packages/miew/src/Miew.js (4 lines):
	- line 1883: // FIXME: All new settings retrieved from server are applied after the loading is complete. However, we need some
	- line 1998: if (!opts.animation) { // FIXME: sometimes it is set AFTERWARDS!
	- line 3914: // FIXME should only store main pivot offset in preset
	- line 4231: // export namespaces // TODO: WIP: refactoring external interface


packages/miew/src/io/parsers/PDBParser.js (3 lines):
	- line 136: // FIXME: This function is redundant, CONECT records always follow ATOM and HETATM. Build the map online.
	- line 196: const role = Element.Role[name]; // FIXME: Maybe should use type as additional index (" CA " vs. "CA  ")
	- line 322: const structureName = stream.readString(12, 14).trim(); // FIXME: LString(3) forbids trim()


packages/miew-app/src/components/menu/titlebar/Titlebar.jsx (2 lines):
	- line 19: // TODO move title to separate componen
	- line 20: // TODO solve the font for the whole app


packages/miew/src/io/parsers/CIFParser.js (2 lines):
	- line 395: // TODO think about last condition
	- line 451: // TODO think about last condition


packages/miew/src/chem/Complex.js (2 lines):
	- line 571: if (opts.detectAromaticLoops) { // TODO remove this condition clause, it is for debug purposes only!
	- line 572: marker.detectCycles(); // TODO add conditional detection


packages/miew/src/gfx/geometries/QuickSurfGeometry.js (2 lines):
	- line 42: // TODO is densityMap and volTexMap initialized?
	- line 106: // TODO check for volTexMap routine?


packages/miew/src/utils.js (1 line):
	- line 301: // TODO add processing for tree structure


packages/miew/src/gfx/shaders/UberMaterial.js (1 line):
	- line 84: zClipCoef: 2.0, // use for Surfs clipping (mesh param, isn't used in shader)  FIXME move to representation param


packages/miew/src/chem/Chain.js (1 line):
	- line 97: // TODO: skip invalid residues


packages/miew/src/io/parsers/pdb/Remark350.js (1 line):
	- line 43: // TODO: assert(matrixIndex === assembly.matrices.length + 1);


packages/miew/src/chem/HBondInfo.js (1 line):
	- line 158: // TODO Support hydrogen defined in complex


packages/miew/src/chem/Volume.js (1 line):
	- line 155: // TODO Check for intended bug in VMD (min is zero)


packages/miew/src/settings.js (1 line):
	- line 648: preset: 'default', // TODO: remove 'preset' from settings, implement autodetection


packages/miew/src/io/parsers/pdb/Remark290.js (1 line):
	- line 34: // TODO: assert(matrixIndex === this.matrices.length + 1);


packages/miew/src/gfx/geometries/SphereCollisionGeo.js (1 line):
	- line 39: // TODO raycast with bounding sphere? How to deal with updates?


packages/miew/src/chem/Bond.js (1 line):
	- line 80: // TODO refactor this piece of an art?


packages/miew/src/ComplexVisual.js (1 line):
	- line 672: // TODO make this code obsolete, accessing editor is bad