id: 1
unit: public static void init()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/Configuration.java
start line: 103
end line: 151
size: 44 LOC
McCabe index: 8
number of parameters: 0

id: 2
unit: Optional loadIndex()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/IndexLoader.java
start line: 57
end line: 81
size: 21 LOC
McCabe index: 3
number of parameters: 1

id: 3
unit: private void produceTasks()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/parallel/ParallelPartsLoader.java
start line: 104
end line: 125
size: 21 LOC
McCabe index: 5
number of parameters: 0

id: 4
unit: public SamReader open()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3ReaderFactory.java
start line: 56
end line: 78
size: 18 LOC
McCabe index: 2
number of parameters: 1

id: 5
unit: private Optional getByteArray()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/parallel/PartReader.java
start line: 77
end line: 96
size: 17 LOC
McCabe index: 4
number of parameters: 1

id: 6
unit: boolean isFileExisting()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3Client.java
start line: 76
end line: 91
size: 14 LOC
McCabe index: 4
number of parameters: 1

id: 7
unit: static void printSummary()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/PerformanceMonitor.java
start line: 88
end line: 103
size: 14 LOC
McCabe index: 1
number of parameters: 0

id: 8
unit: private AmazonS3 configureAWS()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3Client.java
start line: 105
end line: 118
size: 13 LOC
McCabe index: 2
number of parameters: 0

id: 9
unit: private void recreateInnerStream()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3SeekableStream.java
start line: 62
end line: 75
size: 13 LOC
McCabe index: 3
number of parameters: 0

id: 10
unit: public void seek()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3SeekableStream.java
start line: 93
end line: 107
size: 13 LOC
McCabe index: 2
number of parameters: 1

id: 11
unit: public static void resetToDefault()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/Configuration.java
start line: 178
end line: 189
size: 12 LOC
McCabe index: 1
number of parameters: 0

id: 12
unit: Optional providedIndexURI()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/IndexLoader.java
start line: 88
end line: 96
size: 9 LOC
McCabe index: 2
number of parameters: 0

id: 13
unit: Optional nearbyIndexURI()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/IndexLoader.java
start line: 104
end line: 113
size: 9 LOC
McCabe index: 1
number of parameters: 1

id: 14
unit: boolean credentialsExist()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3Client.java
start line: 60
end line: 68
size: 9 LOC
McCabe index: 2
number of parameters: 0

id: 15
unit: private int getNextByte()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/parallel/S3ParallelStream.java
start line: 65
end line: 73
size: 9 LOC
McCabe index: 2
number of parameters: 0

id: 16
unit: private void putEndTasksSignal()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/parallel/ParallelPartsLoader.java
start line: 127
end line: 135
size: 8 LOC
McCabe index: 2
number of parameters: 0

id: 17
unit: public static ScheduledExecutorService getDaemonScheduledExecutorService()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/parallel/ExecutorsFactory.java
start line: 40
end line: 47
size: 8 LOC
McCabe index: 1
number of parameters: 1

id: 18
unit: private static int getIntProperty()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/Configuration.java
start line: 159
end line: 166
size: 8 LOC
McCabe index: 2
number of parameters: 2

id: 19
unit: static void start()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/PerformanceMonitor.java
start line: 76
end line: 83
size: 8 LOC
McCabe index: 1
number of parameters: 0

id: 20
unit: public InputStream loadFromTo()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3InputStreamFactory.java
start line: 53
end line: 60
size: 8 LOC
McCabe index: 1
number of parameters: 3

id: 21
unit: public S3ParallelStream()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/parallel/S3ParallelStream.java
start line: 47
end line: 54
size: 7 LOC
McCabe index: 1
number of parameters: 4

id: 22
unit: public int read()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/parallel/S3ParallelStream.java
start line: 57
end line: 63
size: 7 LOC
McCabe index: 2
number of parameters: 0

id: 23
unit: void cancelLoading()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/parallel/ParallelPartsLoader.java
start line: 146
end line: 151
size: 6 LOC
McCabe index: 1
number of parameters: 0

id: 24
unit: long getFileSize()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3Client.java
start line: 99
end line: 103
size: 5 LOC
McCabe index: 1
number of parameters: 1

id: 25
unit: static ExecutorService getTasksExecutor()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/parallel/ExecutorsFactory.java
start line: 49
end line: 53
size: 5 LOC
McCabe index: 1
number of parameters: 0

id: 26
unit: public long skip()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3SeekableStream.java
start line: 144
end line: 149
size: 5 LOC
McCabe index: 1
number of parameters: 1

id: 27
unit: public S3Client()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3Client.java
start line: 51
end line: 54
size: 4 LOC
McCabe index: 1
number of parameters: 0

id: 28
unit: public void close()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/parallel/S3ParallelStream.java
start line: 80
end line: 83
size: 4 LOC
McCabe index: 1
number of parameters: 0

id: 29
unit: public void close()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3SeekableStream.java
start line: 120
end line: 123
size: 4 LOC
McCabe index: 1
number of parameters: 0

id: 30
unit: AmazonS3 getAws()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3Client.java
start line: 120
end line: 122
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 31
unit: private void emergencyCancelLoading()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/parallel/ParallelPartsLoader.java
start line: 153
end line: 155
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 32
unit: private boolean chunckEndReached()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/parallel/S3ParallelStream.java
start line: 75
end line: 77
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 33
unit: public long length()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3SeekableStream.java
start line: 78
end line: 80
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 34
unit: public long position()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3SeekableStream.java
start line: 83
end line: 85
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 35
unit: public int read()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3SeekableStream.java
start line: 110
end line: 112
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 36
unit: public int read()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3SeekableStream.java
start line: 115
end line: 117
size: 3 LOC
McCabe index: 1
number of parameters: 3

id: 37
unit: public boolean eof()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3SeekableStream.java
start line: 126
end line: 128
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 38
unit: public String getSource()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3SeekableStream.java
start line: 131
end line: 133
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 39
unit: static Optional getIndexCustomUrl()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/Configuration.java
start line: 79
end line: 81
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 40
unit: public static int getNumberOfConnections()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/Configuration.java
start line: 83
end line: 85
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 41
unit: public static int getMaxDownloadPartSize()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/Configuration.java
start line: 87
end line: 89
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 42
unit: public static int getMinDownloadPartSize()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/Configuration.java
start line: 91
end line: 93
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 43
unit: static
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/Configuration.java
start line: 95
end line: 97
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 44
unit: public static int getCustomRetryCount()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/Configuration.java
start line: 171
end line: 173
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 45
unit: static void logLoadedData()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/PerformanceMonitor.java
start line: 61
end line: 63
size: 3 LOC
McCabe index: 1
number of parameters: 1

id: 46
unit: static void logRequest()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/PerformanceMonitor.java
start line: 68
end line: 70
size: 3 LOC
McCabe index: 1
number of parameters: 0

id: 47
unit: public S3InputStreamFactory()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/S3InputStreamFactory.java
start line: 40
end line: 42
size: 3 LOC
McCabe index: 1
number of parameters: 1

id: 48
unit: private Configuration()
file: S3HtsjdkPlugin/src/main/java/com/epam/cmbi/s3/Configuration.java
start line: 75
end line: 77
size: 2 LOC
McCabe index: 1
number of parameters: 0