Path	Lines of Code
contrib/champ/champ.c	4439
contrib/champ/champ.h	229
contrib/champ/champ_module.c	951
contrib/champ/chiral.c	67
contrib/champ/chiral.h	5
contrib/champ/const.h	6
contrib/champ/err2.c	14
contrib/champ/err2.h	5
contrib/champ/feedback2.c	93
contrib/champ/feedback2.h	34
contrib/champ/list.c	238
contrib/champ/list.h	44
contrib/champ/mac.h	12
contrib/champ/os_memory.c	290
contrib/champ/os_memory.h	28
contrib/champ/os_python.h	22
contrib/champ/os_std.h	13
contrib/champ/sort.c	58
contrib/champ/sort.h	4
contrib/champ/strblock.c	62
contrib/champ/strblock.h	10
contrib/champ/vla.c	119
contrib/champ/vla.h	37
contrib/mmtf-c/mmtf_parser.cpp	770
contrib/mmtf-c/mmtf_parser.h	98
contrib/mmtf-c/mmtf_parser_private.h	39
contrib/uiuc/plugins/include/import_graphics_plugin.h	29
contrib/uiuc/plugins/include/molfile_plugin.h	319
contrib/uiuc/plugins/include/vmdconio.h	46
contrib/uiuc/plugins/include/vmdplugin.h	62
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h	1244
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c	395
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h	644
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h	345
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c	1139
contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp	422
contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c	418
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp	515
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c	183
contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp	122
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp	211
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c	238
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp	571
contrib/uiuc/plugins/molfile_plugin/src/corplugin.c	243
contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c	140
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp	446
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c	850
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c	584
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp	202
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp	1890
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx	197
contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp	323
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp	402
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h	108
contrib/uiuc/plugins/molfile_plugin/src/fastio.h	436
contrib/uiuc/plugins/molfile_plugin/src/fortread.h	77
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp	260
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c	2974
contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h	138
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp	362
contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp	176
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp	139
contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp	634
contrib/uiuc/plugins/molfile_plugin/src/hash.c	143
contrib/uiuc/plugins/molfile_plugin/src/hash.h	30
contrib/uiuc/plugins/molfile_plugin/src/inthash.c	140
contrib/uiuc/plugins/molfile_plugin/src/inthash.h	30
contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c	1560
contrib/uiuc/plugins/molfile_plugin/src/largefiles.h	9
