Path	Lines of Code
CONTRIBUTIONS.md	139
README.md	17
api/profiles/dev/application.properties	196
api/profiles/release/application.properties	110
api/src/main/resources/messages.properties	704
api/src/test/resources/__files/cadvisor.json	1917
api/src/test/resources/templates/config.json	13
api/src/test/resources/templates/default_parameters.json	39
api/src/test/resources/templates/heapster-type-mapping.json	159
api/src/test/resources/templates/test_aliases.json	8
api/src/test/resources/templates/with_image.json	8
api/src/test/resources/templates/without_image.json	7
api/src/test/resources/test-application.properties	130
billing-report-agent/gradle.properties	18
billing-report-agent/src/main/resources/application.properties	62
billing-report-agent/src/main/resources/templates/pipeline_run_billing.json	54
billing-report-agent/src/main/resources/templates/storage_billing.json	35
billing-report-agent/src/main/resources/templates/storage_requests.json	24
client/package.json	153
client/public/hcs-image-viewer/173.js.LICENSE.txt	1
client/public/hcs-image-viewer/716.js.LICENSE.txt	16
client/public/hcs-image-viewer/89.js.LICENSE.txt	1
client/public/hcs-image-viewer/LICENCE.viv.txt	17
client/public/hcs-image-viewer/hcs-image.js.LICENSE.txt	19
client/public/icons/file-extensions/ngb.svg	1
client/public/icons/providers/azure.svg	5
client/public/icons/providers/gcp-light.svg	66
client/public/icons/providers/gcp.svg	52
client/public/icons/providers/local-light.svg	3
client/public/icons/providers/local.svg	3
client/public/icons/regions/ap-northeast-1.svg	11
client/public/icons/regions/ap-northeast-2.svg	24
client/public/icons/regions/ap-northeast-3.svg	11
client/public/icons/regions/ap-south-1.svg	25
client/public/icons/regions/ap-southeast-1.svg	13
client/public/icons/regions/ca.svg	4
client/public/icons/regions/eu.svg	1
client/public/icons/regions/taiwan.svg	11
client/public/slideatlas-viewer/img/zoomin.svg	17
client/public/slideatlas-viewer/img/zoomout.svg	16
client/public/ubuntu.svg	5
client/serve.json	3
cloud-pipeline-webdav-client/package.json	71
config/checkstyle/checkstyle.xml	117
data-sharing-service/api/src/main/resources/application.properties	40
data-sharing-service/api/src/main/resources/messages.properties	29
data-sharing-service/client/package.json	100
data-sharing-service/client/public/hcs-image-viewer/173.js.LICENSE.txt	1
data-sharing-service/client/public/hcs-image-viewer/716.js.LICENSE.txt	16
data-sharing-service/client/public/hcs-image-viewer/89.js.LICENSE.txt	1
data-sharing-service/client/public/hcs-image-viewer/LICENCE.viv.txt	17
data-sharing-service/client/public/hcs-image-viewer/hcs-image.js.LICENSE.txt	19
data-sharing-service/client/public/slideatlas-viewer/img/zoomin.svg	17
data-sharing-service/client/public/slideatlas-viewer/img/zoomout.svg	16
data-transfer-service/gradle.properties	12
data-transfer-service/src/main/resources/application.properties	74
data-transfer-service/src/test/resources/test-application.properties	21
deploy/README.md	223
deploy/contents/install/cloud-configs/aws/cluster.networks.config.json	44
deploy/contents/install/cloud-configs/aws/other/storage.cors.policy.json	21
deploy/contents/install/cloud-configs/aws/preferences/instance.compute.family.names.json	4
deploy/contents/install/cloud-configs/aws/preferences/instance.limit.state.reasons.json	4
deploy/contents/install/cloud-configs/aws/preferences/instance.restart.state.reasons.json	6
deploy/contents/install/cloud-configs/az/cluster.networks.config.json	46
deploy/contents/install/cloud-configs/az/other/azure.meter.names.json	30
deploy/contents/install/cloud-configs/az/other/storage.cors.policy.json	1
