Path	Lines of Code
modules/cealign/src/ccealignmodule.cpp	391
modules/cealign/src/ce_types.h	18
modules/cealign/src/tnt/jama_cholesky.h	139
modules/cealign/src/tnt/jama_eig.h	684
modules/cealign/src/tnt/jama_lu.h	184
modules/cealign/src/tnt/jama_qr.h	188
modules/cealign/src/tnt/jama_svd.h	396
modules/cealign/src/tnt/tnt.h	23
modules/cealign/src/tnt/tnt_array1d.h	197
modules/cealign/src/tnt/tnt_array1d_utils.h	150
modules/cealign/src/tnt/tnt_array2d.h	203
modules/cealign/src/tnt/tnt_array2d_utils.h	189
modules/cealign/src/tnt/tnt_array3d.h	201
modules/cealign/src/tnt/tnt_array3d_utils.h	172
modules/cealign/src/tnt/tnt_fortran_array1d.h	173
modules/cealign/src/tnt/tnt_fortran_array1d_utils.h	146
modules/cealign/src/tnt/tnt_fortran_array2d.h	141
modules/cealign/src/tnt/tnt_fortran_array2d_utils.h	169
modules/cealign/src/tnt/tnt_fortran_array3d.h	144
modules/cealign/src/tnt/tnt_fortran_array3d_utils.h	172
modules/cealign/src/tnt/tnt_i_refvec.h	144
modules/cealign/src/tnt/tnt_lapack.h	28
modules/cealign/src/tnt/tnt_linalg.h	1525
modules/cealign/src/tnt/tnt_math_utils.h	19
modules/cealign/src/tnt/tnt_matrix.h	546
modules/cealign/src/tnt/tnt_sparse_matrix.h	171
modules/cealign/src/tnt/tnt_sparse_vector.h	137
modules/cealign/src/tnt/tnt_stopwatch.h	58
modules/cealign/src/tnt/tnt_subscript.h	11
modules/cealign/src/tnt/tnt_vector.h	314
modules/cealign/src/tnt/tnt_version.h	7
modules/chempy/__init__.py	636
modules/chempy/arc.py	20
modules/chempy/bmin/__init__.py	37
modules/chempy/bmin/commands.py	35
modules/chempy/bmin/realtime.py	102
modules/chempy/bmin/state.py	62
modules/chempy/bmin/util.py	50
modules/chempy/bond_amber.py	156
modules/chempy/bond_mmff.py	142
modules/chempy/bonds.py	1135
modules/chempy/brick.py	42
modules/chempy/cc1.py	35
modules/chempy/cex.py	387
modules/chempy/champ/__init__.py	241
modules/chempy/champ/amber99.py	1694
modules/chempy/champ/assign.py	135
modules/chempy/champ/formal_charges.py	418
modules/chempy/charge.py	92
modules/chempy/cif.py	569
modules/chempy/cpv.py	269
modules/chempy/dictdb.py	587
modules/chempy/fast/__init__.py	130
modules/chempy/fragments/__init__.py	5
modules/chempy/gamess1.py	557
modules/chempy/gms.py	65
modules/chempy/hetatm.py	141
modules/chempy/io.py	22
modules/chempy/lst.py	15
modules/chempy/mae.py	321
modules/chempy/map.py	26
modules/chempy/mass.py	26
modules/chempy/mmd.py	172
modules/chempy/mmtf/__init__.py	118
modules/chempy/mmtf/io.py	197
modules/chempy/models.py	558
modules/chempy/mol.py	96
modules/chempy/mol2.py	61
modules/chempy/neighbor.py	54
modules/chempy/pdb.py	77
modules/chempy/pkl.py	68
modules/chempy/place.py	294
modules/chempy/protein.py	319
modules/chempy/protein_amber.py	1293
modules/chempy/protein_amber99.py	1293
modules/chempy/protein_mmff.py	1214
modules/chempy/protein_residues.py	4212
modules/chempy/sdf.py	141
modules/chempy/solvate.py	41
modules/chempy/tinker/__init__.py	122
modules/chempy/tinker/amber.py	833
modules/chempy/tinker/keyword.py	38
modules/chempy/tinker/realtime.py	142
modules/chempy/tinker/state.py	223
modules/chempy/water_amber.py	8
modules/chempy/water_residues.py	32
modules/chempy/xyz.py	84
modules/compile_pymol.py	3
modules/launch_pymol.py	17
modules/pmg_qt/TextEditor.py	153
modules/pmg_qt/__init__.py	3
modules/pmg_qt/advanced_settings_gui.py	66
modules/pmg_qt/builder.py	1159
modules/pmg_qt/file_dialogs.py	640
modules/pmg_qt/forms/__init__.py	1
modules/pmg_qt/forms/askpartial.ui	197
modules/pmg_qt/forms/colors.ui	176
modules/pmg_qt/forms/fetch.ui	255
modules/pmg_qt/forms/load_aln.ui	101
modules/pmg_qt/forms/load_mae.ui	171
modules/pmg_qt/forms/load_map.ui	284
modules/pmg_qt/forms/load_mtz.ui	205
modules/pmg_qt/forms/load_traj.ui	222
modules/pmg_qt/forms/movieexport.ui	363
modules/pmg_qt/forms/pluginitem.ui	126
modules/pmg_qt/forms/pluginmanager.ui	428
modules/pmg_qt/forms/png.ui	91
modules/pmg_qt/forms/props.ui	100
modules/pmg_qt/forms/render.ui	456
modules/pmg_qt/forms/save_molecule.ui	384
modules/pmg_qt/forms/save_object.ui	52
modules/pmg_qt/keymapping.py	73
modules/pmg_qt/mimic_pmg_tk.py	107
modules/pmg_qt/mimic_tk.py	128
modules/pmg_qt/properties_dialog.py	258
modules/pmg_qt/pymol_gl_widget.py	139
modules/pmg_qt/pymol_qt_gui.py	898
