private static Stream initParametersNAAll()

in src/integrationTest/java/com/epam/fonda/DnaAmpliconVarBamIntegrationTest.java [104:161]
58 lines of code
1 McCabe index (conditional complexity)

    private static Stream<Arguments> initParametersNAAll() {
        return Stream.of(
                of(DNA_AMPLICON_VAR_BAM_G_SINGLE_ALL_TASKS, DNA_AMPLICON_VAR_BAM_S_SINGLE,
                        format("%s%s%s",
                                OUTPUT_SH_SUFFIX, DNA_AMPLICON_VAR_BAM_FREEBAYES, FOR_GA_5_SH_SUFFIX),
                        format("%s%s%s",
                                CONTROL_SAMPLE_NAALL_TASKS_SUFFIX, DNA_AMPLICON_VAR_BAM_FREEBAYES,
                                FOR_GA_5_TEMPLATE_SUFFIX)),
                of(DNA_AMPLICON_VAR_BAM_G_SINGLE_ALL_TASKS, DNA_AMPLICON_VAR_BAM_S_SINGLE,
                        format("%s%s%s",
                                OUTPUT_SH_SUFFIX, DNA_AMPLICON_VAR_BAM_GATK_HAPLOTYPE_CALLER, FOR_GA_5_SH_SUFFIX),
                        format("%s%s%s",
                                CONTROL_SAMPLE_NAALL_TASKS_SUFFIX, DNA_AMPLICON_VAR_BAM_GATK_HAPLOTYPE_CALLER,
                                FOR_GA_5_TEMPLATE_SUFFIX)),
                of(DNA_AMPLICON_VAR_BAM_G_SINGLE_ALL_TASKS, DNA_AMPLICON_VAR_BAM_S_SINGLE,
                        format("%s%s%s",
                                OUTPUT_SH_SUFFIX, DNA_AMPLICON_VAR_BAM_LOFREQ, FOR_GA_5_SH_SUFFIX),
                        format("%s%s%s",
                                CONTROL_SAMPLE_NAALL_TASKS_SUFFIX, DNA_AMPLICON_VAR_BAM_LOFREQ,
                                FOR_GA_5_TEMPLATE_SUFFIX)),
                of(DNA_AMPLICON_VAR_BAM_G_SINGLE_ALL_TASKS, DNA_AMPLICON_VAR_BAM_S_SINGLE,
                        format("%s%s%s",
                                OUTPUT_SH_SUFFIX, DNA_AMPLICON_VAR_BAM_MUTECT_1, FOR_GA_5_SH_SUFFIX),
                        format("%s%s%s",
                                CONTROL_SAMPLE_NAALL_TASKS_SUFFIX, DNA_AMPLICON_VAR_BAM_MUTECT_1,
                                FOR_GA_5_TEMPLATE_SUFFIX)),
                of(DNA_AMPLICON_VAR_BAM_G_SINGLE_ALL_TASKS, DNA_AMPLICON_VAR_BAM_S_SINGLE,
                        format("%s%s%s",
                                OUTPUT_SH_SUFFIX, DNA_AMPLICON_VAR_BAM_SCALPEL, FOR_GA_5_SH_SUFFIX),
                        format("%s%s%s",
                                CONTROL_SAMPLE_NAALL_TASKS_SUFFIX, DNA_AMPLICON_VAR_BAM_SCALPEL,
                                FOR_GA_5_TEMPLATE_SUFFIX)),
                of(DNA_AMPLICON_VAR_BAM_G_SINGLE_ALL_TASKS, DNA_AMPLICON_VAR_BAM_S_SINGLE,
                        format("%s%s%s",
                                OUTPUT_SH_SUFFIX, DNA_AMPLICON_VAR_BAM_STRELKA_2, FOR_GA_5_SH_SUFFIX),
                        format("%s%s%s",
                                CONTROL_SAMPLE_NAALL_TASKS_SUFFIX, DNA_AMPLICON_VAR_BAM_STRELKA_2,
                                FOR_GA_5_TEMPLATE_SUFFIX)),
                of(DNA_AMPLICON_VAR_BAM_G_SINGLE_ALL_TASKS, DNA_AMPLICON_VAR_BAM_S_SINGLE,
                        format("%s%s%s",
                                OUTPUT_SH_SUFFIX, DNA_AMPLICON_VAR_BAM_VARDICT, FOR_GA_5_SH_SUFFIX),
                        format("%s%s%s",
                                CONTROL_SAMPLE_NAALL_TASKS_SUFFIX, DNA_AMPLICON_VAR_BAM_VARDICT,
                                FOR_GA_5_TEMPLATE_SUFFIX)),
                of(DNA_AMPLICON_VAR_BAM_G_SINGLE_ALL_TASKS, DNA_AMPLICON_VAR_BAM_S_SINGLE,
                        format("%s%s%s",
                                OUTPUT_SH_SUFFIX, DNA_AMPLICON_VAR_BAM_VARIANT_DETECTION, FOR_GA_5_SH_SUFFIX),
                        format("%s%s%s",
                                CONTROL_SAMPLE_NAALL_TASKS_SUFFIX, DNA_AMPLICON_VAR_BAM_VARIANT_DETECTION,
                                FOR_GA_5_TEMPLATE_SUFFIX)),
                of(DNA_AMPLICON_VAR_BAM_G_SINGLE_ALL_TASKS, DNA_AMPLICON_VAR_BAM_S_SINGLE,
                        format("%s%s%s",
                                OUTPUT_SH_SUFFIX, DNA_AMPLICON_VAR_BAM_MERGE_MUTATION, FOR_COHORT_ANALYSIS_SH_SUFFIX),
                        format("%s%s%s",
                                CONTROL_SAMPLE_NAALL_TASKS_SUFFIX, DNA_AMPLICON_VAR_BAM_MERGE_MUTATION,
                                FOR_COHORT_ANALYSIS_TEMPLATE_SUFFIX))
        );
    }