deploy/contents/install/cloud-configs/gcp/cluster.networks.config.json	42
deploy/contents/install/cloud-configs/gcp/other/gcp.custom.instance.types.json	8
deploy/contents/install/cloud-configs/gcp/other/storage.bucket.iam.policy.json	1
deploy/contents/install/cloud-configs/gcp/other/storage.cors.policy.json	1
deploy/contents/install/cloud-configs/gcp/preferences/gcp.sku.mapping.json	266
deploy/contents/install/cloud-configs/gcp/prerequisites/gcp.regions.list.json	63
deploy/contents/install/email-templates/configs/BILLING_QUOTA_EXCEEDING.json	6
deploy/contents/install/email-templates/configs/DATASTORAGE_LIFECYCLE_ACTION.json	6
deploy/contents/install/email-templates/configs/DATASTORAGE_LIFECYCLE_RESTORE_ACTION.json	6
deploy/contents/install/email-templates/configs/FULL_NODE_POOL.json	6
deploy/contents/install/email-templates/configs/HIGH_CONSUMED_NETWORK_BANDWIDTH.json	8
deploy/contents/install/email-templates/configs/HIGH_CONSUMED_RESOURCES.json	8
deploy/contents/install/email-templates/configs/IDLE_RUN.json	8
deploy/contents/install/email-templates/configs/IDLE_RUN_PAUSED.json	8
deploy/contents/install/email-templates/configs/IDLE_RUN_STOPPED.json	8
deploy/contents/install/email-templates/configs/INACTIVE_USERS.json	6
deploy/contents/install/email-templates/configs/LDAP_BLOCKED_POSTPONED_USERS.json	6
deploy/contents/install/email-templates/configs/LDAP_BLOCKED_USERS.json	6
deploy/contents/install/email-templates/configs/LONG_INIT.json	8
deploy/contents/install/email-templates/configs/LONG_PAUSED.json	8
deploy/contents/install/email-templates/configs/LONG_PAUSED_STOPPED.json	8
deploy/contents/install/email-templates/configs/LONG_RUNNING.json	8
deploy/contents/install/email-templates/configs/LONG_STATUS.json	8
deploy/contents/install/email-templates/configs/NEW_ISSUE.json	8
deploy/contents/install/email-templates/configs/NEW_ISSUE_COMMENT.json	8
deploy/contents/install/email-templates/configs/PIPELINE_RUN_STATUS.json	8
deploy/contents/install/email-templates/configs/STORAGE_QUOTA_EXCEEDING.json	6
deploy/contents/install/email-templates/user-statistics/bars.svg	19
deploy/contents/install/email-templates/user-statistics/fork.svg	18
deploy/contents/install/email-templates/user-statistics/hdd.svg	15
deploy/contents/install/email-templates/user-statistics/inbox.svg	15
deploy/contents/install/email-templates/user-statistics/play.svg	14
deploy/contents/install/email-templates/user-statistics/share.svg	17
deploy/contents/install/email-templates/user-statistics/tool.svg	19
deploy/contents/install/email-templates/user-statistics/usb.svg	15
deploy/contents/install/preferences/cluster.run.parameters.mapping.json	34
deploy/contents/install/preferences/data.sharing.static.resource.settings.json	292
deploy/contents/install/preferences/faceted.filter.download.json	16
deploy/contents/install/preferences/firecloud.api.scopes.json	4
deploy/contents/install/preferences/ge.autoscaling.scale.multi.queues.template.json	116
deploy/contents/install/preferences/launch.dind.mounts.json	12
deploy/contents/install/preferences/launch.env.properties.json	21
deploy/contents/install/preferences/launch.system.parameters.json	671
deploy/contents/install/preferences/ui.git.cli.configure.template.json	1
deploy/contents/install/preferences/ui.pipe.cli.configure.template.json	7
deploy/contents/install/preferences/ui.pipe.cli.install.template.json	7
deploy/contents/k8s/cp-deployment-autoscaler/README.md	182
deploy/contents/k8s/cp-deployment-autoscaler/config.json	96
deploy/docker/cp-api-srv/config/application.properties	206
deploy/docker/cp-api-srv/folder-templates/ROLE_USER/Project/description.txt	1
deploy/docker/cp-api-srv/folder-templates/ROLE_USER/Project/template.json	27
