$scope.loadNGSExploartory = function()

in clns-eTarget/src/main/webapp/js/app.js [2620:2697]

• 54 lines of code
• 24 McCabe index (conditional complexity)

  $scope.loadNGSExploartory = function(personID){
	  if($scope.ctdnaexploratory=='false') return;
      $http({
          method: 'GET',
          url: 'api/data.jsp?endpoint=ctdnaexploratory&personID='+personID
        }).then(function successCallback(response) {
          // Clear previous patient's results
          $scope.currentPatient.exploratory.baseline =  {};

          // Check there are specimens for the current patient
          if(typeof response.data.baseline['1'] != "undefined" && typeof response.data.baseline['1'].specimen.specimenDate.length != "undefined") {
            // Check there are results for the current patient
            if(typeof response.data.baseline['1'].runs['1'] != "undefined" && typeof response.data.baseline['1'].runs['1']['1'] != "undefined" && ((response.data.baseline['1'].runs['1']['1'].hasOwnProperty('geneSubset') && response.data.baseline['1'].runs['1']['1'].geneSubset.length > 0) || response.data.baseline['1'].runs['1']['1'].showNilResult == "true")) {
              $scope.detailSection.exploratory.noResults.message = '';
              $scope.currentPatient.exploratory.baseline = response.data.baseline;
              $scope.currentPatient.exploratory.baselineList = $scope.getArray($scope.currentPatient.exploratory.baseline);

              // Show the tables
//              $scope.detailSection.ctdnaExploratorySubs.ctdnaData = true;
//              $scope.detailSection.ctdnaExploratorySubs.ngsLib = true;
            } else {
              $scope.detailSection.exploratory.noResults.message = 'Results not available yet.';
              $scope.detailSection.exploratory.noResults.specimenDate = response.data.baseline['1'].specimen.specimenDate;
              $scope.currentPatient.exploratory.baselineList = [];
              //console.log('set specimen Date ' + $scope.detailSection.exploratory.noResults.specimenDate);

              // Hide the tables
//              $scope.detailSection.ctdnaExploratorySubs.ctdnaData = false;
//              $scope.detailSection.ctdnaExploratorySubs.ngsLib = false;
            }

          } else if (typeof response.data.baseline['1'] != "undefined" && typeof response.data.baseline['1'].runs['1']['1'] == "undefined") {
            $scope.detailSection.exploratory.noResults.message = 'Sample not taken.';
            $scope.detailSection.exploratory.noResults.specimenDate = '';
            $scope.currentPatient.exploratory.baseline = {};
            $scope.currentPatient.exploratory.listGenes = '';
          } else {
            $scope.detailSection.exploratory.noResults.message = 'No blood samples found.';
            $scope.detailSection.exploratory.noResults.specimenDate = '';
            $scope.currentPatient.exploratory.baseline = {};
            $scope.currentPatient.exploratory.listGenes = '';
          }
          
          // Nil result or analysisFailed
          if(typeof response.data.baseline['1'] != "undefined" && (typeof response.data.baseline['1'].runs['1']=='undefined' ||
        		  typeof response.data.baseline['1'].runs['1']['1']== 'undefined')){
          
          } else if(typeof response.data.baseline['1'] != "undefined" && (response.data.baseline['1'].runs['1']['1'].showNilResult == 'true' || response.data.baseline['1'].runs['1']['1'].analysisFailed== 'true' || response.data.baseline['1'].runs['1']['1'].noMutationsFound== 'true')) {
            $scope.currentPatient.exploratory.baseline = response.data.baseline;
            $scope.detailSection.exploratory.noResults.message = '';
          }
          
          if(typeof response.data.baseline['1'] != "undefined" && typeof response.data.baseline['1'].runs['1'] != "undefined"){
              Object.keys($scope.currentPatient.exploratory.baseline).forEach(function(baseline, i) {
                  $scope['active_exploratory'][baseline]={};
  				Object.keys($scope.currentPatient.exploratory.baseline[baseline].runs).forEach(function(key,index) {
  				    // key: the name of the object key
  				    // index: the ordinal position of the key within the object 
  				    $scope['active_exploratory'][baseline][key]=''+Object.keys($scope.currentPatient.exploratory.baseline[baseline].runs[key]).length;
  				});
  			});
          }
          
          for(var bl in $scope.currentPatient.exploratory.baseline){
          	if($scope.currentPatient.exploratory.baseline[bl].hasOwnProperty('runs') && 
          			(!$scope.currentPatient.exploratory.baseline[bl].runs.hasOwnProperty('1') || 
          			$scope.currentPatient.exploratory.baseline[bl].runs['1']['1'].hasOwnProperty('geneSubset') == false)){
          		$scope.currentPatient.exploratory.baseline[bl].message='Results not available yet.';
          	} else {
          		$scope.currentPatient.exploratory.baseline[bl].message='';
          	}
          }

        }, function errorCallback(response) {
          //console.log('Error fetching exploratory details: '+response.status);
        });

  }