Path	Lines of Code
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/CloudBlobData.java	40
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/CloudFileData.java	42
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/Data.java	12
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/EmptyStubData.java	33
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/LocalFileData.java	39
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/SmbData.java	34
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/provider/DataProvider.java	7
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/provider/MatchingDataProvider.java	27
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/provider/StubDataProvider.java	18
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/provider/azure/AzureBlobStorageDataProvider.java	36
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/provider/azure/AzureFileStorageDataProvider.java	45
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/provider/azure/AzureStorageConfiguration.java	40
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/provider/azure/properties/AzureStorageProperties.java	17
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/provider/local/LocalFileSystemDataProvider.java	46
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/provider/samba/SambaDataProvider.java	55
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/util/FileTypeUtil.java	13
clns-acuity-admin/acuity-common/src/main/java/com/acuity/visualisations/data/util/Util.java	133
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/Application.java	35
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/config/AcuityAdminConfiguration.java	7
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/exception/MethodFailureException.java	15
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/service/AMLJobService.java	33
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/service/AbstractJobService.java	101
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/service/ETLJobService.java	118
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/service/JobService.java	7
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/task/CheckFailedJobsTask.java	29
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/task/CheckMissingFilesTask.java	45
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/task/DurableJobDetailFactoryBean.java	84
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/task/JobLauncherDetails.java	97
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/util/SchedulerFactoryBeanDBDrivenWrapper.java	100
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/WebConfiguration.java	52
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/auth/PermissionHelper.java	56
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/auth/PrincipalInfo.java	29
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/auth/SecurityConfig.java	56
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/auth/SpringSecurityInitializer.java	4
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/auth/UserInfoHolder.java	35
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/auth/WebAuthorizationFilter.java	25
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/AbstractController.java	74
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/AdminController.java	200
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/AdminUiErrorController.java	17
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/AuditController.java	38
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/AuthController.java	11
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/ClinicalStudyController.java	1107
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/ControllerUtils.java	195
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/DataController.java	39
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/DictionaryController.java	44
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/DrugProgrammeController.java	528
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/FileUploadBean.java	13
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/FileViewController.java	40
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/GitController.java	19
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/HelpController.java	20
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/LoginController.java	11
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/LogoutController.java	18
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/ReportController.java	71
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/SchedulerController.java	113
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/SourceController.java	101
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/StudySetupSubjectGroupController.java	52
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/TabCookieController.java	15
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/controller/TestController.java	37
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dao/DictinaryDao.java	81
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dao/EmailDetailsDao.java	47
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dao/HelpDao.java	30
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dao/IHelpDao.java	7
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dao/MappingDao.java	47
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dao/cdbp/CDBPConfiguration.java	27
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dao/cdbp/CDBPDaoSupport.java	15
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dao/cdbp/CDBPProjectDao.java	10
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dao/cdbp/CDBPProjectDaoImpl.java	58
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dao/cdbp/CDBPStudyDao.java	9
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dao/cdbp/CDBPStudyDaoImpl.java	67
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dao/cdbp/FallbackCDBPProjectDao.java	26
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dao/cdbp/FallbackCDBPStudyDao.java	22
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/DeferredMessage.java	21
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/DisclaimerWarningsHolder.java	20
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/DrugProgrammeGroupValuesDTO.java	27
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/EntityRuleDTO.java	34
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/FieldRuleDTO.java	21
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/FileRuleDTO.java	86
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/GroupRuleDTO.java	22
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/Id.java	13
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/IdLabel.java	21
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/MapRuleDTO.java	105
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/MapRulesDTO.java	43
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/MappingStatusDTO.java	13
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/ModulesStatusDTO.java	16
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/PrimitiveObjWrapper.java	12
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/ProjectGroupValueDTO.java	45
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/ProjectInfoDTO.java	23
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/SortColumnDTO.java	11
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/StudyBaselineDrugs.java	19
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/StudyInfoDTO.java	71
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/SubjectGroupValuesDTO.java	21
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/TableDataDTO.java	14
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/dto/TableMetaDTO.java	24
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/entity/EmailDetailsEntity.java	59
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/entity/JobExecutionEvent.java	87
