MetadataVO get() file: server/catgenome/src/main/java/com/epam/catgenome/manager/metadata/MetadataSecurityService.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9928 unit: public PdbFile create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileSecurityService.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9929 unit: public void updateMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileSecurityService.java start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9930 unit: public void delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileSecurityService.java start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9931 unit: public PdbFile load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileSecurityService.java start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9932 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileSecurityService.java start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9933 unit: public Page load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileSecurityService.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9934 unit: public PdbFile load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileManager.java start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9935 unit: public List load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileManager.java start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9936 unit: public long totalCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/pdb/PdbFileManager.java start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9937 unit: public List loadAllReferenceGenomes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9938 unit: public Reference load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9939 unit: public Reference loadReferenceGenomeByBioItemId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9940 unit: public List loadChromosomes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9941 unit: public Chromosome loadChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9942 unit: public Track getNucleotidesResultFromNib() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9943 unit: public Reference registerGenome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9944 unit: public Reference updateReferenceGeneFileId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9945 unit: public Reference unregisterGenome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9946 unit: public Species registerSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 124 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9947 unit: public Species updateSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9948 unit: public Species unregisterSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9949 unit: public List loadAllSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9950 unit: public Reference updateSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 146 end line: 148 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9951 unit: public Reference updateProteinSeqFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 152 end line: 154 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9952 unit: public List getReferenceAnnotationFiles() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9953 unit: public MotifSearchResult getTableByMotif() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 169 end line: 171 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9954 unit: public StrandedSequence getNextMotif() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 174 end line: 176 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9955 unit: public StrandedSequence getPrevMotif() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceSecurityService.java start line: 179 end line: 181 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9956 unit: public FastaIndex() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaIndex.java start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9957 unit: public Set getSequenceNames() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaIndex.java start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9958 unit: public FastaSequenceIndexEntry getIndexEntry() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaIndex.java start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9959 unit: public String getContig() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaIndex.java start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9960 unit: public long getPosition() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaIndex.java start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9961 unit: public long getSize() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaIndex.java start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9962 unit: public int getBasesPerLine() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaIndex.java start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9963 unit: public int getBytesPerLine() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaIndex.java start line: 144 end line: 146 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9964 unit: public SAMSequenceDictionary getSequenceDictionary() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/ChromosomeReferenceSequence.java start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9965 unit: public void reset() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/ChromosomeReferenceSequence.java start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9966 unit: public boolean isIndexed() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/ChromosomeReferenceSequence.java start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9967 unit: private ReferenceSequence getSequence() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/ChromosomeReferenceSequence.java start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9968 unit: public static Set getFastaExtensions() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaUtils.java start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9969 unit: public static boolean isFasta() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaUtils.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9970 unit: public static void indexFasta() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaUtils.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9971 unit: private double encodingGCContent() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 566 end line: 568 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9972 unit: public CytobandRecord getRecord() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandReader.java start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9973 unit: public static CytobandReader getInstance() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandReader.java start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9974 unit: public static CytobandReader getInstance() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandReader.java start line: 157 end line: 159 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9975 unit: private String getText() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandReader.java start line: 225 end line: 227 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 9976 unit: public int index() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandReader.java start line: 263 end line: 265 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9977 unit: public final String getChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandRecord.java start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9978 unit: public final void setChromosome() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandRecord.java start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9979 unit: public final List getBands() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandRecord.java start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9980 unit: public final void setBands() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/cytoband/CytobandRecord.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9981 unit: public Set getChromosomeNames() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaSequenceFile.java start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9982 unit: public int getSequenceSize() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaSequenceFile.java start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9983 unit: private GCContainer init4GC() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataWriter.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9984 unit: private boolean isNibReference() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceManager.java start line: 661 end line: 663 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 9985 unit: public Long createReferenceId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9986 unit: public List loadAllReferenceGenomes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 240 end line: 242 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9987 unit: public List loadAllFile() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 331 end line: 333 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9988 unit: public List loadReferenceIdsByAnnotationFileId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 352 end line: 354 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9989 unit: public boolean isRegistered() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 389 end line: 391 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9990 unit: public List loadAllSpecies() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 465 end line: 467 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9991 unit: public Species loadSpeciesByVersion() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 470 end line: 472 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9992 unit: public AclClass getSupportedClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/ReferenceGenomeManager.java start line: 510 end line: 512 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9993 unit: public MotifSearchResult search() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/MotifSearchManager.java start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9994 unit: public List loadAllBookmarks() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/BookmarkManager.java start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9995 unit: public AclClass getSupportedClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/BookmarkManager.java start line: 173 end line: 175 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9996 unit: public List filter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/session/NGBSessionManager.java start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9997 unit: public AclClass getSupportedClass() file: server/catgenome/src/main/java/com/epam/catgenome/manager/session/NGBSessionManager.java start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 9998 unit: public NGBSession create() file: server/catgenome/src/main/java/com/epam/catgenome/manager/session/NGBSessionSecurityService.java start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 9999 unit: public List filter() file: server/catgenome/src/main/java/com/epam/catgenome/manager/session/NGBSessionSecurityService.java start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10000 unit: public NGBSession load() file: server/catgenome/src/main/java/com/epam/catgenome/manager/session/NGBSessionSecurityService.java start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10001 unit: public NGBSession update() file: server/catgenome/src/main/java/com/epam/catgenome/manager/session/NGBSessionSecurityService.java start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10002 unit: public NGBSession delete() file: server/catgenome/src/main/java/com/epam/catgenome/manager/session/NGBSessionSecurityService.java start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10003 unit: public ResponseException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/ResponseException.java start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10004 unit: public ResponseException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/ResponseException.java start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10005 unit: public DownloadingTimeoutException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/DownloadingTimeoutException.java start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10006 unit: public CloudPipelineUnavailableException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/CloudPipelineUnavailableException.java start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10007 unit: public CloudPipelineUnavailableException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/CloudPipelineUnavailableException.java start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10008 unit: public S3ReadingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/S3ReadingException.java start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10009 unit: public NgbException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/NgbException.java start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10010 unit: public ExternalDbUnavailableException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/ExternalDbUnavailableException.java start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10011 unit: public ExternalDbUnavailableException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/ExternalDbUnavailableException.java start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10012 unit: public FeatureFileReadingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/FeatureFileReadingException.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10013 unit: public FeatureFileReadingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/FeatureFileReadingException.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10014 unit: public RegistrationException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/RegistrationException.java start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10015 unit: public RegistrationException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/RegistrationException.java start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10016 unit: public UnsupportedGeneFileTypeException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/UnsupportedGeneFileTypeException.java start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10017 unit: public AlignmentException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/AlignmentException.java start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10018 unit: public TMapException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/TMapException.java start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10019 unit: public FileParsingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/FileParsingException.java start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10020 unit: public FileParsingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/FileParsingException.java start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10021 unit: public IndexException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/IndexException.java start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10022 unit: public IndexException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/IndexException.java start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10023 unit: public SortingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/SortingException.java start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10024 unit: public SortingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/SortingException.java start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10025 unit: public SortingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/SortingException.java start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10026 unit: public TargetGenesException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/TargetGenesException.java start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10027 unit: public FeatureIndexException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/FeatureIndexException.java start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10028 unit: public FeatureIndexException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/FeatureIndexException.java start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10029 unit: public FeatureIndexException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/FeatureIndexException.java start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10030 unit: public Ga4ghResourceUnavailableException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/Ga4ghResourceUnavailableException.java start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10031 unit: public HistogramWritingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/HistogramWritingException.java start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10032 unit: public VcfReadingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/VcfReadingException.java start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10033 unit: public VcfReadingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/VcfReadingException.java start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10034 unit: public ReferenceReadingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/ReferenceReadingException.java start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10035 unit: public ReferenceReadingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/ReferenceReadingException.java start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10036 unit: public SamAlignmentException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/SamAlignmentException.java start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10037 unit: public TargetUpdateException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/TargetUpdateException.java start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10038 unit: public BlastRequestException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/BlastRequestException.java start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10039 unit: public BlastRequestException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/BlastRequestException.java start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10040 unit: public BedFileParsingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/BedFileParsingException.java start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10041 unit: public BedFileParsingException() file: server/catgenome/src/main/java/com/epam/catgenome/exception/BedFileParsingException.java start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10042 unit: register() file: client/client/dataServices/maf/maf-data-service.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 10043 unit: register() file: client/client/dataServices/bed/bed-data-service.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 10044 unit: register() file: client/client/dataServices/wig/wig-data-service.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 10045 unit: const resolveFn = function() file: client/client/dataServices/bam/bam-data-service.js start line: 56 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10046 unit: const catchFn = function() file: client/client/dataServices/bam/bam-data-service.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10047 unit: const thenFn = function() file: client/client/dataServices/bam/bam-data-service.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10048 unit: get authenticationMode() file: client/client/dataServices/data-service.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10049 unit: get token() file: client/client/dataServices/data-service.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10050 unit: static get serviceFactory() file: client/client/dataServices/data-service.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10051 unit: get() file: client/client/dataServices/data-service.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10052 unit: put() file: client/client/dataServices/data-service.js start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 10053 unit: post() file: client/client/dataServices/data-service.js start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 10054 unit: delete() file: client/client/dataServices/data-service.js start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 10055 unit: getFullUrl() file: client/client/dataServices/data-service.js start line: 161 end line: 163 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10056 unit: authenticate() file: client/client/dataServices/data-service.js start line: 185 end line: 187 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10057 unit: export function isHighlighted() file: client/client/dataServices/utils/highlight-condition-service.js start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10058 unit: register() file: client/client/dataServices/gene/gene-data-service.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 10059 unit: updateSettings() file: client/client/dataServices/local/local-data-service.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10060 unit: getDefaultSettings() file: client/client/dataServices/local/local-data-service.js start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10061 unit: getDictionary() file: client/client/dataServices/local/local-data-service.js start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10062 unit: static newUUUID() file: client/client/dataServices/local/local-data-service.js start line: 96 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10063 unit: searchGenes() file: client/client/dataServices/project/project-data-service.js start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10064 unit: getDatasetFileLink() file: client/client/dataServices/project/project-data-service.js start line: 297 end line: 299 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10065 unit: getVcfFieldInfo() file: client/client/dataServices/vcf/vcf-data-service.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10066 unit: register() file: client/client/dataServices/vcf/vcf-data-service.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 10067 unit: getVcfFieldValues() file: client/client/dataServices/vcf/vcf-data-service.js start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10068 unit: const buildDisplayTextFn = function() file: client/client/dataServices/vcf/vcf-analyzer.js start line: 151 end line: 153 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10069 unit: getNcbiGeneInfo() file: client/client/dataServices/externaldb/externaldb-data-service.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10070 unit: getEnsemblGeneInfo() file: client/client/dataServices/externaldb/externaldb-data-service.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10071 unit: getUniprotGeneInfo() file: client/client/dataServices/externaldb/externaldb-data-service.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10072 unit: getNcbiVariationInfo() file: client/client/dataServices/externaldb/externaldb-data-service.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10073 unit: register() file: client/client/dataServices/seg/seg-data-service.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 10074 unit: function generateRandomTreeItems() file: client/client/dataServices/heatmap/heatmap-data-service.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10075 unit: loadBookmark() file: client/client/dataServices/bookmark-data-service/bookmark-data-service.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10076 unit: deleteBookmark() file: client/client/dataServices/bookmark-data-service/bookmark-data-service.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10077 unit: saveBookmark() file: client/client/dataServices/bookmark-data-service/bookmark-data-service.js start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10078 unit: loadAllChromosomes() file: client/client/dataServices/genome/genome-data-service.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10079 unit: loadChromosome() file: client/client/dataServices/genome/genome-data-service.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10080 unit: static get UID() file: client/client/app/app.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10081 unit: $timeout() file: client/client/app/shared/directives/autofocus.directive.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10082 unit: static instance() file: client/client/app/shared/heatmapContext/index.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10083 unit: get initialized() file: client/client/app/shared/heatmapContext/index.js start line: 22 end line: 24 size: 3 LOC McCabe index: 3 number of parameters: 0 id: 10084 unit: get heatmap() file: client/client/app/shared/heatmapContext/index.js start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10085 unit: report() file: client/client/app/shared/heatmapContext/index.js start line: 153 end line: 155 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10086 unit: get targetStorageName() file: client/client/app/shared/targetContext/index.js start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10087 unit: get targetTab() file: client/client/app/shared/targetContext/index.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10088 unit: get mode() file: client/client/app/shared/targetContext/index.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10089 unit: get targetType() file: client/client/app/shared/targetContext/index.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10090 unit: get alignments() file: client/client/app/shared/targetContext/index.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10091 unit: get featureCoords() file: client/client/app/shared/targetContext/index.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10092 unit: get currentState() file: client/client/app/shared/targetContext/index.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10093 unit: set currentState() file: client/client/app/shared/targetContext/index.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10094 unit: get targetTableTotalPages() file: client/client/app/shared/targetContext/index.js start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10095 unit: set targetTableTotalPages() file: client/client/app/shared/targetContext/index.js start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10096 unit: get targetsTablePaginationIsVisible() file: client/client/app/shared/targetContext/index.js start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10097 unit: set targetsTablePaginationIsVisible() file: client/client/app/shared/targetContext/index.js start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10098 unit: get targetsTableActionsIsVisible() file: client/client/app/shared/targetContext/index.js start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10099 unit: set targetsTableActionsIsVisible() file: client/client/app/shared/targetContext/index.js start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10100 unit: get targetsTableResetFilterIsVisible() file: client/client/app/shared/targetContext/index.js start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10101 unit: set targetsTableResetFilterIsVisible() file: client/client/app/shared/targetContext/index.js start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10102 unit: get targetsFormActionsIsVisible() file: client/client/app/shared/targetContext/index.js start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10103 unit: set targetsFormActionsIsVisible() file: client/client/app/shared/targetContext/index.js start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10104 unit: set targetModelType() file: client/client/app/shared/targetContext/index.js start line: 132 end line: 134 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10105 unit: static instance() file: client/client/app/shared/targetContext/index.js start line: 136 end line: 138 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10106 unit: get coverageStatistics() file: client/client/app/shared/bamCoverageContext/index.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10107 unit: get isCoverageStatistics() file: client/client/app/shared/bamCoverageContext/index.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10108 unit: get currentBamId() file: client/client/app/shared/bamCoverageContext/index.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10109 unit: set currentBamId() file: client/client/app/shared/bamCoverageContext/index.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10110 unit: get isFiltersDefault() file: client/client/app/shared/bamCoverageContext/index.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10111 unit: set isFiltersDefault() file: client/client/app/shared/bamCoverageContext/index.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10112 unit: static instance() file: client/client/app/shared/bamCoverageContext/index.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 10113 unit: static instance() file: client/client/app/shared/appearanceContext/index.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10114 unit: get embedded() file: client/client/app/shared/appearanceContext/index.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10115 unit: get preventCloseLastTrack() file: client/client/app/shared/appearanceContext/index.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10116 unit: get closeLastTrackIgnoreFormats() file: client/client/app/shared/appearanceContext/index.js start line: 28 end line: 30 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10117 unit: get closeTracks() file: client/client/app/shared/appearanceContext/index.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10118 unit: get fitTracks() file: client/client/app/shared/appearanceContext/index.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10119 unit: get organizeTracks() file: client/client/app/shared/appearanceContext/index.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10120 unit: get genomeAnnotations() file: client/client/app/shared/appearanceContext/index.js start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10121 unit: get projectInfo() file: client/client/app/shared/appearanceContext/index.js start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10122 unit: get tracksSelection() file: client/client/app/shared/appearanceContext/index.js start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10123 unit: get close() file: client/client/app/shared/appearanceContext/index.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10124 unit: get maximise() file: client/client/app/shared/appearanceContext/index.js start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10125 unit: get vcfColumns() file: client/client/app/shared/appearanceContext/index.js start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10126 unit: get vcfDownload() file: client/client/app/shared/appearanceContext/index.js start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10127 unit: get genesColumns() file: client/client/app/shared/appearanceContext/index.js start line: 151 end line: 153 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10128 unit: get genesDownload() file: client/client/app/shared/appearanceContext/index.js start line: 162 end line: 164 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10129 unit: get coverageActions() file: client/client/app/shared/appearanceContext/index.js start line: 173 end line: 175 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10130 unit: function getIdentifier() file: client/client/app/shared/selectionContext/index.js start line: 7 end line: 9 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10131 unit: static instance() file: client/client/app/shared/selectionContext/index.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10132 unit: emitEvent() file: client/client/app/shared/dispatcher/dispatcher.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10133 unit: emitEventHub() file: client/client/app/shared/dispatcher/dispatcher.js start line: 28 end line: 30 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10134 unit: emitSimpleEvent() file: client/client/app/shared/dispatcher/dispatcher.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10135 unit: emitError() file: client/client/app/shared/dispatcher/dispatcher.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10136 unit: eventsCollection() file: client/client/app/shared/dispatcher/dispatcher.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10137 unit: static instance() file: client/client/app/shared/dispatcher/dispatcher.js start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10138 unit: constructor() file: client/client/app/shared/dispatcher/protocol/state.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10139 unit: get projectId() file: client/client/app/shared/dispatcher/protocol/state.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10140 unit: get chromosome() file: client/client/app/shared/dispatcher/protocol/state.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10141 unit: set chromosome() file: client/client/app/shared/dispatcher/protocol/state.js start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10142 unit: get position() file: client/client/app/shared/dispatcher/protocol/state.js start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10143 unit: set position() file: client/client/app/shared/dispatcher/protocol/state.js start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10144 unit: get rewriteLayout() file: client/client/app/shared/dispatcher/protocol/state.js start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10145 unit: set rewriteLayout() file: client/client/app/shared/dispatcher/protocol/state.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10146 unit: get viewport() file: client/client/app/shared/dispatcher/protocol/state.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10147 unit: set viewport() file: client/client/app/shared/dispatcher/protocol/state.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10148 unit: get toolbarVisibility() file: client/client/app/shared/dispatcher/protocol/state.js start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10149 unit: set toolbarVisibility() file: client/client/app/shared/dispatcher/protocol/state.js start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10150 unit: get bookmarkVisibility() file: client/client/app/shared/dispatcher/protocol/state.js start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10151 unit: set bookmarkVisibility() file: client/client/app/shared/dispatcher/protocol/state.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10152 unit: get screenShotVisibility() file: client/client/app/shared/dispatcher/protocol/state.js start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10153 unit: set screenShotVisibility() file: client/client/app/shared/dispatcher/protocol/state.js start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10154 unit: get name() file: client/client/app/shared/dispatcher/events/dispatcher-event.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10155 unit: get state() file: client/client/app/shared/dispatcher/events/dispatcher-event.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10156 unit: get id() file: client/client/app/shared/utils/events.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10157 unit: get vcfFileId() file: client/client/app/shared/utils/events.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10158 unit: get projectId() file: client/client/app/shared/utils/events.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10159 unit: get projectIdNumber() file: client/client/app/shared/utils/events.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10160 unit: get chromosome() file: client/client/app/shared/utils/events.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10161 unit: get type() file: client/client/app/shared/utils/events.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10162 unit: get endPoint() file: client/client/app/shared/utils/events.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10163 unit: get position() file: client/client/app/shared/utils/events.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10164 unit: get sample() file: client/client/app/shared/utils/events.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10165 unit: get endPoint() file: client/client/app/shared/utils/events.js start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10166 unit: get originalRead() file: client/client/app/shared/utils/events.js start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10167 unit: get geneId() file: client/client/app/shared/utils/events.js start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10168 unit: get geneName() file: client/client/app/shared/utils/events.js start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10169 unit: get transcriptId() file: client/client/app/shared/utils/events.js start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10170 unit: get geneTracks() file: client/client/app/shared/utils/events.js start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10171 unit: get trackId() file: client/client/app/shared/utils/events.js start line: 141 end line: 143 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10172 unit: get startIndex() file: client/client/app/shared/utils/events.js start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10173 unit: get endIndex() file: client/client/app/shared/utils/events.js start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10174 unit: get highlight() file: client/client/app/shared/utils/events.js start line: 153 end line: 155 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10175 unit: get pdb() file: client/client/app/shared/utils/events.js start line: 157 end line: 159 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10176 unit: get camera() file: client/client/app/shared/utils/events.js start line: 161 end line: 163 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10177 unit: get mode() file: client/client/app/shared/utils/events.js start line: 165 end line: 167 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10178 unit: get color() file: client/client/app/shared/utils/events.js start line: 169 end line: 171 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10179 unit: get chain() file: client/client/app/shared/utils/events.js start line: 173 end line: 175 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10180 unit: export function parseObjectInSubItems() file: client/client/app/shared/utils/Object.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10181 unit: export function calculateColor() file: client/client/app/shared/utils/calculateColor.js start line: 1 end line: 3 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10182 unit: constructor() file: client/client/app/shared/utils/debounce.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10183 unit: export function isString() file: client/client/app/shared/utils/String.js start line: 6 end line: 8 size: 3 LOC McCabe index: 4 number of parameters: 1 id: 10184 unit: function _getFormattedDatePart() file: client/client/app/shared/utils/date.js start line: 12 end line: 14 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10185 unit: static instance() file: client/client/app/shared/miewContext/index.js start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10186 unit: get info() file: client/client/app/shared/miewContext/index.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10187 unit: static instance() file: client/client/app/shared/eventHotkeys/index.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10188 unit: export default function() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.builder.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 5 id: 10189 unit: visible() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.builder.js start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10190 unit: function close() file: client/client/app/shared/ngbContextMenu/ngbContextMenu.directive.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10191 unit: static get UID() file: client/client/app/shared/components/ngbChat/ngbChat.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10192 unit: get myMessages() file: client/client/app/shared/components/ngbChat/ngbChat.controller.js start line: 14 end line: 16 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10193 unit: $onInit() file: client/client/app/shared/components/ngbChat/ngbChat.controller.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10194 unit: $onDestroy() file: client/client/app/shared/components/ngbChat/ngbChat.controller.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10195 unit: stopScrollCheck() file: client/client/app/shared/components/ngbChat/ngbChat.controller.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10196 unit: get dialogTitle() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 15 end line: 17 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10197 unit: get isNewUser() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10198 unit: get isValid() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 31 end line: 33 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10199 unit: static get UID() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10200 unit: clearErrors() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10201 unit: clearSearchTerm() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserForm/ngbUserForm.controller.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10202 unit: get dialogTitle() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 22 end line: 24 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10203 unit: get isNewGroup() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10204 unit: get deletable() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 30 end line: 32 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10205 unit: get isValid() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 34 end line: 36 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10206 unit: get selectedUsersStr() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 38 end line: 40 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10207 unit: static get UID() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10208 unit: $scope.searchFilter = function() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 62 end line: 64 size: 3 LOC McCabe index: 3 number of parameters: 1 id: 10209 unit: userAttributes: getUserAttributesString() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 90 end line: 92 size: 3 LOC McCabe index: 3 number of parameters: 1 id: 10210 unit: clearErrors() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10211 unit: clearSearchTerm() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbRoleForm/ngbRoleForm.controller.js start line: 152 end line: 154 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10212 unit: static instance() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10213 unit: getUser() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10214 unit: getRole() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10215 unit: _mapDefaultRolesData() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10216 unit: saveUser() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 141 end line: 143 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 10217 unit: deleteUser() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10218 unit: deleteGroup() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserRoleForm.service.js start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10219 unit: static get UID() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10220 unit: close() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10221 unit: static instance() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.service.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10222 unit: getUsers() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.service.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10223 unit: static get UID() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagement.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10224 unit: static get UID() file: client/client/app/shared/components/ngbMainToolbar/ngbShareLinkMenu/ngbShareLinkMenu.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10225 unit: showState() file: client/client/app/shared/components/ngbMainToolbar/ngbShareLinkMenu/ngbShareLinkMenu.controller.js start line: 88 end line: 90 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10226 unit: static get UID() file: client/client/app/shared/components/ngbMainToolbar/ngbBookmark/ngbBookmark.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10227 unit: static get UID() file: client/client/app/shared/components/ngbMainToolbar/ngbBookmark/ngbBookmarkSaveDlg.controller.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10228 unit: getterSetterName() file: client/client/app/shared/components/ngbMainToolbar/ngbBookmark/ngbBookmarkSaveDlg.controller.js start line: 38 end line: 40 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10229 unit: getterSetterDesc() file: client/client/app/shared/components/ngbMainToolbar/ngbBookmark/ngbBookmarkSaveDlg.controller.js start line: 42 end line: 44 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10230 unit: close() file: client/client/app/shared/components/ngbMainToolbar/ngbBookmark/ngbBookmarkSaveDlg.controller.js start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10231 unit: static get UID() file: client/client/app/shared/components/ngbMainToolbar/ngbInfoProduct/ngbInfoProduct.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10232 unit: constructor() file: client/client/app/shared/components/ngbMainToolbar/ngbInfoProduct/ngbInfoProduct.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10233 unit: static get UID() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10234 unit: get isDirectoryTyping() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 153 end line: 155 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10235 unit: startDirectoryTyping() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 209 end line: 211 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10236 unit: static trackNeedsIndexFile() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 231 end line: 233 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10237 unit: static trackIsIndexFile() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromNGBServer/ngbOpenFileFromNGBServer.controller.js start line: 235 end line: 237 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10238 unit: static get UID() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFile.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10239 unit: openFileFromNGBServer() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFile.controller.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10240 unit: openFileFromURL() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFile.controller.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10241 unit: static get UID() file: client/client/app/shared/components/ngbMainToolbar/ngbOpenFile/ngbOpenFileFromUrl/ngbOpenFileFromUrl.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10242 unit: static get UID() file: client/client/app/shared/components/ngbMainToolbar/ngbShareLink/ngbShareLink.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10243 unit: static get UID() file: client/client/app/shared/components/ngbMainToolbar/ngbToolWindows/ngbToolWindows.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10244 unit: restoreDefault() file: client/client/app/shared/components/ngbMainToolbar/ngbToolWindows/ngbToolWindows.controller.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10245 unit: static get UID() file: client/client/app/shared/components/ngbDatasetItemDownloadUrl/ngbDatasetItemDownloadUrl.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10246 unit: static get UID() file: client/client/app/shared/components/ngbMainSettings/ngbGroupedCheckbox/ngbGroupedCheckbox.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10247 unit: static get UID() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10248 unit: _setHotkeyToDisplay() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 34 end line: 36 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10249 unit: _applyUIChanges() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10250 unit: _emitFocusInLocalEvent() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10251 unit: _emitFocusInGlobalEvent() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10252 unit: _emitFocusOutLocalEvent() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10253 unit: _emitFocusOutGlobalEvent() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10254 unit: _resetCapturedHotkey() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10255 unit: _saveNewHotkeyToItem() file: client/client/app/shared/components/ngbMainSettings/ngbHotkeyInput/ngbHotkeyInput.controller.js start line: 67 end line: 69 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 10256 unit: static get UID() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettings.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10257 unit: static get UID() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.controller.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10258 unit: close() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.controller.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10259 unit: getterSetterMaximumBPForBam() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.controller.js start line: 81 end line: 83 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10260 unit: static instance() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10261 unit: _mergeHotkey() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbMainSettingsDlg.service.js start line: 70 end line: 72 size: 3 LOC McCabe index: 3 number of parameters: 1 id: 10262 unit: static get UID() file: client/client/app/shared/components/ngbMainSettings/ngbMainSettingsDlg/ngbCustomizationTableRow/ngbCustomizationTableRow.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10263 unit: static get UID() file: client/client/app/shared/components/ngbFloatingPanel/controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10264 unit: get dragging() file: client/client/app/shared/components/ngbFloatingPanel/controller.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10265 unit: get closable() file: client/client/app/shared/components/ngbFloatingPanel/controller.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10266 unit: $scope.cancel = function() file: client/client/app/shared/components/ngbLLM/ngbLLM.dialog.run.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10267 unit: export function modelsHasConfigurationProperties() file: client/client/app/shared/components/ngbLLM/utilities.js start line: 69 end line: 71 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10268 unit: static get UID() file: client/client/app/shared/components/ngbLLM/ngbLLM.controller.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10269 unit: get modelName() file: client/client/app/shared/components/ngbLLM/ngbLLM.controller.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10270 unit: get llmModels() file: client/client/app/shared/components/ngbLLM/ngbLLM.controller.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10271 unit: get hasConfigurableProperties() file: client/client/app/shared/components/ngbLLM/ngbLLM.controller.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10272 unit: static get UID() file: client/client/app/shared/components/ngbCytoscapeToolbarPanel/ngbCytoscapeToolbarPanel.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10273 unit: zoomIn() file: client/client/app/shared/components/ngbCytoscapeToolbarPanel/ngbCytoscapeToolbarPanel.controller.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10274 unit: zoomOut() file: client/client/app/shared/components/ngbCytoscapeToolbarPanel/ngbCytoscapeToolbarPanel.controller.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10275 unit: restoreDefault() file: client/client/app/shared/components/ngbCytoscapeToolbarPanel/ngbCytoscapeToolbarPanel.controller.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10276 unit: static instance() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayoutObj.service.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 10277 unit: get() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayoutObj.service.js start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10278 unit: static instance() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.service.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10279 unit: createBrowserItem() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.service.js start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10280 unit: export function stripTags() file: client/client/app/shared/components/ngbGoldenLayout/internal/goldenLayout.js start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10281 unit: static get UID() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10282 unit: onResize() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10283 unit: hideMaximiseIcon() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 132 end line: 134 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10284 unit: showMaximiseIcon() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10285 unit: static get UID() file: client/client/app/shared/components/ngbGoldenLayout/ngbViewActions/ngbCloseAllTracks/ngbCloseAllTracks.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10286 unit: static get UID() file: client/client/app/shared/components/ngbGoldenLayout/ngbViewActions/ngbViewAction/ngbViewAction.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10287 unit: constructor() file: client/client/app/shared/components/ngbGoldenLayout/ngbViewActions/ngbViewAction/ngbViewAction.controller.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10288 unit: doAction() file: client/client/app/shared/components/ngbGoldenLayout/ngbViewActions/ngbViewAction/ngbViewAction.controller.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10289 unit: getLength() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.search.results.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10290 unit: static get UID() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10291 unit: get isEditingMode() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 29 end line: 31 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10292 unit: get isProjectSelected() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10293 unit: $onInit() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10294 unit: onChromosomeChange() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 325 end line: 327 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10295 unit: filterChromosome() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 329 end line: 331 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10296 unit: get chromosome() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 368 end line: 370 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10297 unit: set chromosome() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/ngbCoordinates.controller.js start line: 372 end line: 374 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10298 unit: end: correctPosition() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/parse-coordinates.js start line: 152 end line: 154 size: 3 LOC McCabe index: 4 number of parameters: 2 id: 10299 unit: end: correctPosition() file: client/client/app/shared/components/ngbGoldenLayout/ngbCoordinates/parse-coordinates.js start line: 185 end line: 187 size: 3 LOC McCabe index: 3 number of parameters: 2 id: 10300 unit: static get UID() file: client/client/app/shared/components/ngbPagination/ngbPagination.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10301 unit: $onInit() file: client/client/app/shared/components/ngbPagination/ngbPagination.controller.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10302 unit: static get UID() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.controller.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10303 unit: get variantRenderer() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.controller.js start line: 176 end line: 178 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10304 unit: get variantRendererDiv() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.controller.js start line: 180 end line: 182 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10305 unit: static instance() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 7 id: 10306 unit: get project() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10307 unit: set project() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10308 unit: get referenceId() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10309 unit: set referenceId() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10310 unit: get chromosome() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10311 unit: set chromosome() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10312 unit: get genesFiles() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantVisualizer/ngbVariantVisualizer.service.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10313 unit: static get UID() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantInfo/ngbVariantInfo.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10314 unit: static instance() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantInfo/ngbVariantInfo.service.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 10315 unit: get chromosomeName() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantInfo/ngbVariantInfo.service.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10316 unit: set chromosomeName() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantInfo/ngbVariantInfo.service.js start line: 55 end line: 57 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10317 unit: static instance() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantDbSnp/ngbVariantDbSnp.service.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 10318 unit: static get UID() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantDbSnp/ngbVariantDbSnp.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10319 unit: static get UID() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantAnnotations/ngbVariantAnnotations.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10320 unit: INIT() file: client/client/app/shared/components/ngbVariantDetails/ngbVariantAnnotations/ngbVariantAnnotations.controller.js start line: 23 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10321 unit: static get UID() file: client/client/app/shared/components/ngbHeatmap/ngbHeatmap.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10322 unit: static get UID() file: client/client/app/shared/components/ngbTags/ngbTags.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10323 unit: get addTagLabel() file: client/client/app/shared/components/ngbTags/ngbTags.controller.js start line: 13 end line: 15 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10324 unit: static get UID() file: client/client/app/shared/components/ngbTags/ngbTag/ngbTag.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10325 unit: get isRemovable() file: client/client/app/shared/components/ngbTags/ngbTag/ngbTag.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10326 unit: static get UID() file: client/client/app/shared/components/ngbSearch/ngbSearch.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10327 unit: INIT() file: client/client/app/shared/components/ngbSearch/ngbSearch.controller.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10328 unit: changeSearch() file: client/client/app/shared/components/ngbSearch/ngbSearch.controller.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10329 unit: static get UID() file: client/client/app/shared/components/ngbHeader/ngbShareLinkMenu/ngbShareLinkMenu.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10330 unit: showState() file: client/client/app/shared/components/ngbHeader/ngbShareLinkMenu/ngbShareLinkMenu.controller.js start line: 62 end line: 64 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10331 unit: constructor() file: client/client/app/shared/components/ngbHeader/ngbHeaderProject.component.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10332 unit: static get UID() file: client/client/app/shared/components/ngbHeader/ngbShareLink/ngbShareLink.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10333 unit: static get UID() file: client/client/app/shared/components/ngbPanelErrorList/ngbPanelErrorList.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10334 unit: static get UID() file: client/client/app/shared/components/widgets/ngbColorPicker/ngbColorPicker.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10335 unit: hideOverlay() file: client/client/app/shared/components/widgets/ngbColorPicker/ngbColorPicker.controller.js start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10336 unit: showOverlay() file: client/client/app/shared/components/widgets/ngbColorPicker/ngbColorPicker.controller.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10337 unit: this.$onInit = function() file: client/client/app/shared/components/widgets/collapsiblePanel/collapsiblePanel.component.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10338 unit: this.addPanel = function() file: client/client/app/shared/components/widgets/collapsiblePanel/collapsible.component.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10339 unit: $timeout() file: client/client/app/shared/components/widgets/TextBox/ngAutoFocus.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10340 unit: static instance() file: client/client/app/shared/bisulfiteModeContext/index.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10341 unit: set items() file: client/client/app/shared/bisulfiteModeContext/index.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10342 unit: set reverseItems() file: client/client/app/shared/bisulfiteModeContext/index.js start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10343 unit: static instance() file: client/client/app/shared/projectContext/index.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 5 id: 10344 unit: get firstPageVariations() file: client/client/app/shared/projectContext/index.js start line: 155 end line: 157 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10345 unit: set firstPageVariations() file: client/client/app/shared/projectContext/index.js start line: 159 end line: 161 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10346 unit: get lastPageVariations() file: client/client/app/shared/projectContext/index.js start line: 163 end line: 165 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10347 unit: set lastPageVariations() file: client/client/app/shared/projectContext/index.js start line: 167 end line: 169 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10348 unit: set orderByVariations() file: client/client/app/shared/projectContext/index.js start line: 171 end line: 173 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10349 unit: get orderByVariations() file: client/client/app/shared/projectContext/index.js start line: 175 end line: 177 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10350 unit: get orderByColumnsVariations() file: client/client/app/shared/projectContext/index.js start line: 179 end line: 181 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10351 unit: get totalPagesCountVariations() file: client/client/app/shared/projectContext/index.js start line: 183 end line: 185 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10352 unit: set totalPagesCountVariations() file: client/client/app/shared/projectContext/index.js start line: 187 end line: 189 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10353 unit: get variationsPointer() file: client/client/app/shared/projectContext/index.js start line: 191 end line: 193 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10354 unit: set variationsPointer() file: client/client/app/shared/projectContext/index.js start line: 195 end line: 197 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10355 unit: get variationsPointerPage() file: client/client/app/shared/projectContext/index.js start line: 199 end line: 201 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10356 unit: set variationsPointerPage() file: client/client/app/shared/projectContext/index.js start line: 203 end line: 205 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10357 unit: get variationsPageSize() file: client/client/app/shared/projectContext/index.js start line: 207 end line: 209 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10358 unit: set currentPageVariations() file: client/client/app/shared/projectContext/index.js start line: 211 end line: 213 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10359 unit: get currentPageVariations() file: client/client/app/shared/projectContext/index.js start line: 215 end line: 217 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10360 unit: get hasMoreVariations() file: client/client/app/shared/projectContext/index.js start line: 219 end line: 221 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10361 unit: get hotkeys() file: client/client/app/shared/projectContext/index.js start line: 223 end line: 225 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10362 unit: set hotkeys() file: client/client/app/shared/projectContext/index.js start line: 227 end line: 229 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10363 unit: get references() file: client/client/app/shared/projectContext/index.js start line: 231 end line: 233 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10364 unit: get referenceId() file: client/client/app/shared/projectContext/index.js start line: 235 end line: 237 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10365 unit: get chromosomes() file: client/client/app/shared/projectContext/index.js start line: 239 end line: 241 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10366 unit: get currentChromosome() file: client/client/app/shared/projectContext/index.js start line: 243 end line: 245 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10367 unit: get position() file: client/client/app/shared/projectContext/index.js start line: 247 end line: 249 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10368 unit: get viewport() file: client/client/app/shared/projectContext/index.js start line: 251 end line: 253 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10369 unit: get blatRegion() file: client/client/app/shared/projectContext/index.js start line: 255 end line: 257 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10370 unit: get tracks() file: client/client/app/shared/projectContext/index.js start line: 259 end line: 261 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10371 unit: getTrackInstances() file: client/client/app/shared/projectContext/index.js start line: 263 end line: 265 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10372 unit: getAllTrackInstances() file: client/client/app/shared/projectContext/index.js start line: 267 end line: 269 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10373 unit: get vcfTracks() file: client/client/app/shared/projectContext/index.js start line: 271 end line: 273 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10374 unit: get geneTracks() file: client/client/app/shared/projectContext/index.js start line: 275 end line: 277 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10375 unit: get lastLocalTracks() file: client/client/app/shared/projectContext/index.js start line: 279 end line: 281 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10376 unit: get referenceIsPromised() file: client/client/app/shared/projectContext/index.js start line: 283 end line: 285 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10377 unit: get reference() file: client/client/app/shared/projectContext/index.js start line: 287 end line: 289 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10378 unit: get vcfFilterIsDefault() file: client/client/app/shared/projectContext/index.js start line: 291 end line: 293 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10379 unit: get genesFilterIsDefault() file: client/client/app/shared/projectContext/index.js start line: 295 end line: 297 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10380 unit: set genesFilterIsDefault() file: client/client/app/shared/projectContext/index.js start line: 299 end line: 301 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10381 unit: get bookmarksFilterIsDefault() file: client/client/app/shared/projectContext/index.js start line: 303 end line: 305 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10382 unit: set bookmarksFilterIsDefault() file: client/client/app/shared/projectContext/index.js start line: 307 end line: 309 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10383 unit: get isBrowserNarrow() file: client/client/app/shared/projectContext/index.js start line: 311 end line: 313 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10384 unit: set isBrowserNarrow() file: client/client/app/shared/projectContext/index.js start line: 315 end line: 317 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10385 unit: get vcfFilter() file: client/client/app/shared/projectContext/index.js start line: 319 end line: 321 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10386 unit: get vcfInfo() file: client/client/app/shared/projectContext/index.js start line: 323 end line: 325 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10387 unit: get vcfSampleAliases() file: client/client/app/shared/projectContext/index.js start line: 327 end line: 329 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10388 unit: get vcfSampleInfo() file: client/client/app/shared/projectContext/index.js start line: 331 end line: 333 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10389 unit: get vcfInfoColumns() file: client/client/app/shared/projectContext/index.js start line: 335 end line: 337 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10390 unit: get filteredVariants() file: client/client/app/shared/projectContext/index.js start line: 339 end line: 341 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10391 unit: get variantsDataByChromosomes() file: client/client/app/shared/projectContext/index.js start line: 343 end line: 345 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10392 unit: get variantsDataByType() file: client/client/app/shared/projectContext/index.js start line: 347 end line: 349 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10393 unit: get variantsDataByQuality() file: client/client/app/shared/projectContext/index.js start line: 351 end line: 353 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10394 unit: get isVariantsLoading() file: client/client/app/shared/projectContext/index.js start line: 355 end line: 357 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10395 unit: get isVariantsGroupByChromosomesLoading() file: client/client/app/shared/projectContext/index.js start line: 359 end line: 361 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10396 unit: get isVariantsGroupByTypeLoading() file: client/client/app/shared/projectContext/index.js start line: 363 end line: 365 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10397 unit: get isVariantsGroupByQualityLoading() file: client/client/app/shared/projectContext/index.js start line: 367 end line: 369 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10398 unit: get variantsGroupByChromosomesError() file: client/client/app/shared/projectContext/index.js start line: 371 end line: 373 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10399 unit: get variantsGroupByTypeError() file: client/client/app/shared/projectContext/index.js start line: 375 end line: 377 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10400 unit: get variantsGroupByQualityError() file: client/client/app/shared/projectContext/index.js start line: 379 end line: 381 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10401 unit: get variantsPageLoading() file: client/client/app/shared/projectContext/index.js start line: 389 end line: 391 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10402 unit: get variantsPageError() file: client/client/app/shared/projectContext/index.js start line: 393 end line: 395 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10403 unit: get containsVcfFiles() file: client/client/app/shared/projectContext/index.js start line: 397 end line: 399 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10404 unit: get rewriteLayout() file: client/client/app/shared/projectContext/index.js start line: 401 end line: 403 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10405 unit: set rewriteLayout() file: client/client/app/shared/projectContext/index.js start line: 405 end line: 407 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10406 unit: get highlightProfileConditions() file: client/client/app/shared/projectContext/index.js start line: 476 end line: 478 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10407 unit: get toolbarVisibility() file: client/client/app/shared/projectContext/index.js start line: 630 end line: 632 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10408 unit: set toolbarVisibility() file: client/client/app/shared/projectContext/index.js start line: 634 end line: 636 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10409 unit: get bookmarkVisibility() file: client/client/app/shared/projectContext/index.js start line: 638 end line: 640 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10410 unit: set bookmarkVisibility() file: client/client/app/shared/projectContext/index.js start line: 642 end line: 644 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10411 unit: get screenShotVisibility() file: client/client/app/shared/projectContext/index.js start line: 646 end line: 648 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10412 unit: set screenShotVisibility() file: client/client/app/shared/projectContext/index.js start line: 650 end line: 652 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10413 unit: get browsingAllowed() file: client/client/app/shared/projectContext/index.js start line: 654 end line: 656 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10414 unit: get ngbDefaultSettings() file: client/client/app/shared/projectContext/index.js start line: 658 end line: 660 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10415 unit: get datasetsLoaded() file: client/client/app/shared/projectContext/index.js start line: 680 end line: 682 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10416 unit: get datasets() file: client/client/app/shared/projectContext/index.js start line: 684 end line: 686 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10417 unit: get datasetsFilter() file: client/client/app/shared/projectContext/index.js start line: 688 end line: 690 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10418 unit: set datasetsFilter() file: client/client/app/shared/projectContext/index.js start line: 692 end line: 694 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10419 unit: get viewports() file: client/client/app/shared/projectContext/index.js start line: 698 end line: 700 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10420 unit: get collapsedTrackHeaders() file: client/client/app/shared/projectContext/index.js start line: 704 end line: 706 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10421 unit: async refreshBrowsingAllowedStatus() file: client/client/app/shared/projectContext/index.js start line: 831 end line: 833 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10422 unit: globalSettingsChangedHandler() file: client/client/app/shared/projectContext/index.js start line: 885 end line: 887 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10423 unit: const onSetToDefault = function() file: client/client/app/shared/projectContext/index.js start line: 921 end line: 923 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10424 unit: const onInit = function() file: client/client/app/shared/projectContext/index.js start line: 932 end line: 934 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10425 unit: get datasetsAreLoading() file: client/client/app/shared/projectContext/index.js start line: 953 end line: 955 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10426 unit: downloadProjectDescription() file: client/client/app/shared/projectContext/index.js start line: 1011 end line: 1013 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10427 unit: get referencesAreLoading() file: client/client/app/shared/projectContext/index.js start line: 1106 end line: 1108 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10428 unit: submitTracksStates() file: client/client/app/shared/projectContext/index.js start line: 1289 end line: 1291 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10429 unit: canScheduleFilterVariants() file: client/client/app/shared/projectContext/index.js start line: 1313 end line: 1315 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10430 unit: indexPath: decodeURIComponent() file: client/client/app/shared/projectContext/index.js start line: 1693 end line: 1695 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10431 unit: const findByIdFn = function() file: client/client/app/shared/projectContext/index.js start line: 2117 end line: 2119 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10432 unit: const findByNameFn = function() file: client/client/app/shared/projectContext/index.js start line: 2134 end line: 2136 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10433 unit: get layoutPanels() file: client/client/app/shared/projectContext/index.js start line: 2519 end line: 2521 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10434 unit: openPanel() file: client/client/app/shared/projectContext/index.js start line: 2523 end line: 2525 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10435 unit: closePanel() file: client/client/app/shared/projectContext/index.js start line: 2527 end line: 2529 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10436 unit: constructor() file: client/client/app/shared/baseController.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10437 unit: get isLoading() file: client/client/app/shared/filter/filterList/ngbFilterList.elements.js start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10438 unit: getLength() file: client/client/app/shared/filter/filterList/ngbFilterList.elements.js start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10439 unit: static instance() file: client/client/app/shared/notificationsContext/index.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10440 unit: static instance() file: client/client/app/shared/blastContext/index.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10441 unit: get search() file: client/client/app/shared/blastContext/index.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10442 unit: get alignments() file: client/client/app/shared/blastContext/index.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10443 unit: get featureCoords() file: client/client/app/shared/blastContext/index.js start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10444 unit: static instance() file: client/client/app/shared/motifsContext/index.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10445 unit: get match() file: client/client/app/shared/motifsContext/index.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10446 unit: set match() file: client/client/app/shared/motifsContext/index.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10447 unit: static instance() file: client/client/app/shared/services/stateParams.service.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10448 unit: constructor() file: client/client/app/shared/services/stateParams.service.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10449 unit: get firstPage() file: client/client/app/shared/services/clientPaginationService.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10450 unit: set firstPage() file: client/client/app/shared/services/clientPaginationService.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10451 unit: get totalPages() file: client/client/app/shared/services/clientPaginationService.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10452 unit: get currentPage() file: client/client/app/shared/services/clientPaginationService.js start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10453 unit: set currentPage() file: client/client/app/shared/services/clientPaginationService.js start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10454 unit: get pageSize() file: client/client/app/shared/services/clientPaginationService.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10455 unit: set pageSize() file: client/client/app/shared/services/clientPaginationService.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10456 unit: static instance() file: client/client/app/shared/services/trackNaming.service.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10457 unit: checkTrackValidity() file: client/client/app/shared/services/trackNaming.service.js start line: 13 end line: 15 size: 3 LOC McCabe index: 3 number of parameters: 1 id: 10458 unit: _isObject() file: client/client/app/shared/services/api.service.js start line: 637 end line: 639 size: 3 LOC McCabe index: 3 number of parameters: 1 id: 10459 unit: static instance() file: client/client/app/shared/services/color.service.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10460 unit: constructor() file: client/client/app/shared/services/color.service.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10461 unit: static instance() file: client/client/app/shared/lastActionRepeater/index.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10462 unit: static get UID() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoSections/ngbProjectInfoSections.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10463 unit: get descriptionAvailable() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoSections/ngbProjectInfoSections.controller.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10464 unit: get projects() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoSections/ngbProjectInfoSections.controller.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10465 unit: get multipleProjects() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoSections/ngbProjectInfoSections.controller.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10466 unit: get plainItems() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoSections/ngbProjectInfoSections.controller.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10467 unit: static get UID() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10468 unit: get projectInfoModeList() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10469 unit: get isProgressShown() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10470 unit: get currentNote() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10471 unit: get editingNote() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10472 unit: get newNote() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10473 unit: get canEdit() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10474 unit: get isEdit() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10475 unit: get heatmapId() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 62 end line: 64 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10476 unit: get heatmapProjectId() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 66 end line: 68 size: 3 LOC McCabe index: 3 number of parameters: 0 id: 10477 unit: get containsVcfFiles() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoPanel.controller.js start line: 88 end line: 90 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10478 unit: get currentProject() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10479 unit: set currentProject() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10480 unit: get projectInfoModeList() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 176 end line: 178 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10481 unit: get currentName() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 180 end line: 182 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10482 unit: get currentMode() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 201 end line: 203 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10483 unit: get noteList() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 205 end line: 207 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10484 unit: get descriptionList() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 209 end line: 211 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10485 unit: get previousMode() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 218 end line: 220 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10486 unit: get currentNote() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 222 end line: 224 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10487 unit: get descriptionAvailable() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 226 end line: 228 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10488 unit: set descriptionAvailable() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 230 end line: 232 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10489 unit: get descriptionIsLoading() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 234 end line: 236 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10490 unit: set descriptionIsLoading() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 238 end line: 240 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10491 unit: get canEdit() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 242 end line: 244 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10492 unit: get isEdit() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 246 end line: 248 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10493 unit: get editingNote() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 250 end line: 252 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10494 unit: get newNote() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 254 end line: 256 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10495 unit: static instance() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo.service.js start line: 273 end line: 275 size: 3 LOC McCabe index: 1 number of parameters: 5 id: 10496 unit: static get UID() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfoEditNote/ngbProjectInfoEditNote.controller.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10497 unit: static get UID() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbProjectSummary/ngbProjectSummary.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10498 unit: datasetContainsMetadata() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbProjectSummary/ngbProjectSummary.controller.js start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10499 unit: isHeatmapSelector() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbProjectSummary/ngbProjectSummary.controller.js start line: 146 end line: 148 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10500 unit: getCustomName() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbProjectSummary/ngbProjectSummary.controller.js start line: 190 end line: 192 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10501 unit: static get UID() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantDensityDiagram/ngbVariantDensityDiagram.controller.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10502 unit: get variants() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantDensityDiagram/ngbVariantDensityDiagram.controller.js start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10503 unit: get isVariantsGroupByChromosomesLoading() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantDensityDiagram/ngbVariantDensityDiagram.controller.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10504 unit: get variantsGroupByChromosomesError() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantDensityDiagram/ngbVariantDensityDiagram.controller.js start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10505 unit: static get UID() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantQualityDiagram/ngbVariantQualityDiagram.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10506 unit: static get UID() file: client/client/app/components/ngbProjectInfoPanel/ngbProjectInfo/ngbVariantTypeDiagram/ngbVariantTypeDiagram.controller.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10507 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetLLM.service.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10508 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbTargetLLM.service.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10509 unit: get models() file: client/client/app/components/ngbTargetPanel/ngbTargetLLM.service.js start line: 21 end line: 23 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10510 unit: get model() file: client/client/app/components/ngbTargetPanel/ngbTargetLLM.service.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10511 unit: get targetTab() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10512 unit: get downloadOptions() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10513 unit: get nameModel() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10514 unit: set nameModel() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10515 unit: get saveStatus() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10516 unit: set saveStatus() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10517 unit: get statusOptions() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10518 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10519 unit: get isIdentificationsMode() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10520 unit: get format() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10521 unit: showIdentificationTab() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 197 end line: 199 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10522 unit: createTargetFromHomologs() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 201 end line: 203 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10523 unit: showTargetsTab() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 212 end line: 214 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10524 unit: controller: function() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 239 end line: 249 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10525 unit: $scope.cancel = function() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.controller.js start line: 246 end line: 248 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10526 unit: get format() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10527 unit: get statusOptions() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10528 unit: get identificationData() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10529 unit: get identificationTarget() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10530 unit: get allChips() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10531 unit: get descriptions() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10532 unit: set saveStatus() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10533 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 10534 unit: resetSaveStatus() file: client/client/app/components/ngbTargetPanel/ngbTargetPanel.service.js start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10535 unit: get mainInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10536 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10537 unit: get diseaseModel() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10538 unit: set diseaseModel() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10539 unit: get searchText() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10540 unit: set searchText() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10541 unit: get diseasesList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10542 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10543 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10544 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10545 unit: get diseasesData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10546 unit: get openedPanels() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10547 unit: get launchLoading() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10548 unit: get launchFailed() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10549 unit: get launchErrorMessageList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10550 unit: refreshInfoBlocks() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10551 unit: refreshError() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.controller.js start line: 156 end line: 158 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10552 unit: get columnList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10553 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10554 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10555 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10556 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10557 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10558 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10559 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10560 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10561 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10562 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10563 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10564 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10565 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10566 unit: set filterInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10567 unit: get drugsResults() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10568 unit: get diseaseName() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 110 end line: 112 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10569 unit: get tmapLoading() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10570 unit: set tmapLoading() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10571 unit: get tmapFailed() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10572 unit: get tmapErrorList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10573 unit: get tmapUrl() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10574 unit: onClickLink() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.controller.js start line: 259 end line: 261 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10575 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10576 unit: get fields() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10577 unit: get filterFields() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10578 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10579 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10580 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10581 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10582 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10583 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10584 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10585 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10586 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10587 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10588 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10589 unit: set filterInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10590 unit: get drugsResults() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10591 unit: get tmapLoading() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10592 unit: set tmapLoading() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10593 unit: get tmapFailed() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10594 unit: get tmapErrorList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10595 unit: get tmapUrl() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10596 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 10597 unit: get diseaseId() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsPanel.service.js start line: 117 end line: 119 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10598 unit: get maxItemsToDisplay() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbFilterList.elements.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10599 unit: get isLoading() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbFilterList.elements.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10600 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10601 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 29 end line: 31 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10602 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTableFilter/ngbDiseasesDrugsTableFilter.controller.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10603 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTablePagination/ngbDiseasesDrugsTablePagination.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10604 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTablePagination/ngbDiseasesDrugsTablePagination.controller.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10605 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTablePagination/ngbDiseasesDrugsTablePagination.controller.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10606 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesDrugsPanel/ngbDiseasesDrugsTablePagination/ngbDiseasesDrugsTablePagination.controller.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10607 unit: get maxItemsToDisplay() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbFilterList.elements.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10608 unit: get isLoading() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbFilterList.elements.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10609 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbDiseasesTargetsFilterList.controller.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10610 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterList/ngbDiseasesTargetsFilterList.controller.js start line: 40 end line: 42 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10611 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsFilterInput/ngbDiseasesTargetsFilterInput.controller.