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp	1621
contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp	149
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp	275
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp	403
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c	743
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp	238
contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp	172
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c	224
contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp	246
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp	134
contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp	107
contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp	222
contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c	389
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp	1233
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h	142
contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp	176
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp	121
contrib/uiuc/plugins/molfile_plugin/src/ply.h	154
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h	1849
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp	225
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c	318
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c	844
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h	597
contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp	349
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h	252
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c	237
contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp	258
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp	232
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp	181
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c	152
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp	249
contrib/uiuc/plugins/molfile_plugin/src/unit_conversion.h	7
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c	174
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c	222
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c	197
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c	209
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h	83
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c	272
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c	214
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c	160
contrib/uiuc/plugins/molfile_plugin/src/vmddir.h	108
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c	984
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp	306
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp	545
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp	750
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c	223
contrib/uiuc/plugins/molfile_plugin/update.py	95
create_shadertext.py	114
data/chempy/sidechains/generate1.py	91
data/chempy/sidechains/generate2.py	96
data/chempy/sidechains/sc_bb_dep.py	116
data/chempy/sidechains/sc_bb_ind.py	102
data/chempy/tinker/make99_simple.py	161
data/chempy/tinker/make_simple.py	964
data/pmg_qt/styles/pymol.sty	16
data/shaders/anaglyph_header.fs	140
data/shaders/bg.fs	10
data/shaders/call_compute_color_for_light.fs	12
data/shaders/compute_color_for_light.fs	81
data/shaders/compute_fog_color.fs	44
