Path	Lines of Code
deploy/contents/install/email-templates/contents/BILLING_QUOTA_EXCEEDING.html	25
deploy/contents/install/email-templates/contents/DATASTORAGE_LIFECYCLE_ACTION.html	26
deploy/contents/install/email-templates/contents/DATASTORAGE_LIFECYCLE_RESTORE_ACTION.html	23
deploy/contents/install/email-templates/contents/FULL_NODE_POOL.html	35
deploy/contents/install/email-templates/contents/HIGH_CONSUMED_NETWORK_BANDWIDTH.html	50
deploy/contents/install/email-templates/contents/HIGH_CONSUMED_RESOURCES.html	68
deploy/contents/install/email-templates/contents/IDLE_RUN.html	51
deploy/contents/install/email-templates/contents/IDLE_RUN_PAUSED.html	49
deploy/contents/install/email-templates/contents/IDLE_RUN_STOPPED.html	48
deploy/contents/install/email-templates/contents/INACTIVE_USERS.html	43
deploy/contents/install/email-templates/contents/LDAP_BLOCKED_POSTPONED_USERS.html	37
deploy/contents/install/email-templates/contents/LDAP_BLOCKED_USERS.html	43
deploy/contents/install/email-templates/contents/LONG_INIT.html	52
deploy/contents/install/email-templates/contents/LONG_PAUSED.html	52
deploy/contents/install/email-templates/contents/LONG_PAUSED_STOPPED.html	48
deploy/contents/install/email-templates/contents/LONG_RUNNING.html	52
deploy/contents/install/email-templates/contents/LONG_STATUS.html	52
deploy/contents/install/email-templates/contents/NEW_ISSUE.html	16
deploy/contents/install/email-templates/contents/NEW_ISSUE_COMMENT.html	16
deploy/contents/install/email-templates/contents/PIPELINE_RUN_STATUS.html	51
deploy/contents/install/email-templates/contents/STORAGE_QUOTA_EXCEEDING.html	43
deploy/contents/install/email-templates/user-statistics/group-3-table-center.html	28
deploy/contents/install/email-templates/user-statistics/group-3-table.html	28
deploy/contents/install/email-templates/user-statistics/statistics-template.html	345
deploy/contents/k8s/cp-api-db/cp-api-db-dpl-awsn.yaml	67
deploy/contents/k8s/cp-api-db/cp-api-db-dpl.yaml	67
deploy/contents/k8s/cp-api-db/cp-api-db-svc.yaml	14
deploy/contents/k8s/cp-api-srv/cp-api-srv-dpl-awsn.yaml	153
deploy/contents/k8s/cp-api-srv/cp-api-srv-dpl.yaml	175
deploy/contents/k8s/cp-api-srv/cp-api-srv-svc-external-ip.yaml	17
deploy/contents/k8s/cp-api-srv/cp-api-srv-svc-ingress.yaml	15
deploy/contents/k8s/cp-api-srv/cp-api-srv-svc-node-port.yaml	17
deploy/contents/k8s/cp-billing-srv/cp-billing-srv-dpl-awsn.yaml	47
deploy/contents/k8s/cp-billing-srv/cp-billing-srv-dpl.yaml	46
deploy/contents/k8s/cp-billing-srv/cp-billing-srv-svc.yaml	15
deploy/contents/k8s/cp-bkp-worker/cp-bkp-worker-dpl.yaml	50
deploy/contents/k8s/cp-clair/cp-clair-dpl-awsn.yaml	52
deploy/contents/k8s/cp-clair/cp-clair-dpl.yaml	54
deploy/contents/k8s/cp-clair/cp-clair-svc.yaml	15
deploy/contents/k8s/cp-dav/cp-dav-dpl-awsn.yaml	67
deploy/contents/k8s/cp-dav/cp-dav-dpl.yaml	69
deploy/contents/k8s/cp-dav/cp-dav-svc.yaml	19