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10612 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsTableFilter/ngbDiseasesTargetsTableFilter.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10613 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbTargetsTableMenu/ngbTargetsTableMenu.controller.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10614 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10615 unit: get fields() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10616 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10617 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10618 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10619 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10620 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10621 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10622 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10623 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10624 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10625 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10626 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10627 unit: set filterInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10628 unit: get targetsResults() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10629 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 10630 unit: get diseaseId() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 95 end line: 97 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10631 unit: setSpeciesFilter() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.service.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10632 unit: get columnList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10633 unit: get defaultSort() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10634 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10635 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10636 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10637 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10638 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10639 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10640 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10641 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10642 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10643 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10644 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10645 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10646 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10647 unit: set filterInfo() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10648 unit: get targetsResults() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10649 unit: get diseaseName() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbDiseasesTargetsPanel.controller.js start line: 126 end line: 128 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10650 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbTargetsTablePagination/ngbTargetsTablePagination.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10651 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbTargetsTablePagination/ngbTargetsTablePagination.controller.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10652 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbTargetsTablePagination/ngbTargetsTablePagination.controller.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10653 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTargetsPanel/ngbTargetsTablePagination/ngbTargetsTablePagination.controller.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10654 unit: get diseaseModel() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10655 unit: set diseaseModel() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10656 unit: get searchText() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10657 unit: set searchText() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10658 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10659 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10660 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10661 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10662 unit: get openedPanels() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10663 unit: get diseasesData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10664 unit: set diseasesData() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10665 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 10666 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbDiseasesTab/ngbDiseasesTab.service.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 10667 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10668 unit: get llmModelType() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 63 end line: 65 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10669 unit: get publications() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10670 unit: get keyWords() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10671 unit: set keyWords() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10672 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10673 unit: get loadingPublications() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10674 unit: get failedPublications() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10675 unit: get publicationsError() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10676 unit: get emptyPublications() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10677 unit: get loadingSummary() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10678 unit: set loadingSummary() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10679 unit: get failedSummary() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10680 unit: get summaryError() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10681 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10682 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10683 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10684 unit: get genes() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 124 end line: 126 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10685 unit: get selectedGeneIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10686 unit: set selectedGeneIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10687 unit: get searchedGeneIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10688 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.controller.js start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10689 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPagination/ngbBibliographyPagination.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10690 unit: get loadingPublications() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPagination/ngbBibliographyPagination.controller.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10691 unit: get totalPublications() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPagination/ngbBibliographyPagination.controller.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10692 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPagination/ngbBibliographyPagination.controller.js start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10693 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPagination/ngbBibliographyPagination.controller.js start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10694 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10695 unit: get loadingPublications() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10696 unit: get failedPublications() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10697 unit: get publicationsError() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10698 unit: get emptyPublications() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10699 unit: get loadingSummary() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10700 unit: set loadingSummary() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10701 unit: get failedSummary() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10702 unit: get summaryError() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10703 unit: get publications() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 60 end line: 62 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10704 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10705 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10706 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10707 unit: get summaryResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10708 unit: get keyWords() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10709 unit: set keyWords() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10710 unit: get totalPublications() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10711 unit: get selectedGeneIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 87 end line: 89 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10712 unit: set selectedGeneIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 90 end line: 92 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10713 unit: get genes() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbBibliographyPanel/ngbBibliographyPanel.service.js start line: 130 end line: 132 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10714 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10715 unit: get llmModels() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 39 end line: 41 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10716 unit: get llmModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 43 end line: 45 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10717 unit: get chatOpened() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10718 unit: get descriptionCollapsed() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10719 unit: get openedPanels() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 61 end line: 63 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10720 unit: set openedPanels() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10721 unit: get identificationData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10722 unit: get identificationTarget() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10723 unit: get interest() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10724 unit: get translational() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10725 unit: get descriptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10726 unit: get mainInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10727 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10728 unit: refreshInfoBlocks() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10729 unit: toggleChat() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 132 end line: 134 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10730 unit: closeChat() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.controller.js start line: 136 end line: 138 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10731 unit: get openedPanels() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.service.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10732 unit: set openedPanels() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.service.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10733 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.service.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10734 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationsTab.service.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10735 unit: get exportSource() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10736 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 10737 unit: get sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10738 unit: get tableLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10739 unit: set tableLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10740 unit: get chartsLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10741 unit: set chartsLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10742 unit: get exportLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10743 unit: set exportLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10744 unit: get geneIdsOfInterest() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10745 unit: get translationalGeneIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.service.js start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10746 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10747 unit: get tableTab() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10748 unit: get bubblesTab() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10749 unit: get graphTab() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10750 unit: get tabs() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 54 end line: 56 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10751 unit: get selectedTab() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10752 unit: set selectedTab() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10753 unit: get chartsVisible() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10754 unit: onChangeTab() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10755 unit: get sources() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10756 unit: set exportLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10757 unit: get geneChips() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10758 unit: getTabName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 123 end line: 125 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10759 unit: getSourceName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesPanel.controller.js start line: 127 end line: 129 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10760 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesGraph/ngbDiseasesGraph.controller.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10761 unit: get highlightedTreeNode() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesGraph/ngbDiseasesGraph.controller.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10762 unit: get selectedGeneId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10763 unit: get identificationTarget() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 65 end line: 67 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10764 unit: get genes() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10765 unit: get error() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10766 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10767 unit: get results() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10768 unit: get diseases() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10769 unit: get dataNotReady() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.service.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10770 unit: get loading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10771 unit: get error() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10772 unit: get dataLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10773 unit: get minScore() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10774 unit: get maxScore() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10775 unit: get scoreStep() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10776 unit: get scoreFilter() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10777 unit: get selectedGeneId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10778 unit: set selectedGeneId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10779 unit: get selectedGene() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10780 unit: get genes() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 99 end line: 101 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10781 unit: cancelResizeRAF() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10782 unit: async sourceChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10783 unit: sliderMouseDown() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesCharts/ngbDiseases.chart.controller.base.js start line: 227 end line: 229 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10784 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesBubbles/ngbDiseasesBubbles.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10785 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseases.controler.base.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10786 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesTableFilter.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10787 unit: get maxItemsToDisplay() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbFilterList.elements.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10788 unit: get isLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbFilterList.elements.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10789 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10790 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterList/ngbDiseasesFilterList.controller.js start line: 34 end line: 36 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10791 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTableFilter/ngbDiseasesFilterInput/ngbDiseasesFilterInput.controller.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10792 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTablePagination/ngbDiseasesTablePagination.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10793 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTablePagination/ngbDiseasesTablePagination.controller.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10794 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTablePagination/ngbDiseasesTablePagination.controller.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10795 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTablePagination/ngbDiseasesTablePagination.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10796 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10797 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10798 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10799 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10800 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10801 unit: set failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10802 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10803 unit: set errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10804 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10805 unit: get diseasesResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10806 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10807 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10808 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10809 unit: set filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10810 unit: get fields() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10811 unit: get filterFieldsList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10812 unit: get identificationTarget() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 150 end line: 152 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10813 unit: get sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10814 unit: get geneIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10815 unit: get targetId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.service.js start line: 162 end line: 164 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10816 unit: get openTargetsColumnList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10817 unit: get pharmGkbColumnList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10818 unit: get ttdColumnList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10819 unit: get displayName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10820 unit: get openTargetsDefaultSort() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10821 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10822 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10823 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10824 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10825 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10826 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10827 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10828 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10829 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10830 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10831 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10832 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 143 end line: 145 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10833 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 146 end line: 148 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10834 unit: set filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10835 unit: get sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 153 end line: 155 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10836 unit: onClickLink() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbDiseasesPanel/ngbDiseasesTable/ngbDiseasesTable.controller.js start line: 330 end line: 332 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 10837 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10838 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 5 id: 10839 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.controller.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10840 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.controller.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10841 unit: get sourceOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.controller.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10842 unit: get sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.controller.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10843 unit: set sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.controller.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10844 unit: get pdbDescriptionLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.controller.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10845 unit: get pdbDescriptionFailed() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.controller.js start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10846 unit: get pdbDescriptionErrorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.controller.js start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10847 unit: get geneChips() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.controller.js start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10848 unit: onChangeSource() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.controller.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10849 unit: get sourceOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10850 unit: get exportSource() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10851 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10852 unit: get proteinDataBankColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10853 unit: get localFilesColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10854 unit: get fields() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10855 unit: get localFilesFilterFields() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10856 unit: get localFilesSortFields() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10857 unit: get localFilesDefaultSort() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10858 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10859 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10860 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10861 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10862 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10863 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 136 end line: 138 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10864 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10865 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10866 unit: get structureResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10867 unit: get sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10868 unit: set sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 152 end line: 154 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10869 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 156 end line: 158 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10870 unit: set filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 159 end line: 161 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10871 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 163 end line: 165 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10872 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 166 end line: 168 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10873 unit: get selectedPdbId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10874 unit: set selectedPdbId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 173 end line: 175 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10875 unit: get selectedPdbReference() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 176 end line: 178 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10876 unit: set selectedPdbReference() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 179 end line: 181 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10877 unit: get pdbDescriptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10878 unit: get pdbDescriptionLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 185 end line: 187 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10879 unit: get pdbDescriptionFailed() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 188 end line: 190 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10880 unit: get pdbDescriptionErrorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 191 end line: 193 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10881 unit: get descriptionDone() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 194 end line: 196 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10882 unit: set descriptionDone() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 197 end line: 199 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10883 unit: get geneIdsOfInterest() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 200 end line: 202 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10884 unit: get translationalGeneIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 203 end line: 205 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10885 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 207 end line: 209 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 10886 unit: get geneIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructurePanel.service.js start line: 217 end line: 219 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10887 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureViewer/ngbStructureViewer.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10888 unit: get descriptionDone() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureViewer/ngbStructureViewer.controller.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10889 unit: get loading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureViewer/ngbStructureViewer.controller.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10890 unit: get pdbDescriptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureViewer/ngbStructureViewer.controller.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10891 unit: get selectedPdbReference() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureViewer/ngbStructureViewer.controller.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10892 unit: loadImage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureViewer/ngbStructureViewer.controller.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10893 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTablePagination/ngbStructureTablePagination.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10894 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTablePagination/ngbStructureTablePagination.controller.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10895 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTablePagination/ngbStructureTablePagination.controller.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10896 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTablePagination/ngbStructureTablePagination.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10897 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTableFilter/ngbStructureTableFilter.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10898 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTableFilter/ngbStructureTableFilter.controller.js start line: 21 end line: 23 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10899 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10900 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10901 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10902 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10903 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10904 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10905 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10906 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10907 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10908 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10909 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10910 unit: set filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10911 unit: set descriptionDone() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10912 unit: get structureResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10913 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10914 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10915 unit: get sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10916 unit: get sourceOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbStructurePanel/ngbStructureTable/ngbStructureTable.controller.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10917 unit: get genomicsTableColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10918 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10919 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10920 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10921 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10922 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10923 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10924 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10925 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10926 unit: set filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10927 unit: get defaultFilter() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTable.controller.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10928 unit: get maxItemsToDisplay() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbFilterList.elements.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10929 unit: get isLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbFilterList.elements.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10930 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10931 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTableFilter/ngbGenomicsTableFilter.controller.js start line: 42 end line: 44 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10932 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTablePagination/ngbGenomicsTablePagination.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10933 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTablePagination/ngbGenomicsTablePagination.controller.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10934 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTablePagination/ngbGenomicsTablePagination.controller.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10935 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsTable/ngbGenomicsTablePagination/ngbGenomicsTablePagination.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10936 unit: get tableColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10937 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10938 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10939 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10940 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10941 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10942 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10943 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10944 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10945 unit: set filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10946 unit: get defaultFilter() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsParasiteTable/ngbGenomicsParasiteTable.controller.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10947 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10948 unit: get exportSource() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10949 unit: get alignment() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10950 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10951 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10952 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10953 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10954 unit: get genomicsData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10955 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10956 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10957 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10958 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10959 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10960 unit: set filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10961 unit: get tableResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 84 end line: 86 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 10962 unit: get genomicsParasiteData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10963 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 10964 unit: get interestTaxIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10965 unit: get geneIdsOfInterest() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10966 unit: get translationalGeneIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10967 unit: getChipByGeneId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.service.js start line: 141 end line: 143 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10968 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsAlignment/ngbGenomicsAlignment.controller.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10969 unit: get alignment() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsAlignment/ngbGenomicsAlignment.controller.js start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10970 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsAlignment/ngbGenomicsAlignment.controller.js start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10971 unit: calculateLength() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsAlignment/ngbGenomicsAlignment.controller.js start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10972 unit: calculateGap() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsAlignment/ngbGenomicsAlignment.controller.js start line: 109 end line: 111 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10973 unit: calculateNumIdentity() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsAlignment/ngbGenomicsAlignment.controller.js start line: 113 end line: 115 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10974 unit: get type() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10975 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10976 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10977 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10978 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10979 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10980 unit: get genesIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 123 end line: 125 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10981 unit: get allSequences() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10982 unit: get isRegistered() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 155 end line: 157 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10983 unit: get isTrackButtonDisabled() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 159 end line: 161 size: 3 LOC McCabe index: 4 number of parameters: 0 id: 10984 unit: get tableResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 163 end line: 165 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10985 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 167 end line: 169 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10986 unit: get targetGeneOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 181 end line: 183 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10987 unit: get queryGeneOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 185 end line: 187 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10988 unit: get alignment() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 189 end line: 191 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10989 unit: get geneChips() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 193 end line: 195 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10990 unit: isProteinOptionDisabled() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 197 end line: 199 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 10991 unit: get targetProteinOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 242 end line: 244 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10992 unit: get queryProteinOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbGenomicsPanel/ngbGenomicsPanel.controller.js start line: 246 end line: 248 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10993 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10994 unit: get initialized() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10995 unit: get pending() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10996 unit: set pending() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10997 unit: get messagePending() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 10998 unit: set messagePending() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 10999 unit: get messages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11000 unit: get error() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.service.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11001 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11002 unit: get loading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.controller.js start line: 37 end line: 39 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11003 unit: get messagePending() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.controller.js start line: 41 end line: 43 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11004 unit: get error() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.controller.js start line: 45 end line: 47 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11005 unit: get messages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.controller.js start line: 49 end line: 51 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11006 unit: $onDestroy() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbIdentificationChat/ngbIdentificationChat.controller.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11007 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.service.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11008 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.service.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11009 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.service.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 11010 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.service.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11011 unit: targetChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.service.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11012 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTablePagination/ngbSequencesTablePagination.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11013 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTablePagination/ngbSequencesTablePagination.controller.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11014 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTablePagination/ngbSequencesTablePagination.controller.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11015 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTablePagination/ngbSequencesTablePagination.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11016 unit: get sequencesTableColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11017 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11018 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11019 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11020 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11021 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11022 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11023 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11024 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11025 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11026 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11027 unit: get selectedGene() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequencesTable.controller.js start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11028 unit: get sequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequenceTableContextMenu/ngbSequenceTableContextMenu.controller.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11029 unit: set sequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequenceTableContextMenu/ngbSequenceTableContextMenu.controller.js start line: 15 end line: 17 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11030 unit: get fieldDb() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequenceTableContextMenu/ngbSequenceTableContextMenu.controller.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11031 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesTable/ngbSequenceTableContextMenu/ngbSequenceTableContextMenu.controller.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11032 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11033 unit: get genes() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 69 end line: 71 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11034 unit: get selectedGeneId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11035 unit: set selectedGeneId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11036 unit: get selectedGene() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11037 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11038 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11039 unit: get sequencesReference() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11040 unit: get isRegistered() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11041 unit: get geneChips() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11042 unit: get includeLocal() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11043 unit: set includeLocal() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11044 unit: get includeAdditionalGenes() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11045 unit: set includeAdditionalGenes() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11046 unit: onChangeSetting() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11047 unit: onChangeGene() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.controller.js start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11048 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11049 unit: get exportSource() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11050 unit: get parasiteType() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11051 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11052 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11053 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11054 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11055 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11056 unit: get genes() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11057 unit: get selectedGeneId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11058 unit: set selectedGeneId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11059 unit: get allSequences() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11060 unit: get sequencesResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11061 unit: get sequencesReference() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11062 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11063 unit: get selectedGene() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11064 unit: get includeLocal() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11065 unit: set includeLocal() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11066 unit: get includeAdditionalGenes() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11067 unit: set includeAdditionalGenes() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11068 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 11069 unit: get genesIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11070 unit: get geneIdsOfInterest() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11071 unit: get translationalGeneIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbSequencesPanel/ngbSequencesPanel.service.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11072 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11073 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.controller.js start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 11074 unit: get loading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.controller.js start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11075 unit: get hasError() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.controller.js start line: 43 end line: 45 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11076 unit: get errors() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.controller.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11077 unit: get search() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.controller.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11078 unit: set search() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.controller.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11079 unit: get searchDisabled() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.controller.js start line: 59 end line: 61 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11080 unit: get page() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.controller.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11081 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.controller.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11082 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.service.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 11083 unit: get loading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.service.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11084 unit: get search() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.service.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11085 unit: set search() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.service.js start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11086 unit: get errors() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.service.js start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11087 unit: get page() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.service.js start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11088 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.service.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11089 unit: get total() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsGeneralTab/ngbPatentsGeneralTab.service.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11090 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSummary/ngbPatentsSummary.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11091 unit: get loading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSummary/ngbPatentsSummary.controller.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11092 unit: get hasError() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSummary/ngbPatentsSummary.controller.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11093 unit: get errors() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSummary/ngbPatentsSummary.controller.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11094 unit: get summary() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSummary/ngbPatentsSummary.controller.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11095 unit: get available() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSummary/ngbPatentsSummary.controller.js start line: 46 end line: 48 size: 3 LOC McCabe index: 5 number of parameters: 0 id: 11096 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbChemicalTablePagination/ngbChemicalTablePagination.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11097 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbChemicalTablePagination/ngbChemicalTablePagination.controller.