data/shaders/connector.fs	32
data/shaders/connector.gs	339
data/shaders/copy.fs	11
data/shaders/cylinder.fs	146
data/shaders/default.fs	31
data/shaders/indicator.fs	25
data/shaders/label.fs	32
data/shaders/line.fs	34
data/shaders/oit.fs	27
data/shaders/ramp.fs	13
data/shaders/screen.fs	16
data/shaders/sphere.fs	67
data/shaders/sphere_arb_fs.fs	40
data/shaders/surface.fs	48
data/shaders/trilines.fs	28
data/shaders/volume.fs	36
data/shaders/webgl_header.fs	7
data/startup/lightingsettings_gui/__init__.py	10
data/startup/lightingsettings_gui/main.py	188
layer0/Base.h	96
layer0/Block.cpp	129
layer0/Block.h	40
layer0/Crystal.cpp	180
layer0/Crystal.h	25
layer0/Debug.cpp	3
layer0/Debug.h	3
layer0/Deferred.cpp	7
layer0/Deferred.h	12
layer0/Err.cpp	33
layer0/Err.h	11
layer0/Feedback.cpp	113
layer0/Feedback.h	110
layer0/Field.cpp	382
layer0/Field.h	48
layer0/File.cpp	53
layer0/File.h	9
layer0/GenericBuffer.cpp	412
layer0/GenericBuffer.h	564
layer0/GraphicsUtil.cpp	87
layer0/GraphicsUtil.h	6
layer0/Isosurf.cpp	1766
layer0/Isosurf.h	37
layer0/LangUtil.h	24
layer0/Lex.h	28
layer0/ListMacros.h	160
layer0/Map.cpp	857
layer0/Map.h	53
layer0/Match.cpp	510
layer0/Match.h	21
layer0/Matrix.cpp	2447
layer0/Matrix.h	37
layer0/MemoryCache.h	44
layer0/MemoryDebug.cpp	254
layer0/MemoryDebug.h	81
layer0/MyPNG.cpp	358
layer0/MyPNG.h	11
layer0/OOMac.h	15
layer0/Parse.cpp	272
layer0/Parse.h	52
layer0/Pixmap.cpp	207
layer0/Pixmap.h	23
layer0/PyMOLGlobals.h	145
layer0/PyMOLOptions.h	34
layer0/ShaderMgr.cpp	1380
layer0/ShaderMgr.h	274
layer0/ShaderPrg.cpp	360
layer0/Sphere.cpp	564
layer0/Sphere.h	25
layer0/SphereData.h	7390
layer0/Tetsurf.cpp	1229
layer0/Tetsurf.h	19
layer0/Texture.cpp	231
layer0/Texture.h	12
layer0/Tracker.cpp	1199
layer0/Tracker.h	29
layer0/Triangle.cpp	2107
layer0/Triangle.h	10
layer0/Util.cpp	461
layer0/Util.h	38
layer0/Util2.cpp	57
layer0/Util2.h	13
layer0/Vector.cpp	1672
layer0/Vector.h	389
layer0/Version.h	7
layer0/Word.cpp	890
layer0/Word.h	130
layer0/lex_constants.h	30
layer0/os_gl.cpp	1588
layer0/os_gl.h	266
layer0/os_limits.h	6
layer0/os_numpy.h	8
layer0/os_predef.h	71
layer0/os_proprietary.h	7
layer0/os_python.h	60
layer0/os_std.h	12
layer0/os_time.h	11
layer0/os_types.h	5
layer0/os_unix.h	7
layer0/strcasecmp.h	8
layer0/vla.h	111
layer1/Basis.cpp	2828
layer1/Basis.h	101
layer1/ButMode.cpp	654
layer1/ButMode.h	166
layer1/CGO.h	802
layer1/COLLADA.cpp	1304
layer1/Character.cpp	436
layer1/Character.h	73
layer1/Color.cpp	2580
layer1/Color.h	85
layer1/Control.cpp	763
layer1/Control.h	15
layer1/Extrude.cpp	1934
layer1/Extrude.h	53
layer1/Font.cpp	11
layer1/Font.h	32
layer1/FontGLUT.cpp	396
layer1/FontGLUT.h	37
layer1/FontGLUT8x13.cpp	1169
layer1/FontGLUT9x15.cpp	1173
layer1/FontGLUTHel10.cpp	1005
layer1/FontGLUTHel12.cpp	1020
layer1/FontGLUTHel18.cpp	1219
layer1/FontType.cpp	502
layer1/FontType.h	5
layer1/Movie.cpp	1730
layer1/Movie.h	65
layer1/Ortho.cpp	2328
layer1/Ortho.h	95
layer1/P.cpp	2288
layer1/P.h	200
layer1/PConv.cpp	1131
layer1/PConv.h	227
layer1/PConvArgs.h	127
layer1/Pop.cpp	106
layer1/Pop.h	9
layer1/PyMOLObject.cpp	1238
layer1/PyMOLObject.h	146
layer1/Ray.cpp	6734
layer1/Ray.h	131
layer1/Rep.cpp	141
layer1/Rep.h	123
layer1/Scene.cpp	6159
layer1/Scene.h	189