deploy/contents/k8s/cp-deployment-autoscaler/cp-deployment-autoscaler-dpl-awsn.yaml	71
deploy/contents/k8s/cp-deployment-autoscaler/cp-deployment-autoscaler-dpl.yaml	68
deploy/contents/k8s/cp-dns-autoscale/cp-dns-autoscale-dpl.yaml	37
deploy/contents/k8s/cp-docker-comp/cp-docker-comp-dpl-awsn.yaml	41
deploy/contents/k8s/cp-docker-comp/cp-docker-comp-dpl.yaml	41
deploy/contents/k8s/cp-docker-comp/cp-docker-comp-svc.yaml	15
deploy/contents/k8s/cp-docker-registry/cp-docker-registry-dpl-awsn.yaml	73
deploy/contents/k8s/cp-docker-registry/cp-docker-registry-dpl.yaml	78
deploy/contents/k8s/cp-docker-registry/cp-docker-registry-svc-external-ip.yaml	17
deploy/contents/k8s/cp-docker-registry/cp-docker-registry-svc-ingress.yaml	15
deploy/contents/k8s/cp-docker-registry/cp-docker-registry-svc-node-port.yaml	17
deploy/contents/k8s/cp-edge/cp-edge-dpl-additional-region.yaml	114
deploy/contents/k8s/cp-edge/cp-edge-dpl-awsn.yaml	95
deploy/contents/k8s/cp-edge/cp-edge-dpl.yaml	116
deploy/contents/k8s/cp-edge/cp-edge-svc-elb-internal.yaml	49
deploy/contents/k8s/cp-edge/cp-edge-svc-elb.yaml	49
deploy/contents/k8s/cp-edge/cp-edge-svc-external-ip.yaml	28
deploy/contents/k8s/cp-edge/cp-edge-svc-node-port.yaml	30
deploy/contents/k8s/cp-git-sync/cp-git-sync-dpl-awsn.yaml	49
deploy/contents/k8s/cp-git-sync/cp-git-sync-dpl.yaml	49
deploy/contents/k8s/cp-git/cp-git-dpl-awsn.yaml	55
deploy/contents/k8s/cp-git/cp-git-dpl.yaml	65
deploy/contents/k8s/cp-git/cp-git-svc-external-ip.yaml	21
deploy/contents/k8s/cp-git/cp-git-svc-ingress.yaml	19
deploy/contents/k8s/cp-git/cp-git-svc-node-port.yaml	21
deploy/contents/k8s/cp-gitlab-db/cp-gitlab-db-dpl-awsn.yaml	67
deploy/contents/k8s/cp-gitlab-db/cp-gitlab-db-dpl.yaml	67
deploy/contents/k8s/cp-gitlab-db/cp-gitlab-db-svc.yaml	14
deploy/contents/k8s/cp-gitlab-reader/cp-gitlab-reader-dpl-awsn.yaml	54
deploy/contents/k8s/cp-gitlab-reader/cp-gitlab-reader-dpl.yaml	58
deploy/contents/k8s/cp-gitlab-reader/cp-gitlab-reader-svc.yaml	15
deploy/contents/k8s/cp-heapster/cp-heapster-dpl.yaml	45
deploy/contents/k8s/cp-heapster/cp-heapster-elk-dpl.yaml	47
deploy/contents/k8s/cp-heapster/cp-heapster-elk-svc.yaml	18
deploy/contents/k8s/cp-heapster/cp-heapster-svc.yaml	18
deploy/contents/k8s/cp-idp/cp-idp-dpl-awsn.yaml	63
deploy/contents/k8s/cp-idp/cp-idp-dpl.yaml	73
deploy/contents/k8s/cp-idp/cp-idp-svc-external-ip.yaml	17
deploy/contents/k8s/cp-idp/cp-idp-svc-ingress.yaml	15
deploy/contents/k8s/cp-idp/cp-idp-svc-node-port.yaml	17
deploy/contents/k8s/cp-main-service-account/cp-main-service-account.yaml	21
deploy/contents/k8s/cp-monitoring-srv/cp-monitoring-srv-dpl-awsn.yaml	39
deploy/contents/k8s/cp-monitoring-srv/cp-monitoring-srv-dpl.yaml	39
deploy/contents/k8s/cp-node-logger/cp-node-logger-ds.yaml	33
deploy/contents/k8s/cp-node-reporter/cp-node-reporter.yaml	75
deploy/contents/k8s/cp-notifier/cp-notifier-dpl-awsn.yaml	49
deploy/contents/k8s/cp-notifier/cp-notifier-dpl.yaml	49