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/entity/MappedColumnInfo.java	39
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/entity/ReportErrorType.java	12
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/entity/ReportType.java	8
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/entity/ValueReportEntity.java	68
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/entity/xml/Help.java	34
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/entity/xml/Page.java	36
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/entity/xml/Pages.java	16
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/exception/AdminException.java	10
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/exception/ClinicalStudyException.java	10
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/exception/DrugProgrammeException.java	10
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/AcuityEmailNotificationService.java	142
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/AdminService.java	70
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/AuditService.java	31
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/CleanupTask.java	52
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/CustomEhCacheCacheManager.java	16
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/EtlSchedulerService.java	267
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/EtlSessionService.java	68
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/FileViewService.java	178
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/GitState.java	21
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/HelpService.java	16
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/Hook.java	19
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/IHelpService.java	7
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/IReportService.java	10
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/MappingPredictionService.java	148
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/ReportService.java	112
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/SchedulerSessionStorage.java	50
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/SchedulerStatusStorage.java	12
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/ShutdownService.java	30
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/SourceService.java	91
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/SyncService.java	48
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/UIFunctionsManager.java	99
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/AllEventListener.java	228
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/AmlAllEventListener.java	34
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/AmlBatchJobExecutionListener.java	13
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/AmlQuartzJobListener.java	11
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/AmlQuartzSchedulerListener.java	13
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/AmlQuartzTriggerListener.java	12
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/CommonBatchJobExecutionListener.java	55
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/CommonBatchStepExecutionListener.java	19
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/CommonQuartzJobListener.java	24
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/CommonQuartzSchedulerListener.java	44
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/CommonQuartzTriggerListener.java	40
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/ConditionalListener.java	5
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/EtlAllEventListener.java	41
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/EtlBatchExecutionListener.java	58
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/EtlBatchJobExecutionListener.java	18
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/EtlBatchStepExecutionListener.java	21
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/EtlQuartzJobListener.java	42
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/EtlQuartzSchedulerListener.java	13
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/EtlQuartzTriggerListener.java	12
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/ExecutionStateAware.java	5
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/listener/ObservableListener.java	5
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/uploadreports/UploadReportRepository.java	129
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/uploadreports/UploadReportService.java	67
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/uploadreports/vo/UploadReportSummary.java	13
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/instance/GroupingsService.java	48
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/instance/ProjectAndStudyService.java	40
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/programme/DrugProgrammeWizardService.java	184
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/programme/ProgrammeGroupingsService.java	116
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/StudyAltLabCodeService.java	32
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/StudyBaselineDrugService.java	18
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/StudyDrugsExplorerService.java	106
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/StudyExcludingValueService.java	63
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/StudyGroupingsService.java	97
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/StudyMappingsService.java	253
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/StudyRelationService.java	24
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/StudySetupSubjectGroupRepository.java	37
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/StudySetupSubjectGroupService.java	211
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/StudyWizardService.java	217
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/vo/SubjectGroup.java	26
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/vo/SubjectGroupDosing.java	27
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/vo/SubjectGroupDosingSchedule.java	19
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/vo/SubjectGroupTimeUnit.java	19
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/vo/SubjectGrouping.java	30
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/vo/SubjectGroupingType.java	14
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/service/wizard/study/vo/SubjectGroupings.java	13
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/util/Consts.java	11
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/util/GroupingsUtils.java	51
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/util/JsonUtil.java	128
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/workflow/ClinicalStudyWorkflow.java	73
clns-acuity-admin/acuity-core/src/main/java/com/acuity/visualisations/web/workflow/DrugProgramWorkflow.java	65
clns-acuity-admin/acuity-core/src/main/resources/EntitiesDescription.xml	1576
clns-acuity-admin/acuity-core/src/main/resources/EntitiesToTables.xml	198
clns-acuity-admin/acuity-core/src/main/resources/TablesDescription.xml	681
clns-acuity-admin/acuity-core/src/main/resources/cdbp/VW_ACUITY.sql	16
clns-acuity-admin/acuity-core/src/main/resources/codereview/findbugs-exclude.xml	18
clns-acuity-admin/acuity-core/src/main/resources/codereview/pmd-ruleset.xml	25
clns-acuity-admin/acuity-core/src/main/resources/codereview/pmd/basic.xml	1181
clns-acuity-admin/acuity-core/src/main/resources/codereview/pmd/braces.xml	128
clns-acuity-admin/acuity-core/src/main/resources/codereview/pmd/codesize.xml	316
clns-acuity-admin/acuity-core/src/main/resources/codereview/pmd/coupling.xml	76
clns-acuity-admin/acuity-core/src/main/resources/codereview/pmd/design.xml	1535
clns-acuity-admin/acuity-core/src/main/resources/codereview/pmd/imports.xml	106
clns-acuity-admin/acuity-core/src/main/resources/codereview/pmd/javabeans.xml	70