layer1/SceneDef.h	193
layer1/ScenePicking.cpp	461
layer1/ScenePicking.h	13
layer1/SceneRay.cpp	719
layer1/SceneRay.h	14
layer1/SceneRender.cpp	1389
layer1/SceneRender.h	14
layer1/ScrollBar.cpp	306
layer1/ScrollBar.h	49
layer1/Seq.cpp	708
layer1/Seq.h	55
layer1/Setting.cpp	2764
layer1/Setting.h	275
layer1/SettingInfo.h	830
layer1/Shaker.cpp	267
layer1/Shaker.h	67
layer1/Symmetry.cpp	193
layer1/Symmetry.h	29
layer1/Text.cpp	654
layer1/Text.h	67
layer1/TypeFace.cpp	143
layer1/TypeFace.h	14
layer1/View.cpp	1072
layer1/View.h	61
layer1/Wizard.cpp	878
layer1/Wizard.h	26
layer2/AssemblyHelpers.cpp	46
layer2/AssemblyHelpers.h	13
layer2/AtomInfo.cpp	2624
layer2/AtomInfo.h	349
layer2/AtomInfoHistory.cpp	99
layer2/AtomInfoHistory.h	210
layer2/BondTypeHistory.cpp	61
layer2/BondTypeHistory.h	34
layer2/CifBondDict.h	84
layer2/CifFile.cpp	263
layer2/CifFile.h	80
layer2/CifMoleculeReader.cpp	1625
layer2/CoordSet.cpp	1475
layer2/CoordSet.h	148
layer2/DistSet.cpp	400
layer2/DistSet.h	41
layer2/GadgetSet.cpp	371
layer2/GadgetSet.h	34
layer2/HydrogenAdder.cpp	253
layer2/HydrogenAdder.h	7
layer2/MmodTyping.cpp	146
layer2/MmodTyping.h	2
layer2/MmtfMoleculeReader.cpp	247
layer2/Mol2Typing.cpp	130
layer2/Mol2Typing.h	2
layer2/MolV3000.cpp	177
layer2/MolV3000.h	10
layer2/ObjectAlignment.cpp	1071
layer2/ObjectAlignment.h	38
layer2/ObjectCGO.cpp	648
layer2/ObjectCGO.h	28
layer2/ObjectCallback.cpp	242
layer2/ObjectCallback.h	22
layer2/ObjectDist.cpp	635
layer2/ObjectDist.h	38
layer2/ObjectGadget.cpp	382
layer2/ObjectGadget.h	38
layer2/ObjectGadgetRamp.cpp	909
layer2/ObjectGadgetRamp.h	66
layer2/ObjectGroup.cpp	86
layer2/ObjectGroup.h	19
layer2/ObjectMap.cpp	4875
layer2/ObjectMap.h	129
layer2/ObjectMesh.cpp	1231
layer2/ObjectMesh.h	58
layer2/ObjectMolecule.h	409
layer2/ObjectMolecule2.cpp	3861
layer2/ObjectSlice.cpp	1217
layer2/ObjectSlice.h	49
layer2/ObjectSurface.cpp	1134
layer2/ObjectSurface.h	52
layer2/ObjectVolume.cpp	1067
layer2/ObjectVolume.h	58
layer2/RepAngle.cpp	407
layer2/RepAngle.h	5
layer2/RepCartoon.cpp	3359
layer2/RepCartoon.h	7
layer2/RepCylBond.cpp	975
layer2/RepCylBond.h	7
layer2/RepDihedral.cpp	460
layer2/RepDihedral.h	6
layer2/RepDistDash.cpp	394
layer2/RepDistDash.h	6
layer2/RepDistLabel.cpp	488
layer2/RepDistLabel.h	6
layer2/RepDot.cpp	439
layer2/RepDot.h	25
layer2/RepEllipsoid.cpp	273
layer2/RepEllipsoid.h	7
layer2/RepLabel.cpp	1483
layer2/RepLabel.h	7
layer2/RepMesh.cpp	1261
layer2/RepMesh.h	11
layer2/RepNonbonded.cpp	255
layer2/RepNonbonded.h	7
layer2/RepNonbondedSphere.cpp	170
layer2/RepNonbondedSphere.h	7
layer2/RepRibbon.cpp	557
layer2/RepRibbon.h	8
layer2/RepSphere.cpp	546
layer2/RepSphere.h	16
layer2/RepSphereGenerate.cpp	94
layer2/RepSphereGenerate.h	13
layer2/RepSphereImmediate.cpp	265
layer2/RepSphereImmediate.h	4
layer2/RepSurface.cpp	4502
layer2/RepSurface.h	11
layer2/RepWireBond.cpp	754
layer2/RepWireBond.h	7
layer2/Sculpt.cpp	2112
layer2/Sculpt.h	35
layer2/SculptCache.cpp	111
layer2/SculptCache.h	22
layer2/SideChainHelper.cpp	137
layer2/SideChainHelper.h	15
layer2/VFont.cpp	303
layer2/VFont.h	12
layer3/AtomIterators.cpp	102
layer3/AtomIterators.h	96
layer3/CifDataValueFormatter.cpp	61
layer3/CifDataValueFormatter.h	14
layer3/Editor.cpp	2041
layer3/Editor.h	72
layer3/Executive.h	485
