modules/pymol/keywords.py (349 lines of code) (raw):

from . import parsing cmd = __import__("sys").modules["pymol.cmd"] def get_command_keywords(self_cmd=cmd): import pymol.diagnosing return { # keyword : [ command, # min_arg, max_arg, separator, mode ] # NOTE: min_arg, max_arg, and separator, are hold-overs from the # original PyMOL parser which will eventually be removed. # all new commands should use NO_CHECK or STRICT modes # which make much better use of built-in python features. 'abort' : [ self_cmd.abort , 0 , 0 , '' , parsing.ABORT ], 'accept' : [ self_cmd.accept , 0 , 0 , '' , parsing.STRICT ], 'alias' : [ self_cmd.alias , 0 , 0 , '' , parsing.LITERAL1 ], # insecure 'align' : [ self_cmd.align , 0 , 0 , '' , parsing.STRICT ], 'alignto' : [ self_cmd.alignto , 0 , 0 , '' , parsing.STRICT ], 'alter' : [ self_cmd.alter , 0 , 0 , '' , parsing.LITERAL1 ], # insecure '_alt' : [ self_cmd._alt , 0 , 0 , '' , parsing.STRICT ], 'alter_state' : [ self_cmd.alter_state , 0 , 0 , '' , parsing.LITERAL2 ], # insecure 'alphatoall' : [ self_cmd.alphatoall , 0 , 0 , '' , parsing.STRICT ], 'angle' : [ self_cmd.angle , 0 , 0 , '' , parsing.STRICT ], 'api' : [ self_cmd.helping.api , 0 , 0 , '' , parsing.STRICT ], 'as' : [ self_cmd.show_as , 0 , 0 , '' , parsing.STRICT ], 'assert' : [ self_cmd.python_help , 0 , 0 , '' , parsing.PYTHON ], 'assign_stereo' : [ self_cmd.assign_stereo , 0 , 0 , '' , parsing.STRICT ], 'attach' : [ self_cmd.attach , 0 , 0 , '' , parsing.STRICT ], 'backward' : [ self_cmd.backward , 0 , 0 , '' , parsing.STRICT ], 'bg_color' : [ self_cmd.bg_color , 0 , 0 , '' , parsing.STRICT ], 'bond' : [ self_cmd.bond , 0 , 0 , '' , parsing.STRICT ], 'button' : [ self_cmd.button , 0 , 0 , '' , parsing.STRICT ], 'cache' : [ self_cmd.cache , 0 , 0 , '' , parsing.STRICT ], 'callout' : [ self_cmd.callout , 0 , 0 , '' , parsing.STRICT ], 'cartoon' : [ self_cmd.cartoon , 0 , 0 , '' , parsing.STRICT ], 'capture' : [ self_cmd.capture , 0 , 0 , '' , parsing.STRICT ], 'cealign' : [ self_cmd.cealign , 0 , 0 , '' , parsing.STRICT ], 'centerofmass' : [ self_cmd.centerofmass , 0 , 0 , '' , parsing.STRICT ], 'cd' : [ self_cmd.cd , 0 , 0 , '' , parsing.STRICT ], 'center' : [ self_cmd.center , 0 , 0 , '' , parsing.STRICT ], 'check' : [ self_cmd.check , 0 , 0 , '' , parsing.STRICT ], 'clean' : [ self_cmd.clean , 0 , 0 , '' , parsing.STRICT ], 'class' : [ self_cmd.python_help , 0 , 0 , '' , parsing.PYTHON ], 'clip' : [ self_cmd.clip , 0 , 0 , '' , parsing.STRICT ], 'cls' : [ self_cmd.cls , 0 , 0 , '' , parsing.STRICT ], '_ctrl' : [ self_cmd._ctrl , 0 , 0 , '' , parsing.STRICT ], '_ctsh' : [ self_cmd._ctsh , 0 , 0 , '' , parsing.STRICT ], 'color' : [ self_cmd.color , 0 , 0 , '' , parsing.STRICT ], 'config_mouse' : [ self_cmd.config_mouse , 0 , 0 , '' , parsing.STRICT ], 'copy' : [ self_cmd.copy , 0 , 0 , '' , parsing.LEGACY ], 'copy_to' : [ self_cmd.copy_to , 0 , 0 , '' , parsing.STRICT ], 'count_atoms' : [ self_cmd.count_atoms , 0 , 0 , '' , parsing.STRICT ], 'count_frames' : [ self_cmd.count_frames , 0 , 0 , '' , parsing.STRICT ], 'count_states' : [ self_cmd.count_states , 0 , 0 , '' , parsing.STRICT ], 'count_discrete': [ self_cmd.count_discrete , 0 , 0 , '' , parsing.STRICT ], 'cycle_valence' : [ self_cmd.cycle_valence , 0 , 0 , '' , parsing.STRICT ], 'create' : [ self_cmd.create , 0 , 0 , '' , parsing.LEGACY ], 'decline' : [ self_cmd.decline , 0 , 0 , '' , parsing.STRICT ], 'delete' : [ self_cmd.delete , 0 , 0 , '' , parsing.STRICT ], 'def' : [ self_cmd.python_help , 0 , 0 , '' , parsing.PYTHON ], 'del' : [ self_cmd.python_help , 0 , 0 , '' , parsing.PYTHON ], 'deprotect' : [ self_cmd.deprotect , 0 , 0 , '' , parsing.STRICT ], 'desaturate' : [ self_cmd.desaturate , 0 , 0 , '' , parsing.STRICT ], 'deselect' : [ self_cmd.deselect , 0 , 0 , '' , parsing.STRICT ], 'diagnostics' : [ pymol.diagnosing.diagnostics,0 , 0 , '' , parsing.STRICT ], 'dihedral' : [ self_cmd.dihedral , 0 , 0 , '' , parsing.STRICT ], 'dir' : [ self_cmd.ls , 0 , 0 , '' , parsing.STRICT ], 'disable' : [ self_cmd.disable , 0 , 0 , '' , parsing.STRICT ], 'distance' : [ self_cmd.distance , 0 , 0 , '' , parsing.LEGACY ], 'drag' : [ self_cmd.drag , 0 , 0 , '' , parsing.STRICT ], 'draw' : [ self_cmd.draw , 0 , 0 , '' , parsing.STRICT ], 'dss' : [ self_cmd.dss , 0 , 0 , '' , parsing.STRICT ], 'dump' : [ self_cmd.dump , 0 , 0 , '' , parsing.STRICT ], 'edit' : [ self_cmd.edit , 0 , 0 , '' , parsing.STRICT ], 'edit_mode' : [ self_cmd.edit_mode , 0 , 0 , '' , parsing.STRICT ], 'embed' : [ self_cmd.helping.embed , 0 , 3 , ',' , parsing.EMBED ], 'enable' : [ self_cmd.enable , 0 , 0 , '' , parsing.STRICT ], 'ending' : [ self_cmd.ending , 0 , 0 , '' , parsing.STRICT ], 'extra_fit' : [ self_cmd.extra_fit , 0 , 0 , '' , parsing.STRICT ], 'extract' : [ self_cmd.extract , 0 , 0 , '' , parsing.STRICT ], 'exec' : [ self_cmd.python_help , 0 , 0 , '' , parsing.PYTHON ], 'export_dots' : [ self_cmd.export_dots , 0 , 0 , '' , parsing.STRICT ], 'fab' : [ self_cmd.fab , 0 , 0 , '' , parsing.STRICT ], 'feedback' : [ self_cmd.feedback , 0, 0 , '' , parsing.STRICT ], 'fetch' : [ self_cmd.fetch , 0, 0 , '' , parsing.STRICT ], 'fit' : [ self_cmd.fit , 0 , 0 , '' , parsing.STRICT ], 'fix_chemistry' : [ self_cmd.fix_chemistry , 0 , 0 , '' , parsing.STRICT ], 'flag' : [ self_cmd.flag , 0 , 0 , '' , parsing.LEGACY ], 'focal_blur' : [ self_cmd.focal_blur , 0 , 0 , '' , parsing.STRICT ], 'for' : [ self_cmd.python_help , 0 , 0 , '' , parsing.PYTHON ], 'fork' : [ self_cmd.spawn , 0 , 0 , '' , parsing.SECURE ], 'forward' : [ self_cmd.forward , 0 , 0 , '' , parsing.STRICT ], 'fragment' : [ self_cmd.fragment , 0 , 0 , '' , parsing.STRICT ], 'full_screen' : [ self_cmd.full_screen , 0 , 0 , '' , parsing.STRICT ], 'fuse' : [ self_cmd.fuse , 0 , 0 , '' , parsing.STRICT ], 'frame' : [ self_cmd.frame , 0 , 0 , '' , parsing.STRICT ], 'get' : [ self_cmd.get , 0 , 0 , '' , parsing.STRICT ], 'get_angle' : [ self_cmd.get_angle , 0 , 0 , '' , parsing.STRICT ], 'get_area' : [ self_cmd.get_area , 0 , 0 , '' , parsing.STRICT ], 'get_bond' : [ self_cmd.get_bond , 0 , 0 , '' , parsing.STRICT ], 'get_chains' : [ self_cmd.get_chains , 0 , 0 , '' , parsing.STRICT ], 'get_dihedral' : [ self_cmd.get_dihedral , 0 , 0 , '' , parsing.STRICT ], 'get_distance' : [ self_cmd.get_distance , 0 , 0 , '' , parsing.STRICT ], 'get_extent' : [ self_cmd.get_extent , 0 , 0 , '' , parsing.STRICT ], 'get_position' : [ self_cmd.get_position , 0 , 0 , '' , parsing.STRICT ], 'get_sasa_relative' : [ self_cmd.get_sasa_relative , 0 , 0 , '' , parsing.STRICT ], 'get_symmetry' : [ self_cmd.get_symmetry , 0 , 0 , '' , parsing.STRICT ], 'get_renderer' : [ self_cmd.get_renderer , 0 , 0 , '' , parsing.STRICT ], 'get_title' : [ self_cmd.get_title , 0 , 0 , '' , parsing.STRICT ], 'get_type' : [ self_cmd.get_type , 0 , 0 , '' , parsing.STRICT ], 'get_version' : [ self_cmd.get_version , 0 , 0 , '' , parsing.STRICT ], 'get_view' : [ self_cmd.get_view , 0 , 0 , '' , parsing.STRICT ], 'get_viewport' : [ self_cmd.get_viewport , 0 , 0 , '' , parsing.STRICT ], 'global' : [ self_cmd.python_help , 0 , 0 , '' , parsing.PYTHON ], 'gradient' : [ self_cmd.gradient , 0 , 0 , '' , parsing.STRICT ], 'group' : [ self_cmd.group , 0 , 0 , '' , parsing.STRICT ], 'h_add' : [ self_cmd.h_add , 0 , 0 , '' , parsing.STRICT ], 'h_fill' : [ self_cmd.h_fill , 0 , 0 , '' , parsing.STRICT ], 'h_fix' : [ self_cmd.h_fix , 0 , 0 , '' , parsing.STRICT ], 'help' : [ self_cmd.help , 0 , 0 , '' , parsing.STRICT ], 'help_setting' : [ self_cmd.help_setting , 0 , 0 , '' , parsing.STRICT ], 'hide' : [ self_cmd.hide , 0 , 0 , '' , parsing.STRICT ], 'id_atom' : [ self_cmd.id_atom , 0 , 0 , '' , parsing.STRICT ], 'identify' : [ self_cmd.identify , 0 , 0 , '' , parsing.STRICT ], 'if' : [ self_cmd.python_help , 0 , 0 , '' , parsing.PYTHON ], 'import' : [ self_cmd.python_help , 0 , 0 , '' , parsing.PYTHON ], 'index' : [ self_cmd.index , 0 , 0 , '' , parsing.STRICT ], 'indicate' : [ self_cmd.indicate , 0 , 0 , '' , parsing.STRICT ], 'intra_fit' : [ self_cmd.intra_fit , 0 , 0 , '' , parsing.STRICT ], 'intra_rms' : [ self_cmd.intra_rms , 0 , 0 , '' , parsing.STRICT ], 'intra_rms_cur' : [ self_cmd.intra_rms_cur , 0 , 0 , '' , parsing.STRICT ], 'invert' : [ self_cmd.invert , 0 , 0 , '' , parsing.STRICT ], 'isodot' : [ self_cmd.isodot , 0 , 0 , '' , parsing.LEGACY ], 'isolevel' : [ self_cmd.isolevel , 0 , 0 , '' , parsing.STRICT ], 'isomesh' : [ self_cmd.isomesh , 0 , 0 , '' , parsing.LEGACY ], 'isosurface' : [ self_cmd.isosurface , 0 , 0 , '' , parsing.LEGACY ], 'iterate' : [ self_cmd.iterate , 0 , 0 , '' , parsing.LITERAL1 ], # insecure 'iterate_state' : [ self_cmd.iterate_state , 0 , 0 , '' , parsing.LITERAL2 ], # insecure 'join_states' : [ self_cmd.join_states , 0 , 0 , '' , parsing.STRICT ], 'label' : [ self_cmd.label , 0 , 0 , '' , parsing.LITERAL1 ], # insecure 'load' : [ self_cmd.load , 0 , 0 , '' , parsing.STRICT ], 'loadall' : [ self_cmd.loadall , 0 , 0 , '' , parsing.STRICT ], 'space' : [ self_cmd.space , 0 , 0 , '' , parsing.STRICT ], 'load_embedded' : [ self_cmd.load_embedded , 0 , 0 , '' , parsing.STRICT ], 'load_mtz' : [ self_cmd.load_mtz , 0 , 0 , '' , parsing.STRICT ], 'load_png' : [ self_cmd.load_png , 0 , 0 , '' , parsing.STRICT ], 'load_traj' : [ self_cmd.load_traj , 0 , 0 , '' , parsing.STRICT ], 'log' : [ self_cmd.log , 0 , 0 , '' , parsing.STRICT ], 'log_close' : [ self_cmd.log_close , 0 , 0 , '' , parsing.STRICT ], 'log_open' : [ self_cmd.log_open , 0 , 0 , '' , parsing.STRICT ], 'ls' : [ self_cmd.ls , 0 , 0 , '' , parsing.STRICT ], 'madd' : [ self_cmd.madd , 0 , 0 , '' , parsing.STRICT ], 'mask' : [ self_cmd.mask , 0 , 0 , '' , parsing.STRICT ], 'map_set' : [ self_cmd.map_set , 0 , 0 , '' , parsing.STRICT ], 'map_set_border': [ self_cmd.map_set_border , 0 , 0 , '' , parsing.STRICT ], 'map_double' : [ self_cmd.map_double , 0 , 0 , '' , parsing.STRICT ], 'map_halve' : [ self_cmd.map_halve , 0 , 0 , '' , parsing.STRICT ], 'map_new' : [ self_cmd.map_new , 0 , 0 , '' , parsing.STRICT ], 'map_trim' : [ self_cmd.map_trim , 0 , 0 , '' , parsing.STRICT ], 'mappend' : [ self_cmd.mappend , 2 , 2 , ':' , parsing.MOVIE ], 'matrix_reset' : [ self_cmd.matrix_reset , 0 , 0 , '' , parsing.STRICT ], 'matrix_copy' : [ self_cmd.matrix_copy , 0 , 0 , '' , parsing.STRICT ], 'mcopy' : [ self_cmd.mcopy , 0 , 0 , '' , parsing.STRICT ], 'mdelete' : [ self_cmd.mdelete , 0 , 0 , '' , parsing.STRICT ], 'mem' : [ self_cmd.mem , 0 , 0 , '' , parsing.STRICT ], 'meter_reset' : [ self_cmd.meter_reset , 0 , 0 , '' , parsing.STRICT ], 'minsert' : [ self_cmd.minsert , 0 , 0 , '' , parsing.STRICT ], 'mmove' : [ self_cmd.mmove , 0 , 0 , '' , parsing.STRICT ], 'move' : [ self_cmd.move , 0 , 0 , '' , parsing.STRICT ], 'mse2met' : [ self_cmd.mse2met , 0 , 0 , '' , parsing.STRICT ], 'mset' : [ self_cmd.mset , 0 , 0 , '' , parsing.STRICT ], 'mdo' : [ self_cmd.mdo , 2 , 2 , ':' , parsing.MOVIE ], 'mdump' : [ self_cmd.mdump , 0 , 0 , '' , parsing.STRICT ], 'mpng' : [ self_cmd.mpng , 0 , 0 , '' , parsing.SECURE ], 'mplay' : [ self_cmd.mplay , 0 , 0 , '' , parsing.STRICT ], 'mtoggle' : [ self_cmd.mtoggle , 0 , 0 , '' , parsing.STRICT ], 'mstop' : [ self_cmd.mstop , 0 , 0 , '' , parsing.STRICT ], 'mclear' : [ self_cmd.mclear , 0 , 0 , '' , parsing.STRICT ], 'middle' : [ self_cmd.middle , 0 , 0 , '' , parsing.STRICT ], 'mmatrix' : [ self_cmd.mmatrix , 0 , 0 , '' , parsing.STRICT ], 'mouse' : [ self_cmd.mouse , 0 , 0 , '' , parsing.STRICT ], 'morph' : [ self_cmd.morph , 0 , 0 , '' , parsing.STRICT ], 'multisave' : [ self_cmd.multisave , 0 , 0 , '' , parsing.STRICT ], 'multifilesave' : [ self_cmd.multifilesave , 0 , 0 , '' , parsing.STRICT ], 'mview' : [ self_cmd.mview , 0 , 0 , '' , parsing.STRICT ], 'order' : [ self_cmd.order , 0 , 0 , '' , parsing.STRICT ], 'origin' : [ self_cmd.origin , 0 , 0 , '' , parsing.STRICT ], 'orient' : [ self_cmd.orient , 0 , 0 , '' , parsing.STRICT ], 'overlap' : [ self_cmd.overlap , 0 , 0 , '' , parsing.STRICT ], 'pair_fit' : [ self_cmd.pair_fit , 0 , 0 , '' , parsing.STRICT ], 'pass' : [ self_cmd.python_help , 0 , 0 , '' , parsing.PYTHON ], 'phi_psi' : [ self_cmd.phi_psi , 0 , 0 , '' , parsing.STRICT ], 'pop' : [ self_cmd.pop , 0 , 0 , '' , parsing.STRICT ], 'protect' : [ self_cmd.protect , 0 , 0 , '' , parsing.STRICT ], 'pseudoatom' : [ self_cmd.pseudoatom , 0 , 0 , '' , parsing.STRICT ], 'pwd' : [ self_cmd.pwd , 0 , 0 , '' , parsing.STRICT ], 'python' : [ self_cmd.helping.python , 0 , 2 , ',' , parsing.PYTHON_BLOCK ], 'skip' : [ self_cmd.helping.skip , 0 , 1 , ',' , parsing.SKIP ], 'raise' : [ self_cmd.python_help , 0 , 0 , '' , parsing.PYTHON ], 'ramp_new' : [ self_cmd.ramp_new , 0 , 0 , '' , parsing.STRICT ], 'ramp_update' : [ self_cmd.ramp_update , 0 , 0 , '' , parsing.STRICT ], 'ray' : [ self_cmd.ray , 0 , 0 , '' , parsing.STRICT ], 'rebuild' : [ self_cmd.rebuild , 0 , 0 , '' , parsing.STRICT ], 'recolor' : [ self_cmd.recolor , 0 , 0 , '' , parsing.STRICT ], 'redo' : [ self_cmd.redo , 0 , 0 , '' , parsing.STRICT ], 'reference' : [ self_cmd.reference , 0 , 0 , '' , parsing.STRICT ], 'volume_ramp_new': [ self_cmd.volume_ramp_new, 0 , 0 , '' , parsing.STRICT ], 'reinitialize' : [ self_cmd.reinitialize , 0 , 0 , '' , parsing.STRICT ], 'refresh' : [ self_cmd.refresh , 0 , 0 , '' , parsing.STRICT ], 'refresh_wizard': [ self_cmd.refresh_wizard , 0 , 0 , '' , parsing.STRICT ], 'remove' : [ self_cmd.remove , 0 , 0 , '' , parsing.STRICT ], 'remove_picked' : [ self_cmd.remove_picked , 0 , 0 , '' , parsing.STRICT ], 'rename' : [ self_cmd.rename , 0 , 0 , '' , parsing.STRICT ], 'replace' : [ self_cmd.replace , 0 , 0 , '' , parsing.STRICT ], 'replace_wizard': [ self_cmd.replace_wizard , 0 , 0 , '' , parsing.STRICT ], 'reset' : [ self_cmd.reset , 0 , 0 , '' , parsing.STRICT ], 'resume' : [ self_cmd.resume , 0 , 0 , '' , parsing.STRICT ], 'rewind' : [ self_cmd.rewind , 0 , 0 , '' , parsing.STRICT ], # 'rgbfunction' : [ self_cmd.rgbfunction , 0 , 0 , '' , parsing.LEGACY ], 'rock' : [ self_cmd.rock , 0 , 0 , '' , parsing.STRICT ], 'rotate' : [ self_cmd.rotate , 0 , 0 , '' , parsing.STRICT ], 'run' : [ self_cmd.run , 0 , 0 , ',' , parsing.SECURE ], # insecure 'rms' : [ self_cmd.rms , 0 , 0 , '' , parsing.STRICT ], 'rms_cur' : [ self_cmd.rms_cur , 0 , 0 , '' , parsing.STRICT ], 'save' : [ self_cmd.save , 0 , 0 , '' , parsing.SECURE ], 'scene' : [ self_cmd.scene , 0 , 0 , '' , parsing.STRICT ], 'scene_order' : [ self_cmd.scene_order , 0 , 0 , '' , parsing.STRICT ], 'sculpt_purge' : [ self_cmd.sculpt_purge , 0 , 0 , '' , parsing.STRICT ], 'sculpt_deactivate': [ self_cmd.sculpt_deactivate,0, 0 , '' , parsing.STRICT ], 'sculpt_activate': [ self_cmd.sculpt_activate , 0 , 0 , '' , parsing.STRICT ], 'sculpt_iterate': [ self_cmd.sculpt_iterate , 0 , 0 , '' , parsing.STRICT ], 'spectrum' : [ self_cmd.spectrum , 0 , 0 , '' , parsing.STRICT ], 'select' : [ self_cmd.select , 0 , 0 , '' , parsing.LEGACY ], 'set' : [ self_cmd.set , 0 , 0 , '' , parsing.LEGACY ], 'set_bond' : [ self_cmd.set_bond , 0 , 0 , '' , parsing.STRICT ], 'set_color' : [ self_cmd.set_color , 0 , 0 , '' , parsing.LEGACY ], 'set_dihedral' : [ self_cmd.set_dihedral , 0 , 0 , '' , parsing.STRICT ], 'set_name' : [ self_cmd.set_name , 0 , 0 , '' , parsing.STRICT ], 'set_geometry' : [ self_cmd.set_geometry , 0 , 0 , '' , parsing.STRICT ], 'set_symmetry' : [ self_cmd.set_symmetry , 0 , 0 , '' , parsing.STRICT ], 'set_title' : [ self_cmd.set_title , 0 , 0 , '' , parsing.STRICT ], 'set_key' : [ self_cmd.set_key , 0 , 0 , '' , parsing.LITERAL1 ], # insecure 'set_view' : [ self_cmd.set_view , 0 , 0 , '' , parsing.STRICT ], 'show' : [ self_cmd.show , 0 , 0 , '' , parsing.STRICT ], 'slice_new' : [ self_cmd.slice_new , 0 , 0 , '' , parsing.STRICT ], # 'slice_lock' : [ self_cmd.slice_lock , 0 , 0 , '' , parsing.LEGACY ], # 'slice_unlock' : [ self_cmd.slice_unlock , 0 , 0 , '' , parsing.LEGACY ], 'smooth' : [ self_cmd.smooth , 0 , 0 , '' , parsing.STRICT ], 'sort' : [ self_cmd.sort , 0 , 0 , '' , parsing.STRICT ], 'spawn' : [ self_cmd.spawn , 0 , 0 , ',' , parsing.SECURE ], # insecure 'spheroid' : [ self_cmd.spheroid , 0 , 0 , '' , parsing.STRICT ], 'splash' : [ self_cmd.splash , 0 , 0 , '' , parsing.STRICT ], 'split_chains' : [ self_cmd.split_chains , 0 , 0 , '' , parsing.STRICT ], 'split_states' : [ self_cmd.split_states , 0 , 0 , '' , parsing.STRICT ], '_special' : [ self_cmd._special , 0 , 0 , '' , parsing.STRICT ], 'stereo' : [ self_cmd.stereo , 0 , 0 , '' , parsing.STRICT ], 'super' : [ self_cmd.super , 0 , 0 , '' , parsing.STRICT ], 'symexp' : [ self_cmd.symexp , 0 , 0 , '' , parsing.LEGACY ], 'symmetry_copy' : [ self_cmd.symmetry_copy , 0 , 0 , '' , parsing.STRICT ], 'system' : [ self_cmd.system , 0 , 0 , '' , parsing.LITERAL ], 'toggle' : [ self_cmd.toggle , 0 , 0 , '' , parsing.STRICT ], 'torsion' : [ self_cmd.torsion , 0 , 0 , '' , parsing.STRICT ], # vs toggle_object 'translate' : [ self_cmd.translate , 0 , 0 , '' , parsing.STRICT ], 'try' : [ self_cmd.python_help , 0 , 0 , '' , parsing.PYTHON ], 'turn' : [ self_cmd.turn , 0 , 0 , '' , parsing.STRICT ], 'quit' : [ self_cmd.quit , 0 , 0 , '' , parsing.STRICT ], '_quit' : [ self_cmd._quit , 0 , 0 , '' , parsing.STRICT ], 'png' : [ self_cmd.png , 0 , 0 , '' , parsing.SECURE ], 'unbond' : [ self_cmd.unbond , 0 , 0 , '' , parsing.STRICT ], 'unpick' : [ self_cmd.unpick , 0 , 0 , '' , parsing.STRICT ], 'undo' : [ self_cmd.undo , 0 , 0 , '' , parsing.STRICT ], 'ungroup' : [ self_cmd.ungroup , 0 , 0 , '' , parsing.STRICT ], 'uniquify' : [ self_cmd.uniquify , 0 , 0 , '' , parsing.STRICT ], 'unmask' : [ self_cmd.unmask , 0 , 0 , '' , parsing.STRICT ], 'unset' : [ self_cmd.unset , 0 , 0 , '' , parsing.STRICT ], 'unset_bond' : [ self_cmd.unset_bond , 0 , 0 , '' , parsing.STRICT ], 'unset_deep' : [ self_cmd.unset_deep , 0 , 0 , '' , parsing.STRICT ], 'update' : [ self_cmd.update , 0 , 0 , '' , parsing.STRICT ], 'valence' : [ self_cmd.valence , 0 , 0 , '' , parsing.STRICT ], 'vdw_fit' : [ self_cmd.vdw_fit , 0 , 0 , '' , parsing.STRICT ], 'view' : [ self_cmd.view , 0 , 0 , '' , parsing.STRICT ], 'viewport' : [ self_cmd.viewport , 0 , 0 , '' , parsing.STRICT ], 'volume' : [ self_cmd.volume , 0 , 0 , '' , parsing.STRICT ], 'volume_color' : [ self_cmd.volume_color , 0 , 0 , '' , parsing.STRICT ], 'volume_panel' : [ self_cmd.volume_panel , 0 , 0 , '' , parsing.STRICT ], 'window' : [ self_cmd.window , 0 , 0 , '' , parsing.STRICT ], 'while' : [ self_cmd.python_help , 0 , 0 , '' , parsing.PYTHON ], 'wizard' : [ self_cmd.wizard , 0 , 0 , '' , parsing.STRICT ], 'zoom' : [ self_cmd.zoom , 0 , 0 , '' , parsing.STRICT ], # utility programs 'util.cbag' : [ self_cmd.util.cbag , 0 , 0 , '' , parsing.STRICT ], 'util.cbac' : [ self_cmd.util.cbac , 0 , 0 , '' , parsing.STRICT ], 'util.cbay' : [ self_cmd.util.cbay , 0 , 0 , '' , parsing.STRICT ], 'util.cbas' : [ self_cmd.util.cbas , 0 , 0 , '' , parsing.STRICT ], 'util.cbap' : [ self_cmd.util.cbap , 0 , 0 , '' , parsing.STRICT ], 'util.cbak' : [ self_cmd.util.cbak , 0 , 0 , '' , parsing.STRICT ], 'util.cbaw' : [ self_cmd.util.cbaw , 0 , 0 , '' , parsing.STRICT ], 'util.cbab' : [ self_cmd.util.cbab , 0 , 0 , '' , parsing.STRICT ], 'util.cbao' : [ self_cmd.util.cbao , 0 , 0 , '' , parsing.STRICT ], 'util.cbam' : [ self_cmd.util.cbam , 0 , 0 , '' , parsing.STRICT ], 'util.cbc' : [ self_cmd.util.cbc , 0 , 0 , '' , parsing.STRICT ], 'util.chainbow' : [ self_cmd.util.chainbow , 0 , 0 , '' , parsing.STRICT ], 'util.cnc' : [ self_cmd.util.cnc , 0 , 0 , '' , parsing.STRICT ], 'util.ss' : [ self_cmd.util.ss , 0 , 0 , '' , parsing.STRICT ],# secondary structure 'util.rainbow' : [ self_cmd.util.rainbow , 0 , 0 , '' , parsing.STRICT ], # movie