private String getValueForSpecificVar()

in src/main/java/com/epam/fonda/tools/impl/QcSummary.java [138:167]

• 28 lines of code
• 10 McCabe index (conditional complexity)

    private String getValueForSpecificVar(String workflow, Variable variable, String libraryType) {
        final PipelineType pipelineType = PipelineType.getByName(workflow);
        Map<Enum, String> map = new HashMap<>();
        map.put(Variable.TASK, "alignment");

        switch (pipelineType) {
            case DNA_CAPTURE_VAR_FASTQ:
            case DNA_WGS_VAR_FASTQ:
            case DNA_AMPLICON_VAR_FASTQ:
                map.put(Variable.TASK, "postalignment");
                if (!matchesExomeLibraryTypeCondition(libraryType) &&
                        !matchesCaptureLibraryTypeCondition(libraryType)) {
                    break;
                }
                map.put(Variable.TAG, "Merge DNA QC");
                break;
            case RNA_EXPRESSION_FASTQ:
            case RNA_CAPTURE_VAR_FASTQ:
            case SC_RNA_EXPRESSION_FASTQ:
                map.put(Variable.TAG, "Merge RNA QC");
                break;
            case SC_RNA_EXPRESSION_CELLRANGER_FASTQ:
                map.put(Variable.TAG, "Cellranger count");
                break;
            default:
                break;
        }

        return map.get(variable);
    }