layer3/Executive_pre.h	8
layer3/MaeExportHelpers.cpp	131
layer3/MaeExportHelpers.h	18
layer3/MoleculeExporter.cpp	1194
layer3/MoleculeExporter.h	14
layer3/MovieScene.cpp	531
layer3/MovieScene.h	35
layer3/PlugIOManager.cpp	721
layer3/PlugIOManager.h	26
layer3/Seeker.cpp	1877
layer3/Seeker.h	17
layer3/Selector.h	170
layer3/SelectorDef.h	44
layer3/SpecRec.h	22
layer4/Cmd.cpp	8008
layer4/Cmd.h	11
layer4/Export.cpp	174
layer4/Export.h	26
layer4/Menu.cpp	91
layer4/Menu.h	16
layer4/PopUp.cpp	817
layer4/PopUp.h	7
layer5/MacPyMOL.h	12
layer5/PyMOL.cpp	2912
layer5/PyMOL.h	379
layer5/TestPyMOL.cpp	421
layer5/TestPyMOL.h	5
layer5/main.cpp	1309
layer5/main.h	41
layerCTest/Test.cpp	19
layerCTest/Test.h	46
layerCTest/TestCmdTest2.h	2
layerCTest/Test_Classic_VLA.cpp	9
layerCTest/Test_VLA.cpp	156
modules/cealign/src/ccealignmodule.cpp	391
modules/cealign/src/ce_types.h	18
modules/cealign/src/tnt/jama_cholesky.h	139
modules/cealign/src/tnt/jama_eig.h	684
modules/cealign/src/tnt/jama_lu.h	184
modules/cealign/src/tnt/jama_qr.h	188
modules/cealign/src/tnt/jama_svd.h	396
modules/cealign/src/tnt/tnt.h	23
modules/cealign/src/tnt/tnt_array1d.h	197
modules/cealign/src/tnt/tnt_array1d_utils.h	150
modules/cealign/src/tnt/tnt_array2d.h	203
modules/cealign/src/tnt/tnt_array2d_utils.h	189
modules/cealign/src/tnt/tnt_array3d.h	201
modules/cealign/src/tnt/tnt_array3d_utils.h	172
modules/cealign/src/tnt/tnt_fortran_array1d.h	173
modules/cealign/src/tnt/tnt_fortran_array1d_utils.h	146
modules/cealign/src/tnt/tnt_fortran_array2d.h	141
modules/cealign/src/tnt/tnt_fortran_array2d_utils.h	169
modules/cealign/src/tnt/tnt_fortran_array3d.h	144
modules/cealign/src/tnt/tnt_fortran_array3d_utils.h	172
modules/cealign/src/tnt/tnt_i_refvec.h	144
modules/cealign/src/tnt/tnt_lapack.h	28
modules/cealign/src/tnt/tnt_linalg.h	1525
modules/cealign/src/tnt/tnt_math_utils.h	19
modules/cealign/src/tnt/tnt_matrix.h	546
modules/cealign/src/tnt/tnt_sparse_matrix.h	171
modules/cealign/src/tnt/tnt_sparse_vector.h	137
modules/cealign/src/tnt/tnt_stopwatch.h	58
modules/cealign/src/tnt/tnt_subscript.h	11
modules/cealign/src/tnt/tnt_vector.h	314
modules/cealign/src/tnt/tnt_version.h	7
modules/chempy/__init__.py	636
modules/chempy/arc.py	20
modules/chempy/bmin/__init__.py	37
modules/chempy/bmin/commands.py	35
modules/chempy/bmin/realtime.py	102
modules/chempy/bmin/state.py	62
modules/chempy/bmin/util.py	50
modules/chempy/bond_amber.py	156
modules/chempy/bond_mmff.py	142
modules/chempy/bonds.py	1135
modules/chempy/brick.py	42
modules/chempy/cc1.py	35
modules/chempy/cex.py	387
modules/chempy/champ/__init__.py	241
modules/chempy/champ/amber99.py	1694
modules/chempy/champ/assign.py	135
modules/chempy/champ/formal_charges.py	418
modules/chempy/charge.py	92
modules/chempy/cif.py	569
modules/chempy/cpv.py	269
modules/chempy/dictdb.py	587
modules/chempy/fast/__init__.py	130
modules/chempy/fragments/__init__.py	5
modules/chempy/gamess1.py	557
modules/chempy/gms.py	65
modules/chempy/hetatm.py	141
modules/chempy/io.py	22
modules/chempy/lst.py	15
modules/chempy/mae.py	321
modules/chempy/map.py	26
modules/chempy/mass.py	26
modules/chempy/mmd.py	172
modules/chempy/mmtf/__init__.py	118
modules/chempy/mmtf/io.py	197
modules/chempy/models.py	558