deploy/docker/cp-billing-srv/config/application.properties	59
deploy/docker/cp-deployment-autoscaler/requirements.txt	4
deploy/docker/cp-docker-comp/config/application.properties	9
deploy/docker/cp-dts/application.properties	3
deploy/docker/cp-edge/endpoints-config/default_location_attributes.json	14
deploy/docker/cp-edge/endpoints-config/sensitive.routes.json	22
deploy/docker/cp-edge/endpoints-config/system_endpoints.json	86
deploy/docker/cp-edge/maintenance/ui/babelrc.json	7
deploy/docker/cp-edge/maintenance/ui/package-lock.json	6064
deploy/docker/cp-edge/maintenance/ui/package.json	36
deploy/docker/cp-edge/maintenance/ui/src/config.json	7
deploy/docker/cp-edge/maintenance/ui/src/templates/maintenance.md	3
deploy/docker/cp-edge/wetty/package.json	24
deploy/docker/cp-git/gitlab-runner-scripts/README.md	20
deploy/docker/cp-monitoring-srv/config/application.properties	34
deploy/docker/cp-node-reporter/stats/requirements.txt	4
deploy/docker/cp-notifier/config/application.properties	24
deploy/docker/cp-search-elk/pipelines/api_server.json	89
deploy/docker/cp-search-elk/pipelines/audit_dav.json	153
deploy/docker/cp-search-elk/pipelines/edge.json	83
deploy/docker/cp-search-elk/pipelines/tiny_proxy.json	83
deploy/docker/cp-search-elk/policies/security_log_policy.json	13
deploy/docker/cp-search-elk/templates/security_log_template.json	156
deploy/docker/cp-search/config/application.properties	133
deploy/docker/cp-share-srv/config/application.properties	42
deploy/docker/cp-statping-monitor/README.md	15
deploy/docker/cp-tests/e2e-endpoints/README.md	4
deploy/docker/cp-tests/e2e-endpoints/spec.json	7
deploy/docker/cp-tinyproxy/stats.json	9
deploy/docker/cp-tools/base/aws-healthomics-workflow/README.md	2
deploy/docker/cp-tools/base/aws-healthomics-workflow/omics-utils/public_registry_properties.json	15
deploy/docker/cp-tools/base/aws-healthomics-workflow/spec.json	6
deploy/docker/cp-tools/base/centos/cuda/README.md	19
deploy/docker/cp-tools/base/centos/cuda/spec.json	6
deploy/docker/cp-tools/base/centos/vanilla/README.md	19
deploy/docker/cp-tools/base/centos/vanilla/spec.json	6
deploy/docker/cp-tools/base/cromwell/README.md	3
deploy/docker/cp-tools/base/cromwell/options.json	5
deploy/docker/cp-tools/base/cromwell/spec.json	6
deploy/docker/cp-tools/base/desktop/noVNC/centos/cuda/README.md	16
deploy/docker/cp-tools/base/desktop/noVNC/centos/cuda/spec.json	10
deploy/docker/cp-tools/base/desktop/noVNC/centos/vanilla/README.md	14
deploy/docker/cp-tools/base/desktop/noVNC/centos/vanilla/spec.json	10
deploy/docker/cp-tools/base/desktop/noVNC/ubuntu/cuda/README.md	16
deploy/docker/cp-tools/base/desktop/noVNC/ubuntu/cuda/spec.json	10
deploy/docker/cp-tools/base/desktop/noVNC/ubuntu/vanilla/README.md	14
deploy/docker/cp-tools/base/desktop/noVNC/ubuntu/vanilla/spec.json	10
deploy/docker/cp-tools/base/desktop/nomachine/centos/cuda/README.md	26
deploy/docker/cp-tools/base/desktop/nomachine/centos/cuda/spec.json	7
deploy/docker/cp-tools/base/desktop/nomachine/centos/vanilla/README.md	25
deploy/docker/cp-tools/base/desktop/nomachine/centos/vanilla/spec.json	7
deploy/docker/cp-tools/base/desktop/nomachine/ubuntu/cuda/README.md	26
deploy/docker/cp-tools/base/desktop/nomachine/ubuntu/cuda/spec.json	7
deploy/docker/cp-tools/base/desktop/nomachine/ubuntu/vanilla/README.md	25
deploy/docker/cp-tools/base/desktop/nomachine/ubuntu/vanilla/spec.json	7
deploy/docker/cp-tools/base/jupyter-lab/cuda/README.md	19
deploy/docker/cp-tools/base/jupyter-lab/cuda/spec.json	7
deploy/docker/cp-tools/base/jupyter-lab/vanilla/README.md	18
deploy/docker/cp-tools/base/jupyter-lab/vanilla/spec.json	7
deploy/docker/cp-tools/base/jupyter/cuda/README.md	20
