in src/main/java/com/epam/fonda/tools/impl/RnaAnalysis.java [71:86]
private Set<String> filterToolset(Flag flag) {
Set<String> toolset = new HashSet<>();
if (!flag.isConversion()) {
return toolset;
}
if (flag.isRsem()) {
toolset.add(RSEM_TOOL);
}
if (flag.isCufflinks()) {
toolset.add(CUFFLINKS_TOOL);
}
if (flag.isStringtie()) {
toolset.add(STRINGTIE_TOOL);
}
return toolset;
}