modules/chempy/mol.py	96
modules/chempy/mol2.py	61
modules/chempy/neighbor.py	54
modules/chempy/pdb.py	77
modules/chempy/pkl.py	68
modules/chempy/place.py	294
modules/chempy/protein.py	319
modules/chempy/protein_amber.py	1293
modules/chempy/protein_amber99.py	1293
modules/chempy/protein_mmff.py	1214
modules/chempy/protein_residues.py	4212
modules/chempy/sdf.py	141
modules/chempy/solvate.py	41
modules/chempy/tinker/__init__.py	122
modules/chempy/tinker/amber.py	833
modules/chempy/tinker/keyword.py	38
modules/chempy/tinker/realtime.py	142
modules/chempy/tinker/state.py	223
modules/chempy/water_amber.py	8
modules/chempy/water_residues.py	32
modules/chempy/xyz.py	84
modules/compile_pymol.py	3
modules/launch_pymol.py	17
modules/pmg_qt/TextEditor.py	153
modules/pmg_qt/__init__.py	3
modules/pmg_qt/advanced_settings_gui.py	66
modules/pmg_qt/builder.py	1159
modules/pmg_qt/file_dialogs.py	640
modules/pmg_qt/forms/__init__.py	1
modules/pmg_qt/forms/askpartial.ui	197
modules/pmg_qt/forms/colors.ui	176
modules/pmg_qt/forms/fetch.ui	255
modules/pmg_qt/forms/load_aln.ui	101
modules/pmg_qt/forms/load_mae.ui	171
modules/pmg_qt/forms/load_map.ui	284
modules/pmg_qt/forms/load_mtz.ui	205
modules/pmg_qt/forms/load_traj.ui	222
modules/pmg_qt/forms/movieexport.ui	363
modules/pmg_qt/forms/pluginitem.ui	126
modules/pmg_qt/forms/pluginmanager.ui	428
modules/pmg_qt/forms/png.ui	91
modules/pmg_qt/forms/props.ui	100
modules/pmg_qt/forms/render.ui	456
modules/pmg_qt/forms/save_molecule.ui	384
modules/pmg_qt/forms/save_object.ui	52
modules/pmg_qt/keymapping.py	73
modules/pmg_qt/mimic_pmg_tk.py	107
modules/pmg_qt/mimic_tk.py	128
modules/pmg_qt/properties_dialog.py	258
modules/pmg_qt/pymol_gl_widget.py	139
modules/pmg_qt/pymol_qt_gui.py	898
modules/pmg_qt/syntax/__init__.py	16
modules/pmg_qt/syntax/pml.py	92
modules/pmg_qt/syntax/pmlparser.py	115
modules/pmg_qt/syntax/python.py	97
modules/pmg_qt/volume.py	630
modules/pmg_tk/ColorEditor.py	109
modules/pmg_tk/Demo.py	2
modules/pmg_tk/PMGApp.py	274
modules/pmg_tk/PyMOLMapLoad.py	272
modules/pmg_tk/SetEditor.py	93
modules/pmg_tk/Setting.py	75
modules/pmg_tk/TextEditor.py	118
modules/pmg_tk/__init__.py	14
modules/pmg_tk/skins/__init__.py	9
modules/pmg_tk/skins/normal/ModalWindow.py	60
modules/pmg_tk/skins/normal/__init__.py	1000
modules/pmg_tk/skins/normal/builder.py	1218
modules/pmg_tk/startup/__init__.py	1
modules/pmg_tk/startup/apbs_tools.py	1570
modules/pmg_tk/volume.py	902
modules/pymol/Qt/__init__.py	56
modules/pymol/Qt/utils.py	174
modules/pymol/__init__.py	410
modules/pymol/__main__.py	8
modules/pymol/_gui.py	986
modules/pymol/api.py	408
modules/pymol/callback.py	5
modules/pymol/cgo.py	509
modules/pymol/checking.py	31
modules/pymol/cmd.py	229
modules/pymol/colorprinting.py	34
modules/pymol/colorramping.py	271
modules/pymol/commanding.py	521
modules/pymol/completing.py	277
modules/pymol/computing.py	236
modules/pymol/constants.py	324
modules/pymol/constants_palette.py	62
modules/pymol/contrib/__init__.py	32
modules/pymol/controlling.py	781
modules/pymol/creating.py	897
modules/pymol/diagnosing.py	98
modules/pymol/editing.py	2009
modules/pymol/editor.py	367
modules/pymol/embed/__init__.py	159
modules/pymol/embed/epymol/__init__.py	30
modules/pymol/embed/wxpymol/__init__.py	211