clns-acuity-admin/acuity-core/src/main/resources/codereview/pmd/junit.xml	336
clns-acuity-admin/acuity-core/src/main/resources/codereview/pmd/naming.xml	485
clns-acuity-admin/acuity-core/src/main/resources/codereview/pmd/strictexception.xml	305
clns-acuity-admin/acuity-core/src/main/resources/codereview/pmd/unusedcode.xml	86
clns-acuity-admin/acuity-core/src/main/resources/ehcache.xml	22
clns-acuity-admin/acuity-core/src/main/resources/help.xml	2704
clns-acuity-admin/acuity-core/src/main/resources/logback-spring.xml	57
clns-acuity-admin/acuity-core/src/main/resources/mappers/StudySetupSubjectGroupRepository.xml	218
clns-acuity-admin/acuity-core/src/main/resources/public/css/admin.css	123
clns-acuity-admin/acuity-core/src/main/resources/public/css/app.css	185
clns-acuity-admin/acuity-core/src/main/resources/public/css/drug-project.css	685
clns-acuity-admin/acuity-core/src/main/resources/public/css/error.css	59
clns-acuity-admin/acuity-core/src/main/resources/public/css/help.css	27
clns-acuity-admin/acuity-core/src/main/resources/public/css/instance-setup.css	604
clns-acuity-admin/acuity-core/src/main/resources/public/css/jquery.multiselect.css	19
clns-acuity-admin/acuity-core/src/main/resources/public/css/jquery.splitter.css	41
clns-acuity-admin/acuity-core/src/main/resources/public/css/login.less	139
clns-acuity-admin/acuity-core/src/main/resources/public/css/ng-sortable/ng-sortable.min.css	1
clns-acuity-admin/acuity-core/src/main/resources/public/css/report.css	120
clns-acuity-admin/acuity-core/src/main/resources/public/css/reset.css	42
clns-acuity-admin/acuity-core/src/main/resources/public/css/smart_wizard_vertical.css	110
clns-acuity-admin/acuity-core/src/main/resources/public/css/style.css	80
clns-acuity-admin/acuity-core/src/main/resources/public/css/tipTip.css	95
clns-acuity-admin/acuity-core/src/main/resources/public/css/ui.jqgrid.css	139
clns-acuity-admin/acuity-core/src/main/resources/public/js/admin.js	257
clns-acuity-admin/acuity-core/src/main/resources/public/js/ajax.js	189
clns-acuity-admin/acuity-core/src/main/resources/public/js/help.js	3
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/angular-1.3.3/angular-csp.css	9
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-3.4.1/css/bootstrap-theme.css	581
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-3.4.1/js/npm.js	12
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/css/bootstrap-select.css	250
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/bootstrap-select.js	972
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-cs_CZ.js	9
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-de_DE.js	9
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-en_US.js	18
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-es_CL.js	9
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-eu.js	9
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-fr_FR.js	16
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-it_IT.js	9
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-nl_NL.js	9
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-pl_PL.js	11
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-pt_BR.js	9
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-ro_RO.js	9
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-ru_RU.js	9
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-ua_UA.js	9
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-zh_CN.js	9
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/bootstrap-select-v1.6.3/js/i18n/defaults-zh_TW.js	11
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/i18n/grid.locale-en.js	120
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/json2.js	169
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/noty/bottomLeft.js	39
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/noty/top.js	32
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/select2/select2-bootstrap.css	285
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/throttle-debounce-1.1.js	39
clns-acuity-admin/acuity-core/src/main/resources/public/js/js-lib/ui-bootstrap-0.11.0/ui-bootstrap-tpls-0.11.0.js	3216
clns-acuity-admin/acuity-core/src/main/resources/public/js/login.js	30
clns-acuity-admin/acuity-core/src/main/resources/public/js/programme-setup/1-search-programme.js	239
clns-acuity-admin/acuity-core/src/main/resources/public/js/programme-setup/2-edit-programme.js	306
clns-acuity-admin/acuity-core/src/main/resources/public/js/programme-setup/3-setup-groupings.js	970
clns-acuity-admin/acuity-core/src/main/resources/public/js/programme-setup/4-summary.js	55
clns-acuity-admin/acuity-core/src/main/resources/public/js/programme-setup/main.js	243
clns-acuity-admin/acuity-core/src/main/resources/public/js/report.js	241
clns-acuity-admin/acuity-core/src/main/resources/public/js/scheduler.js	351
clns-acuity-admin/acuity-core/src/main/resources/public/js/search-filter.js	33
clns-acuity-admin/acuity-core/src/main/resources/public/js/set-tab-id-cookie.js	26
clns-acuity-admin/acuity-core/src/main/resources/public/js/study-setup/1-search-study.js	300
clns-acuity-admin/acuity-core/src/main/resources/public/js/study-setup/2-edit-study.js	493
clns-acuity-admin/acuity-core/src/main/resources/public/js/study-setup/3-edit-mappings.js	1556
clns-acuity-admin/acuity-core/src/main/resources/public/js/study-setup/4-edit-groupings.js	574
clns-acuity-admin/acuity-core/src/main/resources/public/js/study-setup/5-summary.js	163
clns-acuity-admin/acuity-core/src/main/resources/public/js/study-setup/main.js	473
clns-acuity-admin/acuity-core/src/main/resources/public/js/study-setup/project-groupings.js	155
clns-acuity-admin/acuity-core/src/main/resources/public/js/study-setup/step-alt_lab_codes.js	258
clns-acuity-admin/acuity-core/src/main/resources/public/js/study-setup/step-baseline-drugs.js	165
clns-acuity-admin/acuity-core/src/main/resources/public/js/study-setup/step-cbioportal-genomic-profile.js	108
clns-acuity-admin/acuity-core/src/main/resources/public/js/study-setup/step-exclusion_values.js	277
clns-acuity-admin/acuity-core/src/main/resources/public/js/study-setup/study-subject-groupings.js	100
clns-acuity-admin/acuity-core/src/main/resources/public/js/utils.js	154
clns-acuity-admin/acuity-core/src/main/resources/public/js/wizard-common.js	444
clns-acuity-admin/acuity-core/src/main/resources/public/views/audit/index.html	74
clns-acuity-admin/acuity-core/src/main/resources/public/views/fileView/index.html	3
clns-acuity-admin/acuity-core/src/main/resources/public/views/header/_header.html	19
clns-acuity-admin/acuity-core/src/main/resources/public/views/main.html	1
clns-acuity-admin/acuity-core/src/main/resources/public/views/report/report.html	112
clns-acuity-admin/acuity-core/src/main/resources/public/views/report/reportTable.html	63
clns-acuity-admin/acuity-core/src/main/resources/public/views/subjectGroupings/doseTab.html	277
clns-acuity-admin/acuity-core/src/main/resources/public/views/subjectGroupings/subjectGroupings.html	136
clns-acuity-admin/acuity-core/src/main/resources/public/views/uploadSummary/index.html	82
clns-acuity-admin/acuity-core/src/main/resources/spring/applicationContext-dao.xml	79
clns-acuity-admin/acuity-core/src/main/resources/spring/applicationContext-datasource.xml	20
clns-acuity-admin/acuity-core/src/main/resources/spring/applicationContext-email.xml	17
clns-acuity-admin/acuity-core/src/main/resources/spring/applicationContext-mybatis.xml	14
clns-acuity-admin/acuity-core/src/main/resources/spring/applicationContext-scheduler.xml	20
clns-acuity-admin/acuity-core/src/main/resources/spring/applicationContext-springbatch.xml	115
clns-acuity-admin/acuity-core/src/main/resources/spring/applicationContext.xml	14
clns-acuity-admin/acuity-core/src/main/resources/spring/jndi/applicationContext-datasource.xml	9
clns-acuity-admin/acuity-core/src/main/resources/spring/warnings/disclaimers.xml	29
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/admin-header.jsp	17