programs 'movie.load' : [ self_cmd.movie.load , 0 , 0 , '' , parsing.STRICT ], 'movie.nutate' : [ self_cmd.movie.nutate , 0 , 0 , '' , parsing.STRICT ], 'movie.pause' : [ self_cmd.movie.pause , 0 , 0 , '' , parsing.STRICT ], 'movie.produce' : [ self_cmd.movie.produce , 0 , 0 , '' , parsing.STRICT ], 'movie.rock' : [ self_cmd.movie.rock , 0 , 0 , '' , parsing.STRICT ], 'movie.roll' : [ self_cmd.movie.roll , 0 , 0 , '' , parsing.STRICT ], 'movie.screw' : [ self_cmd.movie.screw , 0 , 0 , '' , parsing.STRICT ], 'movie.sweep' : [ self_cmd.movie.sweep , 0 , 0 , '' , parsing.STRICT ], 'movie.tdroll' : [ self_cmd.movie.tdroll , 0 , 0 , '' , parsing.STRICT ], 'movie.zoom' : [ self_cmd.movie.zoom , 0 , 0 , '' , parsing.STRICT ], # activate metaphorics extensions # 'metaphorics' : [ self_cmd.metaphorics , 0 , 0 , '' , parsing.STRICT ], } def fix_list(kw_list): # remove legacy commands from the shortcut list pass def fix_dict(keyword): # Prepare for Python 2.6 (not hashed) keyword['show_as'] = keyword['as'] # Aliases for Mother England (not hashed) keyword['colour'] = keyword['color'] keyword['set_colour'] = keyword['set_color'] keyword['recolour'] = keyword['recolor'] keyword['bg_colour'] = keyword['bg_color'] # legacy keyword['matrix_transfer'] = keyword['matrix_copy'] keyword['util.mrock'] = [ cmd.util.mrock, 0, 0, '', parsing.STRICT ] keyword['util.mroll'] = [ cmd.util.mroll, 0, 0, '', parsing.STRICT ] def get_help_only_keywords(self_cmd=cmd): return { 'commands' : [ self_cmd.helping.commands ], 'editing' : [ self_cmd.helping.editing ], 'edit_keys' : [ self_cmd.helping.edit_keys ], 'examples' : [ self_cmd.helping.examples ], 'extend' : [ self_cmd.extend ], 'faster' : [ self_cmd.helping.faster ], 'find_pairs' : [ self_cmd.find_pairs ], 'get_movie_playing' : [ self_cmd.get_movie_playing ], 'get_model' : [ self_cmd.get_model ], 'get_mtl_obj' : [ self_cmd.get_mtl_obj ], 'get_names' : [ self_cmd.get_names ], 'get_object_list' : [ self_cmd.get_object_list ], 'get_object_matrix' : [ self_cmd.get_object_matrix ], 'get_povray' : [ self_cmd.get_povray ], 'get_pdbstr' : [ self_cmd.get_pdbstr ], 'keyboard' : [ self_cmd.helping.keyboard ], 'launching' : [ self_cmd.helping.launching ], 'load_model' : [ self_cmd.load_model ], 'movies' : [ self_cmd.helping.movies ], 'python_help' : [ self_cmd.python_help ], 'povray' : [ self_cmd.helping.povray ], 'read_molstr' : [ self_cmd.read_molstr ], 'read_pdbstr' : [ self_cmd.read_pdbstr ], 'read_sdfstr' : [ self_cmd.read_sdfstr ], 'release' : [ self_cmd.helping.release ], 'selections' : [ self_cmd.helping.selections ], 'sync' : [ self_cmd.sync ], 'stereochemistry' : [ self_cmd.helping.stereochemistry ], 'text_type' : [ self_cmd.helping.text_type ], 'transparency' : [ self_cmd.helping.transparency ], '@' : [ self_cmd.helping.at_sign ], }