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11098 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbChemicalTablePagination/ngbChemicalTablePagination.controller.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11099 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbChemicalTablePagination/ngbChemicalTablePagination.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11100 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11101 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11102 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11103 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11104 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11105 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11106 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11107 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11108 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalTable/ngbPatentsChemicalTable.controller.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11109 unit: cellTemplate: require() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11110 unit: cellTemplate: require() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11111 unit: get searchByOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11112 unit: get searchByNames() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11113 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 75 end line: 77 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11114 unit: get drugColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11115 unit: get googlePatentsColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11116 unit: get structureColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11117 unit: get headerText() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11118 unit: get isGooglePatentsSource() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 90 end line: 92 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11119 unit: get summaryCriteria() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 94 end line: 96 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11120 unit: get loadingDrugs() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11121 unit: get failedDrugs() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11122 unit: get errorDrugsMessage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11123 unit: get selectedDrug() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11124 unit: set selectedDrug() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11125 unit: get searchBy() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11126 unit: set searchBy() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11127 unit: get searchStructure() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 143 end line: 145 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11128 unit: set searchStructure() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 146 end line: 148 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11129 unit: get originalStructure() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11130 unit: set originalStructure() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 152 end line: 154 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11131 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 155 end line: 157 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11132 unit: set failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11133 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 161 end line: 163 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11134 unit: set errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 164 end line: 166 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11135 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 167 end line: 169 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11136 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11137 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 173 end line: 175 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11138 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 176 end line: 178 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11139 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 179 end line: 181 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11140 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11141 unit: get tableResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 185 end line: 187 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11142 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 188 end line: 190 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11143 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 191 end line: 193 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11144 unit: get isSearchByDrugName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 195 end line: 197 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11145 unit: get isSearchByDrugStructure() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 198 end line: 200 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11146 unit: get requestModelChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 227 end line: 229 size: 3 LOC McCabe index: 3 number of parameters: 0 id: 11147 unit: get isStructureEmpty() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 231 end line: 233 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11148 unit: get loadingIdentifier() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 242 end line: 244 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11149 unit: set loadingIdentifier() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 245 end line: 247 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11150 unit: get failedIdentifier() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 248 end line: 250 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11151 unit: set failedIdentifier() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 251 end line: 253 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11152 unit: get errorIdentifier() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 254 end line: 256 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11153 unit: set errorIdentifier() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 257 end line: 259 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11154 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 261 end line: 263 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 11155 unit: get geneIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.service.js start line: 277 end line: 279 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11156 unit: get customName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11157 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11158 unit: get loadingDrugs() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11159 unit: get failedDrugs() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11160 unit: get errorDrugsMessage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11161 unit: get drugs() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11162 unit: get selectedDrug() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11163 unit: set selectedDrug() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11164 unit: get searchByOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11165 unit: get searchByNames() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11166 unit: get searchBy() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11167 unit: set searchBy() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11168 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11169 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11170 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11171 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11172 unit: get tableResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11173 unit: get searchDisabled() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11174 unit: get loadingIdentifier() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11175 unit: set loadingIdentifier() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11176 unit: get failedIdentifier() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11177 unit: set failedIdentifier() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11178 unit: get errorIdentifier() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11179 unit: set errorIdentifier() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11180 unit: get searchStructure() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11181 unit: set searchStructure() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11182 unit: get originalStructure() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11183 unit: set originalStructure() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11184 unit: get requestedModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11185 unit: get isGooglePatentsSource() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11186 unit: get summaryCriteria() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11187 unit: onChangeDrug() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11188 unit: onChangeSearchBy() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 157 end line: 159 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11189 unit: onChangeStructure() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsChemicalsTab/ngbPatentsChemicalsTab.controller.js start line: 161 end line: 163 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11190 unit: get patentTabs() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.controller.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11191 unit: get selectedTab() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.controller.js start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11192 unit: set selectedTab() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.controller.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11193 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.controller.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11194 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.controller.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 6 id: 11195 unit: get sourceOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.controller.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11196 unit: get sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.controller.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11197 unit: set sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.controller.js start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11198 unit: onChangeTab() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.controller.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11199 unit: getTabName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.controller.js start line: 77 end line: 79 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11200 unit: get customName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11201 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11202 unit: get requestedModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11203 unit: get headerText() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11204 unit: get loadingProteins() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11205 unit: get proteins() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11206 unit: get selectedProtein() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11207 unit: set selectedProtein() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11208 unit: get searchByOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11209 unit: get searchByNames() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11210 unit: get searchBy() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11211 unit: set searchBy() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11212 unit: get searchSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11213 unit: set searchSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11214 unit: get originalSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11215 unit: set originalSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11216 unit: get searchDisabled() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11217 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11218 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11219 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11220 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11221 unit: get tableResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11222 unit: get loadingSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11223 unit: set loadingSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11224 unit: get failedSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11225 unit: set failedSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11226 unit: get errorSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11227 unit: set errorSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11228 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11229 unit: onChangeSearchBy() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 144 end line: 146 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11230 unit: onChangeSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11231 unit: searchByProteinSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.controller.js start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11232 unit: get searchByOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 75 end line: 77 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11233 unit: get searchByNames() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11234 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11235 unit: get proteinColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11236 unit: get sequenceColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11237 unit: get sequenceDB() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11238 unit: get headerText() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11239 unit: get refreshInterval() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11240 unit: get blastSearchState() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11241 unit: get loadingProteins() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11242 unit: set loadingProteins() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11243 unit: get selectedProtein() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11244 unit: set selectedProtein() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 136 end line: 138 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11245 unit: get searchBy() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11246 unit: set searchBy() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11247 unit: get searchSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11248 unit: set searchSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11249 unit: get originalSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 151 end line: 153 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11250 unit: set originalSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11251 unit: get isSearchByProteinName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 157 end line: 159 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11252 unit: get isSearchByProteinSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11253 unit: get requestModelChanged() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 189 end line: 191 size: 3 LOC McCabe index: 3 number of parameters: 0 id: 11254 unit: get isSequenceEmpty() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 193 end line: 195 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11255 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 204 end line: 206 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11256 unit: set failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 207 end line: 209 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11257 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 210 end line: 212 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11258 unit: set errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 213 end line: 215 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11259 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 216 end line: 218 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11260 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 219 end line: 221 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11261 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 222 end line: 224 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11262 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 225 end line: 227 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11263 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 228 end line: 230 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11264 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 231 end line: 233 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11265 unit: get tableResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 234 end line: 236 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11266 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 237 end line: 239 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11267 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 240 end line: 242 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11268 unit: get loadingSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 244 end line: 246 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11269 unit: set loadingSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 247 end line: 249 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11270 unit: get failedSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 250 end line: 252 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11271 unit: set failedSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 253 end line: 255 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11272 unit: get errorSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 256 end line: 258 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11273 unit: set errorSequence() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsSequencesTab.service.js start line: 259 end line: 261 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11274 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbProteinTablePagination/ngbProteinTablePagination.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11275 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbProteinTablePagination/ngbProteinTablePagination.controller.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11276 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbProteinTablePagination/ngbProteinTablePagination.controller.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11277 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbProteinTablePagination/ngbProteinTablePagination.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11278 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11279 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11280 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11281 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11282 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11283 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11284 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11285 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11286 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsSequencesTab/ngbPatentsProteinTable/ngbPatentsProteinTable.controller.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11287 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.service.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11288 unit: get sourceOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.service.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11289 unit: get sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.service.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11290 unit: resetData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbPatentsPanel/ngbPatentsPanel.service.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11291 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11292 unit: get sourceOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11293 unit: get sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11294 unit: set sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11295 unit: set loading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11296 unit: get geneChips() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11297 unit: get tmapLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11298 unit: set tmapLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11299 unit: get tmapFailed() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11300 unit: get tmapErrorList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11301 unit: get tmapUrl() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11302 unit: onChangeSource() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.controller.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11303 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11304 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11305 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11306 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11307 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11308 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11309 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11310 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11311 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11312 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11313 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11314 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11315 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11316 unit: set filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11317 unit: get sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11318 unit: get sourceOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11319 unit: onClickLink() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.controller.js start line: 296 end line: 298 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11320 unit: get maxItemsToDisplay() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbFilterList.elements.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11321 unit: get isLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbFilterList.elements.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11322 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11323 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11324 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTableFilter/ngbDrugsTableFilter.controller.js start line: 41 end line: 43 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11325 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTablePagination/ngbDrugsTablePagination.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11326 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTablePagination/ngbDrugsTablePagination.controller.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11327 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTablePagination/ngbDrugsTablePagination.controller.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11328 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTablePagination/ngbDrugsTablePagination.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11329 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11330 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11331 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11332 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11333 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11334 unit: set failedResult() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11335 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11336 unit: set errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11337 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11338 unit: get drugsResults() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11339 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11340 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11341 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11342 unit: set filterInfo() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 143 end line: 145 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11343 unit: get fields() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11344 unit: get filterFieldsList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 150 end line: 152 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11345 unit: get openTargetsColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11346 unit: get pharmGkbColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 157 end line: 159 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11347 unit: get dgiDbColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11348 unit: get ttdColumns() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 163 end line: 165 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11349 unit: get displayName() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 166 end line: 168 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11350 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 11351 unit: get sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 179 end line: 181 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11352 unit: get sourceOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 183 end line: 185 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11353 unit: get targetId() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 187 end line: 189 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11354 unit: get geneIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbDrugsTable/ngbDrugsTable.service.js start line: 214 end line: 216 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11355 unit: get exportSource() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11356 unit: get tmapLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11357 unit: set tmapLoading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11358 unit: get tmapFailed() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11359 unit: get tmapErrorList() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11360 unit: get tmapUrl() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11361 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 11362 unit: get sourceOptions() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11363 unit: get sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11364 unit: set sourceModel() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11365 unit: get loading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11366 unit: set loading() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11367 unit: get geneIdsOfInterest() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11368 unit: get translationalGeneIds() file: client/client/app/components/ngbTargetPanel/ngbIdentificationsTab/ngbKnownDrugsPanel/ngbKnownDrugsPanel.service.js start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11369 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbDiseaseContextMenu/ngbDiseaseContextMenu.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11370 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableActions/ngbTargetsTableActions.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11371 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableActions/ngbTargetsTableActions.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11372 unit: get displayFilters() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableActions/ngbTargetsTableActions.controller.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11373 unit: set displayFilters() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableActions/ngbTargetsTableActions.controller.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11374 unit: get adminRole() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetContextMenu.controller.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11375 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetContextMenu.controller.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11376 unit: get isValid() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetAddUserRoleDlg.controller.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11377 unit: clearSearchTerm() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetAddUserRoleDlg.controller.js start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11378 unit: cancel() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetAddUserRoleDlg.controller.js start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11379 unit: close() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetAddUserRoleDlg.controller.js start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11380 unit: get subject() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11381 unit: get subjectPermissions() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11382 unit: set selectedOwner() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11383 unit: get ownerChangeAllowed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11384 unit: get permissionsChangeAllowed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11385 unit: get ownerChanged() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 89 end line: 91 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11386 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11387 unit: clearOwnerSearchTerm() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 355 end line: 357 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11388 unit: close() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.controller.js start line: 421 end line: 423 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11389 unit: get aclClass() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.service.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11390 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.service.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 11391 unit: getRoles() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.service.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11392 unit: grantOwner() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.service.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11393 unit: searchAdGroups() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetContextMenu/ngbTargetPermissionsForm/ngbTargetPermissionsForm.service.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11394 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTablePaginate/ngbTargetsTablePaginate.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11395 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTablePaginate/ngbTargetsTablePaginate.controller.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11396 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTablePaginate/ngbTargetsTablePaginate.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11397 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTablePaginate/ngbTargetsTablePaginate.controller.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11398 unit: function showConfirmDialog() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetSavedIdentificationsDialog/ngbTargetSavedIdentificationsDialog.run.js start line: 193 end line: 210 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11399 unit: $scope.cancel = function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetSavedIdentificationsDialog/ngbTargetSavedIdentificationsDialog.run.js start line: 202 end line: 204 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11400 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11401 unit: set pageSize() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11402 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11403 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11404 unit: get isFirstPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11405 unit: get isLastPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11406 unit: get displayFilters() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11407 unit: set displayFilters() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11408 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11409 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11410 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11411 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11412 unit: get filteringFailure() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11413 unit: get filteringErrorMessageList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11414 unit: static instance() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 11415 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11416 unit: set failedResult() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11417 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11418 unit: set errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11419 unit: get totalCount() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11420 unit: set totalCount() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.service.js start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11421 unit: get targetsTableColumns() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11422 unit: get resizeDelay() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11423 unit: get hideTable() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 41 end line: 43 size: 3 LOC McCabe index: 3 number of parameters: 0 id: 11424 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11425 unit: refreshTable() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11426 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11427 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11428 unit: set pageSize() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11429 unit: get totalCount() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11430 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11431 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11432 unit: get isLastPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11433 unit: get failedResult() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11434 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11435 unit: get displayFilters() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11436 unit: get emptyResults() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11437 unit: get filteringFailure() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11438 unit: get filteringErrorMessageList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11439 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11440 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11441 unit: get loadingData() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11442 unit: set loadingData() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11443 unit: get launchLoading() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11444 unit: get launchFailed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 136 end line: 138 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11445 unit: get launchErrorMessageList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTable.controller.js start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11446 unit: export function createFilterFor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/utilities/autocompleteFunctions.js start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11447 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterInput/ngbTargetsFilterInput.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11448 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterInput/ngbTargetsFilterInput.controller.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11449 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsTableFilter.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11450 unit: get maxItemsToDisplay() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbFilterList.elements.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11451 unit: get isLoading() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbFilterList.elements.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11452 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 13 end line: 15 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11453 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetsTableFilter/ngbTargetsFilterList/ngbTargetsFilterList.controller.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11454 unit: $scope.cancel = function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTable/ngbTargetLaunchDialog/ngbTargetLaunchDialog.run.js start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11455 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11456 unit: refreshTable() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.controller.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11457 unit: get isTableMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.controller.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11458 unit: get isAddMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11459 unit: get isEditMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.controller.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11460 unit: get geneModelProperties() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11461 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11462 unit: get defaultFields() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 66 end line: 68 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11463 unit: get requiredFields() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11464 unit: get additionalGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11465 unit: get ttdTargets() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11466 unit: get writeRoles() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11467 unit: get loading() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11468 unit: set loading() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11469 unit: get failed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11470 unit: set failed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11471 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11472 unit: set errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11473 unit: get updateForce() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11474 unit: set updateForce() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11475 unit: get addedGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11476 unit: set addedGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11477 unit: get removedGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11478 unit: set removedGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 127 end line: 129 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11479 unit: get geneFile() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11480 unit: set geneFile() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11481 unit: get originalModel() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 144 end line: 146 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11482 unit: get isParasite() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 147 end line: 149 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11483 unit: get allFields() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 150 end line: 152 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11484 unit: get isAddMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 191 end line: 193 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11485 unit: get targetType() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 195 end line: 197 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11486 unit: parasiteGenesAdded() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 211 end line: 213 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11487 unit: parasiteGenesRemoved() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.service.js start line: 215 end line: 217 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11488 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11489 unit: get loading() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11490 unit: set loading() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11491 unit: get failed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11492 unit: get errorMessageList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11493 unit: get launchLoading() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11494 unit: get targetModel() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11495 unit: get originalModel() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11496 unit: get isAddMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11497 unit: get isEditMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11498 unit: get updateForce() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11499 unit: set updateForce() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11500 unit: get targetType() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11501 unit: get isParasite() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11502 unit: get targetTypeName() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11503 unit: get geneFile() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11504 unit: set geneFile() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11505 unit: get changeAllowed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 79 end line: 81 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11506 unit: isIdentifyDisabled() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11507 unit: get addedGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 233 end line: 235 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11508 unit: set addedGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 236 end line: 238 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11509 unit: $scope.cancel = function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsForm.controller.js start line: 263 end line: 265 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11510 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterInput/ngbTargetGenesFilterInput.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11511 unit: constructor() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterInput/ngbTargetGenesFilterInput.controller.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 5 id: 11512 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterInput/ngbTargetGenesFilterInput.controller.js start line: 14 end line: 16 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11513 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterInput/ngbTargetGenesFilterInput.controller.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11514 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesTableFilter.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11515 unit: get type() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesTableFilter.controller.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11516 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterRange/ngbTargetGenesFilterRange.controller.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11517 unit: get maxItemsToDisplay() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbFilterList.elements.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11518 unit: get isLoading() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbFilterList.elements.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11519 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11520 unit: $onInit() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11521 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableFilter/ngbTargetGenesFilterList/ngbTargetGenesFilterList.controller.js start line: 37 end line: 39 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11522 unit: get optionsList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11523 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11524 unit: get loading() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11525 unit: set loading() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11526 unit: get targetModel() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11527 unit: get updateForce() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 137 end line: 139 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11528 unit: set updateForce() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11529 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 143 end line: 145 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11530 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 146 end line: 148 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11531 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11532 unit: get tableResults() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 152 end line: 154 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11533 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 155 end line: 157 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11534 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11535 unit: get displayFilters() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 161 end line: 163 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11536 unit: get isParasite() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 164 end line: 166 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11537 unit: get addedGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 167 end line: 169 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11538 unit: set addedGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11539 unit: get additionalGenes() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 173 end line: 175 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11540 unit: get ttdTargets() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 176 end line: 178 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11541 unit: get changeAllowed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 180 end line: 182 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11542 unit: get isLaunchDisabled() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 184 end line: 186 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11543 unit: onSelectGene() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 447 end line: 449 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11544 unit: onChangeGeneName() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 451 end line: 453 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 11545 unit: controller: function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 478 end line: 488 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 11546 unit: $scope.cancel = function() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.controller.js start line: 485 end line: 487 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11547 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableCells/ngbTargetGenesList/ngbTargetGenesList.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11548 unit: refresh() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableCells/ngbTargetGenesList/ngbTargetGenesList.controller.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11549 unit: get changeAllowed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableCells/ngbTargetGenesList/ngbTargetGenesList.controller.js start line: 24 end line: 26 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11550 unit: searchTextChange() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableCells/ngbTargetGenesList/ngbTargetGenesList.controller.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11551 unit: selectedItemChange() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTableCells/ngbTargetGenesList/ngbTargetGenesList.controller.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11552 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbGenesTablePagination/ngbGenesTablePagination.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11553 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbGenesTablePagination/ngbGenesTablePagination.controller.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11554 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbGenesTablePagination/ngbGenesTablePagination.controller.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11555 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbGenesTablePagination/ngbGenesTablePagination.controller.