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/admin.jsp	160
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/app.jsp	41
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/errorPage.jsp	22
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/header.jsp	10
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/includes.jsp	31
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/index.jsp	10
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/login.jsp	33
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/programme-setup/1-search-programme.jsp	28
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/programme-setup/2-edit-programme.jsp	67
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/programme-setup/3-setup-groupings.jsp	151
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/programme-setup/4-summary.jsp	46
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/programme-setup/main.jsp	108
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/report.jsp	83
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/scheduler.jsp	38
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/search-filter.jsp	5
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/servicePage.jsp	95
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/study-setup/1-search-study.jsp	36
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/study-setup/2-edit-study.jsp	196
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/study-setup/3-edit-mappings.jsp	144
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/study-setup/4-edit-groupings.jsp	110
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/study-setup/5-summary.jsp	116
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/study-setup/main.jsp	241
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/study-setup/project-groupings.jsp	24
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/study-setup/step-alt_lab_codes.jsp	20
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/study-setup/step-baseline-drugs.jsp	35
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/study-setup/step-cBioPortal-genomic-profile.jsp	117
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/study-setup/step-exclusion_values.jsp	19
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/study-setup/study-subject-groupings.jsp	95
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/unauthorized-user.jsp	10
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/welcome.jsp	4
clns-acuity-admin/acuity-core/src/main/webapp/WEB-INF/jsp/wizard-common.jsp	71
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/CntlinDataHolder.java	22
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/EOFEventHolder.java	73
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/HashValuesHolder.java	158
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/HolderResolver.java	112
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/HoldersAware.java	197
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/JobExecutionInfo.java	38
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/JobExecutionInfoAware.java	88
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/JobExecutionInfoBuilder.java	37
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/RowParameters.java	39
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/configuration/ConfigurationDataHolder.java	34
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/configuration/ConfigurationUtil.java	37
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/configuration/ConfigurationUtilCommonImpl.java	442
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/configuration/ConfigurationUtilHolder.java	19
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/configuration/DBConfigurationUtil.java	30
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/configuration/DBStudyMappingConfigurationHolder.java	214
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/configuration/IColumnRule.java	21
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/configuration/IStudyRule.java	6
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/configuration/SdtmDataHolder.java	33
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/configuration/StaticConfigurationHolder.java	17
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/configuration/StaticConfigurationHolderImpl.java	58
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/configuration/StudyMappingConfigurationHolder.java	4
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/configuration/StudyRuntimeConfigurationHolder.java	17
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/holders/configuration/StudyRuntimeConfigurationHolderImpl.java	52
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/listener/CommonStepListener.java	33
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/listener/DataAccessExceptionRetryListener.java	14
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/processor/AeSplitter.java	245
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/processor/DataAlertReport.java	51
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/processor/DataCommonReport.java	219
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/processor/EntityCache.java	31
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/processor/ExceptionReport.java	39
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/processor/InputModelChunkProcessor.java	6
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/processor/InputModelChunkProcessorImpl.java	448
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/processor/SdtmParsers.java	91
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/processor/SubjectRandomiser.java	34
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/reader/InputModelChunkReader.java	270
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/reader/ResourceInfo.java	28
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/reader/ResourceInfoAwareItemReader.java	6
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/reader/ResourceInfoFile.java	30
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/reader/SkippedFilesAndHoldersAware.java	51
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/reader/SmbSasMultiResourceItemReader.java	186
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/reader/tablereader/CsvTableReader.java	87
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/reader/tablereader/FileTypeAwareTableReader.java	43
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/reader/tablereader/NoopTableReader.java	27
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/reader/tablereader/SasTableReader.java	89
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/reader/tablereader/TableReader.java	12
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/reader/tablereader/TableRow.java	4
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/tasklet/AmlTasklet.java	59
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/tasklet/CleanupTasklet.java	35
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/tasklet/PostProcessTasklet.java	190
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/tasklet/PostProcessUtils.java	34
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/tasklet/PreprocessResourcesTasklet.java	199
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/tasklet/PublishReportsTasklet.java	61
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/tasklet/ReadConfigurationTasklet.java	161
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/writer/BDService.java	163
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/writer/ForeignKeyService.java	183
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/writer/InputModelChunkWriter.java	5
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/writer/InputModelChunkWriterImpl.java	225
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/writer/MaxRowUpdatePolicy.java	55
