server/catgenome/src/main/resources/static/blastx.html [96:183]:
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<tr>
<td><strong>Query filtering options</strong></td>
</tr>
<tr>
<td><strong><code>-seg</code></strong></td>
<td>String</td>
<td>Filter query sequence with SEG (Format: <code>yes</code>, <code>window locut hicut</code>, or <code>no</code> to disable). Default = <code>12 2.2 2.5</code></td>
</tr>
<tr>
<td><strong><code>-soft_masking</code></strong></td>
<td>Boolean</td>
<td>Apply filtering locations as soft masks. Default = <code>false</code></td>
</tr>
<tr>
<td><strong><code>-lcase_masking</code></strong></td>
<td>Flag</td>
<td>Use lower case filtering in query and subject sequence(s)?</td>
</tr>
<tr>
<td><strong>Restrict search or results</strong></td>
</tr>
<tr>
<td><strong><code>-db_soft_mask</code></strong></td>
<td>String</td>
<td>Filtering algorithm ID to apply to the BLAST database as soft masking. Incompatible with: <strong><code>-db_hard_mask</code></strong></td>
</tr>
<tr>
<td><strong><code>-db_hard_mask</code></strong></td>
<td>String</td>
<td>Filtering algorithm ID to apply to the BLAST database as hard masking. Incompatible with: <strong><code>-db_soft_mask</code></strong></td>
</tr>
<tr>
<td><strong><code>-qcov_hsp_perc</code></strong></td>
<td>Real, 0..100</td>
<td>Percent query coverage per hsp</td>
</tr>
<tr>
<td><strong><code>-max_hsps</code></strong></td>
<td>Integer, &gt;= 1</td>
<td>Set maximum number of HSPs per subject sequence to save for each query</td>
</tr>
<tr>
<td><strong><code>-culling_limit</code></strong></td>
<td>Integer, &gt;= 0</td>
<td>If the query range of a hit is enveloped by that of at least this many higher-scoring hits, delete the hit. Incompatible with: <strong><code>-best_hit_overhang</code></strong>, <strong><code>-best_hit_score_edge</code></strong></td>
</tr>
<tr>
<td><strong><code>-best_hit_overhang</code></strong></td>
<td>Real, (&gt; 0 and &lt; 0.5)</td>
<td>Best Hit algorithm overhang value (recommended value: <code>0.1</code>). Incompatible with: <strong><code>-culling_limit</code></strong></td>
</tr>
<tr>
<td><strong><code>-best_hit_score_edge</code></strong></td>
<td>Real, (&gt; 0 and &lt; 0.5)</td>
<td>Best Hit algorithm score edge value (recommended value: <code>0.1</code>). Incompatible with: <strong><code>-culling_limit</code></strong></td>
</tr>
<tr>
<td><strong><code>-subject_besthit</code></strong></td>
<td>Flag</td>
<td>Turn on best hit per subject sequence</td>
</tr>
<tr>
<td><strong>Statistical options</strong></td>
</tr>
<tr>
<td><strong><code>-dbsize</code></strong></td>
<td>Integer</td>
<td>Effective length of the database</td>
</tr>
<tr>
<td><strong><code>-searchsp</code></strong></td>
<td>Integer, &gt;= 0</td>
<td>Effective length of the search space</td>
</tr>
<tr>
<td><strong><code>-sum_stats</code></strong></td>
<td>Boolean</td>
<td>Use sum statistics</td>
</tr>
<tr>
<td><strong>Extension options</strong></td>
</tr>
<tr>
<td><strong><code>-xdrop_ungap</code></strong></td>
<td>Real</td>
<td>X-dropoff value (in bits) for ungapped extensions</td>
</tr>
<tr>
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server/catgenome/src/main/resources/static/tblastx.html [86:173]:
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<tr>
<td><strong>Query filtering options</strong></td>
</tr>
<tr>
<td><strong><code>-seg</code></strong></td>
<td>String</td>
<td>Filter query sequence with SEG (Format: <code>yes</code>, <code>window locut hicut</code>, or <code>no</code> to disable). Default = <code>12 2.2 2.5</code></td>
</tr>
<tr>
<td><strong><code>-soft_masking</code></strong></td>
<td>Boolean</td>
<td>Apply filtering locations as soft masks. Default = <code>false</code></td>
</tr>
<tr>
<td><strong><code>-lcase_masking</code></strong></td>
<td>Flag</td>
<td>Use lower case filtering in query and subject sequence(s)?</td>
</tr>
<tr>
<td><strong>Restrict search or results</strong></td>
</tr>
<tr>
<td><strong><code>-db_soft_mask</code></strong></td>
<td>String</td>
<td>Filtering algorithm ID to apply to the BLAST database as soft masking. Incompatible with: <strong><code>-db_hard_mask</code></strong></td>
</tr>
<tr>
<td><strong><code>-db_hard_mask</code></strong></td>
<td>String</td>
<td>Filtering algorithm ID to apply to the BLAST database as hard masking. Incompatible with: <strong><code>-db_soft_mask</code></strong></td>
</tr>
<tr>
<td><strong><code>-qcov_hsp_perc</code></strong></td>
<td>Real, 0..100</td>
<td>Percent query coverage per hsp</td>
</tr>
<tr>
<td><strong><code>-max_hsps</code></strong></td>
<td>Integer, &gt;= 1</td>
<td>Set maximum number of HSPs per subject sequence to save for each query</td>
</tr>
<tr>
<td><strong><code>-culling_limit</code></strong></td>
<td>Integer, &gt;= 0</td>
<td>If the query range of a hit is enveloped by that of at least this many higher-scoring hits, delete the hit. Incompatible with: <strong><code>-best_hit_overhang</code></strong>, <strong><code>-best_hit_score_edge</code></strong></td>
</tr>
<tr>
<td><strong><code>-best_hit_overhang</code></strong></td>
<td>Real, (&gt; 0 and &lt; 0.5)</td>
<td>Best Hit algorithm overhang value (recommended value: <code>0.1</code>). Incompatible with: <strong><code>-culling_limit</code></strong></td>
</tr>
<tr>
<td><strong><code>-best_hit_score_edge</code></strong></td>
<td>Real, (&gt; 0 and &lt; 0.5)</td>
<td>Best Hit algorithm score edge value (recommended value: <code>0.1</code>). Incompatible with: <strong><code>-culling_limit</code></strong></td>
</tr>
<tr>
<td><strong><code>-subject_besthit</code></strong></td>
<td>Flag</td>
<td>Turn on best hit per subject sequence</td>
</tr>
<tr>
<td><strong>Statistical options</strong></td>
</tr>
<tr>
<td><strong><code>-dbsize</code></strong></td>
<td>Integer</td>
<td>Effective length of the database</td>
</tr>
<tr>
<td><strong><code>-searchsp</code></strong></td>
<td>Integer, &gt;= 0</td>
<td>Effective length of the search space</td>
</tr>
<tr>
<td><strong><code>-sum_stats</code></strong></td>
<td>Boolean</td>
<td>Use sum statistics</td>
</tr>
<tr>
<td><strong>Extension options</strong></td>
</tr>
<tr>
<td><strong><code>-xdrop_ungap</code></strong></td>
<td>Real</td>
<td>X-dropoff value (in bits) for ungapped extensions</td>
</tr>
<tr>
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