deploy/contents/k8s/cp-prom-monitoring/kustomization.yaml	9
deploy/contents/k8s/cp-prom-monitoring/resources/prometheus-configmap.yaml	26
deploy/contents/k8s/cp-prom-monitoring/resources/prometheus-deployment.yaml	62
deploy/contents/k8s/cp-prom-monitoring/resources/prometheus-node-exporter-ds.yaml	61
deploy/contents/k8s/cp-prom-monitoring/resources/prometheus-node-exporter-service.yaml	18
deploy/contents/k8s/cp-prom-monitoring/resources/prometheus-role.yaml	34
deploy/contents/k8s/cp-prom-monitoring/resources/prometheus-service.yaml	21
deploy/contents/k8s/cp-redis/cp-redis-dpl.yaml	29
deploy/contents/k8s/cp-redis/cp-redis-svc.yaml	15
deploy/contents/k8s/cp-run-policy-manager/cp-run-policy-manager-dpl-awsn.yaml	43
deploy/contents/k8s/cp-run-policy-manager/cp-run-policy-manager-dpl.yaml	48
deploy/contents/k8s/cp-search/cp-search-elk-dpl-awsn.yaml	62
deploy/contents/k8s/cp-search/cp-search-elk-dpl.yaml	68
deploy/contents/k8s/cp-search/cp-search-elk-set.yaml	73
deploy/contents/k8s/cp-search/cp-search-elk-svc.yaml	19
deploy/contents/k8s/cp-search/cp-search-kibana-dpl.yaml	1
deploy/contents/k8s/cp-search/cp-search-srv-dpl-awsn.yaml	65
deploy/contents/k8s/cp-search/cp-search-srv-dpl.yaml	65
deploy/contents/k8s/cp-search/cp-search-srv-nfs-events-dpl-awsn.yaml	99
deploy/contents/k8s/cp-search/cp-search-srv-nfs-events-dpl.yaml	99
deploy/contents/k8s/cp-search/cp-search-srv-nfs-only-dpl-awsn.yaml	99
deploy/contents/k8s/cp-search/cp-search-srv-nfs-only-dpl.yaml	99
deploy/contents/k8s/cp-search/cp-search-srv-svc.yaml	15
deploy/contents/k8s/cp-sensitive-proxy/cp-sensitive-proxy-dpl-awsn.yaml	42
deploy/contents/k8s/cp-sensitive-proxy/cp-sensitive-proxy-dpl.yaml	42
deploy/contents/k8s/cp-sensitive-proxy/cp-sensitive-proxy-svc.yaml	15
deploy/contents/k8s/cp-share-srv/cp-share-srv-dpl-awsn.yaml	68
deploy/contents/k8s/cp-share-srv/cp-share-srv-dpl.yaml	82
deploy/contents/k8s/cp-share-srv/cp-share-srv-svc-external-ip.yaml	17
deploy/contents/k8s/cp-share-srv/cp-share-srv-svc-ingress.yaml	15
deploy/contents/k8s/cp-share-srv/cp-share-srv-svc-node-port.yaml	17
deploy/contents/k8s/cp-statping-monitor/cp-statping-monitor-dpl-awsn.yaml	57
deploy/contents/k8s/cp-statping-monitor/cp-statping-monitor-dpl.yaml	57
deploy/contents/k8s/cp-statping-monitor/cp-statping-monitor-svc-external-ip.yaml	17
deploy/contents/k8s/cp-system-fs-efs/kustomization.yaml	19
deploy/contents/k8s/cp-system-fs-efs/patches/deployment.yaml	34
deploy/contents/k8s/cp-system-fs-efs/resources/efs-pv.yaml	17
deploy/contents/k8s/cp-system-fs-efs/resources/efs-pvc.yaml	13
deploy/contents/k8s/cp-system-fs-efs/resources/efs-sc.yaml	7
deploy/contents/k8s/cp-system-fs-fsx/kustomization.yaml	8
deploy/contents/k8s/cp-system-fs-fsx/patches/deployment.yaml	19
deploy/contents/k8s/cp-system-fs-fsx/resources/fsx-pv.yaml	20
deploy/contents/k8s/cp-system-fs-fsx/resources/fsx-pvc.yaml	13
deploy/contents/k8s/cp-tinyproxy/cp-tinyproxy-dpl-awsn.yaml	44