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/batch/writer/WriterUtil.java	24
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/BasicEntityDao.java	61
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/BasicEntityDaoDecorator.java	42
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/CommonEntityDao.java	188
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/EntityDao.java	169
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/EntityDaoDecorator.java	68
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/EntityManager.java	493
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/IBasicEntityDao.java	10
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/IEntityDao.java	16
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/AeActionTakenDao.java	87
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/AeCausalityDao.java	86
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/AeDao.java	140
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/AeNumActionTakenDao.java	90
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/AeNumCycleDelayedDao.java	90
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/AeSeverityDao.java	94
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/AlcoholSubUseDao.java	121
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/BiomarkerDao.java	182
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/CIEventDao.java	170
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/CVOTDao.java	122
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/CerebrovascularDao.java	138
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/ChemotherapyDao.java	164
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/ConmedProcedureDao.java	142
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/ConmedScheduleDao.java	186
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/ConsentDao.java	90
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/CountryDao.java	100
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/CtDnaDao.java	110
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/DECGDao.java	144
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/DeathDao.java	136
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/DiseaseExtentDao.java	114
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/DrugDao.java	87
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/EDiaryDao.java	130
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/EGDao.java	176
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/EventTypeDao.java	106
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/ExaSeverityMapDao.java	104
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/ExacerbationDao.java	177
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/FMGeneDAO.java	129
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/GlobalNewDataDao.java	1
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/LVEFDao.java	110
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/LaboratoryDao.java	141
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/LaboratoryGroupDao.java	112
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/LiverDIDao.java	106
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/LiverRiskFactorsDao.java	118
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/LiverSSDao.java	134
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/LungFunctionDao.java	129
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/MedDosDiscDao.java	116
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/MedDosingScheduleDao.java	220
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/MedicalHistoryDao.java	124
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/MedicineDao.java	92
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/NewProtocolDeviationsDao.java	1
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/NicotineSubUseDao.java	130
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/NotCumulativeEntityDao.java	26
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/OverdoseReportDao.java	130
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/PathologyDao.java	128
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/PatientDao.java	116
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/PatientDataDao.java	125
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/PatientGroupDao.java	102
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/PerformanceStatusDao.java	106
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/PkConcentrationDao.java	129
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/PregnancyTestDao.java	114
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/PrimaryTumourLocationDao.java	103
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/ProjectDao.java	72
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/RadiotherapyDao.java	135
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/RandomisationDao.java	100
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/RecistAssessmentDao.java	129
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/RecistNonTargetLesionDao.java	114
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/RecistTargetLesionDao.java	121
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/SeriousAdverseEventDao.java	195
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/SourceDao.java	116
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/SpecimenCollectionDao.java	131
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/StackedPkResultsDao.java	139
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/StudyDao.java	279
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/SubjectCharacteristicDao.java	109
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/SurgicalHistoryDao.java	113
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/SurvivalStatusDao.java	102
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/TestDao.java	101
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/VisitDao.java	101
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/VitalDao.java	139
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/WithdrawalCompletionDao.java	110
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/aml/AdverseEventDao.java	39
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/aml/AlgorithmOutputDao.java	67
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/aml/ConmedDao.java	30
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/aml/EcgDao.java	32
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/dao/aml/LabDao.java	58
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/util/JoinDeclaration.java	35
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/util/JoinDeclarationBuilder.java	24
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/util/QueryBuilderUtil.java	92
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/util/State.java	26
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/util/TableField.java	33
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/dal/util/TableFieldBuilder.java	20
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/exception/ConfigurationException.java	9
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/exception/DataConversionException.java	15
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/exception/EntityDaoException.java	15
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/exception/InvalidDataFormatException.java	16
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/exception/MethodFailedException.java	9
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/AEGroupRuleDao.java	40
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/AEGroupValueRuleDao.java	65
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/AggregationFunctionDao.java	34
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/AuditDao.java	139
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/BasicDynamicEntityDao.java	40
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/ClinicalStudyDao.java	32
