def launch()

in src/main/scripts/launcher.py [0:0]
34 lines of code
17 McCabe index (conditional complexity)

    def launch(global_config, study_config, sync, java_path, mode='', jar_folder=None, verbose=False, master=False):
        """
            Entry point to workflow launching
        """
        if verbose:
            logging.basicConfig(format=LOG_FORMAT, level=logging.DEBUG)
        else:
            logging.basicConfig(format=LOG_FORMAT)
        if not jar_folder:
            if os.environ.get('FONDA_HOME') is not None:
                jar_folder = os.environ['FONDA_HOME'] if str(jar_folder).endswith("/") \
                    else os.environ['FONDA_HOME'] + '/'
            else:
                jar_folder = "{}/build/libs/".format(Path(__file__).parent.parent.parent.parent.absolute())
                if not os.path.isfile('{}fonda-{}.jar'.format(jar_folder, Launcher.FONDA_VERSION)):
                    jar_folder = "{}/".format(Path(__file__).parent.parent.parent.absolute())
                    if not os.path.isfile('{}fonda-{}.jar'.format(jar_folder, Launcher.FONDA_VERSION)):
                        logging.error('Jar file was not found! Please put the jar file in a folder ' + jar_folder)
                        sys.exit(2)
        elif jar_folder is not None and not str(jar_folder).endswith("/"):
            jar_folder += "/"
        sync = '-sync' if sync is None or sync == 'true' else ''
        master_flag = '-master' if master else ''
        cmd = "{} -jar {}fonda-{}.jar -global_config {} -study_config {} {} {} {} " \
            .format(java_path, jar_folder, Launcher.FONDA_VERSION, global_config, study_config, sync, mode, master_flag)
        proc = subprocess.Popen(cmd.split(), stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
        while True:
            output = proc.stdout.readline().decode()
            if output == '' and proc.poll() is not None:
                break
            if output:
                logging.debug(output.rstrip())
        exit_code = proc.wait()
        if exit_code != 0:
            exec_err_msg = 'Command \'%s\' execution has failed.\n Exit code: %s' % (cmd, exit_code)
            raise RuntimeError(exec_err_msg)
        logging.debug('Exit code: ' + str(exit_code))