deploy/contents/k8s/cp-tinyproxy/cp-tinyproxy-dpl.yaml	44
deploy/contents/k8s/cp-tinyproxy/cp-tinyproxy-svc.yaml	15
deploy/contents/k8s/cp-vm-monitor/cp-vm-monitor-dpl-awsn.yaml	81
deploy/contents/k8s/cp-vm-monitor/cp-vm-monitor-dpl.yaml	119
deploy/contents/k8s/kube-system/canal.yaml	736
deploy/contents/k8s/kube-system/kube-flannel.yaml	216
deploy/contents/k8s/kube-system/kubeadm-init-config.yaml	25
deploy/contents/k8s/kube-system/network-policy/internal-runs-policy.yaml	37
deploy/contents/k8s/kube-system/network-policy/sensitive-runs-policy.yaml	45
deploy/contents/sync/app/__init__.py	1
deploy/contents/sync/app/api/__init__.py	1
deploy/contents/sync/app/api/base_api.py	89
deploy/contents/sync/app/api/tool_api.py	61
deploy/contents/sync/app/api/users_api.py	47
deploy/contents/sync/app/print_utils.py	9
deploy/contents/sync/app/sync_tools.py	393
deploy/contents/sync/app/sync_users.py	131
deploy/docker/cp-api-srv/error-pages/403.html	36
deploy/docker/cp-api-srv/error-pages/404.html	24
deploy/docker/cp-api-srv/error-pages/auth.html	36
deploy/docker/cp-dav/extra/dav-extra-command.py	129
deploy/docker/cp-deployment-autoscaler/autoscale_deploy.py	217
deploy/docker/cp-deployment-autoscaler/autoscaler/__init__.py	1
deploy/docker/cp-deployment-autoscaler/autoscaler/cluster/__init__.py	1
deploy/docker/cp-deployment-autoscaler/autoscaler/cluster/kube.py	165
deploy/docker/cp-deployment-autoscaler/autoscaler/cluster/provider.py	39
deploy/docker/cp-deployment-autoscaler/autoscaler/config.py	218
deploy/docker/cp-deployment-autoscaler/autoscaler/elastic.py	110
deploy/docker/cp-deployment-autoscaler/autoscaler/exception.py	12
deploy/docker/cp-deployment-autoscaler/autoscaler/instance/__init__.py	1
deploy/docker/cp-deployment-autoscaler/autoscaler/instance/aws.py	139
deploy/docker/cp-deployment-autoscaler/autoscaler/instance/provider.py	41
deploy/docker/cp-deployment-autoscaler/autoscaler/limit.py	115
deploy/docker/cp-deployment-autoscaler/autoscaler/model.py	142
deploy/docker/cp-deployment-autoscaler/autoscaler/rule.py	47
deploy/docker/cp-deployment-autoscaler/autoscaler/scaler.py	112
deploy/docker/cp-deployment-autoscaler/autoscaler/timer.py	19
deploy/docker/cp-deployment-autoscaler/autoscaler/trigger.py	205
deploy/docker/cp-dns-hosts-sync/sync-hosts.py	299
deploy/docker/cp-edge/create_cookie_dav.lua	55
deploy/docker/cp-edge/dav-auth/index.html	65
deploy/docker/cp-edge/maintenance.lua	109
deploy/docker/cp-edge/maintenance/scripts/maintenance.py	113
deploy/docker/cp-edge/maintenance/ui/postcss.config.js	13
deploy/docker/cp-edge/maintenance/ui/src/animation.js	28
deploy/docker/cp-edge/maintenance/ui/src/fetch-config.js	8
deploy/docker/cp-edge/maintenance/ui/src/fetch-maintenance-status.js	12
deploy/docker/cp-edge/maintenance/ui/src/fetch-md.js	8
deploy/docker/cp-edge/maintenance/ui/src/index.html	15
deploy/docker/cp-edge/maintenance/ui/src/index.js	75
deploy/docker/cp-edge/maintenance/ui/src/styles.css	78