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/ColumnRuleDao.java	72
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/CommonStaticDao.java	84
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/CustomLabcodeLookupDao.java	97
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/DaoUtils.java	15
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/DeploymentEnvironmentPropertiesDao.java	28
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/DynamicFieldRuleDao.java	48
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/EntityRuleDao.java	33
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/ExcludingValueDao.java	94
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/FieldDescriptionDao.java	17
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/FileDescriptionDao.java	20
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/FileRuleDao.java	99
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/FileSectionDao.java	17
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/FileTypeDao.java	32
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/LabGroupRuleDao.java	40
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/LabGroupValueRuleDao.java	67
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/MappingRuleDao.java	84
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/ProjectGroupRuleDaoBase.java	104
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/ProjectRuleDao.java	200
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/RelationDao.java	179
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/StudyBaselineDrugDao.java	35
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/StudyRuleDao.java	374
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/SubjectGroupRuleDao.java	72
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/SubjectGroupValueDao.java	64
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/mapping/dao/impl/SubjectGroupingTypeDao.java	32
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/acuityfield/AcuityField.java	10
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/acuityfield/AcuityFieldTransformation.java	6
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/acuityfield/AcuityFieldTransformer.java	42
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/aml/AdverseEvent.java	14
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/aml/AlgorithmMetadata.java	9
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/aml/AlgorithmOutcome.java	15
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/aml/Conmed.java	13
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/aml/Ecg.java	14
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/aml/EventType.java	4
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/aml/Lab.java	16
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/aml/qtinterval/QtInput.java	72
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/aml/qtinterval/QtOutput.java	9
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/input/InputModelChunk.java	15
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/input/InputModelChunkImpl.java	43
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/FieldDelegatingEntity.java	7
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/OutputEntity.java	47
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/OutputEntityUtil.java	12
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/OutputModelChunk.java	9
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/OutputModelChunkImpl.java	37
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/PivotableEntity.java	5
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/SmartEntity.java	4
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/SplitEntity.java	5
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/AE.java	188
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/AdverseEvent.java	306
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/AeActionTaken.java	78
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/AeCausality.java	87
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/AeNumActionTaken.java	18
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/AeNumCycleDelayed.java	18
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/AeSeverity.java	80
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/AlcoholSubUse.java	27
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Biomarker.java	76
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/CIEvent.java	39
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/CVOT.java	25
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Cerebrovascular.java	29
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Chemotherapy.java	54
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/ConcomitantMedSchedule.java	46
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/ConmedProcedure.java	33
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Consent.java	17
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Country.java	53
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/CtDna.java	26
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/DECG.java	49
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Death.java	53
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/DiseaseExtent.java	24
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Drug.java	34
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/ECG.java	61
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/EDiary.java	122
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/EG.java	54
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/EventType.java	91
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/ExaSeverityMap.java	84
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Exacerbation.java	286
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/FMGene.java	94
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/GlobalNewData.java	1
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/LVEF.java	80
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Laboratory.java	41
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/LaboratoryGroup.java	50
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/LiverDI.java	21
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/LiverRiskFactors.java	25
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/LiverSS.java	29
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/LungFunction.java	55
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/MedDosDisc.java	53
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/MedDosingSchedule.java	118
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/MedicalHistory.java	142
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Medicine.java	10
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/NewProtocolDeviations.java	1
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/NicotineSubUse.java	29
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/OverdoseReport.java	29
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Pathology.java	27
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Patient.java	85
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/PatientData.java	37
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/PatientGroup.java	52
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/PerformanceStatus.java	22
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/PkConcentration.java	48
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/PregnancyTest.java	24
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/PrimaryTumourLocation.java	64
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Project.java	29
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Radiotherapy.java	43
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Randomisation.java	57
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/RecistAssessment.java	120
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/RecistNonTargetLesion.java	50