deploy/docker/cp-tools/base/jupyter/cuda/spec.json	7
deploy/docker/cp-tools/base/jupyter/vanilla/README.md	19
deploy/docker/cp-tools/base/jupyter/vanilla/spec.json	7
deploy/docker/cp-tools/base/luigi/README.md	45
deploy/docker/cp-tools/base/luigi/spec.json	6
deploy/docker/cp-tools/base/nextflow/README.md	13
deploy/docker/cp-tools/base/nextflow/spec.json	6
deploy/docker/cp-tools/base/rstudio/README.md	17
deploy/docker/cp-tools/base/rstudio/spec.json	7
deploy/docker/cp-tools/base/snakemake/README.md	5
deploy/docker/cp-tools/base/snakemake/spec.json	6
deploy/docker/cp-tools/base/toil/README.md	16
deploy/docker/cp-tools/base/toil/requirements.txt	95
deploy/docker/cp-tools/base/toil/spec.json	6
deploy/docker/cp-tools/base/ubuntu/cuda/README.md	16
deploy/docker/cp-tools/base/ubuntu/cuda/spec.json	6
deploy/docker/cp-tools/base/ubuntu/vanilla/README.md	16
deploy/docker/cp-tools/base/ubuntu/vanilla/spec.json	6
deploy/docker/cp-tools/base/windows/enable-windows-aws-native-cp-deploy.md	40
deploy/docker/cp-tools/base/windows/requirements.txt	3
deploy/docker/cp-tools/md/gromacs/README.md	2
deploy/docker/cp-tools/md/gromacs/spec.json	6
deploy/docker/cp-tools/md/namd/README.md	15
deploy/docker/cp-tools/md/namd/spec.json	6
deploy/docker/cp-tools/ml/keras/README.md	2
deploy/docker/cp-tools/ml/keras/spec.json	6
deploy/docker/cp-tools/ml/nlp/README.md	2
deploy/docker/cp-tools/ml/nlp/spec.json	6
deploy/docker/cp-tools/monitoring/cp-dts-log-checker/README.md	14
deploy/docker/cp-tools/monitoring/cp-dts-status-checker/README.md	10
deploy/docker/cp-tools/monitoring/wsi-parser-monitor/README.md	18
deploy/docker/cp-tools/monitoring/wsi-parser-monitor/log_search_patterns.txt	15
deploy/docker/cp-tools/ngs/bcl2fastq2/README.md	17
deploy/docker/cp-tools/ngs/bcl2fastq2/spec.json	6
deploy/docker/cp-tools/ngs/bioconductor/README.md	29
deploy/docker/cp-tools/ngs/bioconductor/spec.json	7
deploy/docker/cp-tools/ngs/cellranger/README.md	12
deploy/docker/cp-tools/ngs/cellranger/Xml.cpp.patch	22
deploy/docker/cp-tools/ngs/cellranger/spec.json	6
deploy/docker/cp-tools/ngs/msgen/README.md	6
deploy/docker/cp-tools/ngs/msgen/spec.json	6
deploy/docker/cp-tools/ngs/ngs-essential/README.md	41
deploy/docker/cp-tools/ngs/ngs-essential/spec.json	6
deploy/docker/cp-tools/research/cellprofiler-web-api/requirements.txt	19
deploy/docker/cp-tools/research/cellprofiler-web-api/spec.json	7
deploy/docker/cp-tools/research/hcs-parser/README.md	46
deploy/docker/cp-tools/research/qupath/README.md	10
deploy/docker/cp-tools/research/qupath/spec.json	7
deploy/docker/cp-tools/research/spyder/noVNC/README.md	22
deploy/docker/cp-tools/research/spyder/noVNC/spec.json	7
deploy/docker/cp-tools/research/spyder/nomachine/README.md	27
deploy/docker/cp-tools/research/spyder/nomachine/spec.json	7
deploy/docker/cp-tools/research/wsi-parser/README.md	16
deploy/docker/cp-tools/system/system-job/README.md	8
deploy/docker/cp-tools/system/system-job/spec.json	6
deploy/docker/cp-vm-monitor/config/application.properties	68
deploy/infra/aws/cloudformation/README.md	2
deploy/infra/aws/terraform/README.md	2
deploy/jenkins/jenkins-docker/plugins.txt	23
docker-comp-scan/README.md	114
docker-comp-scan/src/main/resources/application.properties	8
docker-comp-scan/src/test/resources/test-application.properties	7
e2e/cli/README.md	141
e2e/cli/autoscaling/README.md	66
e2e/cli/requirements.txt	13
e2e/gui/README.md	26
e2e/gui/password.txt	1
e2e/gui/src/test/resources/changeCMDTemplate.json	8
e2e/gui/src/test/resources/customCapabilities1.json	16
e2e/gui/src/test/resources/customCapabilities2.json	26
e2e/gui/src/test/resources/customCapabilities3.json	30
e2e/gui/src/test/resources/differentTypes.json	29