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11556 unit: get displayName() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11557 unit: get columnField() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11558 unit: get removeColumn() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11559 unit: get launchColumn() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11560 unit: get filterType() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11561 unit: get displayFilters() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11562 unit: set displayFilters() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11563 unit: get totalPages() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11564 unit: set totalPages() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11565 unit: get currentPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11566 unit: set currentPage() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11567 unit: get sortInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11568 unit: set sortInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11569 unit: get filterInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11570 unit: get defaultColumns() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11571 unit: get currentColumns() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11572 unit: get columnsInfo() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11573 unit: get isParasiteType() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 200 end line: 202 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11574 unit: get isAddMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 204 end line: 206 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11575 unit: set loading() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 222 end line: 224 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11576 unit: get targetType() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 226 end line: 228 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11577 unit: get targetModel() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 229 end line: 231 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11578 unit: get pageSize() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 233 end line: 235 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11579 unit: resetTableResults() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetGenesTable/ngbTargetGenesTable.service.js start line: 237 end line: 239 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11580 unit: static get UID() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsFormActions/ngbTargetsFormActions.controller.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11581 unit: get displayFilters() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsFormActions/ngbTargetsFormActions.controller.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11582 unit: set displayFilters() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsForm/ngbTargetsFormActions/ngbTargetsFormActions.controller.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11583 unit: get mode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11584 unit: get targetMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11585 unit: set targetMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11586 unit: get isTableMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11587 unit: get isAddMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11588 unit: get isEditMode() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11589 unit: get tableLoading() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11590 unit: set tableLoading() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11591 unit: get tableFailed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11592 unit: set tableFailed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11593 unit: get tableErrorMessageList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11594 unit: set tableErrorMessageList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11595 unit: get launchLoading() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11596 unit: get launchFailed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11597 unit: set launchFailed() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11598 unit: get launchErrorMessageList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11599 unit: set launchErrorMessageList() file: client/client/app/components/ngbTargetPanel/ngbTargetsTab/ngbTargetsTab.service.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11600 unit: static get UID() file: client/client/app/components/ngbVariantPanel/ngbVariantPanel.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11601 unit: close() file: client/client/app/components/ngbVariantPanel/ngbVariantPanel.controller.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11602 unit: static get UID() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearchPanel.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11603 unit: static instance() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.service.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11604 unit: constructor() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.service.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11605 unit: set blatColumns() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.service.js start line: 47 end line: 49 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11606 unit: get columnsWidth() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.service.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11607 unit: set columnsWidth() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.service.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11608 unit: get orderBy() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.service.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11609 unit: set orderBy() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.service.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11610 unit: get readSequence() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.service.js start line: 67 end line: 69 size: 3 LOC McCabe index: 3 number of parameters: 0 id: 11611 unit: get blatRequest() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.service.js start line: 71 end line: 73 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11612 unit: static get UID() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11613 unit: async $onInit() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.controller.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11614 unit: get isReadSelected() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.controller.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11615 unit: onError() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.controller.js start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11616 unit: const mapNameToField = function() file: client/client/app/components/ngbBlatSearchPanel/ngbBlatSearch/ngbBlatSearch.controller.js start line: 193 end line: 195 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11617 unit: get motifsResultsColumns() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11618 unit: get positive() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11619 unit: get negative() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11620 unit: get rowHeight() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11621 unit: get pageSize() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11622 unit: get searchStopOn() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11623 unit: get motifsResultsTitle() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11624 unit: get currentParams() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11625 unit: get searchRequestsHistory() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11626 unit: get filteredErrorMessageList() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11627 unit: get isFilteredSearchFailure() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11628 unit: static get UID() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11629 unit: $onInit() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsTable.controller.js start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11630 unit: get filteredColumns() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilter.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11631 unit: get positiveStrand() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilter.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11632 unit: get negativeStrand() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilter.controller.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11633 unit: static get UID() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilter.controller.js start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11634 unit: get maxItemsToDisplay() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbFilterList.elements.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11635 unit: get isLoading() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbFilterList.elements.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11636 unit: get searchMotifFilter() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbMotifsResultsFilterList.controller.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11637 unit: static get UID() file: client/client/app/components/ngbMotifsPanel/ngbMotifsResultsTable/ngbMotifsResultsFilter/ngbMotifsResultsFilterList/ngbMotifsResultsFilterList.controller.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11638 unit: get motifsParamsColumns() file: client/client/app/components/ngbMotifsPanel/ngbMotifsParamsTable/ngbMotifsParamsTable.controller.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11639 unit: static get UID() file: client/client/app/components/ngbMotifsPanel/ngbMotifsParamsTable/ngbMotifsParamsTable.controller.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11640 unit: $onInit() file: client/client/app/components/ngbMotifsPanel/ngbMotifsParamsTable/ngbMotifsParamsTable.controller.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11641 unit: rowClick() file: client/client/app/components/ngbMotifsPanel/ngbMotifsParamsTable/ngbMotifsParamsTable.controller.js start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11642 unit: static get UID() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11643 unit: constructor() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11644 unit: get isSearchInProgress() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.controller.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11645 unit: get isSearchFailure() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.controller.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11646 unit: get errorMessageList() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.controller.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11647 unit: get isShowParamsTable() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.controller.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11648 unit: get isSearchInProgress() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11649 unit: set isSearchInProgress() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11650 unit: get isSearchFailure() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11651 unit: set isSearchFailure() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11652 unit: get errorMessageList() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11653 unit: set errorMessageList() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11654 unit: get isFilteredSearchFailure() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11655 unit: set isFilteredSearchFailure() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11656 unit: get filteredErrorMessageList() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11657 unit: set filteredErrorMessageList() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11658 unit: get isShowParamsTable() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11659 unit: set isShowParamsTable() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11660 unit: get searchMotifsParams() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11661 unit: get searchStopOn() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11662 unit: set searchStopOn() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11663 unit: get currentParams() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11664 unit: get pageSize() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11665 unit: get rowHeight() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11666 unit: get referenceType() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11667 unit: get chromosomeType() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11668 unit: get wholeGenomeType() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11669 unit: get positiveStrand() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11670 unit: get negativeStrand() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11671 unit: get positive() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11672 unit: get negative() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11673 unit: get searchMotifFilter() file: client/client/app/components/ngbMotifsPanel/ngbMotifsPanel.service.js start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11674 unit: static get UID() file: client/client/app/components/ngbHomologsPanel/ngbHomologsPanel.controller.js start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11675 unit: static get UID() file: client/client/app/components/ngbHomologsPanel/ngbHomologsDomains/ngbHomologsDomains.controller.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11676 unit: close() file: client/client/app/components/ngbHomologsPanel/ngbHomologsDomains/ngbHomologsDomains.controller.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11677 unit: static get UID() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.controller.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11678 unit: $onInit() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.controller.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11679 unit: onError() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.controller.js start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11680 unit: const mapNameToField = function() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.controller.js start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11681 unit: getDataOnPage() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.controller.js start line: 164 end line: 166 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11682 unit: get orthoPara() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.service.js start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11683 unit: getOrthoParaResultById() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.service.js start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11684 unit: getOrthoParaById() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.service.js start line: 40 end line: 42 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11685 unit: get pageError() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.service.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11686 unit: get columnTitleMap() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.service.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11687 unit: get orderByColumns() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.service.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11688 unit: set orthoParaColumns() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.service.js start line: 65 end line: 67 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11689 unit: static instance() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaTable/ngbOrthoParaTable.service.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11690 unit: set orthoParaResultColumns() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResult.service.js start line: 33 end line: 35 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11691 unit: get columnTitleMap() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResult.service.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11692 unit: get typeViewMap() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResult.service.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11693 unit: static instance() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResult.service.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 11694 unit: static get UID() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResultTable/ngbOrthoParaResultTable.controller.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11695 unit: $onInit() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResultTable/ngbOrthoParaResultTable.controller.js start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11696 unit: onError() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResultTable/ngbOrthoParaResultTable.controller.js start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11697 unit: static get UID() file: client/client/app/components/ngbHomologsPanel/ngbOrthoParaResult/ngbOrthoParaResult.controller.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11698 unit: get homologsStates() file: client/client/app/components/ngbHomologsPanel/ngbHomologs.service.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11699 unit: get currentSearch() file: client/client/app/components/ngbHomologsPanel/ngbHomologs.service.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11700 unit: set currentSearch() file: client/client/app/components/ngbHomologsPanel/ngbHomologs.service.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11701 unit: close() file: client/client/app/components/ngbHomologsPanel/ngbHomologsTableContextMenu/ngbHomologsTableContextMenu.controller.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11702 unit: static get UID() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.controller.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11703 unit: $onInit() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.controller.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11704 unit: onError() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.controller.js start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11705 unit: const mapNameToField = function() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.controller.js start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11706 unit: get homologene() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.service.js start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11707 unit: getHomologeneResultById() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.service.js start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11708 unit: getHomologeneById() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.service.js start line: 40 end line: 42 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11709 unit: get pageError() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.service.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11710 unit: get columnTitleMap() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.service.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11711 unit: get orderByColumns() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.service.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11712 unit: set homologeneColumns() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.service.js start line: 66 end line: 68 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11713 unit: static instance() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneTable/ngbHomologeneTable.service.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11714 unit: set homologeneResultColumns() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResult.service.js start line: 38 end line: 40 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11715 unit: get columnTitleMap() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResult.service.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11716 unit: static instance() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResult.service.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11717 unit: static get UID() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResultTable/ngbHomologeneResultTable.controller.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11718 unit: $onInit() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResultTable/ngbHomologeneResultTable.controller.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11719 unit: onError() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResultTable/ngbHomologeneResultTable.controller.js start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11720 unit: static get UID() file: client/client/app/components/ngbHomologsPanel/ngbHomologeneResult/ngbHomologeneResult.controller.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11721 unit: static get UID() file: client/client/app/components/ngbHomologsPanel/ngbHomologsPanelPaginate/ngbHomologsPanelPaginate.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11722 unit: static get UID() file: client/client/app/components/ngbSashimiPlot/ngbSashimiPlot.controller.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11723 unit: trackHash() file: client/client/app/components/ngbSashimiPlot/ngbSashimiPlot.controller.js start line: 184 end line: 186 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11724 unit: controller: function() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksPanel.component.js start line: 2 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11725 unit: this.clearSearch = function() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksPanel.component.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11726 unit: static get UID() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTablePaginate/ngbBookmarksTablePaginate.controller.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11727 unit: static get UID() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.controller.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11728 unit: get isLoading() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbFilterList.elements.js start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11729 unit: getLength() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbFilterList.elements.js start line: 161 end line: 163 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11730 unit: static get UID() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterList/ngbBookmarksFilterList.controller.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11731 unit: static get UID() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksFilterInput/ngbBookmarksFilterInput.controller.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11732 unit: static get UID() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTableFilter/ngbBookmarksTableFilter.controller.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11733 unit: get bookmarksTableColumns() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11734 unit: get bookmarksFilter() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11735 unit: get pageError() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11736 unit: get totalPages() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11737 unit: static instance() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 11738 unit: initEvents() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11739 unit: getBookmarksColumnTitle() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 66 end line: 68 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11740 unit: bookmarksFieldIsFiltered() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11741 unit: canScheduleFilterBookmarks() file: client/client/app/components/ngbBookmarksPanel/ngbBookmarksTable/ngbBookmarksTable.service.js start line: 203 end line: 205 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11742 unit: static get UID() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11743 unit: $onInit() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11744 unit: stop: function() file: client/client/app/components/ngbOrganizeTracks/ngbOrganizeTracks.controller.js start line: 207 end line: 209 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11745 unit: static get UID() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11746 unit: get metadataIsEmpty() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11747 unit: get metadataIsChanged() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11748 unit: get metadata() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11749 unit: get sortedMetadata() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11750 unit: get formHasDuplicates() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11751 unit: closeDialog() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11752 unit: cancelChanges() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11753 unit: removeAttribute() file: client/client/app/components/ngbDataSets/internal/ngbDataSetMetadata/ngbDataSetMetadata.controller.js start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11754 unit: get resourceDownloadAvailable() file: client/client/app/components/ngbDataSets/internal/ngbDataSetContextMenu/ngbDataSetContextMenu.controller.js start line: 26 end line: 28 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11755 unit: getFileLink() file: client/client/app/components/ngbDataSets/internal/ngbDataSetContextMenu/ngbDataSetContextMenu.controller.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11756 unit: export function preprocessNode() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11757 unit: export function treeFilter() file: client/client/app/components/ngbDataSets/internal/utilities.js start line: 342 end line: 344 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11758 unit: constructor() file: client/client/app/components/ngbDataSets/internal/ngbDataSets.node.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11759 unit: get isValid() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbAddUserRoleDlg.controller.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11760 unit: clearSearchTerm() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbAddUserRoleDlg.controller.js start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11761 unit: close() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbAddUserRoleDlg.controller.js start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11762 unit: cancel() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbAddUserRoleDlg.controller.js start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11763 unit: static get UID() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11764 unit: get ownerChangeAllowed() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11765 unit: get permissionsChangeAllowed() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11766 unit: set selectedOwner() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11767 unit: get ownerChanged() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 87 end line: 89 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11768 unit: get subject() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11769 unit: get subjectPermissions() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11770 unit: clearOwnerSearchTerm() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 199 end line: 201 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11771 unit: close() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.controller.js start line: 327 end line: 329 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11772 unit: static instance() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.service.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 11773 unit: getRoles() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.service.js start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11774 unit: searchAdGroups() file: client/client/app/components/ngbDataSets/internal/ngbPermissionsForm/ngbPermissionsForm.service.js start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11775 unit: static get UID() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11776 unit: async $onInit() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11777 unit: get datasetsPlain() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11778 unit: get isLoading() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11779 unit: filter() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 229 end line: 231 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11780 unit: clearSearch() file: client/client/app/components/ngbDataSets/ngbDataSets.controller.js start line: 233 end line: 235 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11781 unit: static instance() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 11782 unit: toggle() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 183 end line: 185 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11783 unit: static search() file: client/client/app/components/ngbDataSets/ngbDataSets.service.js start line: 415 end line: 417 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 11784 unit: static get UID() file: client/client/app/components/ngbVcfSampleAliases/ngbVcfSampleAliases.controller.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11785 unit: get vcfFileId() file: client/client/app/components/ngbVcfSampleAliases/ngbVcfSampleAliases.controller.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11786 unit: get isDisable() file: client/client/app/components/ngbVcfSampleAliases/ngbVcfSampleAliases.controller.js start line: 16 end line: 18 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11787 unit: static get UID() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTablePanel.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11788 unit: constructor() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableDownload/ngbGenesTableDownload.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11789 unit: static get UID() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableDownload/ngbGenesTableDownload.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11790 unit: static get UID() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableDownload/ngbGenesTableDownloadDlg.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11791 unit: close() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableDownload/ngbGenesTableDownloadDlg.controller.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11792 unit: get nextPageMarker() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11793 unit: set nextPageMarker() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11794 unit: get hasMoreData() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11795 unit: get genesPageSize() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11796 unit: get genesTableError() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11797 unit: get orderByGenes() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11798 unit: set orderByGenes() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11799 unit: get nextPagePointer() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11800 unit: get prevPagePointer() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11801 unit: get totalPages() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 104 end line: 106 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11802 unit: get maxVisiblePages() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 108 end line: 110 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11803 unit: get firstPage() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11804 unit: set firstPage() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11805 unit: get lastPage() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11806 unit: set lastPage() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 128 end line: 130 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11807 unit: get lastPageLength() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11808 unit: getPage() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 138 end line: 140 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11809 unit: get genesFilter() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 158 end line: 160 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11810 unit: get genesColumnTitleMap() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 162 end line: 164 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11811 unit: get orderByColumnsGenes() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 166 end line: 168 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11812 unit: get defaultGenesColumns() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11813 unit: get prefixedDefaultGenesColumns() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 174 end line: 176 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11814 unit: get nonAttributeColumns() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 178 end line: 180 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11815 unit: get prefixedNonAttributeColumns() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 182 end line: 184 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11816 unit: get defaultPrefix() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 193 end line: 195 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11817 unit: getColumnOriginalName() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 197 end line: 199 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11818 unit: set genesTableColumns() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 207 end line: 209 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11819 unit: get optionalGenesColumns() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 213 end line: 215 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11820 unit: get geneTypeList() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 217 end line: 219 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11821 unit: static instance() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 227 end line: 229 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 11822 unit: canScheduleFilterGenes() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.service.js start line: 556 end line: 558 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11823 unit: static get UID() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11824 unit: $onInit() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11825 unit: async getDataDown() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 162 end line: 164 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11826 unit: async getDataUp() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 166 end line: 168 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11827 unit: onError() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 255 end line: 257 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11828 unit: const mapNameToField = function() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTable.controller.js start line: 294 end line: 296 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11829 unit: static get UID() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterInput/ngbGenesFilterInput.controller.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11830 unit: get isLoading() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbFilterList.elements.js start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11831 unit: getLength() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbFilterList.elements.js start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11832 unit: static get UID() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbGenesFilterList.controller.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11833 unit: itemIsSelected() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterList/ngbGenesFilterList.controller.js start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11834 unit: static get UID() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesTableFilter.controller.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11835 unit: static get UID() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableFilter/ngbGenesFilterRange/ngbGenesFilterRange.controller.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11836 unit: close() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableContextMenu/ngbGenesTableContextMenu.controller.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11837 unit: static get UID() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableColumn/ngbGenesTableColumn.controller.js start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11838 unit: $onInit() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableColumn/ngbGenesTableColumn.controller.js start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11839 unit: updateDisplayGenesFilterValue() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableColumn/ngbGenesTableColumn.controller.js start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11840 unit: onDisplayGenesFilterChange() file: client/client/app/components/ngbGenesTablePanel/ngbGenesTable/ngbGenesTableColumn/ngbGenesTableColumn.controller.js start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11841 unit: static get UID() file: client/client/app/components/ngbMolecularViewer/ngbMolecularViewer.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11842 unit: loadImage() file: client/client/app/components/ngbMolecularViewer/ngbMolecularViewer.controller.js start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11843 unit: static get UID() file: client/client/app/components/ngbMolecularViewer/ngbPdbDescription/ngbPdbDescription.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11844 unit: static get UID() file: client/client/app/components/ngbMolecularViewer/ngbMiew/ngbMiew.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11845 unit: static instance() file: client/client/app/components/ngbMolecularViewer/ngbMolecularViewer.service.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 11846 unit: async loadPdbDescription() file: client/client/app/components/ngbMolecularViewer/ngbMolecularViewer.service.js start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11847 unit: static get UID() file: client/client/app/components/ngbGenomeAnnotations/ngbGenomeAnnotations.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11848 unit: getCustomName() file: client/client/app/components/ngbGenomeAnnotations/ngbGenomeAnnotations.controller.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11849 unit: static get UID() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsLoadingIndicator/ngbVariantsLoadingIndicator.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11850 unit: static get UID() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterInput/ngbVariantsFilterInput.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11851 unit: static get UID() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterList/ngbVariantsFilterList.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11852 unit: itemIsSelected() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterList/ngbVariantsFilterList.controller.js start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11853 unit: static get UID() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterCheckbox/ngbVariantsFilterCheckbox.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11854 unit: static get UID() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsFilterRange/ngbVariantsFilterRange.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11855 unit: static get UID() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTableFilter/ngbVariantsTableFilter.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11856 unit: static get UID() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11857 unit: $onInit() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11858 unit: globalSettingsChangedHandler() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11859 unit: get isProjectSelected() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11860 unit: onError() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.controller.js start line: 150 end line: 152 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11861 unit: static instance() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.service.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 5 id: 11862 unit: constructor() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTable/ngbVariantsTable.service.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 5 id: 11863 unit: static get UID() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTablePaginate/ngbVariantsTablePaginate.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11864 unit: constructor() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableDownload/ngbVariantsTableDownload.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11865 unit: static get UID() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableDownload/ngbVariantsTableDownload.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11866 unit: static get UID() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableDownload/ngbVariantsTableDownloadDlg.controller.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11867 unit: close() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableDownload/ngbVariantsTableDownloadDlg.controller.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11868 unit: static get UID() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTablePanel.controller.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11869 unit: static get UID() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableColumn/ngbVariantsTableColumn.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11870 unit: $onInit() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableColumn/ngbVariantsTableColumn.controller.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11871 unit: updateDisplayVariantsFilterValue() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableColumn/ngbVariantsTableColumn.controller.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11872 unit: onDisplayVariantsFilterChange() file: client/client/app/components/ngbVariantsTablePanel/ngbVariantsTableColumn/ngbVariantsTableColumn.controller.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11873 unit: get pageSize() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11874 unit: get errorMessageList() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11875 unit: get emptyResults() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11876 unit: get totalCount() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11877 unit: get currentPages() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11878 unit: get sortInfo() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11879 unit: set sortInfo() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11880 unit: get filterInfo() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11881 unit: get currentCoverageIndex() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11882 unit: set currentCoverageIndex() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11883 unit: get isFilteredSearchFailure() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11884 unit: get filteredErrorMessageList() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11885 unit: get displayFilters() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11886 unit: set displayFilters() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.service.js start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11887 unit: static get UID() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageTableFilters.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11888 unit: get filterInfo() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterRange/ngbCoverageFilterRange.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11889 unit: static get UID() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterRange/ngbCoverageFilterRange.controller.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11890 unit: get maxItemsToDisplay() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbFilterList.elements.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11891 unit: get isLoading() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbFilterList.elements.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11892 unit: static get UID() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbCoverageFilterList.controller.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11893 unit: get filterInfo() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableFilters/ngbCoverageFilterList/ngbCoverageFilterList.controller.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11894 unit: get coverageTableColumns() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.service.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11895 unit: static instance() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.service.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11896 unit: constructor() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.service.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11897 unit: get sortInfo() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.service.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11898 unit: set sortInfo() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.service.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11899 unit: get rowHeight() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11900 unit: static get UID() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11901 unit: get isLastPage() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11902 unit: get emptyResults() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11903 unit: get pageSize() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11904 unit: get totalCount() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11905 unit: get currentPages() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11906 unit: get currentCoverageIndex() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11907 unit: get sortInfo() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11908 unit: set sortInfo() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11909 unit: get displayFilters() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11910 unit: set displayFilters() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11911 unit: get isFilteredSearchFailure() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11912 unit: get filteredErrorMessageList() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11913 unit: $onInit() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTable.controller.js start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11914 unit: static get UID() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableActions/ngbCoverageTableActions.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11915 unit: get displayFilters() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableActions/ngbCoverageTableActions.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11916 unit: set displayFilters() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableActions/ngbCoverageTableActions.controller.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11917 unit: constructor() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableActions/ngbCoverageTableActions.controller.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 11918 unit: onClickRestoreView() file: client/client/app/components/ngbCoveragePanel/ngbCoverageTable/ngbCoverageTableActions/ngbCoverageTableActions.controller.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11919 unit: get coverageIndexes() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11920 unit: static get UID() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11921 unit: $onDestroy() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11922 unit: $onInit() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11923 unit: get errorMessageList() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11924 unit: get coverageSearchResults() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11925 unit: get currentCoverageIndex() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11926 unit: set currentCoverageIndex() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11927 unit: get currentBamId() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11928 unit: set currentBamId() file: client/client/app/components/ngbCoveragePanel/ngbCoveragePanel.controller.js start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11929 unit: static get UID() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/ngbBlastSearchForm.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11930 unit: clearOrganisms() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/ngbBlastSearchForm.controller.js start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11931 unit: filterDBList() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/ngbBlastSearchForm.controller.js start line: 174 end line: 176 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11932 unit: static get UID() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchFormPanel/ngbBlastAdditionalParams/ngbBlastAdditionalParams.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11933 unit: static get UID() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistory.controller.