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/RecistTargetLesion.java	63
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/SeriousAdverseEvent.java	42
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Source.java	17
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/SpecimenCollection.java	115
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/StackedPkResults.java	86
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Study.java	53
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/SubjectCharacteristic.java	77
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/SurgicalHistory.java	23
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/SurvivalStatus.java	21
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Test.java	21
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/TimestampedEntity.java	218
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Visit.java	65
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/Vital.java	116
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/VitalThin.java	30
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/WidePatientGroupings.java	58
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/model/output/entities/WithdrawalCompletion.java	76
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/report/dao/impl/BasicReportDao.java	79
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/report/dao/impl/DataAlertDao.java	81
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/report/dao/impl/DataFieldReportDao.java	103
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/report/dao/impl/DataSummaryReportDao.java	118
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/report/dao/impl/DataTableReportDao.java	89
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/report/dao/impl/DataValueReportDao.java	89
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/report/dao/impl/ExceptionReportDao.java	67
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/report/dao/impl/ReportDao.java	151
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/SdtmData.java	23
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/SdtmDomain.java	193
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/SdtmEntityMapper.java	593
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/SdtmEntityProcessor.java	404
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/SdtmSuppData.java	23
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntity.java	49
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityAE.java	151
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityCE.java	16
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityCM.java	67
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityDM.java	26
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityDS.java	32
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityDV.java	26
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityEG.java	37
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityEX.java	42
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityFA.java	64
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityLB.java	41
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityMH.java	28
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityRS.java	27
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntitySV.java	16
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityTR.java	42
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityTU.java	37
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityVS.java	37
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmEntityZE.java	32
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/sdtm/entity/SdtmKey.java	34
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/service/ExecutionProfiler.java	42
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/service/QtIntervalService.java	185
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/service/VahubCacheService.java	45
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/function/AbstractFunction.java	4
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/function/AbstractGlobalFunction.java	8
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/function/Concatenate.java	10
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/function/DateAssembler.java	33
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/function/DateAssemblerDefaultTime.java	37
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/function/Functions.java	18
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/function/MaxValue.java	27
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/function/ObjectArray.java	7
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/function/StringAssembler.java	28
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/parser/AbstractParser.java	49
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/parser/BigDecimalParser.java	38
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/parser/DateParser.java	390
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/parser/DefaultParser.java	21
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/parser/DoubleParser.java	30
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/parser/IntegerParser.java	34
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/parser/LabvalueParser.java	45
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/transform/standard/CDASHDoseFrequency.java	120
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/util/ConfigurationUtil.java	62
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/util/ETLConfiguration.java	48
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/util/ETLUtil.java	9
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/util/HashUtil.java	88
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/util/LoggerDecorator.java	66
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/util/QtJsonUtil.java	78
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/util/ReflectionUtil.java	146
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/util/SerializationUtil.java	83
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/util/StringUtil.java	8
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/web/dao/CustomJobExecutionDao.java	413
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/web/service/wizard/study/StudyExcludingValueServicePartial.java	16
clns-acuity-admin/acuity-etl/src/main/java/com/acuity/visualisations/web/service/wizard/study/StudyMappingsServicePartial.java	440
clns-acuity-admin/acuity-etl/src/main/kotlin/com/acuity/visualisations/batch/tasklet/ReadHashValuesTasklet.kt	71
clns-acuity-admin/acuity-etl/src/main/resources/com/acuity/visualisations/dal/AdverseEventDataStandardisation.xml	124
clns-acuity-admin/acuity-etl/src/main/resources/com/acuity/visualisations/dal/CommonEntityDao.xml	314
clns-acuity-admin/acuity-etl/src/main/resources/com/acuity/visualisations/dal/DoseDataStandardisation.xml	147
clns-acuity-admin/acuity-etl/src/main/resources/com/acuity/visualisations/mapping/dao/impl/RelationDao.xml	46
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/aspect/LogMeAround.java	12
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/aspect/LogMeAroundAspect.java	26
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/aspect/TimeMe.java	11
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/aspect/TimeMeAspect.java	21
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/aspect/TimeMeLog.java	43
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/dal/ACUITYDaoSupport.java	22
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/dal/dao/IStudyDaoExternal.java	14
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/AeSeverityType.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/AuditAction.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/ModuleType.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/OctetString.java	39
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/StudyType.java	32