modules/pymol/experimenting.py	179
modules/pymol/exporting.py	731
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modules/pymol/feedingback.py	143
modules/pymol/fitting.py	535
modules/pymol/gui.py	62
modules/pymol/headering.py	308
modules/pymol/helping.py	550
modules/pymol/importing.py	1279
modules/pymol/internal.py	562
modules/pymol/invocation.py	464
modules/pymol/keyboard.py	186
modules/pymol/keywords.py	349
modules/pymol/lazyio.py	218
modules/pymol/locking.py	111
modules/pymol/m4x.py	385
modules/pymol/menu.py	1637
modules/pymol/monitoring.py	24
modules/pymol/morphing.py	37
modules/pymol/movie.py	767
modules/pymol/moving.py	747
modules/pymol/opengl/__init__.py	2
modules/pymol/opengl/gl/__init__.py	1
modules/pymol/opengl/glu/__init__.py	1
modules/pymol/opengl/glut/__init__.py	1
modules/pymol/parser.py	462
modules/pymol/parsing.py	474
modules/pymol/plugins/__init__.py	349
modules/pymol/plugins/installation.py	273
modules/pymol/plugins/legacysupport.py	149
modules/pymol/plugins/managergui.py	502
modules/pymol/plugins/managergui_qt.py	343
modules/pymol/plugins/repository.py	281
modules/pymol/povray.py	26
modules/pymol/preset.py	326
modules/pymol/pymolhttpd.py	372
modules/pymol/querying.py	1270
modules/pymol/rpc.py	253
modules/pymol/selecting.py	169
modules/pymol/selector.py	4
modules/pymol/seqalign.py	134
modules/pymol/setting.py	529
modules/pymol/shortcut.py	147
modules/pymol/stereochemistry/__init__.py	19
modules/pymol/util.py	1313
modules/pymol/vfont.py	884
modules/pymol/viewing.py	1699
modules/pymol/wizard/__init__.py	70
modules/pymol/wizard/annotation.py	61
modules/pymol/wizard/appearance.py	207
modules/pymol/wizard/benchmark.py	340
modules/pymol/wizard/box.py	357
modules/pymol/wizard/charge.py	246
modules/pymol/wizard/cleanup.py	137
modules/pymol/wizard/command.py	116
modules/pymol/wizard/demo.py	420
modules/pymol/wizard/density.py	221
modules/pymol/wizard/distance.py	162
modules/pymol/wizard/dragging.py	86
modules/pymol/wizard/fedora.py	29
modules/pymol/wizard/filter.py	301
modules/pymol/wizard/label.py	80
modules/pymol/wizard/measurement.py	385
modules/pymol/wizard/message.py	33
modules/pymol/wizard/mutagenesis.py	608
modules/pymol/wizard/nucmutagenesis.py	359
modules/pymol/wizard/pair_fit.py	166
modules/pymol/wizard/pseudoatom.py	39
modules/pymol/wizard/renaming.py	42
modules/pymol/wizard/sculpting.py	175
modules/pymol/wizard/security.py	38
modules/pymol/wizard/stereodemo.py	407
modules/pymol/wizard/toggle.py	39
modules/pymol/wizarding.py	159
modules/pymol/xray.py	8555
modules/pymol/xwin.py	17
modules/pymol2/__init__.py	81
modules/pymol2/cmd2.py	71
modules/sitecustomize.py	3
modules/web/javascript/json2.js	164
modules/web/javascript/pymol.js	1067
monkeypatch_distutils.py	117
ov/src/OVContext.cpp	25
ov/src/OVContext.h	13
ov/src/OVHeap.cpp	374
ov/src/OVHeap.h	47
ov/src/OVHeapArray.cpp	129
ov/src/OVHeapArray.h	68
ov/src/OVLexicon.cpp	328
ov/src/OVLexicon.h	22
ov/src/OVOneToAny.cpp	417
ov/src/OVOneToAny.h	20
ov/src/OVOneToOne.cpp	575
ov/src/OVOneToOne.h	25
ov/src/OVRandom.cpp	125
ov/src/OVRandom.h	13
ov/src/OVreturns.h	38
ov/src/ov_defines.h	33
ov/src/ov_port.h	23
ov/src/ov_status.h	15
ov/src/ov_types.h	118
ov/src/ov_utility.cpp	50
ov/src/ov_utility.h	6
setup.py	366