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11934 unit: $onInit() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistory.controller.js start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11935 unit: onError() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistory.controller.js start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11936 unit: const mapNameToField = function() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistory.controller.js start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11937 unit: static instance() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11938 unit: get firstPageHistory() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11939 unit: set firstPageHistory() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11940 unit: get totalPages() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11941 unit: get blastSearchState() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11942 unit: get historyColumnTitleMap() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11943 unit: get currentPageHistory() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11944 unit: set currentPageHistory() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11945 unit: get historyPageSize() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11946 unit: set historyPageSize() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11947 unit: get refreshInterval() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11948 unit: get historyPageError() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11949 unit: get orderByHistory() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11950 unit: set orderByHistory() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 99 end line: 101 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11951 unit: get orderByColumnsHistory() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11952 unit: get blastHistory() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11953 unit: async updateSearchHistory() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11954 unit: downloadResults() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11955 unit: set blastHistoryColumns() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastHistory/ngbBlastHistoryTable.service.js start line: 286 end line: 288 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11956 unit: get totalPagesCountHistory() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11957 unit: set totalPagesCountHistory() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11958 unit: get blastStates() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11959 unit: async getBlastDBList() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11960 unit: set currentSearchId() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 229 end line: 231 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11961 unit: get currentResultId() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 233 end line: 235 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11962 unit: set currentResultId() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 237 end line: 239 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11963 unit: get currentTool() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 241 end line: 243 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11964 unit: set currentTool() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 245 end line: 247 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11965 unit: set isEmptyResults() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 249 end line: 251 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11966 unit: get canDownload() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 253 end line: 255 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 11967 unit: get cutCurrentResult() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 257 end line: 259 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11968 unit: get isRepeat() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 261 end line: 263 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11969 unit: set isRepeat() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 265 end line: 267 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11970 unit: setCurrentAlignmentObject() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.service.js start line: 298 end line: 300 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11971 unit: static get UID() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResult.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11972 unit: static instance() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.service.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11973 unit: constructor() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.service.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11974 unit: set blastSearchResultColumns() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.service.js start line: 26 end line: 28 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 11975 unit: get searchResultTableError() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.service.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11976 unit: get blastSearchResult() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.service.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11977 unit: async updateSearchResult() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.service.js start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11978 unit: static get UID() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11979 unit: $onInit() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.controller.js start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11980 unit: onError() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchResult/ngbBlastSearchResultTable/ngbBlastSearchResultTable.controller.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11981 unit: static get UID() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanelPaginate/ngbBlastSearchPanelPaginate.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11982 unit: static get UID() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastWholeGenomeView/ngbBlastWholeGenomeView.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11983 unit: get genomeRenderer() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastWholeGenomeView/ngbBlastWholeGenomeView.controller.js start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11984 unit: get genomeRendererDiv() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastWholeGenomeView/ngbBlastWholeGenomeView.controller.js start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11985 unit: getMaxChromosomeSize() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastWholeGenomeView/ngbBlastWholeGenomeView.controller.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 11986 unit: displayErrorMessage() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastWholeGenomeView/ngbBlastWholeGenomeView.controller.js start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11987 unit: static get UID() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchPanel.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11988 unit: static get UID() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignmentList.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11989 unit: navigationToChromosomeAvailable() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignmentList.controller.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11990 unit: static instance() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.service.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 11991 unit: setAlignments() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.service.js start line: 14 end line: 16 size: 3 LOC McCabe index: 3 number of parameters: 3 id: 11992 unit: static get UID() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11993 unit: $onInit() file: client/client/app/components/ngbBlastSearchPanel/ngbBlastSearchAlignmentList/ngbBlastSearchAlignment/ngbBlastSearchAlignment.controller.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11994 unit: static get UID() file: client/client/app/components/ngbTracksView/ngbTrackActions/ngbTrackActions.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11995 unit: static get UID() file: client/client/app/components/ngbTracksView/ngbBrowserToolbarPanel/ngbBrowserToolbarPanel.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11996 unit: constructor() file: client/client/app/components/ngbTracksView/ngbBrowserToolbarPanel/ngbBrowserToolbarPanel.controller.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 11997 unit: zoomIn() file: client/client/app/components/ngbTracksView/ngbBrowserToolbarPanel/ngbBrowserToolbarPanel.controller.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11998 unit: zoomOut() file: client/client/app/components/ngbTracksView/ngbBrowserToolbarPanel/ngbBrowserToolbarPanel.controller.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 11999 unit: get canZoom() file: client/client/app/components/ngbTracksView/ngbBrowserToolbarPanel/ngbBrowserToolbarPanel.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12000 unit: saveBrowserView() file: client/client/app/components/ngbTracksView/ngbBrowserToolbarPanel/ngbBrowserToolbarPanel.controller.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12001 unit: _getCanvasWidth() file: client/client/app/components/ngbTracksView/managers/ngbTracksView.camera.manager.js start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12002 unit: constructor() file: client/client/app/components/ngbTracksView/managers/ngbTracksView.zoom.manager.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12003 unit: get canZoom() file: client/client/app/components/ngbTracksView/managers/ngbTracksView.zoom.manager.js start line: 11 end line: 13 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12004 unit: static get UID() file: client/client/app/components/ngbTracksView/ngbTracksView.controller.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12005 unit: get selectedTracksMenuIsVisible() file: client/client/app/components/ngbTracksView/ngbTracksView.controller.js start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12006 unit: static get UID() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbBedColorPreference/ngbBedColorPreference.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12007 unit: convertHexToDecimal() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbBedColorPreference/ngbBedColorPreference.controller.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12008 unit: close() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbBedColorPreference/ngbBedColorPreference.controller.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12009 unit: resetToDefaults() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbBedColorPreference/ngbBedColorPreference.controller.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12010 unit: static get UID() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackCoverageSettings/ngbTrackCoverageSettings.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12011 unit: static get UID() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbMotifsColorPreference/ngbMotifsColorPreference.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12012 unit: convertHexToDecimal() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbMotifsColorPreference/ngbMotifsColorPreference.controller.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12013 unit: close() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbMotifsColorPreference/ngbMotifsColorPreference.controller.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12014 unit: resetToDefaults() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbMotifsColorPreference/ngbMotifsColorPreference.controller.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12015 unit: static get UID() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackSettings.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12016 unit: get hiddenSettings() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackSettings.controller.js start line: 98 end line: 100 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12017 unit: $scope.close = function() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbHeatmapColorSchemePreference/ngbHeatmapColorSchemePreference.run.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12018 unit: static get UID() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbWigColorPreference/ngbWigColorPreference.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12019 unit: convertHexToDecimal() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbWigColorPreference/ngbWigColorPreference.controller.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12020 unit: close() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbWigColorPreference/ngbWigColorPreference.controller.js start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12021 unit: resetToDefaults() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbWigColorPreference/ngbWigColorPreference.controller.js start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12022 unit: static get UID() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackFontSize/ngbTrackFontSize.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12023 unit: get settingsChanged() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackFontSize/ngbTrackFontSize.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 3 number of parameters: 0 id: 12024 unit: get canApplyDefaults() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackFontSize/ngbTrackFontSize.controller.js start line: 31 end line: 33 size: 3 LOC McCabe index: 3 number of parameters: 0 id: 12025 unit: set fontSize() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackFontSize/ngbTrackFontSize.controller.js start line: 42 end line: 44 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12026 unit: close() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackFontSize/ngbTrackFontSize.controller.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12027 unit: resetToDefaults() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackFontSize/ngbTrackFontSize.controller.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12028 unit: static get UID() file: client/client/app/components/ngbTracksView/ngbTrackSettings/ngbTrackResizePreference/ngbTrackResizePreference.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12029 unit: static get UID() file: client/client/app/components/ngbTracksView/ngbTrackNotification/ngbTrackNotification.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12030 unit: get isGeneHistogramNotification() file: client/client/app/components/ngbTracksView/ngbTrackNotification/ngbTrackNotification.controller.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12031 unit: get isBLASTPNotification() file: client/client/app/components/ngbTracksView/ngbTrackNotification/ngbTrackNotification.controller.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12032 unit: static get UID() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12033 unit: get height() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 33 end line: 35 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12034 unit: get customName() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 309 end line: 311 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12035 unit: get showFileNameHint() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 313 end line: 315 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12036 unit: showTrackNameInput() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 350 end line: 352 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12037 unit: hideTrackNameInput() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 354 end line: 356 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12038 unit: get trackIsVisible() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 383 end line: 385 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12039 unit: onMinifiedHeaderMouseOver() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.controller.js start line: 550 end line: 552 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12040 unit: static configureCopyToClipboardElements() file: client/client/app/components/ngbTracksView/ngbTrack/ngbTrack.events.js start line: 511 end line: 513 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12041 unit: export default() file: client/client/app/components/ngbTracksView/ngbTrack/ngbResizePanel.directive.js start line: 1 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12042 unit: static get UID() file: client/client/app/components/ngbTracksView/ngbRulerTrack/ngbTrack.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12043 unit: static get UID() file: client/client/app/components/ngbTracksView/ngbTracksSelectionMenu/ngbTracksSelectionMenu.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12044 unit: get isVisible() file: client/client/app/components/ngbTracksView/ngbTracksSelectionMenu/ngbTracksSelectionMenu.controller.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12045 unit: get allSelected() file: client/client/app/components/ngbTracksView/ngbTracksSelectionMenu/ngbTracksSelectionMenu.controller.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12046 unit: selectAll() file: client/client/app/components/ngbTracksView/ngbTracksSelectionMenu/ngbTracksSelectionMenu.controller.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12047 unit: clearSelection() file: client/client/app/components/ngbTracksView/ngbTracksSelectionMenu/ngbTracksSelectionMenu.controller.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12048 unit: get selectedTracks() file: client/client/app/components/ngbTracksView/ngbTracksSelectionMenu/ngbTracksSelectionMenu.controller.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12049 unit: getTracksByType() file: client/client/app/components/ngbTracksView/ngbTracksSelectionMenu/ngbTracksSelectionMenu.controller.js start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12050 unit: static instance() file: client/client/app/components/ngbLog/ngbLog.service.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12051 unit: constructor() file: client/client/app/components/ngbLog/ngbLog.service.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12052 unit: writeToLog() file: client/client/app/components/ngbLog/ngbLog.service.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12053 unit: get logMessage() file: client/client/app/components/ngbLog/ngbLog.service.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12054 unit: static get UID() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12055 unit: get vcfFileInfoItem() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12056 unit: get vcfPending() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 181 end line: 183 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12057 unit: get vcfError() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 185 end line: 187 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12058 unit: get heatmapsFromTrack() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 189 end line: 191 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12059 unit: get heatmapsFromAnnotations() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.controller.js start line: 193 end line: 195 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12060 unit: get annotationFileHeaderList() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.service.js start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12061 unit: get annotationTypeList() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.service.js start line: 130 end line: 132 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12062 unit: getSessionAnnotationList() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.service.js start line: 134 end line: 136 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12063 unit: getPathwayAnnotationList() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotation/ngbPathwaysAnnotation.service.js start line: 138 end line: 140 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12064 unit: static get UID() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotationDlg/ngbPathwaysAnnotationAddDlg.controller.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12065 unit: close() file: client/client/app/components/ngbPathways/ngbPathwaysAnnotationDlg/ngbPathwaysAnnotationAddDlg.controller.js start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12066 unit: static get UID() file: client/client/app/components/ngbPathways/ngbPathwaysPanel.controller.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12067 unit: static get UID() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.controller.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12068 unit: static instance() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.service.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 12069 unit: get localStorageKey() file: client/client/app/components/ngbPathways/ngbInternalPathwaysResult/ngbInternalPathwaysResult.service.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12070 unit: static get UID() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.controller.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12071 unit: $onInit() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.controller.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12072 unit: onError() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.controller.js start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12073 unit: const mapNameToField = function() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.controller.js start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12074 unit: static get UID() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysTableFilter.controller.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12075 unit: get isLoading() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysFilterList/ngbFilterList.elements.js start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12076 unit: getLength() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysFilterList/ngbFilterList.elements.js start line: 149 end line: 151 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12077 unit: static get UID() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysFilterList/ngbInternalPathwaysFilterList.controller.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12078 unit: itemIsSelected() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTableFilter/ngbInternalPathwaysFilterList/ngbInternalPathwaysFilterList.controller.js start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12079 unit: get internalPathways() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12080 unit: get pageError() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12081 unit: get isInitialized() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12082 unit: get columnTitleMap() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12083 unit: get orderByColumns() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12084 unit: get internalPathwaysFilter() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12085 unit: set internalPathwaysColumns() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 76 end line: 78 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12086 unit: get speciesList() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 93 end line: 95 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12087 unit: set speciesList() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 97 end line: 99 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12088 unit: static instance() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12089 unit: internalPathwaysFieldIsFiltered() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 238 end line: 240 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12090 unit: canScheduleFilterInternalPathways() file: client/client/app/components/ngbPathways/ngbInternalPathwaysTable/ngbInternalPathwaysTable.service.js start line: 247 end line: 249 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12091 unit: get currentSearch() file: client/client/app/components/ngbPathways/ngbPathways.service.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12092 unit: set currentSearch() file: client/client/app/components/ngbPathways/ngbPathways.service.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12093 unit: get pathwaysStates() file: client/client/app/components/ngbPathways/ngbPathways.service.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12094 unit: get currentInternalPathway() file: client/client/app/components/ngbPathways/ngbPathways.service.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12095 unit: get currentState() file: client/client/app/components/ngbPathways/ngbPathways.service.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12096 unit: report() file: client/client/app/components/ngbPathways/ngbPathways.service.js start line: 138 end line: 140 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12097 unit: static instance() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbInternalPathwayNode.service.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12098 unit: constructor() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbInternalPathwayNode.service.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12099 unit: clearAnnotations() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbInternalPathwayNode.service.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12100 unit: static instance() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbPathwayAnnotationMark/ngbPathwayAnnotationMark.service.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12101 unit: static get UID() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbPathwayAnnotationMark/ngbPathwayAnnotationMark.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12102 unit: get collapsed() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbPathwayAnnotationMark/ngbPathwayAnnotationMark.controller.js start line: 15 end line: 17 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12103 unit: get visible() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbPathwayAnnotationMark/ngbPathwayAnnotationMark.controller.js start line: 19 end line: 21 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12104 unit: get showBackground() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbPathwayAnnotationMark/ngbPathwayAnnotationMark.controller.js start line: 23 end line: 25 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12105 unit: static get UID() file: client/client/app/components/ngbPathways/ngbInternalPathwayNode/ngbInternalPathwayNode.controller.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12106 unit: static get UID() file: client/client/app/components/ngbPathways/ngbPathwaysColorSchemePreference/ngbPathwaysColorSchemePreference.controller.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12107 unit: function removeLineBreaks() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12108 unit: static get UID() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 141 end line: 143 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12109 unit: isCollage() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 417 end line: 419 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12110 unit: setStyleToNode() file: client/client/app/components/ngbPathways/ngbCytoscapePathway/ngbCytoscapePathway.controller.js start line: 550 end line: 552 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12111 unit: static get UID() file: client/client/app/components/ngbPathways/ngbPathwaysPanelPaginate/ngbPathwaysPanelPaginate.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12112 unit: static get UID() file: client/client/app/components/ngbStrainLineage/ngbStrainLineageNode/ngbStrainLineageNode.controller.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12113 unit: get selectedTreeId() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12114 unit: get localStorageKey() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12115 unit: static instance() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12116 unit: getCurrentStrainLineageAsList() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 183 end line: 185 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12117 unit: loadState() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.service.js start line: 269 end line: 271 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12118 unit: static get UID() file: client/client/app/components/ngbStrainLineage/ngbCytoscape/ngbCytoscape.controller.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12119 unit: static get UID() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.controller.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12120 unit: resetDataTooltip() file: client/client/app/components/ngbStrainLineage/ngbStrainLineage.controller.js start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12121 unit: static get UID() file: client/client/app/components/ngbTracksSelection/ngbTracksSelection.controller.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12122 unit: get tracks() file: client/client/app/components/ngbTracksSelection/ngbTracksSelection.controller.js start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12123 unit: get allSelected() file: client/client/app/components/ngbTracksSelection/ngbTracksSelection.controller.js start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12124 unit: selectAll() file: client/client/app/components/ngbTracksSelection/ngbTracksSelection.controller.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12125 unit: clearSelection() file: client/client/app/components/ngbTracksSelection/ngbTracksSelection.controller.js start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12126 unit: getCustomName() file: client/client/app/components/ngbTracksSelection/ngbTracksSelection.controller.js start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12127 unit: trackHash() file: client/client/app/components/ngbTracksSelection/ngbTracksSelection.controller.js start line: 133 end line: 135 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12128 unit: static get UID() file: client/client/app/components/ngbBrowser/ngbBrowser.controller.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12129 unit: get homeUrl() file: client/client/app/components/ngbBrowser/ngbBrowser.controller.js start line: 25 end line: 27 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12130 unit: browserHomePageUrl() file: client/client/app/components/ngbBrowser/ngbBrowser.controller.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12131 unit: homeUrlIsMd() file: client/client/app/components/ngbBrowser/ngbBrowser.controller.js start line: 54 end line: 56 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12132 unit: static instance() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfo.service.js start line: 4 end line: 6 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 12133 unit: constructor() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfo.service.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 12134 unit: static get UID() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoHistory/ngbFeatureInfoHistory.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12135 unit: constructor() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoHistory/ngbFeatureInfoHistory.controller.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12136 unit: get historyData() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoHistory/ngbFeatureInfoHistory.controller.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12137 unit: get isHistoryLoading() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoHistory/ngbFeatureInfoHistory.controller.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12138 unit: get errorHistory() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoHistory/ngbFeatureInfoHistory.controller.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12139 unit: static get UID() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoMain/ngbFeatureInfoMain.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12140 unit: scrollTo() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoMain/ngbFeatureInfoMain.controller.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12141 unit: get editMode() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoMain/ngbFeatureInfoMain.controller.js start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12142 unit: get disableSave() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoMain/ngbFeatureInfoMain.controller.js start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12143 unit: get saveError() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoMain/ngbFeatureInfoMain.controller.js start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12144 unit: get saveInProgress() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoMain/ngbFeatureInfoMain.controller.js start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12145 unit: get isGeneralInfoOpen() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoMain/ngbFeatureInfoMain.controller.js start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12146 unit: set isGeneralInfoOpen() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfoMain/ngbFeatureInfoMain.controller.js start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12147 unit: static get UID() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfo.controller.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12148 unit: _onError() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbFeatureInfo.controller.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12149 unit: static get UID() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbInfoRows/ngbInfoRows.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12150 unit: constructor() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbInfoRows/ngbInfoRows.controller.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 12151 unit: get attributes() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbInfoRows/ngbInfoRows.controller.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12152 unit: get disableAddButton() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfo/ngbInfoRows/ngbInfoRows.controller.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12153 unit: static get UID() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.controller.js start line: 3 end line: 5 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12154 unit: get shouldDisplayGeneInfo() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.controller.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12155 unit: constructor() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.controller.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 12156 unit: selectTab() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.controller.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12157 unit: function sortProperties() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.run.js start line: 1 end line: 3 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 12158 unit: export default function run() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.run.js start line: 21 end line: 130 size: 3 LOC McCabe index: 6 number of parameters: 4 id: 12159 unit: $scope.no = function() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.run.js start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12160 unit: $scope.close = function() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.run.js start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12161 unit: static instance() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12162 unit: constructor() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12163 unit: get editMode() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12164 unit: set editMode() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12165 unit: get newAttributes() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12166 unit: get saveError() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12167 unit: set saveError() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12168 unit: get historyError() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12169 unit: set historyError() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12170 unit: get historyData() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12171 unit: set historyData() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12172 unit: get saveInProgress() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12173 unit: set saveInProgress() file: client/client/app/components/ngbFeatureInfoPanel/ngbFeatureInfoPanel.service.js start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12174 unit: static get UID() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12175 unit: get loading() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 51 end line: 53 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12176 unit: get heatmaps() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 55 end line: 57 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12177 unit: get heatmapsFromTrack() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12178 unit: get heatmapsFromAnnotations() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12179 unit: get heatmap() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12180 unit: onHeatmapNavigation() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12181 unit: onSessionLoad() file: client/client/app/components/ngbHeatmapPanel/ngbHeatmapPanel.controller.js start line: 132 end line: 134 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12182 unit: get actions() file: client/client/modules/render/core/track/track.js start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12183 unit: get trackIsResizable() file: client/client/modules/render/core/track/track.js start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12184 unit: get trackIsHidden() file: client/client/modules/render/core/track/track.js start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12185 unit: get error() file: client/client/modules/render/core/track/track.js start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12186 unit: requestRender() file: client/client/modules/render/core/track/track.js start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12187 unit: getTrackStatePayload() file: client/client/modules/render/core/track/track.js start line: 205 end line: 207 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12188 unit: _getCurrentSize() file: client/client/modules/render/core/track/track.js start line: 227 end line: 229 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12189 unit: requestRenderRefresh() file: client/client/modules/render/core/track/track.js start line: 238 end line: 240 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12190 unit: updateScene() file: client/client/modules/render/core/track/track.js start line: 242 end line: 244 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12191 unit: get height() file: client/client/modules/render/core/track/track.js start line: 395 end line: 397 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12192 unit: get isResizing() file: client/client/modules/render/core/track/track.js start line: 399 end line: 401 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12193 unit: get trackHasCoverageSubTrack() file: client/client/modules/render/core/track/track.js start line: 445 end line: 447 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12194 unit: get settings() file: client/client/modules/render/core/track/track.js start line: 503 end line: 505 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12195 unit: render() file: client/client/modules/render/core/track/track.js start line: 515 end line: 517 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12196 unit: animate() file: client/client/modules/render/core/track/track.js start line: 519 end line: 521 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12197 unit: setContent() file: client/client/modules/render/core/track/tooltip.js start line: 86 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12198 unit: const mapLine = function() file: client/client/modules/render/core/track/tooltip.js start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12199 unit: onMouseOut() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 190 end line: 192 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12200 unit: onHover() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 217 end line: 219 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12201 unit: onClick() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 221 end line: 223 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12202 unit: onScroll() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 225 end line: 227 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12203 unit: canScroll() file: client/client/modules/render/core/track/interactiveTrack/interactiveTrack.js start line: 287 end line: 289 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12204 unit: constructor() file: client/client/modules/render/core/track/scrollableTrack/scrollableTrack.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12205 unit: isScrollable() file: client/client/modules/render/core/track/scrollableTrack/scrollableTrack.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12206 unit: scrollIndicatorBoundaries() file: client/client/modules/render/core/track/scrollableTrack/scrollableTrack.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12207 unit: hoverVerticalScroll() file: client/client/modules/render/core/track/scrollableTrack/scrollableTrack.js start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12208 unit: unhoverVerticalScroll() file: client/client/modules/render/core/track/scrollableTrack/scrollableTrack.js start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12209 unit: get stateKeys() file: client/client/modules/render/core/track/baseTrack.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12210 unit: value: getTrackConfigFn() file: client/client/modules/render/core/track/baseTrack.js start line: 37 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12211 unit: get config() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRendererWIthVerticalScroll.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12212 unit: get verticalScroll() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRendererWIthVerticalScroll.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12213 unit: get height() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRendererWIthVerticalScroll.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12214 unit: set height() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRendererWIthVerticalScroll.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12215 unit: get actualHeight() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRendererWIthVerticalScroll.js start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12216 unit: isScrollable() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRendererWIthVerticalScroll.js start line: 91 end line: 93 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12217 unit: initializeCentralLine() file: client/client/modules/render/core/track/cachedTrack/cachedTrackRenderer.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12218 unit: get verticalScrollRenderer() file: client/client/modules/render/core/track/cachedTrack/cachedTrackWithVerticalScroll.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12219 unit: const destructor = function() file: client/client/modules/render/core/track/menu.js start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12220 unit: const hide = function() file: client/client/modules/render/core/track/menu.js start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12221 unit: get canvasSize() file: client/client/modules/render/core/viewport/baseViewport.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12222 unit: get chromosomeSize() file: client/client/modules/render/core/viewport/baseViewport.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12223 unit: get brushSize() file: client/client/modules/render/core/viewport/baseViewport.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12224 unit: get factor() file: client/client/modules/render/core/viewport/baseViewport.js start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12225 unit: get chromosomeFactor() file: client/client/modules/render/core/viewport/baseViewport.js start line: 31 end line: 33 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12226 unit: get convert() file: client/client/modules/render/core/viewport/baseViewport.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12227 unit: get project() file: client/client/modules/render/core/viewport/baseViewport.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12228 unit: constructor() file: client/client/modules/render/core/viewport/baseViewport.js start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 12229 unit: get shortenedIntronsMode() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12230 unit: get shortenedIntronsTrackId() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 51 end line: 53 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12231 unit: get intronLength() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12232 unit: get maximumRange() file: client/client/modules/render/core/viewport/shortenedIntrons/shortenedIntronsViewport.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12233 unit: get isShortenedIntronsMode() file: client/client/modules/render/core/viewport/viewport.js start line: 118 end line: 120 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12234 unit: get shortenedIntronsViewport() file: client/client/modules/render/core/viewport/viewport.js start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12235 unit: get blatRegion() file: client/client/modules/render/core/viewport/viewport.js start line: 154 end line: 156 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12236 unit: get blastRegion() file: client/client/modules/render/core/viewport/viewport.js start line: 163 end line: 165 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12237 unit: get canTransform() file: client/client/modules/render/core/viewport/viewport.js start line: 281 end line: 283 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12238 unit: _valueToString() file: client/client/modules/render/core/info/tableRowInfo.js start line: 12 end line: 14 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12239 unit: get value() file: client/client/modules/render/core/info/tableRowInfo.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12240 unit: addRow() file: client/client/modules/render/core/info/tableInfo.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12241 unit: function wrapGetFn() file: client/client/modules/render/core/menu/buildMenu.js start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12242 unit: export default function buildMenu() file: client/client/modules/render/core/menu/buildMenu.js start line: 183 end line: 185 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12243 unit: getCacheSize() file: client/client/modules/render/core/labelsManager/index.js start line: 87 end line: 89 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12244 unit: get canvasElement() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12245 unit: get container() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12246 unit: get renderer() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12247 unit: get scaleRenderer() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 70 end line: 72 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12248 unit: get chromosomeRenderer() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12249 unit: get width() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12250 unit: get height() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12251 unit: get range() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12252 unit: get chromosomes() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12253 unit: get hits() file: client/client/modules/render/whole-genome-render/whole-genome-renderer.js start line: 93 end line: 95 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12254 unit: get start() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12255 unit: get width() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 29 end line: 31 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12256 unit: get height() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 33 end line: 35 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12257 unit: get containerHeight() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12258 unit: get topMargin() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12259 unit: get ticksNumber() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12260 unit: set ticksNumber() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12261 unit: get ticks() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12262 unit: get realStep() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12263 unit: get pixelStep() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12264 unit: set labelWidth() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12265 unit: get labelWidth() file: client/client/modules/render/whole-genome-render/partials/scale/scaleRenderer.