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IAEGroupRuleDao.java	3
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IAEGroupValueRuleDao.java	8
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IAggregationFunctionDao.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IAuditDao.java	12
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IBasicDynamicEntityDao.java	6
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IClinicalStudyDao.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IColumnRuleDao.java	9
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/ICommonStaticDao.java	10
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/ICustomLabcodeLookupDao.java	8
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IDeploymentEnvironmentPropertiesDao.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IDynamicFieldRuleDao.java	9
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IEntityRuleDao.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IExcludingValueDao.java	8
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IFieldDescriptionDao.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IFileDescriptionDao.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IFileRuleDao.java	9
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IFileSectionDao.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IFileTypeDao.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/ILabGroupRuleDao.java	3
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/ILabGroupValueRuleDao.java	8
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IMappingRuleDao.java	8
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IProjectGroupRuleDaoBase.java	8
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IProjectRuleDao.java	17
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IRelationDao.java	26
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IStaticEntityDao.java	6
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IStudyBaselineDrugDao.java	8
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/IStudyRuleDao.java	19
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/ISubjectGroupRuleDao.java	7
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/ISubjectGroupValueDao.java	8
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/ISubjectGroupingTypeDao.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/dao/QuerySearchWorker.java	170
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/AEGroupRule.java	11
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/AEGroupValueRule.java	32
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/AggregationFunction.java	56
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/Audit.java	35
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/AuditEntity.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/ChartTimeInterval.java	49
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/ColumnRule.java	24
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/CustomLabcodeLookup.java	31
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/DynamicEntity.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/EntityRule.java	74
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/ExcludingValue.java	44
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/FieldDescription.java	50
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/FieldRule.java	102
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/FileCategoryRule.java	18
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/FileDescription.java	79
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/FileRule.java	84
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/FileSection.java	20
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/FileStandard.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/FileType.java	64
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/GroupRuleBase.java	70
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/GroupValueBase.java	22
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/LabGroupRule.java	11
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/LabGroupValueRule.java	43
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/MappingEntity.java	12
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/MappingRule.java	94
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/ProjectRule.java	29
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/StaticEntity.java	3
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/StudyBaselineDrug.java	30
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/StudyRule.java	158
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/StudySubjectGrouping.java	41
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/SubjectGroupRule.java	11
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/SubjectGroupValueRule.java	35
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/SubjectGrouping.java	15
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/SubjectGroupingType.java	8
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/mapping/entity/View.java	10
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/dao/IBasicReportDao.java	7
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/dao/IDataAlertDao.java	7
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/dao/IDataFieldReportDao.java	8
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/dao/IDataSummaryReportDao.java	12
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/dao/IDataTableReportDao.java	8
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/dao/IDataValueReportDao.java	8
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/dao/IExceptionReportDao.java	8
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/entity/ColumnErrorType.java	8
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/entity/DataAlert.java	39
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/entity/FileReport.java	166
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/entity/RagStatus.java	17
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/entity/Report.java	19
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/entity/ReportEntity.java	4
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/entity/ReportExceptionEntity.java	54
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/entity/ReportFieldEntity.java	21
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/entity/ReportSummaryEntity.java	24
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/entity/ReportTableEntity.java	21
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/entity/ReportValueEntity.java	22
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/report/entity/ValueErrorType.java	5
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/service/IEmailService.java	9
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/service/IExecutionProfiler.java	7
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/service/Operation.java	10
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/util/ETLStudyRule.java	13
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/util/JobLauncherConsts.java	15
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/util/Pair.java	44
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/util/ReadConfigurationTaskletConsts.java	6
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/web/dao/ExtendedJobExecutionDao.java	13
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/web/dao/JobExecutionDao.java	10
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/web/entity/BatchJobExecutionKey.java	60
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/web/service/IStudyMappingsServicePartial.java	33
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/web/util/JSONDateDeserializer.java	17
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/web/util/JSONDateSerializer.java	14
clns-acuity-admin/etl-api/src/main/java/com/acuity/visualisations/web/util/Utils.java	25