e2e/gui/src/test/resources/expectedRunLogMountDataStoragesTask.txt	4
e2e/gui/src/test/resources/expectedRunLogPython.txt	75
e2e/gui/src/test/resources/gracePeriod.json	4
e2e/gui/src/test/resources/languageToLuigi.json	9
e2e/gui/src/test/resources/languageToOther.json	9
e2e/gui/src/test/resources/languageToWDL.json	9
e2e/gui/src/test/resources/noValue.json	12
e2e/gui/src/test/resources/nonRequiredParam.json	13
e2e/gui/src/test/resources/runAsTemplate.json	14
e2e/gui/src/test/resources/runAsTemplate2.json	27
e2e/gui/src/test/resources/sample-metadata-config.json	40
e2e/gui/src/test/resources/sge_profile_configuration.txt	6
e2e/gui/src/test/resources/supportIcons.json	18
e2e/gui/src/test/resources/timeout.json	9
e2e/gui/src/test/resources/uiPipeFileBrowserRequest.json	4
e2e/prerequisites/users.json	42
elasticsearch-agent/README.md	1
elasticsearch-agent/gradle.properties	22
elasticsearch-agent/src/main/resources/application.properties	130
elasticsearch-agent/src/main/resources/message.properties	15
elasticsearch-agent/src/main/resources/templates/data_storage.json	63
elasticsearch-agent/src/main/resources/templates/docker_registry.json	50
elasticsearch-agent/src/main/resources/templates/folder.json	47
elasticsearch-agent/src/main/resources/templates/issue.json	39
elasticsearch-agent/src/main/resources/templates/metadata_entity.json	30
elasticsearch-agent/src/main/resources/templates/pipeline.json	51
elasticsearch-agent/src/main/resources/templates/pipeline_code.json	40
elasticsearch-agent/src/main/resources/templates/pipeline_run.json	71
elasticsearch-agent/src/main/resources/templates/run_configuration.json	61
elasticsearch-agent/src/main/resources/templates/storage_file.json	64
elasticsearch-agent/src/main/resources/templates/tool.json	64
elasticsearch-agent/src/main/resources/templates/tool_group.json	49
elasticsearch-agent/src/test/resources/templates/s3.json	16
elasticsearch-agent/src/test/resources/test-application.properties	70
fs-browser/README.md	428
fs-browser/fs-browser-client/README.md	37
fs-browser/fs-browser-client/package.json	119
fs-browser/fs-browser-client/public/manifest.json	9
fs-browser/fs-browser-client/public/robots.txt	3
fs-browser/requirements.txt	11
git-reader/README.md	306
gradle.properties	3
hcs-image-viewer/package-lock.json	6765
hcs-image-viewer/package.json	51
monitoring-service/README.md	1
monitoring-service/gradle.properties	26
monitoring-service/src/main/resources/application.properties	34
monitoring-service/src/main/resources/templates/cp_monitor_gpu_index.json	167
notifier/smtp/README.md	34
notifier/smtp/src/main/resources/application.properties	23
notifier/smtp/src/test/resources/test-application.properties	16
pipe-cli/README.md	47
pipe-cli/mount/requirements.txt	14
pipe-cli/pipe-omics/requirements.txt	4
pipe-cli/requirements.txt	35
pipe-cli/res/ntlmp-win-version-info.txt	43
pipe-cli/res/pipe-win-version-info.txt	43
scripts/autoscaling/requirements.txt	3
scripts/dts/README.md	95
scripts/git-role-management/requirements.txt	3
scripts/mesh/README.md	16
scripts/mesh/requirements.txt	2
scripts/nfs-roles-management/requirements.txt	1
storage-lifecycle-service/README.md	65
storage-lifecycle-service/integrational_tests/README.md	37
storage-lifecycle-service/integrational_tests/resources/testcases/case_10_removing_files_action_complete.json	79
storage-lifecycle-service/integrational_tests/resources/testcases/case_11_several_directories_only_one_eligable_eligable_for_notification.json	88
storage-lifecycle-service/integrational_tests/resources/testcases/case_12_files_not_eligable_for_action_because_of_prolongation.json	95