deploy/docker/cp-edge/maintenance_authenticate_user.lua	8
deploy/docker/cp-edge/maintenance_check_user.lua	31
deploy/docker/cp-edge/maintenance_process_restapi.lua	5
deploy/docker/cp-edge/maintenance_redirect_user.lua	11
deploy/docker/cp-edge/static/error.html	90
deploy/docker/cp-edge/static/search.js	485
deploy/docker/cp-edge/sync-routes.py	948
deploy/docker/cp-edge/validate_cookie.lua	144
deploy/docker/cp-edge/validate_cookie_dav.lua	174
deploy/docker/cp-edge/validate_cookie_fsbrowser.lua	209
deploy/docker/cp-edge/validate_cookie_ssh.lua	64
deploy/docker/cp-edge/validate_proxy_auth.lua	231
deploy/docker/cp-edge/wetty/app.js	382
deploy/docker/cp-edge/wetty/maintenance.js	29
deploy/docker/cp-edge/wetty/public/index.html	27
deploy/docker/cp-edge/wetty/public/ssh/index.html	43
deploy/docker/cp-edge/wetty/public/ssh/wetty.js	119
deploy/docker/cp-idp/config.js	43
deploy/docker/cp-leader-elector/election.py	114
deploy/docker/cp-leader-elector/endpoint.py	28
deploy/docker/cp-node-reporter/stats/reporter.py	155
deploy/docker/cp-run-policy-manager/policy_manager.py	317
deploy/docker/cp-run-policy-manager/templates/common-run-policy-template.yaml	16
deploy/docker/cp-run-policy-manager/templates/internal-run-policy-template.yaml	21
deploy/docker/cp-run-policy-manager/templates/sensitive-run-policy-template.yaml	17
deploy/docker/cp-tinyproxy/smtp-auth-srv.py	156
deploy/docker/cp-tools/base/aws-healthomics-workflow/omics-utils/get_private_ecr_image_name.py	26
deploy/docker/cp-tools/base/cromwell/cromwell_wrapper.py	96
deploy/docker/cp-tools/base/desktop/nomachine/serve_nxs.py	59
deploy/docker/cp-tools/base/luigi/luigi/client.cfg	2
deploy/docker/cp-tools/base/toil/cwl_inputs_parser.py	108
deploy/docker/cp-tools/base/ubi/dcv/serve_desktop.py	127
deploy/docker/cp-tools/base/ubi/nomachine/serve_nxs.py	59
deploy/docker/cp-tools/base/windows/init.ps1	44
deploy/docker/cp-tools/monitoring/common/__init__.py	2
deploy/docker/cp-tools/monitoring/common/notification_sender.py	24
deploy/docker/cp-tools/monitoring/common/utils.py	41
deploy/docker/cp-tools/monitoring/cp-dts-log-checker/dts-log-checker.py	143
deploy/docker/cp-tools/monitoring/cp-dts-log-checker/template.html	22
deploy/docker/cp-tools/monitoring/cp-dts-status-checker/dts-status-checker.py	99
deploy/docker/cp-tools/monitoring/cp-dts-status-checker/template.html	22
deploy/docker/cp-tools/monitoring/wsi-parser-monitor/monitor_wsi_parser_logs.py	173
deploy/docker/cp-tools/monitoring/wsi-parser-monitor/template.html	24
deploy/docker/cp-tools/research/cellprofiler-web-api/app/__init__.py	1
deploy/docker/cp-tools/research/cellprofiler-web-api/app/hcs.py	186
deploy/docker/cp-tools/research/cellprofiler-web-api/app/src/__init__.py	1
deploy/docker/cp-tools/research/cellprofiler-web-api/app/src/config.py	8
deploy/docker/cp-tools/research/cellprofiler-web-api/app/src/hcs_clip.py	202
deploy/docker/cp-tools/research/cellprofiler-web-api/app/src/hcs_manager.py	153