modules/pmg_qt/syntax/__init__.py	16
modules/pmg_qt/syntax/pml.py	92
modules/pmg_qt/syntax/pmlparser.py	115
modules/pmg_qt/syntax/python.py	97
modules/pmg_qt/volume.py	630
modules/pmg_tk/ColorEditor.py	109
modules/pmg_tk/Demo.py	2
modules/pmg_tk/PMGApp.py	274
modules/pmg_tk/PyMOLMapLoad.py	272
modules/pmg_tk/SetEditor.py	93
modules/pmg_tk/Setting.py	75
modules/pmg_tk/TextEditor.py	118
modules/pmg_tk/__init__.py	14
modules/pmg_tk/skins/__init__.py	9
modules/pmg_tk/skins/normal/ModalWindow.py	60
modules/pmg_tk/skins/normal/__init__.py	1000
modules/pmg_tk/skins/normal/builder.py	1218
modules/pmg_tk/startup/__init__.py	1
modules/pmg_tk/startup/apbs_tools.py	1570
modules/pmg_tk/volume.py	902
modules/pymol/Qt/__init__.py	56
modules/pymol/Qt/utils.py	174
modules/pymol/__init__.py	410
modules/pymol/__main__.py	8
modules/pymol/_gui.py	986
modules/pymol/api.py	408
modules/pymol/callback.py	5
modules/pymol/cgo.py	509
modules/pymol/checking.py	31
modules/pymol/cmd.py	229
modules/pymol/colorprinting.py	34
modules/pymol/colorramping.py	271
modules/pymol/commanding.py	521
modules/pymol/completing.py	277
modules/pymol/computing.py	236
modules/pymol/constants.py	324
modules/pymol/constants_palette.py	62
modules/pymol/contrib/__init__.py	32
modules/pymol/controlling.py	781
modules/pymol/creating.py	897
modules/pymol/diagnosing.py	98
modules/pymol/editing.py	2009
modules/pymol/editor.py	367
modules/pymol/embed/__init__.py	159
modules/pymol/embed/epymol/__init__.py	30
modules/pymol/embed/wxpymol/__init__.py	211
modules/pymol/experimenting.py	179
modules/pymol/exporting.py	731
modules/pymol/externing.py	124
modules/pymol/feedingback.py	143
modules/pymol/fitting.py	535
modules/pymol/gui.py	62
modules/pymol/headering.py	308
modules/pymol/helping.py	550
modules/pymol/importing.py	1279
modules/pymol/internal.py	562
modules/pymol/invocation.py	464
modules/pymol/keyboard.py	186
modules/pymol/keywords.py	349
modules/pymol/lazyio.py	218
modules/pymol/locking.py	111
modules/pymol/m4x.py	385
modules/pymol/menu.py	1637
modules/pymol/monitoring.py	24
modules/pymol/morphing.py	37
modules/pymol/movie.py	767
modules/pymol/moving.py	747
modules/pymol/opengl/__init__.py	2
modules/pymol/opengl/gl/__init__.py	1
modules/pymol/opengl/glu/__init__.py	1
modules/pymol/opengl/glut/__init__.py	1
modules/pymol/parser.py	462
modules/pymol/parsing.py	474
modules/pymol/plugins/__init__.py	349
modules/pymol/plugins/installation.py	273
modules/pymol/plugins/legacysupport.py	149
modules/pymol/plugins/managergui.py	502
modules/pymol/plugins/managergui_qt.py	343
modules/pymol/plugins/repository.py	281
modules/pymol/povray.py	26
modules/pymol/preset.py	326
modules/pymol/pymolhttpd.py	372
modules/pymol/querying.py	1270
modules/pymol/rpc.py	253
modules/pymol/selecting.py	169
modules/pymol/selector.py	4
modules/pymol/seqalign.py	134
modules/pymol/setting.py	529
modules/pymol/shortcut.py	147
modules/pymol/stereochemistry/__init__.py	19
modules/pymol/util.py	1313
modules/pymol/vfont.py	884
modules/pymol/viewing.py	1699
modules/pymol/wizard/__init__.py	70
modules/pymol/wizard/annotation.py	61
modules/pymol/wizard/appearance.py	207
modules/pymol/wizard/benchmark.py	340
modules/pymol/wizard/box.py	357
modules/pymol/wizard/charge.py	246
modules/pymol/wizard/cleanup.py	137
modules/pymol/wizard/command.py	116
modules/pymol/wizard/demo.py	420
modules/pymol/wizard/density.py	221
modules/pymol/wizard/distance.py	162
modules/pymol/wizard/dragging.py	86
modules/pymol/wizard/fedora.py	29
modules/pymol/wizard/filter.py	301
modules/pymol/wizard/label.py	80
modules/pymol/wizard/measurement.py	385
modules/pymol/wizard/message.py	33
modules/pymol/wizard/mutagenesis.py	608
modules/pymol/wizard/nucmutagenesis.py	359
modules/pymol/wizard/pair_fit.py	166
modules/pymol/wizard/pseudoatom.py	39
modules/pymol/wizard/renaming.py	42
modules/pymol/wizard/sculpting.py	175
modules/pymol/wizard/security.py	38
modules/pymol/wizard/stereodemo.py	407
modules/pymol/wizard/toggle.py	39
modules/pymol/wizarding.py	159
modules/pymol/xray.py	8555
modules/pymol/xwin.py	17
modules/pymol2/__init__.py	81
modules/pymol2/cmd2.py	71
modules/sitecustomize.py	3
modules/web/javascript/json2.js	164
modules/web/javascript/pymol.js	1067