storage-lifecycle-service/integrational_tests/resources/testcases/case_13_files_eligable_for_action_with_prolongation.json	95
storage-lifecycle-service/integrational_tests/resources/testcases/case_14_transition_criterion_MATCHING_FILES_with_prolongation_not_eligable_to_action.json	102
storage-lifecycle-service/integrational_tests/resources/testcases/case_15_several_directories_deep_in_hierarcy.json	94
storage-lifecycle-service/integrational_tests/resources/testcases/case_16_transition_method_earliest_file_files_not_eligable.json	68
storage-lifecycle-service/integrational_tests/resources/testcases/case_17_transition_method_earliest_files_eligable_for_notification.json	82
storage-lifecycle-service/integrational_tests/resources/testcases/case_18_transition_method_earliest_files_eligable_for_action.json	89
storage-lifecycle-service/integrational_tests/resources/testcases/case_19_transition_method_one_by_one_files_eligable_for_action.json	63
storage-lifecycle-service/integrational_tests/resources/testcases/case_1_files_eligable_for_action.json	73
storage-lifecycle-service/integrational_tests/resources/testcases/case_20_transition_method_one_by_one_files_eligable_for_different_actions.json	67
storage-lifecycle-service/integrational_tests/resources/testcases/case_21_previous_run_failed_should_rerun_action.json	89
storage-lifecycle-service/integrational_tests/resources/testcases/case_22_storage_from_bucket_folder_files_eligable_for_action.json	89
storage-lifecycle-service/integrational_tests/resources/testcases/case_23_storage_from_bucket_folder_files_eligable_for_notification.json	82
storage-lifecycle-service/integrational_tests/resources/testcases/case_24_storage_from_bucket_folder_files_not_eligable_for_action_because_of_prolongation.json	95
storage-lifecycle-service/integrational_tests/resources/testcases/case_25_wide_glob_from_root_several_directories_deep_in_hierarcy.json	94
storage-lifecycle-service/integrational_tests/resources/testcases/case_26_rule_without_object_glob_eligable_for_notification.json	95
storage-lifecycle-service/integrational_tests/resources/testcases/case_27_rule_without_object_glob_files_eligable_for_action.json	88
storage-lifecycle-service/integrational_tests/resources/testcases/case_28_rule_without_object_glob_with_wide_path_glob_files_eligable_for_action.json	112
storage-lifecycle-service/integrational_tests/resources/testcases/case_29_files_action_completed_and_eligable_for_several_next_actions.json	105
storage-lifecycle-service/integrational_tests/resources/testcases/case_2_files_eligable_for_notification.json	82
storage-lifecycle-service/integrational_tests/resources/testcases/case_30_files_action_completed_and_new_files_eligable_for_action.json	93
storage-lifecycle-service/integrational_tests/resources/testcases/case_31_files_action_completed_and_new_files_not_eligable_for_action.json	93
storage-lifecycle-service/integrational_tests/resources/testcases/case_32_files_eligable_for_all_action_but_first_will_be_piked_up.json	85
storage-lifecycle-service/integrational_tests/resources/testcases/case_33_transition_criterion_MATCHING_FILES_several_file_groups_eligable_to_action.json	94
storage-lifecycle-service/integrational_tests/resources/testcases/case_34_eligable_for_several_notifications.json	99
storage-lifecycle-service/integrational_tests/resources/testcases/case_35_not_all_files_eligable_to_action.json	89
storage-lifecycle-service/integrational_tests/resources/testcases/case_36_MATCHING_FILES_not_all_files_eligable_to_action.json	82
storage-lifecycle-service/integrational_tests/resources/testcases/case_37_with_transition_date_action_completed_even_if_file_in_standard_exists_because_was_added_after.json	89