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12266 unit: get mask() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12267 unit: get height() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 106 end line: 108 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12268 unit: get containerWidth() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 109 end line: 111 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12269 unit: get containerHeight() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12270 unit: get topMargin() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 115 end line: 117 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12271 unit: get columnWidth() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12272 unit: getPixelLength() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 12273 unit: getGridStart() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 124 end line: 126 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 12274 unit: isInFrame() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 138 end line: 140 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 12275 unit: reCalculateActualDrawingWidth() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 157 end line: 159 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12276 unit: convertToPixels() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 582 end line: 584 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 12277 unit: sortHits() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 761 end line: 770 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12278 unit: function lengthSorter() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 762 end line: 764 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12279 unit: function scoreSorter() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 766 end line: 768 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12280 unit: hideHitInfo() file: client/client/modules/render/whole-genome-render/partials/chromosomeColumn/chromosomeColumnRenderer.js start line: 779 end line: 781 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12281 unit: get renderers() file: client/client/modules/render/tracks/bed/internal/renderer/features/featureRenderer.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12282 unit: get defaultRenderer() file: client/client/modules/render/tracks/bed/internal/renderer/features/featureRenderer.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12283 unit: static getTrackDefaultConfig() file: client/client/modules/render/tracks/bed/index.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12284 unit: get featuresFilteringEnabled() file: client/client/modules/render/tracks/bed/index.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12285 unit: get downloadHistogramFn() file: client/client/modules/render/tracks/bed/index.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12286 unit: get downloadDataFn() file: client/client/modules/render/tracks/bed/index.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12287 unit: get height() file: client/client/modules/render/tracks/wig/wigRenderer.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12288 unit: set height() file: client/client/modules/render/tracks/wig/wigRenderer.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12289 unit: static getBaseScale() file: client/client/modules/render/tracks/wig/wigRenderer.js start line: 31 end line: 33 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12290 unit: static getTrackDefaultConfig() file: client/client/modules/render/tracks/wig/index.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12291 unit: get trackHasCoverageSubTrack() file: client/client/modules/render/tracks/wig/index.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12292 unit: constructor() file: client/client/modules/render/tracks/wig/wigTransformer.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12293 unit: registerGroupAutoScaleManager() file: client/client/modules/render/tracks/wig/wigArea.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12294 unit: set line() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12295 unit: _initReadColorModeNoColor() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12296 unit: _initReadColorModeReadStrand() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 131 end line: 133 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12297 unit: _initReadColorModeInsertSize() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 135 end line: 137 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12298 unit: _convertY() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 574 end line: 576 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12299 unit: _projectX() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 577 end line: 579 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12300 unit: _projectY() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderer.js start line: 580 end line: 582 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12301 unit: set alignmentHeight() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderProcessor.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12302 unit: get renderedPosition() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderProcessor.js start line: 19 end line: 21 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12303 unit: get container() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderProcessor.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12304 unit: clear() file: client/client/modules/render/tracks/bam/internal/renderer/features/alignmentsRenderProcessor.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12305 unit: get labelsManager() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 75 end line: 77 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12306 unit: get pixiRenderer() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 82 end line: 84 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12307 unit: set height() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12308 unit: get container() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12309 unit: get scrollBarFrame() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 94 end line: 96 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12310 unit: get isScrollable() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12311 unit: get maximumAlignmentsRange() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12312 unit: get maximumCoverageRange() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12313 unit: get maximumRange() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 110 end line: 112 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12314 unit: setScrollPosition() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 140 end line: 142 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12315 unit: hoverScrollBar() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 326 end line: 328 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12316 unit: unhoverScrollBar() file: client/client/modules/render/tracks/bam/internal/renderer/bamRenderer.js start line: 330 end line: 332 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12317 unit: const getCell = function() file: client/client/modules/render/tracks/bam/internal/transformers/bamReadsCoverageTransformer.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12318 unit: get isEmpty() file: client/client/modules/render/tracks/bam/internal/transformers/layoutReads.js start line: 103 end line: 105 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12319 unit: pushRead() file: client/client/modules/render/tracks/bam/internal/transformers/layoutReads.js start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12320 unit: function testBit() file: client/client/modules/render/tracks/bam/internal/transformers/bamTransformer.js start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12321 unit: export function dumpPart() file: client/client/modules/render/tracks/bam/internal/internalUtilities.js start line: 1 end line: 3 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 12322 unit: export function undumpPart() file: client/client/modules/render/tracks/bam/internal/internalUtilities.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 12323 unit: static getTrackDefaultConfig() file: client/client/modules/render/tracks/bam/index.js start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12324 unit: get trackHasCoverageSubTrack() file: client/client/modules/render/tracks/bam/index.js start line: 159 end line: 161 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12325 unit: get isCoverageStatistics() file: client/client/modules/render/tracks/bam/index.js start line: 221 end line: 223 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12326 unit: groupingModeChanged() file: client/client/modules/render/tracks/bam/index.js start line: 447 end line: 449 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12327 unit: async getNewCache() file: client/client/modules/render/tracks/bam/index.js start line: 507 end line: 509 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12328 unit: canScroll() file: client/client/modules/render/tracks/bam/index.js start line: 511 end line: 513 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12329 unit: scrollIndicatorBoundaries() file: client/client/modules/render/tracks/bam/index.js start line: 527 end line: 529 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12330 unit: get graphics() file: client/client/modules/render/tracks/motifs/motifsMatchesRenderer.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12331 unit: get actualHeight() file: client/client/modules/render/tracks/motifs/motifsMatchesRenderer.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12332 unit: static getTrackDefaultConfig() file: client/client/modules/render/tracks/motifs/index.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12333 unit: get trackIsResizable() file: client/client/modules/render/tracks/motifs/index.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12334 unit: get verticalScrollRenderer() file: client/client/modules/render/tracks/motifs/index.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12335 unit: enabled: function() file: client/client/modules/render/tracks/motifs/index.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12336 unit: get maximumRange() file: client/client/modules/render/tracks/motifs/index.js start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12337 unit: get dataService() file: client/client/modules/render/tracks/motifs/index.js start line: 86 end line: 88 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12338 unit: get motifTrack() file: client/client/modules/render/tracks/motifs/index.js start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12339 unit: get maximumRange() file: client/client/modules/render/tracks/motifs/motifsRenderer.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12340 unit: get config() file: client/client/modules/render/tracks/motifs/motifsRenderer.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12341 unit: scroll() file: client/client/modules/render/tracks/motifs/motifsRenderer.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12342 unit: translateContainer() file: client/client/modules/render/tracks/motifs/motifsRenderer.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12343 unit: get textureCoordinates() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/featureBaseRenderer.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12344 unit: get strandIndicatorConfig() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/featureBaseRenderer.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12345 unit: shouldDrawAminoacids() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/aminoacidFeatureRenderer.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12346 unit: shouldNumberAminoacids() file: client/client/modules/render/tracks/gene/internal/renderer/features/drawing/aminoacidFeatureRenderer.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12347 unit: get defaultRenderer() file: client/client/modules/render/tracks/gene/internal/renderer/features/featureRenderer.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12348 unit: get renderers() file: client/client/modules/render/tracks/gene/internal/renderer/features/featureRenderer.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12349 unit: prepare() file: client/client/modules/render/tracks/gene/internal/renderer/features/featureRenderer.js start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12350 unit: getActualHeight() file: client/client/modules/render/tracks/gene/internal/renderer/features/featureRenderer.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12351 unit: getRendererForFeature() file: client/client/modules/render/tracks/gene/internal/renderer/features/featureRenderer.js start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12352 unit: get config() file: client/client/modules/render/tracks/gene/internal/renderer/geneRenderer.js start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12353 unit: get featureRenderer() file: client/client/modules/render/tracks/gene/internal/renderer/geneRenderer.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12354 unit: get geneHistogram() file: client/client/modules/render/tracks/gene/internal/renderer/geneRenderer.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12355 unit: get needConvertGraphicsToTexture() file: client/client/modules/render/tracks/gene/internal/renderer/geneRenderer.js start line: 82 end line: 84 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12356 unit: constructor() file: client/client/modules/render/tracks/gene/internal/data/geneTransformer.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12357 unit: get config() file: client/client/modules/render/tracks/gene/internal/data/geneTransformer.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12358 unit: static getTrackDefaultConfig() file: client/client/modules/render/tracks/gene/index.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12359 unit: get stateKeys() file: client/client/modules/render/tracks/gene/index.js start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12360 unit: get featuresFilteringEnabled() file: client/client/modules/render/tracks/gene/index.js start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12361 unit: const disabledMessageFn = function() file: client/client/modules/render/tracks/gene/index.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12362 unit: currentTrackManagesShortenedIntronsMode() file: client/client/modules/render/tracks/gene/index.js start line: 176 end line: 178 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12363 unit: get downloadHistogramFn() file: client/client/modules/render/tracks/gene/index.js start line: 200 end line: 202 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12364 unit: get downloadDataFn() file: client/client/modules/render/tracks/gene/index.js start line: 204 end line: 206 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12365 unit: get verticalScrollRenderer() file: client/client/modules/render/tracks/gene/index.js start line: 229 end line: 231 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12366 unit: applyAdditionalRequestParameters() file: client/client/modules/render/tracks/gene/index.js start line: 394 end line: 396 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12367 unit: function featureIsEnabled() file: client/client/modules/render/tracks/gene/exterior/featuresMenu.js start line: 1 end line: 3 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 12368 unit: getFeatureDisplayText() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/commonVariantFeatureRenderer.js start line: 60 end line: 62 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12369 unit: get alleleLabelHeight() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/variantAltFeatureRenderer.js start line: 15 end line: 17 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12370 unit: static getStatisticsText() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/features/drawing/statisticsFeatureRenderer.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12371 unit: get needConvertGraphicsToTexture() file: client/client/modules/render/tracks/vcf/internal/renderer/expanded/vcfRenderer.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12372 unit: get totalHeight() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/scroll.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12373 unit: set totalHeight() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/scroll.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12374 unit: get displayedHeight() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/scroll.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12375 unit: set displayedHeight() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/scroll.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12376 unit: get scrollerVisible() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/scroll.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12377 unit: get scrollPosition() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/scroll.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12378 unit: set scrollPosition() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/scroll.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12379 unit: get scrollerHovered() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/scroll.js start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12380 unit: get height() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/coverage.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12381 unit: set height() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/coverage.js start line: 11 end line: 13 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12382 unit: get height() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/index.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12383 unit: set height() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/index.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12384 unit: animate() file: client/client/modules/render/tracks/vcf/internal/renderer/sample/index.js start line: 706 end line: 708 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12385 unit: get endContainers() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/variantContainer.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12386 unit: get variant() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/baseContainer.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12387 unit: get container() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/baseContainer.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12388 unit: get linesGraphics() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/baseContainer.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12389 unit: get highlightGraphics() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/baseContainer.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12390 unit: get labelsManager() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/baseContainer.js start line: 36 end line: 38 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12391 unit: buildComponent() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/baseContainer.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12392 unit: render() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/baseContainer.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12393 unit: unhover() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/baseContainer.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12394 unit: hover() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/baseContainer.js start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12395 unit: unfade() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/baseContainer.js start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12396 unit: fade() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/variants/baseContainer.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12397 unit: get height() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/vcfRenderer.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12398 unit: set height() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/vcfRenderer.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12399 unit: onClick() file: client/client/modules/render/tracks/vcf/internal/renderer/collapsed/vcfRenderer.js start line: 206 end line: 208 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12400 unit: get collapsed() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12401 unit: set collapsed() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12402 unit: set highlightProfileConditions() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12403 unit: isHistogramDrawingModeForViewport() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12404 unit: const sortSelector = function() file: client/client/modules/render/tracks/vcf/internal/data/vcfTransformer.js start line: 288 end line: 290 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12405 unit: get collapseSamples() file: client/client/modules/render/tracks/vcf/internal/data/multi-sample-vcf-transformer.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12406 unit: set collapseSamples() file: client/client/modules/render/tracks/vcf/internal/data/multi-sample-vcf-transformer.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12407 unit: static getTrackDefaultConfig() file: client/client/modules/render/tracks/vcf/index.js start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12408 unit: get stateKeys() file: client/client/modules/render/tracks/vcf/index.js start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12409 unit: get featuresFilteringEnabled() file: client/client/modules/render/tracks/vcf/index.js start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12410 unit: enabled: function() file: client/client/modules/render/tracks/vcf/index.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12411 unit: this._removeHotKeyListener = function() file: client/client/modules/render/tracks/vcf/index.js start line: 166 end line: 168 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12412 unit: get downloadHistogramFn() file: client/client/modules/render/tracks/vcf/index.js start line: 188 end line: 190 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12413 unit: get downloadDataFn() file: client/client/modules/render/tracks/vcf/index.js start line: 192 end line: 194 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12414 unit: applyAdditionalRequestParameters() file: client/client/modules/render/tracks/vcf/index.js start line: 196 end line: 198 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12415 unit: static getTrackDefaultConfig() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12416 unit: applyAdditionalRequestParameters() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 171 end line: 173 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12417 unit: isScrollable() file: client/client/modules/render/tracks/vcf/multi-sample-vcf.js start line: 203 end line: 205 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12418 unit: static getTrackDefaultConfig() file: client/client/modules/render/tracks/ruler/index.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12419 unit: get trackIsResizable() file: client/client/modules/render/tracks/ruler/index.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12420 unit: get config() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12421 unit: get visibleSources() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12422 unit: set visibleSources() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 52 end line: 54 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12423 unit: get showPlaceholder() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12424 unit: get singleColors() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12425 unit: set singleColors() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12426 unit: get grayScaleColors() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12427 unit: set grayScaleColors() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12428 unit: get sourcesCount() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12429 unit: get movingSource() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 102 end line: 104 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12430 unit: set movingSource() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 106 end line: 108 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12431 unit: get sourceOrders() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 110 end line: 112 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12432 unit: set sourceOrders() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcBarChartRenderer.js start line: 114 end line: 116 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12433 unit: get renderers() file: client/client/modules/render/tracks/featureCounts/internal/renderer/features/featureCountRenderer.js start line: 19 end line: 21 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12434 unit: get defaultRenderer() file: client/client/modules/render/tracks/featureCounts/internal/renderer/features/featureCountRenderer.js start line: 23 end line: 25 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12435 unit: registerGroupAutoScaleManager() file: client/client/modules/render/tracks/featureCounts/internal/renderer/bar-chart/bar-chart-source-renderer.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12436 unit: registerFCSourcesManager() file: client/client/modules/render/tracks/featureCounts/internal/renderer/bar-chart/bar-chart-source-renderer.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12437 unit: get source() file: client/client/modules/render/tracks/featureCounts/internal/renderer/bar-chart/bar-chart-source-renderer.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12438 unit: get needConvertGraphicsToTexture() file: client/client/modules/render/tracks/featureCounts/internal/renderer/fcRenderer.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12439 unit: static getTrackDefaultConfig() file: client/client/modules/render/tracks/featureCounts/index.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12440 unit: get featuresFilteringEnabled() file: client/client/modules/render/tracks/featureCounts/index.js start line: 107 end line: 109 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12441 unit: get barChartDisplayMode() file: client/client/modules/render/tracks/featureCounts/index.js start line: 118 end line: 120 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12442 unit: get trackHasCoverageSubTrack() file: client/client/modules/render/tracks/featureCounts/index.js start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12443 unit: function sourceIsEnabled() file: client/client/modules/render/tracks/featureCounts/menu/sourcesMenu.js start line: 1 end line: 3 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 12444 unit: static instance() file: client/client/modules/render/tracks/featureCounts/sourcesManager/index.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12445 unit: get sources() file: client/client/modules/render/tracks/featureCounts/sourcesManager/index.js start line: 15 end line: 17 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12446 unit: get config() file: client/client/modules/render/tracks/blast/renderer.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12447 unit: static getTrackDefaultConfig() file: client/client/modules/render/tracks/blast/index.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12448 unit: get verticalScrollRenderer() file: client/client/modules/render/tracks/blast/index.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12449 unit: get trackIsResizable() file: client/client/modules/render/tracks/blast/index.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12450 unit: get config() file: client/client/modules/render/tracks/comparison/renderer.js start line: 6 end line: 8 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12451 unit: static getTrackDefaultConfig() file: client/client/modules/render/tracks/comparison/index.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12452 unit: get verticalScrollRenderer() file: client/client/modules/render/tracks/comparison/index.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12453 unit: get trackIsResizable() file: client/client/modules/render/tracks/comparison/index.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12454 unit: static getTrackDefaultConfig() file: client/client/modules/render/tracks/seg/index.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12455 unit: get dataService() file: client/client/modules/render/tracks/seg/index.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12456 unit: get segTrack() file: client/client/modules/render/tracks/seg/index.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12457 unit: hoverVerticalScroll() file: client/client/modules/render/tracks/seg/index.js start line: 75 end line: 77 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12458 unit: unhoverVerticalScroll() file: client/client/modules/render/tracks/seg/index.js start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12459 unit: canScroll() file: client/client/modules/render/tracks/seg/index.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12460 unit: isScrollable() file: client/client/modules/render/tracks/seg/index.js start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12461 unit: scrollIndicatorBoundaries() file: client/client/modules/render/tracks/seg/index.js start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12462 unit: setScrollPosition() file: client/client/modules/render/tracks/seg/index.js start line: 95 end line: 97 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12463 unit: get config() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12464 unit: get data() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 18 end line: 20 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12465 unit: set data() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12466 unit: get actualHeight() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 26 end line: 28 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12467 unit: set actualHeight() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12468 unit: get height() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12469 unit: set height() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12470 unit: get needScroll() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 42 end line: 44 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12471 unit: get y() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12472 unit: set y() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12473 unit: get sampleHeight() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 54 end line: 56 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12474 unit: get blocks() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12475 unit: set blocks() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 62 end line: 64 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12476 unit: isScrollable() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 125 end line: 127 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12477 unit: setScrollPosition() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 143 end line: 145 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12478 unit: const itemsFilterFn = function() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 217 end line: 219 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12479 unit: const drawItemFn = function() file: client/client/modules/render/tracks/seg/segRenderer.js start line: 221 end line: 223 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12480 unit: static getTrackDefaultConfig() file: client/client/modules/render/tracks/heatmap/index.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12481 unit: get stateKeys() file: client/client/modules/render/tracks/heatmap/index.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12482 unit: get height() file: client/client/modules/render/tracks/reference/referenceRenderer.js start line: 20 end line: 22 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12483 unit: set height() file: client/client/modules/render/tracks/reference/referenceRenderer.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12484 unit: _getLabelStyleConfig() file: client/client/modules/render/tracks/reference/referenceRenderer.js start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12485 unit: static getTrackDefaultConfig() file: client/client/modules/render/tracks/reference/index.js start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12486 unit: get trackIsResizable() file: client/client/modules/render/tracks/reference/index.js start line: 39 end line: 41 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12487 unit: export default function ensureEmptyValue() file: client/client/modules/render/utilities/ensureEmptyValue.js start line: 1 end line: 3 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 12488 unit: static instance() file: client/client/modules/render/utilities/groupAutoScaleManager.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12489 unit: get container() file: client/client/modules/render/utilities/placeholderRenderer.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12490 unit: constructor() file: client/client/modules/render/utilities/zonesManager.js start line: 10 end line: 12 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12491 unit: get zones() file: client/client/modules/render/utilities/zonesManager.js start line: 14 end line: 16 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12492 unit: static findClosestDecimalDegree() file: client/client/modules/render/utilities/numberFormatter.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12493 unit: static formattedText() file: client/client/modules/render/utilities/numberFormatter.js start line: 96 end line: 98 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12494 unit: function isAllValuesRange() file: client/client/modules/render/utilities/linearDimensionsConflicts.js start line: 7 end line: 9 size: 3 LOC McCabe index: 3 number of parameters: 2 id: 12495 unit: function isOpenRange() file: client/client/modules/render/utilities/linearDimensionsConflicts.js start line: 17 end line: 19 size: 3 LOC McCabe index: 3 number of parameters: 2 id: 12496 unit: get userInteracted() file: client/client/modules/render/heatmap/interactions/index.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12497 unit: clearUserInteracted() file: client/client/modules/render/heatmap/interactions/index.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12498 unit: onRender() file: client/client/modules/render/heatmap/interactions/index.js start line: 83 end line: 85 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12499 unit: requestRender() file: client/client/modules/render/heatmap/interactions/index.js start line: 87 end line: 89 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12500 unit: onInteractionOccurs() file: client/client/modules/render/heatmap/interactions/interactive-zone.js start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12501 unit: interactionOccurs() file: client/client/modules/render/heatmap/interactions/interactive-zone.js start line: 34 end line: 36 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12502 unit: requestRender() file: client/client/modules/render/heatmap/interactions/interactive-zone.js start line: 38 end line: 40 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12503 unit: shouldDrag() file: client/client/modules/render/heatmap/interactions/interactive-zone.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12504 unit: onDrag() file: client/client/modules/render/heatmap/interactions/interactive-zone.js start line: 74 end line: 76 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12505 unit: onDoubleClick() file: client/client/modules/render/heatmap/interactions/interactive-zone.js start line: 91 end line: 93 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12506 unit: onClick() file: client/client/modules/render/heatmap/interactions/interactive-zone.js start line: 100 end line: 102 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12507 unit: onScroll() file: client/client/modules/render/heatmap/interactions/interactive-zone.js start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12508 unit: destroy() file: client/client/modules/render/heatmap/interactions/interactive-zone.js start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12509 unit: test() file: client/client/modules/render/heatmap/interactions/interactive-zone.js start line: 139 end line: 141 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12510 unit: get defaultIsPrevented() file: client/client/modules/render/heatmap/interactions/events/interactive-zone-event.js start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12511 unit: get immediatePropagationStopped() file: client/client/modules/render/heatmap/interactions/events/interactive-zone-event.js start line: 119 end line: 121 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12512 unit: preventDefault() file: client/client/modules/render/heatmap/interactions/events/interactive-zone-event.js start line: 126 end line: 128 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12513 unit: stopImmediatePropagation() file: client/client/modules/render/heatmap/interactions/events/interactive-zone-event.js start line: 133 end line: 135 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12514 unit: get visible() file: client/client/modules/render/heatmap/renderer/heatmap-options-renderer/index.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12515 unit: get columns() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/index.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12516 unit: get rows() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/index.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12517 unit: onLayout() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/index.js start line: 78 end line: 80 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12518 unit: clearSession() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/binary-tree-graphics.js start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12519 unit: get windowSize() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 122 end line: 124 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12520 unit: getAxis() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 143 end line: 145 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12521 unit: getAxisDirection() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 151 end line: 153 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12522 unit: getAxisNormal() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 159 end line: 161 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12523 unit: getDendrogramTree() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 167 end line: 169 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12524 unit: onLayout() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 171 end line: 173 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12525 unit: shouldDrag() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 295 end line: 297 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12526 unit: onDragStart() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 300 end line: 302 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12527 unit: onDragEnd() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 316 end line: 318 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12528 unit: clearSession() file: client/client/modules/render/heatmap/renderer/dendrogram-renderer/axis-dendrogram-renderers.js start line: 327 end line: 329 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12529 unit: get scrollerDragging() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12530 unit: get scrollerHovered() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 55 end line: 57 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12531 unit: get size() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12532 unit: clearRenderSession() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 79 end line: 81 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12533 unit: test() file: client/client/modules/render/heatmap/renderer/viewport-renderer/scroller-renderer.js start line: 111 end line: 113 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12534 unit: test() file: client/client/modules/render/heatmap/renderer/viewport-renderer/index.js start line: 78 end line: 80 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12535 unit: shouldDrag() file: client/client/modules/render/heatmap/renderer/viewport-renderer/index.js start line: 82 end line: 84 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12536 unit: onAxisClick() file: client/client/modules/render/heatmap/renderer/viewport-renderer/index.js start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12537 unit: onLayout() file: client/client/modules/render/heatmap/renderer/viewport-renderer/index.js start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12538 unit: static initializeTicks() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/axis-label.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12539 unit: get hovered() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/axis-label.js start line: 303 end line: 305 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12540 unit: get faded() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/axis-label.js start line: 317 end line: 319 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12541 unit: get visible() file: client/client/modules/render/heatmap/renderer/viewport-renderer/utilities/axis-label.js start line: 328 end line: 330 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12542 unit: get hoveredTick() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 88 end line: 90 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12543 unit: onAxisItemClick() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 160 end line: 162 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12544 unit: onLayout() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 164 end line: 166 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12545 unit: onDendrogramModeChanged() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 168 end line: 170 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12546 unit: clearRenderSession() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 245 end line: 247 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12547 unit: getHoveredValue() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 254 end line: 256 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12548 unit: getScrollValue() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 347 end line: 349 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12549 unit: getDragValue() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 364 end line: 366 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12550 unit: test() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 507 end line: 509 size: 3 LOC McCabe index: 3 number of parameters: 1 id: 12551 unit: getScrollValue() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 517 end line: 519 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12552 unit: getDragValue() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 521 end line: 523 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12553 unit: test() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 554 end line: 556 size: 3 LOC McCabe index: 3 number of parameters: 1 id: 12554 unit: getScrollValue() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 564 end line: 566 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12555 unit: getDragValue() file: client/client/modules/render/heatmap/renderer/viewport-renderer/axis-renderer.js start line: 568 end line: 570 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12556 unit: updateBounds() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12557 unit: get visible() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 138 end line: 140 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12558 unit: get enabled() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 151 end line: 153 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12559 unit: get hovered() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 163 end line: 165 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12560 unit: onButtonClicked() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 207 end line: 209 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12561 unit: onVisibilityChanged() file: client/client/modules/render/heatmap/renderer/checkbox-button/index.js start line: 211 end line: 213 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12562 unit: get hovered() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12563 unit: onAnimate() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12564 unit: onDestroy() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 71 end line: 73 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12565 unit: get hovered() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 171 end line: 173 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12566 unit: onRequestRender() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 210 end line: 212 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12567 unit: requestRender() file: client/client/modules/render/heatmap/renderer/data-renderer/hovered-renderer/index.js start line: 214 end line: 216 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12568 unit: get updating() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 105 end line: 107 size: 3 LOC McCabe index: 3 number of parameters: 0 id: 12569 unit: onUpdating() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 191 end line: 193 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12570 unit: onShowTooltip() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 195 end line: 197 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12571 unit: onHideTooltip() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 199 end line: 201 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12572 unit: onDataItemClick() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 203 end line: 205 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12573 unit: clearSession() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 207 end line: 209 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12574 unit: test() file: client/client/modules/render/heatmap/renderer/data-renderer/index.js start line: 378 end line: 380 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12575 unit: hasValues() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/collapsed-tree.js start line: 90 end line: 92 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12576 unit: get topLeft() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/collapsed-tree.js start line: 166 end line: 168 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12577 unit: get topRight() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/collapsed-tree.js start line: 170 end line: 172 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12578 unit: get bottomLeft() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/collapsed-tree.js start line: 174 end line: 176 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12579 unit: get bottomRight() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/collapsed-tree.js start line: 178 end line: 180 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12580 unit: get alpha() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/index.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12581 unit: get isComplete() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry.js start line: 35 end line: 37 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12582 unit: get alpha() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry-collection.js start line: 22 end line: 24 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12583 unit: handleChange() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry-collection.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12584 unit: get current() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/heatmap-mesh/heatmap-geometry-collection.