in clns-eTarget/src/main/webapp/js/app.js [1698:1776]
$scope.genericGenomicSelection = function(type, geneObject, specimenDate, checked, timepoint) {
console.log(type);
console.log(geneObject);
console.log(checked);
if(checked) {
// Add to the table
if(geneObject.variation_type=='short_variant'){
$scope.currentPatient.significantMutations.genericGenomic[type].shortVariant.push(geneObject);
$scope.addMutationSelection(geneObject.gene_variant_id, type+'SV');
$scope.currentPatient.significantMutations.latestGenericGenomic[type].shortVariant.push(geneObject);
$scope.currentPatient.significantMutations.summery.push({gene: geneObject.geneName, description: geneObject.result, source: type, type: 'Short Variant', geneVarientID: geneObject.gene_variant_id, timepoint: timepoint});
$scope.updateMeetingOutcomeSummary(geneObject.geneName, geneObject.result, specimenDate, true, type+'SV');
} else if(geneObject.variation_type=='rearrangement'){
$scope.currentPatient.significantMutations.genericGenomic[type].rearrangement.push(geneObject);
$scope.addMutationSelection(geneObject.gene_variant_id, type+'R');
$scope.currentPatient.significantMutations.latestGenericGenomic[type].rearrangement.push(geneObject);
$scope.currentPatient.significantMutations.summery.push({gene: geneObject.gene1+' - '+geneObject.gene2, description: geneObject.description, source: type, type: 'Rearrangement', geneVarientID: geneObject.gene_variant_id, timepoint: timepoint});
$scope.updateMeetingOutcomeSummary(geneObject.gene1, geneObject.gene2, specimenDate, true, type+'R');
} else if(geneObject.variation_type=='copy_number_alteration'){
$scope.currentPatient.significantMutations.genericGenomic[type].copyNumberAlteration.push(geneObject);
$scope.addMutationSelection(geneObject.gene_variant_id, type+'CNA');
$scope.currentPatient.significantMutations.summery.push({gene: geneObject.geneName, description: geneObject.type, source: type, type: 'Copy Number Alteration', geneVarientID: geneObject.gene_variant_id, timepoint: timepoint});
$scope.currentPatient.significantMutations.latestGenericGenomic[type].copyNumberAlteration.push(geneObject);
$scope.updateMeetingOutcomeSummary(geneObject.geneName, geneObject.type, specimenDate, true, type+'CNA');
}
} else {
// Remove from the table
if(geneObject.variation_type=='short_variant'){
for(var i=0; i<$scope.currentPatient.significantMutations.genericGenomic[type].shortVariant.length;i++) {
if($scope.currentPatient.significantMutations.genericGenomic[type].shortVariant[i].gene_variant_id == geneObject.gene_variant_id) {
$scope.currentPatient.significantMutations.genericGenomic[type].shortVariant.splice(i, 1);
}
}
for(var i=0; i<$scope.currentPatient.significantMutations.latestGenericGenomic[type].shortVariant.length; i++) {
if($scope.currentPatient.significantMutations.latestGenericGenomic[type].shortVariant[i].gene_variant_id == geneObject.gene_variant_id) {
$scope.currentPatient.significantMutations.latestGenericGenomic[type].shortVariant.splice(i, 1);
}
}
$scope.deleteMutationSelection(geneObject.gene_variant_id, type+'SV');
$scope.updateMeetingOutcomeSummary(geneObject.geneName, geneObject.result, specimenDate, false, type+'SV');
} else if(geneObject.variation_type=='rearrangement'){
for(var i=0; i<$scope.currentPatient.significantMutations.latestGenericGenomic[type].rearrangement.length; i++) {
if($scope.currentPatient.significantMutations.latestGenericGenomic[type].rearrangement[i].gene_variant_id == geneObject.gene_variant_id) {
$scope.currentPatient.significantMutations.latestGenericGenomic[type].rearrangement.splice(i, 1);
}
}
for(var i=0; i<$scope.currentPatient.significantMutations.genericGenomic[type].rearrangement.length;i++) {
if($scope.currentPatient.significantMutations.genericGenomic[type].rearrangement[i].gene_variant_id == geneObject.gene_variant_id) {
$scope.currentPatient.significantMutations.genericGenomic[type].rearrangement.splice(i, 1);
}
}
$scope.deleteMutationSelection(geneObject.gene_variant_id, type+'R');
$scope.updateMeetingOutcomeSummary(geneObject.gene1, geneObject.gene2, specimenDate, false, type+'R');
}
else if(geneObject.variation_type=='copy_number_alteration'){
for(var i=0; i<$scope.currentPatient.significantMutations.latestGenericGenomic[type].copyNumberAlteration.length; i++) {
if($scope.currentPatient.significantMutations.latestGenericGenomic[type].copyNumberAlteration[i].gene_variant_id == geneObject.gene_variant_id) {
$scope.currentPatient.significantMutations.latestGenericGenomic[type].copyNumberAlteration.splice(i, 1);
}
}
for(var i=0; i<$scope.currentPatient.significantMutations.genericGenomic[type].copyNumberAlteration.length;i++) {
if($scope.currentPatient.significantMutations.genericGenomic[type].copyNumberAlteration[i].gene_variant_id == geneObject.gene_variant_id) {
$scope.currentPatient.significantMutations.genericGenomic[type].copyNumberAlteration.splice(i, 1);
}
}
$scope.deleteMutationSelection(geneObject.gene_variant_id, type+'CNA');
$scope.updateMeetingOutcomeSummary(geneObject.geneName, geneObject.type, specimenDate, false, type+'CNA');
}
for(var i=0; i<Object.keys($scope.currentPatient.significantMutations.summery).length; i++) {
if($scope.currentPatient.significantMutations.summery[i].geneVarientID == geneObject.gene_variant_id) {
$scope.currentPatient.significantMutations.summery.splice(i,1);
}
}
}
};