storage-lifecycle-service/integrational_tests/resources/testcases/case_38_files_with_size_0_are_not_eligable_for_action.json	56
storage-lifecycle-service/integrational_tests/resources/testcases/case_39_files_with_size_0_will_not_fail_execution_if_still_in_standard_class.json	79
storage-lifecycle-service/integrational_tests/resources/testcases/case_3_files_eligable_for_action.json	89
storage-lifecycle-service/integrational_tests/resources/testcases/case_41_transition_method_ONE_BY_ONE_files_eligable_for_actions_in_different_hierarchy.json	65
storage-lifecycle-service/integrational_tests/resources/testcases/case_42_transition_method_ONE_BY_ONE_glob_matching_all_and_files_eligable_for_actions.json	65
storage-lifecycle-service/integrational_tests/resources/testcases/case_43_transition_method_ONE_BY_ONE_files_eligable_for_actions_in_different_hierarchy_path_glob_with_prefix.json	65
storage-lifecycle-service/integrational_tests/resources/testcases/case_4_files_action_completed.json	89
storage-lifecycle-service/integrational_tests/resources/testcases/case_5_files_action_completed_and_eligable_for_next_notification.json	99
storage-lifecycle-service/integrational_tests/resources/testcases/case_6_files_action_completed_and_eligable_for_next_action.json	105
storage-lifecycle-service/integrational_tests/resources/testcases/case_7_two_rules_one_to_notify_one_to_perform_action.json	125
storage-lifecycle-service/integrational_tests/resources/testcases/case_8_transition_criterion_MATCHING_FILES_eligable_to_notify.json	88
storage-lifecycle-service/integrational_tests/resources/testcases/case_9_transition_criterion_MATCHING_FILES_eligable_to_action.json	96
vm-monitor/README.md	12
vm-monitor/gradle.properties	29
vm-monitor/src/main/resources/application.properties	78
vm-monitor/src/test/resources/test-application.properties	15
workflows/pipe-common/README.md	19
workflows/pipe-demo/ngs/batch/config.json	72
workflows/pipe-demo/ngs/batch/spec.json	11
workflows/pipe-demo/ngs/demultiplex/config.json	29
workflows/pipe-demo/ngs/demultiplex/spec.json	11
workflows/pipe-demo/ngs/msgen/config.json	63
workflows/pipe-demo/ngs/msgen/spec.json	9
workflows/pipe-demo/ngs/mutect2-gatk/config.json	103
workflows/pipe-demo/ngs/mutect2-gatk/spec.json	11
workflows/pipe-demo/ngs/simple-variant-calling/config.json	39
workflows/pipe-demo/ngs/simple-variant-calling/spec.json	11
workflows/pipe-demo/ngs/wes-analysis/config.json	67
workflows/pipe-demo/ngs/wes-analysis/spec.json	11
workflows/pipe-templates/__AWS_HEALTHOMICS/AWS-HealthOmics-Workflow/config.json	32
workflows/pipe-templates/__AWS_HEALTHOMICS/AWS-HealthOmics-Workflow/description.txt	1
workflows/pipe-templates/__COMMON/cwl/config.json	32
workflows/pipe-templates/__COMMON/cwl/description.txt	1
workflows/pipe-templates/__COMMON/empty/config.json	12
workflows/pipe-templates/__COMMON/empty/description.txt	1
workflows/pipe-templates/__COMMON/luigi/config.json	15
workflows/pipe-templates/__COMMON/luigi/description.txt	1
workflows/pipe-templates/__COMMON/nextflow/config.json	13
workflows/pipe-templates/__COMMON/nextflow/description.txt	1
workflows/pipe-templates/__COMMON/python/config.json	13
workflows/pipe-templates/__COMMON/python/description.txt	1
workflows/pipe-templates/__COMMON/shell/config.json	13
workflows/pipe-templates/__COMMON/shell/description.txt	1
workflows/pipe-templates/__COMMON/snakemake/config.json	18
workflows/pipe-templates/__COMMON/snakemake/description.txt	1
workflows/pipe-templates/__COMMON/wdl/config.json	13
workflows/pipe-templates/__COMMON/wdl/description.txt	1
workflows/pipe-templates/__SYSTEM/data_loader/config.json	56
workflows/pipe-templates/__SYSTEM/system_jobs/config.json	68