deploy/docker/cp-tools/research/cellprofiler-web-api/app/src/hcs_modules_factory.py	987
deploy/docker/cp-tools/research/cellprofiler-web-api/app/src/hcs_pipeline.py	231
deploy/docker/cp-tools/research/cellprofiler-web-api/app/src/modules/__init__.py	1
deploy/docker/cp-tools/research/cellprofiler-web-api/app/src/modules/define_results.py	432
deploy/docker/cp-tools/research/cellprofiler-web-api/app/src/z_planes_pipeline.py	82
deploy/docker/cp-tools/research/hcs-parser/parser/__init__.py	1
deploy/docker/cp-tools/research/hcs-parser/parser/process_hcs_files.py	72
deploy/docker/cp-tools/research/hcs-parser/parser/process_hcs_files_cluster.py	377
deploy/docker/cp-tools/research/hcs-parser/parser/src/__init__.py	4
deploy/docker/cp-tools/research/hcs-parser/parser/src/evals.py	189
deploy/docker/cp-tools/research/hcs-parser/parser/src/fs.py	227
deploy/docker/cp-tools/research/hcs-parser/parser/src/hcs_entity.py	72
deploy/docker/cp-tools/research/hcs-parser/parser/src/processors.py	828
deploy/docker/cp-tools/research/hcs-parser/parser/src/tags.py	274
deploy/docker/cp-tools/research/hcs-parser/parser/src/utils.py	158
deploy/docker/cp-tools/research/wsi-parser/process_files.py	1255
deploy/infra/aws/cloudformation/cloud-pipeline-deployer.yaml	607
deploy/infra/aws/install-common-win-node.ps1	290
deploy/infra/aws/terraform/cloud-native/cluster-infra/cloudwatch.tf	20
deploy/infra/aws/terraform/cloud-native/cluster-infra/data-sources.tf	38
deploy/infra/aws/terraform/cloud-native/cluster-infra/eks-cluster.tf	135
deploy/infra/aws/terraform/cloud-native/cluster-infra/fs.tf	74
deploy/infra/aws/terraform/cloud-native/cluster-infra/iam.tf	873
deploy/infra/aws/terraform/cloud-native/cluster-infra/input.tf	273
deploy/infra/aws/terraform/cloud-native/cluster-infra/kms.tf	125
deploy/infra/aws/terraform/cloud-native/cluster-infra/local.tf	189
deploy/infra/aws/terraform/cloud-native/cluster-infra/output.tf	146
deploy/infra/aws/terraform/cloud-native/cluster-infra/rds.tf	78
deploy/infra/aws/terraform/cloud-native/cluster-infra/s3.tf	54
deploy/infra/aws/terraform/cloud-native/cluster-infra/security-groups.tf	11
deploy/infra/aws/terraform/cloud-native/cluster-infra/ssh-rsa.tf	10
deploy/infra/aws/terraform/cloud-native/cluster-infra/versions.tf	8
deploy/infra/aws/terraform/cloud-native/jump-server/data-sources.tf	33
deploy/infra/aws/terraform/cloud-native/jump-server/ec2.tf	63
deploy/infra/aws/terraform/cloud-native/jump-server/iam.tf	64
deploy/infra/aws/terraform/cloud-native/jump-server/local.tf	9
deploy/infra/aws/terraform/cloud-native/jump-server/output.tf	11
deploy/infra/aws/terraform/cloud-native/jump-server/variables.tf	53
deploy/infra/aws/terraform/cloud-native/jump-server/versions.tf	17
deploy/jenkins/jenkins-jobs/build-pipectl/config.xml	71
deploy/jenkins/jenkins-jobs/deploy-dev-aws/config.xml	59
deploy/jenkins/jenkins-jobs/deploy-dev-az/config.xml	65