private static Stream initParameters()

in src/integrationTest/java/com/epam/fonda/RnaCaptureVarFastqIntegrationTest.java [46:79]
34 lines of code
1 McCabe index (conditional complexity)

    private static Stream<Arguments> initParameters() {
        return Stream.of(
                Arguments.of(
                        format("%s/gAllTasksWithoutTrimmomaticPaired.txt", RNA_CAPTURE_VAR_FASTQ_DIR),
                        format("%s/sPaired.txt", RNA_CAPTURE_VAR_FASTQ_DIR),
                        format("%s/RnaCaptureVar_Fastq_alignment_for_GA5_analysis.sh", OUTPUT_SH_FILES_DIR),
                        format("%s/%s/rnaCaptureVar_Fastq_alignment_for_GA5_analysis_template",
                                RNA_CAPTURE_VAR_FASTQ_DIR, ALL_TASKS_WITHOUT_TRIMMOMATIC_PAIRED)),
                Arguments.of(
                        format("%s/gAllTasksWithoutTrimmomaticPaired.txt", RNA_CAPTURE_VAR_FASTQ_DIR),
                        format("%s/sPaired.txt", RNA_CAPTURE_VAR_FASTQ_DIR),
                        format("%s/RnaCaptureVar_Fastq_gatkHaplotypeCaller_for_GA5_analysis.sh", OUTPUT_SH_FILES_DIR),
                        format("%s/%s/rnaCaptureVar_Fastq_gatkHaplotypeCaller_for_GA5_analysis_template",
                                RNA_CAPTURE_VAR_FASTQ_DIR, ALL_TASKS_WITHOUT_TRIMMOMATIC_PAIRED)),
                Arguments.of(
                        format("%s/gAllTasksWithoutTrimmomaticPaired.txt", RNA_CAPTURE_VAR_FASTQ_DIR),
                        format("%s/sPaired.txt", RNA_CAPTURE_VAR_FASTQ_DIR),
                        format("%s/RnaCaptureVar_Fastq_mergeMutation_for_cohort_analysis.sh", OUTPUT_SH_FILES_DIR),
                        format("%s/%s/rnaCaptureVar_Fastq_mergeMutation_for_cohort_analysis_template",
                                RNA_CAPTURE_VAR_FASTQ_DIR, ALL_TASKS_WITHOUT_TRIMMOMATIC_PAIRED)),
                Arguments.of(
                        format("%s/gAllTasksWithoutTrimmomaticPaired.txt", RNA_CAPTURE_VAR_FASTQ_DIR),
                        format("%s/sPaired.txt", RNA_CAPTURE_VAR_FASTQ_DIR),
                        format("%s/RnaCaptureVar_Fastq_qcsummary_for_cohort_analysis.sh", OUTPUT_SH_FILES_DIR),
                        format("%s/%s/rnaCaptureVar_Fastq_qcsummary_for_cohort_analysis_template",
                                RNA_CAPTURE_VAR_FASTQ_DIR, ALL_TASKS_WITHOUT_TRIMMOMATIC_PAIRED)),
                Arguments.of(
                        format("%s/gTrimmomaticStarPaired.txt.txt", RNA_CAPTURE_VAR_FASTQ_DIR),
                        format("%s/sPaired.txt", RNA_CAPTURE_VAR_FASTQ_DIR),
                        format("%s/RnaCaptureVar_Fastq_alignment_for_GA5_analysis.sh", OUTPUT_SH_FILES_DIR),
                        format("%s/%s/rnaCaptureVar_Fastq_alignment_for_GA5_analysis_template",
                                RNA_CAPTURE_VAR_FASTQ_DIR, TRIMMOMATIC_STAR_PAIRED))
        );
    }