$scope.loadNGSSubset = function()

in clns-eTarget/src/main/webapp/js/app.js [2538:2618]
62 lines of code
22 McCabe index (conditional complexity)

  $scope.loadNGSSubset = function(personID){
	  if($scope.ctdnangs=='false') return;
      $http({
          method: 'GET',
          url: 'api/data.jsp?endpoint=ctdnangssubset&personID='+personID
        }).then(function successCallback(response) {
          // Clear previous patient's results
          $scope.currentPatient.ngsSubset.baseline =  {};
          
          if(typeof response.data.listGenes != "undefined"){
              var listGenes = response.data.listGenes;
              $scope.currentPatient.ngsSubset.listGenes = listGenes.join(', ');
          }
                  
          // Check there are specimens for the current patient
          if(typeof response.data.baseline['1'] != "undefined" && response.data.baseline['1'].specimen.specimenDate.length != 0) {
            // Check there are results for the current patient
            // sample taken but not analysed
            if(typeof response.data.baseline['1'].runs['1'] != "undefined" && typeof response.data.baseline['1'].runs['1']['1'] != "undefined" && 
            		response.data.baseline['1'].runs['1']['1'].hasOwnProperty('geneSubset')) {
              // Update the results
              $scope.detailSection.ngsSubset.noResults.message = '';
              $scope.currentPatient.ngsSubset.baseline = response.data.baseline;
              $scope.currentPatient.ngsSubset.baselineList = $scope.getArray($scope.currentPatient.ngsSubset.baseline);
            } else {
              $scope.detailSection.ngsSubset.noResults.message = 'Results not available yet.';
              $scope.detailSection.ngsSubset.noResults.specimenDate = response.data.baseline['1'].specimen.specimenDate;
              $scope.currentPatient.ngsSubset.baselineList = [];
            }

            $scope.currentPatient.ngsSubset.specimenDate = response.data.baseline['1'].specimen.specimenDate;
          } else if (typeof response.data.baseline['1'] != "undefined" && typeof response.data.baseline['1'].runs['1']['1'] == "undefined"){
            $scope.detailSection.ngsSubset.noResults.message = 'Sample not taken.';
            $scope.detailSection.ngsSubset.noResults.specimenDate = '';
            $scope.currentPatient.ngsSubset.baseline = {};

            // Hide the tables
            $scope.currentPatient.ngsSubset.ngsLib = {};
            $scope.currentPatient.ngsSubset.baselineList = [];
          } else {
            $scope.detailSection.ngsSubset.noResults.message = 'No blood samples found.';
            $scope.detailSection.ngsSubset.noResults.specimenDate = '';
            $scope.currentPatient.ngsSubset.baseline = {};
            $scope.currentPatient.ngsSubset.baselineList = [];

            // Hide the tables
            $scope.currentPatient.ngsSubset.ngsLib = {};
          }
          
          // Nil result, analysisFailed
          if(typeof response.data.baseline['1'] != "undefined" && typeof response.data.baseline['1'].runs['1']!= "undefined" && 
        		typeof response.data.baseline['1'].runs['1']['1'] != "undefined" && (response.data.baseline['1'].runs['1']['1'].showNilResult == 'true' 
        		|| response.data.baseline['1'].runs['1']['1'].noMutationsFound == 'true' || response.data.baseline['1'].runs['1']['1'].analysisFailed == 'true')) {
            $scope.currentPatient.ngsSubset.baseline = response.data.baseline;
            $scope.detailSection.ngsSubset.noResults.message = '';
          }
          if(typeof response.data.baseline['1'] != "undefined" && typeof response.data.baseline['1'].runs['1'] != "undefined"){
              Object.keys($scope.currentPatient.ngsSubset.baseline).forEach(function(baseline, i) {
                  $scope['active_ctdna'][baseline]={};
  				Object.keys($scope.currentPatient.ngsSubset.baseline[baseline].runs).forEach(function(key,index) {
  				    // key: the name of the object key
  				    // index: the ordinal position of the key within the object 
  				    
  				    $scope['active_ctdna'][baseline][key]=''+Object.keys($scope.currentPatient.ngsSubset.baseline[baseline].runs[key]).length;
  				});
  			});
          }
          for(var bl in $scope.currentPatient.ngsSubset.baseline){
          	if($scope.currentPatient.ngsSubset.baseline[bl].hasOwnProperty('runs') &&
          			(!$scope.currentPatient.ngsSubset.baseline[bl].runs.hasOwnProperty('1') || 
          			  $scope.currentPatient.ngsSubset.baseline[bl].runs['1']['1'].hasOwnProperty('geneSubset') == false)){
          		$scope.currentPatient.ngsSubset.baseline[bl].message='Results not available yet.';
          	} else {
          		$scope.currentPatient.ngsSubset.baseline[bl].message='';
          	}
          }
        }, function errorCallback(response) {
          //console.log('Error fetching ngs subset details: '+response.status);
        });

  }