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12585 unit: createTree() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12586 unit: get partialRebuildRequired() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12587 unit: get partialRebuildInProgress() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12588 unit: get fullRebuildRequired() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 80 end line: 82 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12589 unit: get fullRebuildInProgress() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 84 end line: 86 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12590 unit: get updating() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 88 end line: 90 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12591 unit: initializePixiObjects() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 92 end line: 94 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12592 unit: onUpdating() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12593 unit: onRequestRender() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 116 end line: 118 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12594 unit: requestRender() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 120 end line: 122 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12595 unit: batchInsertStart() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 356 end line: 358 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12596 unit: clearSession() file: client/client/modules/render/heatmap/renderer/data-renderer/heatmap-graphics/base.js start line: 425 end line: 427 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12597 unit: onLayout() file: client/client/modules/render/heatmap/renderer/color-scheme-renderer/index.js start line: 157 end line: 159 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12598 unit: clearSession() file: client/client/modules/render/heatmap/renderer/color-scheme-renderer/index.js start line: 161 end line: 163 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12599 unit: constructor() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12600 unit: get scale() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12601 unit: get size() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12602 unit: get deviceSize() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12603 unit: get range() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 112 end line: 114 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12604 unit: canMoveBy() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 221 end line: 223 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12605 unit: moveBy() file: client/client/modules/render/heatmap/viewport/heatmap-axis.js start line: 267 end line: 269 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12606 unit: get deviceWidth() file: client/client/modules/render/heatmap/viewport/index.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12607 unit: set deviceWidth() file: client/client/modules/render/heatmap/viewport/index.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12608 unit: get deviceHeight() file: client/client/modules/render/heatmap/viewport/index.js start line: 72 end line: 74 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12609 unit: set deviceHeight() file: client/client/modules/render/heatmap/viewport/index.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12610 unit: get deviceAvailableWidth() file: client/client/modules/render/heatmap/viewport/index.js start line: 80 end line: 82 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12611 unit: get deviceAvailableHeight() file: client/client/modules/render/heatmap/viewport/index.js start line: 89 end line: 91 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12612 unit: get offsetX() file: client/client/modules/render/heatmap/viewport/index.js start line: 98 end line: 100 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12613 unit: get offsetY() file: client/client/modules/render/heatmap/viewport/index.js start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12614 unit: get description() file: client/client/modules/render/heatmap/viewport/index.js start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12615 unit: get minimumTickSize() file: client/client/modules/render/heatmap/viewport/heatmap-scale.js start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12616 unit: get invalid() file: client/client/modules/render/heatmap/viewport/heatmap-scale.js start line: 64 end line: 66 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12617 unit: get tickSize() file: client/client/modules/render/heatmap/viewport/heatmap-scale.js start line: 68 end line: 70 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12618 unit: set tickSize() file: client/client/modules/render/heatmap/viewport/heatmap-scale.js start line: 76 end line: 78 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12619 unit: onNavigated() file: client/client/modules/render/heatmap/navigation/index.js start line: 314 end line: 316 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12620 unit: get isAnimating() file: client/client/modules/render/heatmap/animation/animated.js start line: 6 end line: 8 size: 3 LOC McCabe index: 3 number of parameters: 0 id: 12621 unit: childAnimationDone() file: client/client/modules/render/heatmap/animation/animation-set.js start line: 28 end line: 30 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12622 unit: get referenceId() file: client/client/modules/render/heatmap/index.js start line: 46 end line: 48 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12623 unit: set referenceId() file: client/client/modules/render/heatmap/index.js start line: 50 end line: 52 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12624 unit: resize() file: client/client/modules/render/heatmap/index.js start line: 150 end line: 152 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12625 unit: onColumnsRowsReordered() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 195 end line: 197 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12626 unit: get dendrogramAvailable() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 199 end line: 201 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12627 unit: get annotationsAvailable() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 221 end line: 223 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12628 unit: get columnsRowsReordered() file: client/client/modules/render/heatmap/heatmap-data/heatmap-metadata.js start line: 225 end line: 227 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12629 unit: get options() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 22 end line: 24 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12630 unit: get error() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 44 end line: 46 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12631 unit: get referenceId() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12632 unit: set referenceId() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12633 unit: onClear() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 250 end line: 252 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12634 unit: onMetadataLoaded() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 254 end line: 256 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12635 unit: onTreeLoaded() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 258 end line: 260 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12636 unit: onDataLoaded() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 262 end line: 264 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12637 unit: onColumnsRowsReordered() file: client/client/modules/render/heatmap/heatmap-data/index.js start line: 266 end line: 268 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12638 unit: function dataItemIsArray() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 3 end line: 5 size: 3 LOC McCabe index: 4 number of parameters: 1 id: 12639 unit: function dataItemIsString() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 19 end line: 21 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12640 unit: function dataIsDataItem() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 50 end line: 52 size: 3 LOC McCabe index: 3 number of parameters: 1 id: 12641 unit: function dataIsTreeArray() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 54 end line: 56 size: 3 LOC McCabe index: 4 number of parameters: 1 id: 12642 unit: function dataIsTreeObject() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 58 end line: 60 size: 3 LOC McCabe index: 4 number of parameters: 1 id: 12643 unit: function dataIsTree() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 62 end line: 64 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12644 unit: get isLeaf() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 145 end line: 147 size: 3 LOC McCabe index: 3 number of parameters: 0 id: 12645 unit: get invalid() file: client/client/modules/render/heatmap/utilities/heatmap-binary-tree.js start line: 149 end line: 151 size: 3 LOC McCabe index: 3 number of parameters: 0 id: 12646 unit: get() file: client/client/modules/render/heatmap/utilities/make-initializable.js start line: 65 end line: 67 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12647 unit: function getKey() file: client/client/modules/render/heatmap/utilities/trie.js start line: 1 end line: 3 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12648 unit: function shiftIndex() file: client/client/modules/render/heatmap/utilities/trie.js start line: 5 end line: 7 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12649 unit: function isLeaf() file: client/client/modules/render/heatmap/utilities/trie.js start line: 9 end line: 11 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12650 unit: function recoverIndex() file: client/client/modules/render/heatmap/utilities/trie.js start line: 13 end line: 15 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12651 unit: setData() file: client/client/modules/render/heatmap/utilities/trie.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12652 unit: has() file: client/client/modules/render/heatmap/utilities/trie.js start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12653 unit: function isUndefinedOrNull() file: client/client/modules/render/heatmap/utilities/heatmap-trie.js start line: 12 end line: 14 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12654 unit: function correctUndefinedOrNull() file: client/client/modules/render/heatmap/utilities/heatmap-trie.js start line: 16 end line: 18 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12655 unit: get metadata() file: client/client/modules/render/heatmap/utilities/heatmap-trie.js start line: 183 end line: 185 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12656 unit: set metadata() file: client/client/modules/render/heatmap/utilities/heatmap-trie.js start line: 191 end line: 193 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12657 unit: constructor() file: client/client/modules/render/heatmap/utilities/heatmap-event-dispatcher.js start line: 2 end line: 4 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12658 unit: removeEventListeners() file: client/client/modules/render/heatmap/utilities/heatmap-event-dispatcher.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12659 unit: get dendrogramAvailable() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 97 end line: 99 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12660 unit: get colorScheme() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12661 unit: get data() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 105 end line: 107 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12662 unit: get dataConfig() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 109 end line: 111 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12663 unit: get dendrogram() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 113 end line: 115 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12664 unit: get annotationsAvailable() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12665 unit: get annotations() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 129 end line: 131 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12666 unit: onChange() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 141 end line: 143 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12667 unit: setDataConfigurationCache() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 145 end line: 147 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12668 unit: onAnnotationsModeChanged() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 239 end line: 241 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12669 unit: onColumnsRowsReordered() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 243 end line: 245 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12670 unit: onDendrogramModeChanged() file: client/client/modules/render/heatmap/heatmap-view-options/index.js start line: 247 end line: 249 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12671 unit: function writeStates() file: client/client/modules/render/heatmap/heatmap-view-options/manager.js start line: 11 end line: 13 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12672 unit: get width() file: client/client/modules/render/heatmap/heatmap-view.js start line: 84 end line: 86 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12673 unit: get height() file: client/client/modules/render/heatmap/heatmap-view.js start line: 95 end line: 97 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12674 unit: get padding() file: client/client/modules/render/heatmap/heatmap-view.js start line: 106 end line: 108 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12675 unit: get referenceId() file: client/client/modules/render/heatmap/heatmap-view.js start line: 144 end line: 146 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12676 unit: set referenceId() file: client/client/modules/render/heatmap/heatmap-view.js start line: 148 end line: 150 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12677 unit: get include() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 16 end line: 18 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12678 unit: static fromColor() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12679 unit: static singleColorCollection() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 272 end line: 274 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12680 unit: get length() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 311 end line: 313 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12681 unit: get keys() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 319 end line: 321 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12682 unit: getGradientByKey() file: client/client/modules/render/heatmap/color-scheme/gradient.js start line: 328 end line: 330 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12683 unit: onChanged() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 265 end line: 267 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12684 unit: onConfigureRequest() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 269 end line: 271 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12685 unit: configureRequest() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 273 end line: 275 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12686 unit: get type() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 277 end line: 279 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12687 unit: get dataType() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 313 end line: 315 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12688 unit: get missingColor() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 400 end line: 402 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12689 unit: get highColor() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 409 end line: 411 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12690 unit: get lowColor() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 418 end line: 420 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12691 unit: get mediumColor() file: client/client/modules/render/heatmap/color-scheme/index.js start line: 427 end line: 429 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12692 unit: get uid() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 113 end line: 115 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12693 unit: get color() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 117 end line: 119 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12694 unit: get colorValue() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 121 end line: 123 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12695 unit: set color() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 125 end line: 127 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12696 unit: get value() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 129 end line: 131 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12697 unit: get singleValue() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 142 end line: 144 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12698 unit: get rangeValue() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 155 end line: 157 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12699 unit: set rangeValue() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 159 end line: 161 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12700 unit: get from() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 163 end line: 165 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12701 unit: get to() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 175 end line: 177 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12702 unit: get dataType() file: client/client/modules/render/heatmap/color-scheme/color-configuration.js start line: 187 end line: 189 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12703 unit: function interpolate() file: client/client/modules/render/heatmap/color-scheme/helpers.js start line: 58 end line: 60 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 12704 unit: get domainsInfo() file: client/client/modules/render/variant-render/renderers/drawing/utilities/domain-colors-manager.js start line: 17 end line: 19 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12705 unit: set genesInfo() file: client/client/modules/render/variant-render/renderers/drawing/utilities/domain-colors-manager.js start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12706 unit: get genesInfo() file: client/client/modules/render/variant-render/renderers/drawing/utilities/domain-colors-manager.js start line: 25 end line: 27 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12707 unit: constructor() file: client/client/modules/render/variant-render/renderers/drawing/feature-cut-off/feature-cut-off-renderer.js start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12708 unit: get config() file: client/client/modules/render/variant-render/renderers/zones/variant-zones-manager.js start line: 8 end line: 10 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12709 unit: get zones() file: client/client/modules/render/variant-render/renderers/zones/variant-zones-manager.js start line: 12 end line: 14 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12710 unit: configureZones() file: client/client/modules/render/variant-render/renderers/zones/variant-zones-manager.js start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12711 unit: getStartPosition() file: client/client/modules/render/variant-render/renderers/zones/variant-zones-manager.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12712 unit: getEndPosition() file: client/client/modules/render/variant-render/renderers/zones/variant-zones-manager.js start line: 85 end line: 87 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12713 unit: getHeight() file: client/client/modules/render/variant-render/renderers/zones/variant-zones-manager.js start line: 89 end line: 91 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12714 unit: get config() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 43 end line: 45 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12715 unit: get featureCutOffRenderer() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 47 end line: 49 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12716 unit: get variantZonesManager() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12717 unit: get dragManager() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 55 end line: 57 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12718 unit: get height() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12719 unit: get strandDirectionRenderer() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 63 end line: 65 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12720 unit: get domainColorsManager() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 67 end line: 69 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12721 unit: _registerExonPosition() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 639 end line: 641 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12722 unit: _registerDomainLegendPosition() file: client/client/modules/render/variant-render/renderers/structural-variant-renderer.js start line: 643 end line: 645 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 12723 unit: get variant() file: client/client/modules/render/variant-render/renderers/base-renderer.js start line: 29 end line: 31 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12724 unit: get container() file: client/client/modules/render/variant-render/renderers/base-renderer.js start line: 33 end line: 35 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12725 unit: get viewports() file: client/client/modules/render/variant-render/renderers/base-renderer.js start line: 37 end line: 39 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12726 unit: get height() file: client/client/modules/render/variant-render/renderers/base-renderer.js start line: 41 end line: 43 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12727 unit: manageViewports() file: client/client/modules/render/variant-render/renderers/base-renderer.js start line: 51 end line: 53 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12728 unit: get config() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 32 end line: 34 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12729 unit: get featureCutOffRenderer() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 36 end line: 38 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12730 unit: get sequenceRenderer() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 40 end line: 42 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12731 unit: get aminoacidRenderer() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 44 end line: 46 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12732 unit: get exonsCoverageRenderer() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 48 end line: 50 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12733 unit: get strandDirectionRenderer() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 52 end line: 54 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12734 unit: get variantZonesManager() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 56 end line: 58 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12735 unit: get dragManager() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 60 end line: 62 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12736 unit: get height() file: client/client/modules/render/variant-render/renderers/short-variant-renderer.js start line: 64 end line: 66 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12737 unit: get canvasElement() file: client/client/modules/render/variant-render/variant-renderer.js start line: 45 end line: 47 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12738 unit: get container() file: client/client/modules/render/variant-render/variant-renderer.js start line: 49 end line: 51 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12739 unit: get renderer() file: client/client/modules/render/variant-render/variant-renderer.js start line: 53 end line: 55 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12740 unit: get variant() file: client/client/modules/render/variant-render/variant-renderer.js start line: 57 end line: 59 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12741 unit: set variant() file: client/client/modules/render/variant-render/variant-renderer.js start line: 61 end line: 63 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12742 unit: get options() file: client/client/modules/render/variant-render/variant-renderer.js start line: 65 end line: 67 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12743 unit: set options() file: client/client/modules/render/variant-render/variant-renderer.js start line: 69 end line: 71 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12744 unit: get variantFeatureRenderer() file: client/client/modules/render/variant-render/variant-renderer.js start line: 73 end line: 75 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12745 unit: get width() file: client/client/modules/render/variant-render/variant-renderer.js start line: 77 end line: 79 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12746 unit: get height() file: client/client/modules/render/variant-render/variant-renderer.js start line: 81 end line: 83 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12747 unit: static preprocessSequence() file: client/client/modules/render/variant-render/transformers/short-variant-transformer.js start line: 472 end line: 474 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12748 unit: static get $$ngIsClass() file: client/client/modules/uiGridGroupColumns/ui-grid-group-columns.js start line: 24 end line: 26 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12749 unit: export function getColumnFilterConfig() file: export-templates/target-identification/src/common/table/utilities.ts start line: 59 end line: 61 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12750 unit: export function isUndefined() file: export-templates/target-identification/src/model/utilities.ts start line: 3 end line: 5 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 12751 unit: export function isNumber() file: export-templates/target-identification/src/model/utilities.ts start line: 7 end line: 9 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 12752 unit: export function isLinkValue() file: export-templates/target-identification/src/model/utilities.ts start line: 11 end line: 13 size: 3 LOC McCabe index: 3 number of parameters: 1 id: 12753 unit: export function useIdentificationName() file: export-templates/target-identification/src/model/main.ts start line: 21 end line: 23 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12754 unit: export function useGenesOfInterest() file: export-templates/target-identification/src/model/main.ts start line: 27 end line: 29 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12755 unit: export function useTranslationalGenes() file: export-templates/target-identification/src/model/main.ts start line: 30 end line: 32 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 12756 unit: export function useTotalCountDiseases() file: export-templates/target-identification/src/model/main.ts start line: 47 end line: 49 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12757 unit: export function useTotalCountStructures() file: export-templates/target-identification/src/model/main.ts start line: 60 end line: 62 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12758 unit: export function useTotalCountGenomics() file: export-templates/target-identification/src/model/main.ts start line: 64 end line: 66 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12759 unit: export function useTotalCountPublications() file: export-templates/target-identification/src/model/main.ts start line: 68 end line: 70 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12760 unit: export default function useInjectedData() file: export-templates/target-identification/src/model/base/use-injected-data.ts start line: 10 end line: 12 size: 3 LOC McCabe index: 2 number of parameters: 0 id: 12761 unit: exec() file: desktop/src/ScriptUtils.js start line: 64 end line: 66 size: 2 LOC McCabe index: 1 number of parameters: 4 id: 12762 unit: public ConfigurationLoader() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/app/ConfigurationLoader.java start line: 93 end line: 95 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12763 unit: public ProjectItem() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/ProjectItem.java start line: 41 end line: 43 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12764 unit: public PermissionGrantRequest() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/entity/PermissionGrantRequest.java start line: 43 end line: 45 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12765 unit: private MessageConstants() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/constants/MessageConstants.java start line: 75 end line: 77 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12766 unit: private RequestManager() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/request/RequestManager.java start line: 47 end line: 49 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12767 unit: public void checkClientTrusted() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/request/RequestManager.java start line: 87 end line: 88 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 12768 unit: public void checkServerTrusted() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/request/RequestManager.java start line: 91 end line: 92 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 12769 unit: public FileRegistrationHandler() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/FileRegistrationHandler.java start line: 103 end line: 105 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12770 unit: protected void parseAnnotationType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/heatmap/AbstractHeatmapUpdateHandler.java start line: 86 end line: 88 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12771 unit: protected void addAnnotationType() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/heatmap/AbstractHeatmapUpdateHandler.java start line: 89 end line: 91 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12772 unit: public AbstractHTTPCommandHandler() file: server/ngb-cli/src/main/java/com/epam/ngb/cli/manager/command/handler/http/AbstractHTTPCommandHandler.java start line: 138 end line: 140 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12773 unit: protected void beforeRequest() file: server/catgenome/src/main/java/com/epam/catgenome/app/CustomRequestLoggingFilter.java start line: 33 end line: 35 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 12774 unit: public TomcatConfigurerImpl() file: server/catgenome/src/main/java/com/epam/catgenome/app/TomcatConfigurerImpl.java start line: 8 end line: 10 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12775 unit: private MotifSearcher() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/MotifSearcher.java start line: 38 end line: 39 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12776 unit: private IupacRegexConverter() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/IupacRegexConverter.java start line: 32 end line: 33 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12777 unit: private RegexReverser() file: server/catgenome/src/main/java/com/epam/catgenome/util/motif/RegexReverser.java start line: 37 end line: 38 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12778 unit: private FeatureSorterFactory() file: server/catgenome/src/main/java/com/epam/catgenome/util/sort/FeatureSorterFactory.java start line: 39 end line: 41 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12779 unit: private AzureSeekableStreamFactory() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureSeekableStreamFactory.java start line: 37 end line: 38 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12780 unit: public AzureBlobClient() file: server/catgenome/src/main/java/com/epam/catgenome/util/azure/AzureBlobClient.java start line: 122 end line: 124 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12781 unit: private IOHelper() file: server/catgenome/src/main/java/com/epam/catgenome/util/IOHelper.java start line: 58 end line: 60 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12782 unit: private NgbFileUtils() file: server/catgenome/src/main/java/com/epam/catgenome/util/NgbFileUtils.java start line: 128 end line: 130 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12783 unit: private Utils() file: server/catgenome/src/main/java/com/epam/catgenome/util/Utils.java start line: 106 end line: 108 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12784 unit: private ConsensusSequenceUtils() file: server/catgenome/src/main/java/com/epam/catgenome/util/ConsensusSequenceUtils.java start line: 55 end line: 57 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12785 unit: private BamUtil() file: server/catgenome/src/main/java/com/epam/catgenome/util/BamUtil.java start line: 71 end line: 73 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12786 unit: private ProteinSequenceUtils() file: server/catgenome/src/main/java/com/epam/catgenome/util/ProteinSequenceUtils.java start line: 50 end line: 51 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12787 unit: private DBQueryUtils() file: server/catgenome/src/main/java/com/epam/catgenome/util/db/DBQueryUtils.java start line: 39 end line: 41 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12788 unit: private S3SeekableStreamFactory() file: server/catgenome/src/main/java/com/epam/catgenome/util/aws/S3SeekableStreamFactory.java start line: 43 end line: 44 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12789 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/util/feature/reader/TabixIteratorLineReader.java start line: 28 end line: 30 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12790 unit: private IndexUtils() file: server/catgenome/src/main/java/com/epam/catgenome/util/IndexUtils.java start line: 112 end line: 114 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12791 unit: private HistogramUtils() file: server/catgenome/src/main/java/com/epam/catgenome/util/HistogramUtils.java start line: 56 end line: 58 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12792 unit: private SecurityExpressions() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/SecurityExpressions.java start line: 50 end line: 52 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12793 unit: private PermissionUtils() file: server/catgenome/src/main/java/com/epam/catgenome/security/acl/PermissionUtils.java start line: 13 end line: 14 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12794 unit: public BiologicalDataItem() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BiologicalDataItem.java start line: 59 end line: 61 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12795 unit: public MafRecord() file: server/catgenome/src/main/java/com/epam/catgenome/entity/maf/MafRecord.java start line: 76 end line: 78 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12796 unit: public BedRecord() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bed/BedRecord.java start line: 52 end line: 54 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12797 unit: public Block() file: server/catgenome/src/main/java/com/epam/catgenome/entity/track/Block.java start line: 52 end line: 54 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12798 unit: public void clearForReadOnlyView() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AbstractHierarchicalEntity.java start line: 93 end line: 95 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12799 unit: public void clearParent() file: server/catgenome/src/main/java/com/epam/catgenome/entity/security/AbstractSecuredEntity.java start line: 65 end line: 67 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12800 unit: public Wig() file: server/catgenome/src/main/java/com/epam/catgenome/entity/wig/Wig.java start line: 42 end line: 44 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12801 unit: public NgbSamTagAndValue() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/NgbSamTagAndValue.java start line: 15 end line: 17 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12802 unit: public BasePosition() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BasePosition.java start line: 51 end line: 53 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12803 unit: public BaseCoverage() file: server/catgenome/src/main/java/com/epam/catgenome/entity/bam/BaseCoverage.java start line: 47 end line: 49 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12804 unit: public ProteinSequenceEntry() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequenceEntry.java start line: 45 end line: 47 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12805 unit: public ProteinSequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/protein/ProteinSequence.java start line: 45 end line: 47 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12806 unit: public BaseEntity() file: server/catgenome/src/main/java/com/epam/catgenome/entity/BaseEntity.java start line: 55 end line: 57 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12807 unit: public OrderBy() file: server/catgenome/src/main/java/com/epam/catgenome/entity/AbstractFilterForm.java start line: 52 end line: 54 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12808 unit: public GeneTranscript() file: server/catgenome/src/main/java/com/epam/catgenome/entity/gene/GeneTranscript.java start line: 45 end line: 47 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12809 unit: public FilterSection() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfFilterForm.java start line: 454 end line: 456 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12810 unit: public GenotypeData() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/GenotypeData.java start line: 57 end line: 59 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12811 unit: public VcfSample() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/VcfSample.java start line: 38 end line: 40 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12812 unit: public Filter() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/Filter.java start line: 34 end line: 36 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12813 unit: public InfoItem() file: server/catgenome/src/main/java/com/epam/catgenome/entity/vcf/InfoItem.java start line: 42 end line: 44 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12814 unit: private FormatCoder() file: server/catgenome/src/main/java/com/epam/catgenome/entity/nucleotid/FormatCoder.java start line: 41 end line: 43 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12815 unit: public Group() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/Group.java start line: 10 end line: 12 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12816 unit: public IndexSearchResult() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/IndexSearchResult.java start line: 64 end line: 66 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12817 unit: public FeatureIndexEntry() file: server/catgenome/src/main/java/com/epam/catgenome/entity/index/FeatureIndexEntry.java start line: 65 end line: 67 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12818 unit: public SegSample() file: server/catgenome/src/main/java/com/epam/catgenome/entity/seg/SegSample.java start line: 33 end line: 35 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12819 unit: public Sequence() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Sequence.java start line: 55 end line: 57 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12820 unit: public Chromosome() file: server/catgenome/src/main/java/com/epam/catgenome/entity/reference/Chromosome.java start line: 62 end line: 64 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12821 unit: private IndexQueryUtils() file: server/catgenome/src/main/java/com/epam/catgenome/dao/index/IndexQueryUtils.java start line: 40 end line: 42 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12822 unit: private BookmarkConverter() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/BookmarkConverter.java start line: 41 end line: 43 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12823 unit: private ProjectConverter() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/converter/ProjectConverter.java start line: 55 end line: 57 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12824 unit: public FilesVO() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/FilesVO.java start line: 16 end line: 18 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12825 unit: private Query2TrackConverter() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/Query2TrackConverter.java start line: 45 end line: 47 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12826 unit: public CallSetSearch() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/CallSetSearch.java start line: 52 end line: 54 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12827 unit: public VariantsGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsGA4GH.java start line: 89 end line: 91 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12828 unit: public VariantGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantGA4GH.java start line: 77 end line: 79 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12829 unit: public ReferenceBasesGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceBasesGA4GH.java start line: 60 end line: 62 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12830 unit: public ReferenceGA4GH() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceGA4GH.java start line: 62 end line: 64 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12831 unit: public ReferenceBound() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/ReferenceBound.java start line: 47 end line: 49 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12832 unit: public VariantsSearch() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantsSearch.java start line: 51 end line: 53 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12833 unit: public VariantCall() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantCall.java start line: 70 end line: 72 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12834 unit: public VariantSet() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSet.java start line: 79 end line: 81 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12835 unit: public VariantSetMetadata() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/VariantSetMetadata.java start line: 77 end line: 79 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12836 unit: public CallSet() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/ga4gh/CallSet.java start line: 63 end line: 65 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12837 unit: public UrlRequestVO() file: server/catgenome/src/main/java/com/epam/catgenome/controller/vo/UrlRequestVO.java start line: 10 end line: 12 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12838 unit: public ProteinSequenceVariationQuery() file: server/catgenome/src/main/java/com/epam/catgenome/controller/gene/ProteinSequenceVariationQuery.java start line: 47 end line: 49 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12839 unit: private ParallelTaskExecutionUtils() file: server/catgenome/src/main/java/com/epam/catgenome/manager/parallel/ParallelTaskExecutionUtils.java start line: 46 end line: 48 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12840 unit: public void setStrand() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 118 end line: 119 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12841 unit: public void setColor() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 121 end line: 122 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12842 unit: public void setScore() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 124 end line: 125 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12843 unit: public void setName() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 127 end line: 128 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12844 unit: public void setThickStart() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 130 end line: 131 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12845 unit: public void setThickEnd() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 133 end line: 134 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12846 unit: public void setBlockCount() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 141 end line: 142 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12847 unit: public void setBlockSizes() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 149 end line: 150 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12848 unit: public void setBlockStarts() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 157 end line: 158 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12849 unit: public void setId() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 165 end line: 166 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12850 unit: public void setDescription() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bed/parser/NggbMultiFormatBedFeature.java start line: 168 end line: 169 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12851 unit: public void finish() file: server/catgenome/src/main/java/com/epam/catgenome/manager/bam/sifters/FullResultSifter.java start line: 70 end line: 71 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12852 unit: private GeneUtils() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/GeneUtils.java start line: 84 end line: 86 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12853 unit: private Gff3Codec() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Codec.java start line: 29 end line: 31 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12854 unit: private Gff3Constants() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/writer/Gff3Constants.java start line: 15 end line: 17 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12855 unit: private FeatureCountsParserUtils() file: server/catgenome/src/main/java/com/epam/catgenome/manager/gene/featurecounts/FeatureCountsParserUtils.java start line: 49 end line: 51 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12856 unit: private GenePredUtils() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genepred/GenePredUtils.java start line: 43 end line: 45 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12857 unit: private ExtenalDBUtils() file: server/catgenome/src/main/java/com/epam/catgenome/manager/externaldb/ExtenalDBUtils.java start line: 58 end line: 60 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12858 unit: private ExcelExportUtils() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/ExcelExportUtils.java start line: 44 end line: 46 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12859 unit: private ExportUtils() file: server/catgenome/src/main/java/com/epam/catgenome/manager/export/ExportUtils.java start line: 40 end line: 42 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12860 unit: private GenbankUtils() file: server/catgenome/src/main/java/com/epam/catgenome/manager/genbank/GenbankUtils.java start line: 56 end line: 58 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12861 unit: public void close() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/ChromosomeReferenceSequence.java start line: 136 end line: 138 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12862 unit: private FastaUtils() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/FastaUtils.java start line: 32 end line: 34 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12863 unit: public NibDataReader() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataReader.java start line: 73 end line: 75 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12864 unit: private GCContainer() file: server/catgenome/src/main/java/com/epam/catgenome/manager/reference/io/NibDataWriter.java start line: 253 end line: 255 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12865 unit: private MessagesConstants() file: server/catgenome/src/main/java/com/epam/catgenome/constant/MessagesConstants.java start line: 321 end line: 323 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12866 unit: private Constants() file: server/catgenome/src/main/java/com/epam/catgenome/constant/Constants.java start line: 178 end line: 180 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12867 unit: template: require() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 205 end line: 206 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12868 unit: template: require() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 222 end line: 223 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12869 unit: template: require() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 240 end line: 241 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12870 unit: template: require() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 258 end line: 259 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12871 unit: template: require() file: client/client/app/shared/components/ngbUserManagement/ngbUserManagementDlg/ngbUserManagementDlg.controller.js start line: 276 end line: 277 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 12872 unit: constructor() file: client/client/app/shared/components/ngbCytoscapeToolbarPanel/ngbCytoscapeToolbarPanel.controller.js start line: 3 end line: 4 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12873 unit: container._config.title.replace = function() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 319 end line: 320 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12874 unit: container._config.title.replace = function() file: client/client/app/shared/components/ngbGoldenLayout/ngbGoldenLayout.controller.js start line: 347 end line: 348 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 12875 unit: controller: function() file: client/client/app/shared/components/ngbUiParts/ngbProjectReference.component.js start 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